Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_070189
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 181688
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:598 original size:21 final size:22
Alignment explanation
Indices: 567--614 Score: 89
Period size: 21 Copynumber: 2.2 Consensus size: 22
557 GGATGAAGCC
567 ACCAAGACAACTATGATTGTAG
1 ACCAAGACAACTATGATTGTAG
589 ACCAA-ACAACTATGATTGTAG
1 ACCAAGACAACTATGATTGTAG
610 ACCAA
1 ACCAA
615 CCTTATCTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (22 bp):
ACCAAGACAACTATGATTGTAG
Left flanking sequence: Indices 67 -- 566
TGGCGCCGGTGCCCCGAACCCGCCGAGTGACGAGGACCGGAGGGAGGTTTTTTAAGTTATAAAGA
ACCTAATCTTGGAGGGGATTCAGGACTACCTTAACAAATTCCCCCAAAAGATACGCGAGGAGTTT
CCCTCGGCCGATCACCTGATCGACACAAACATCTCCCCGAATCCATTTTTGACGGAGGTATTAGG
GGAAAGATAGATATAGTTAGATATAAAGGCTTAAATCGATAGTTGTTAGAGTCTCCATGTGGTAC
CGGGCTACTTTCAAGGCACCTTCGGCTTAAGTAAAGTAGGTCATAGAATAGAATTAGTTTACCTC
ATATAGATCAATATAGCTAATAAGAAAGGAGCATGGTAATAGCAGATGCGGCTGTCTGGATCCGA
CATGTTCTTTCTCACACTTCTTTCAGAAAAGGGTGTCCGGTAGAGTGGTCCAAGGCAAGCATCGA
GCTCTTTCCTTCTTTTGATCAATCTTTCTCTGCCAGGATGAAGCC
Right flanking sequence: Indices 615 -- 1114
CCTTATCTGATCGCGCGTTAGCCCTGACCATTTGAGAACCACGAAAAAGGACAAAGGAAAGGAGA
AAGCAGTAGAGAAAGAGCCCGAGCATTCGAAAATTCCGTCCGCCAGACTGTTAGAGTAATTGAAC
TTGACGTTGTGATCGGGCCGTACCAGTTCAAGATCGGTTTGAATGTGGTAGATATTGAGGCATCG
TTCGCTTTCCTATTGGTTTGGCTCCATTCAGCAGGTTTGGAACCCATAAGGCCCATCTACGCTGC
ACCAAAGAGTAAAGTTCATTATCGACGACCAGCTAGTCACTATCTTGGCTGATGACGAAGAAGTG
GGCTCAAGAAAGGTAGAAGTTGTGCAGCATGTAGAGTTGGGACTTCAATTCCTATCGTATCAGTT
CGAGACAGTCAATTGTATCCCCCTCGACGCGCCGCAGCCACTACTTTGACTCCTTTTATGCAATT
ATGAACTCCACGGAACTTTCTCGATTCCAACGCAACTTATCCTTT
Found at i:10564 original size:21 final size:21
Alignment explanation
Indices: 10521--10565 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
10511 TTACATCGAT
*
10521 CCACAGAACGTAGATTGTAGA
1 CCACAGAACGTAGATTCTAGA
10542 CCACAGAACGTAGA-TCTACGA
1 CCACAGAACGTAGATTCTA-GA
10563 CCA
1 CCA
10566 ACCTCGGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.16
Consensus pattern (21 bp):
CCACAGAACGTAGATTCTAGA
Left flanking sequence: Indices 10021 -- 10520
AAGGAAGCATCTCGATAGGTCCGCAACCTGTGCTGTGGTTGATGCCCCACCCGAGCTCTAATTCC
ATACTAGATTTGCCGGTTCTTCGTCTGAGCGGCCCCCTGAGGATGCGGGAAGCCAATGATAGGAG
TGGTTAACTGGACTCTCTTCGAAGGATTTCAACCTTGTCCGTGGCGACGCCTAAGCCGCTTTAGT
AGGGACGGACTGAAATACCCCATCATAATAGCACTCCAAGGTTCCAGCAGGGAACTATTGAAGCT
TCCAGCTTTCCGAGCGTAAATAAACACGATCTTCGTTCGGCACGCGTCCAGTCCAAACACAGTCT
TGCTCCTGCGCATTAAGGACTATACCACTATATACGCCCAGAAAAAGCTTATTTACCCCTATGGT
ATATCCCCCTTCCTATAGGACGAGCCACAGGATCTGAAAGAGATTGAACAAGACAACGTAGATTG
TAGACCAAGAACAACTGATCTACGTTCCTTCTCAATTACATCGAT
Right flanking sequence: Indices 10566 -- 11065
ACCTCGGCTAACTATTCGCCTTTGGTTAACCGGGTTGGGGTGCATCCAACATTCTGAAGTTTTAG
ACTTTGCAAACCTCGATAACCACCCCCACAACGTAGATCGTAGACCAACCTTCTTTGAATGAGGA
GCTTAACTCTTTAGAAAAGACTCCCACTCCTAAAGTCCCGCGGAATAATAAGACGAGTTAAATTC
CACGCTGGAAGCCCCAGTTACTGATCCCAACTTGGCGGTTGACCTGCTCCCTGCTCTACTTCTGC
AAAAGATCCTGCGGAAAACCACTCAGCTTTCTCTTCTCCAAGTTGCTCCTATATATGGCGGAGTC
TGCAGCTTCAAGCTCGGATATTTATAAGTCCGTTAGGGGACCTGGATTTGCCGGTTCGAGATGAG
AAACTTAACCTTGTGGTCCAGTTAGTCCTGAAAAAACGGATGCAAATGCTTTTGGATGGTCGCGT
CTCCGAAAGTAGCTGCGGGATCAAGGCCCGGGAGAGCTTTTGGAA
Found at i:20803 original size:23 final size:23
Alignment explanation
Indices: 20743--20791 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
20733 TGTGCTGAGG
20743 ATGCTCGTAGATCAGTGAGTTGT
1 ATGCTCGTAGATCAGTGAGTTGT
20766 ATGCTCGTAGATCAGTGAGTTGT
1 ATGCTCGTAGATCAGTGAGTTGT
20789 ATG
1 ATG
20792 GTCTACGATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.22, C:0.12, G:0.31, T:0.35
Consensus pattern (23 bp):
ATGCTCGTAGATCAGTGAGTTGT
Left flanking sequence: Indices 20243 -- 20742
CCCTTCTTAGAAAGCACTCACTGAGTTACTTACGGAATCTCAAATCTCTCTCGACGCCGAGAATT
TTTTATGTGTCCAGGTCGATCAGAGGTTCGCGCTAAACGCTCTCACCTTTTAGCGTTCTGGGCCC
CTGGAAAAATAAAGAAACCCGAAATCAAAAAGAAAGAAGAGAAATTGGGCCGTGTTTCCCGAGAG
AGGCCGCCTTCTCTCAGGCCAGCAGTCTTCTACTTCTAGTCGACTGCTCTATGAGGGGCTTCCCT
GTTTCCTGGGCTCTGCTCGCTCGTTTTACGCTCCGACCCAAAAAACGATGTTTCCTTGCGTTGTC
GTCAAAAAAAGGGCAATCAATCAGAATTAAAATGGGAATAGTGAATCAAGATCTAGACTATCCTC
TATCCGGATAGATATGCCCCTATGCGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTT
TCCGCTCCGAAGAGGAATGATTCTCGCTTAGCGCTTGTGCTGAGG
Right flanking sequence: Indices 20792 -- 21291
GTCTACGATCAGAAGTAAAGGTTTGGATCTTTCAATCTTATGTCGTGCGGGATGTGACCTATGTT
AGGTCCATAAGATACCACAGCTTTTGGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGGA
AAAGCCTTTTGATTCTTCTCTTCATAGTAAACTGATGGGGGGACGCGGAGCAATAGGTCGAATTA
CTATATAAAGAAGAGTTGTAAACCATAGGACTTCTTGTTCGAGTAGGAGGATTTCGGCTTTTCTC
GTTCCTTCTCTTTGATAAGAATAGGGATTTTAAATGATACAAATTCCTCTTTATTCTGTTGTGCT
CAGCGAAGGAACTGCCTAAGCATACTTTTTCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCT
TCTTGCATAGAAGAACGCAACTGTCGCAAAAACCGGGATTTTAGTAGTAGGCGGCACCCCCTCTT
AGTTTTAAGTAGGCGGAACCATTCTGTTTTGGTTCTTCTCCACAT
Found at i:23969 original size:23 final size:23
Alignment explanation
Indices: 23943--24026 Score: 159
Period size: 23 Copynumber: 3.7 Consensus size: 23
23933 AAATGCTCTT
*
23943 CTGATCTACGACCATACAACTCA
1 CTGATCTACGAGCATACAACTCA
23966 CTGATCTACGAGCATACAACTCA
1 CTGATCTACGAGCATACAACTCA
23989 CTGATCTACGAGCATACAACTCA
1 CTGATCTACGAGCATACAACTCA
24012 CTGATCTACGAGCAT
1 CTGATCTACGAGCAT
24027 CCTCAGCACA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.23
Consensus pattern (23 bp):
CTGATCTACGAGCATACAACTCA
Left flanking sequence: Indices 23443 -- 23942
CTTACCATTTCTTCGGAATTGTCCGATTGTAGCCCGACGCGCTGCTTCAATGGCTCGATATGAAA
GACGACCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTCG
CGACCCCTACTACATCTGCCTTTACGATATTTACTATATTTCGTACGTTTCGGATATAGCACGTT
CCTTTTTTTTACTATATGAAATCCGCACTTTGACACCTGAGATTCCGTAACGAGTAGATACTTCC
GCAGGAGCATAATAGATTTTCTGGTTAAATACATTACGAGATGTTTTTCTATACTTTCCGCATTC
AGTTCTAGCAATTTCTGCACCTTCTGATCGACCTGAACAACACAACTATGATCGTAGACCAAGAA
CAACTGATCGTAGACCACAGAACGTAGATCTACGACCAACCTCCACCCCTTTTTTCATTACTAAT
GGAATATCCTTCACTATTTTACTAAAAATGGAACGAAATGCTCTT
Right flanking sequence: Indices 24027 -- 24526
CCTCAGCACAAGCGCTAAGCGAGAATCATTCCTCCTTAGAATGGGAATTTGACACATCTATGATA
CCTAAAAGTCTTAAAATTTGTTTATATAGGCAGACATTAGCCTCTGAGCGAATCTACCCCCTCTT
AGGTGTTTTAGCACTCCGATCGTCTAACAAACAGGGGGATTGAAGCCTAAACAACAAGATCCGAG
CCAGGAGCTTTGGGTTGCCCATCAGTTCATTCAGTTTGGATTTCCTCAAACATAGGCACTTTAGG
CAGCTACCCGAGAGATCAATCTTCTTGCAAGGAATGTGGGAAATAGCCTGGCAAAGGCATCTTCT
ATAGATGGACCGAAACCGGACCTAAAGGATTTGCCTGGGGCAGAAAGTGAAAGTGGTTAAAAGAC
TTCACCCGCACCAATTGCTGCTAACGCTGCTTCTTGTTTTGTGTTTACTGACACAACGAGCCCAA
CAGGAACCTCTGAAAAAGAGGCATTTTTACAGTAAGTAGGGCAGT
Found at i:28475 original size:16 final size:17
Alignment explanation
Indices: 28448--28481 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
28438 AAGCTTGTTT
28448 TTTGTCCTGTTAGCGCC
1 TTTGTCCTGTTAGCGCC
28465 TTTGT-CTGTTAGCGCC
1 TTTGTCCTGTTAGCGCC
28481 T
1 T
28482 AGTGCTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.06, C:0.26, G:0.24, T:0.44
Consensus pattern (17 bp):
TTTGTCCTGTTAGCGCC
Left flanking sequence: Indices 27948 -- 28447
TATATACGCAATTAAGGCATCAGGAAGAAAGTAGTAGGTTGCCTTTCATTGAGCTAGCGATGCGC
GCTGGCGTGGTGGATCTCCTTCCCTTCTGTGTAGGTAGGGGGCTGGCTGGCCATTCCTCCTCGCG
CCATCAACGAGCGCCTTCTTGTATCACAGGCAGTGTCGTCTTTCAAGCCAGAGACCCCTGTCGCT
GGTTATGTAAGATAATAGGATCTCGTTATATAAGAGAATTCGTGTTGCTTTCTTTTAGCACCCGA
TGTTAACAACCGATATATCCGCTGCGTGATATCCGCTCTGTTGTTAGCTGTTGTAGCTGTGACTG
TAGCGAGGCTTCGCCGATTGAGAATACCCCACCGAGTTGACTACACGTAACTCTCTCTCTGTAGG
CCCAGCAAACGGGGCGCTTAGTCAATTCAACTCTCTATTCAGTAGGCCAAGACAACTCAACAACC
ACTGAACGTACTCTCGATCTTTTCATTCTCGTTCGAAGCTTGTTT
Right flanking sequence: Indices 28482 -- 28981
AGTGCTTGGTATATGTCGATTTACTATCTCTGGAGATGGGGCTGATGCCATTTCGTTTCTTTTCT
TAAGGATCAGCTGGCCTTTAAGATATGAAGGATCTTGGACCTCTTAAGTCTTTTCTTGGAATAGA
GGTTGCACCTCGCGGTTATGTTCTATAACTGTGCTAGTATGCTCTCGATCTCATATCTCGCACTG
GTCTTATCTCTGCTCGACATGCATAGACTCCTCTTTAGCTTAATGTTCAGTACTCCTCTCCTTAT
CAGTCAAGGTTATGTAATACTCGCTCCACTAGCTAGTAGGAAGTTAGAATAGATAGGCACTCGCA
AGCCCGAAACCCACCGCTTTCTTGTTCTAGTTCTGTTTCTTTTCCAATTACTGAGCTTTCTAGGT
AGTACGCTTATTAGGAGACCATAGACCATAGCGGATTTGCTAGCTAACGAGCAGCTAACAAGAGT
GATAAAACACGGAAAGAATAGTTACAAGCGTACTGCTCTGCTACG
Found at i:36126 original size:21 final size:21
Alignment explanation
Indices: 36109--36177 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
36099 ACTGATCGTA
36109 GACCACAGAACGTAGATCGTA-
1 GACCACAGAACGTAGATC-TAC
* *
36130 GACCAATAATAAC-T-GATCTAC
1 GACC-A-CAGAACGTAGATCTAC
36151 GACCACAGAACGTAGATCTAC
1 GACCACAGAACGTAGATCTAC
36172 GACCAC
1 GACCAC
36178 CCTTAGTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 4 0.10
20 4 0.10
21 25 0.64
22 2 0.05
23 4 0.10
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.16
Consensus pattern (21 bp):
GACCACAGAACGTAGATCTAC
Left flanking sequence: Indices 35609 -- 36108
AAAGGGTGACATTGTAGGTTAGATTCCTACTTGTTGAAGGTCTATAGTGTGTTATAATGACAATT
AGGTAGTTACTGATCTACGATCATAGTTGTGAAGTCTGGTTTGCGAGCTGTATTTGCCTCTCTGC
GCTGCTGCTTTGCTTTGTAGGCTTTAGAGAAAAAGTCCCTCTTGCGCCGGTAGATTGAATACCAG
GCTGTCTTGATGGCAGCGAATACCGGCGACTTATTAGCATTAAAAGGATTTCCCTAAAATCATGC
TTTACCTAAGGATTTCCACAGTTCGATACCTTTTCTTGAGGCCAGTTATTTGGTTCCCATAGGTA
GATTGGTCCCTGCTCTGTTATCTGCCTACTTGGCTCAGGCTCTAACCGCTTCCCCTTCTATTGGC
TCCGTAGGATGGAGTACTTATTTCGCTGAATAGGAAGCTAACCAAGGTACAGAAAAGACGGTTTC
TTTGGGAAAAACTTCAATTACAGTGACCAAGAACAACTGATCGTA
Right flanking sequence: Indices 36178 -- 36677
CCTTAGTTTAAGGCAAATAGTCCCTAGTGATTCTTGGGTTGACCCGTCATAACCCTTGACGGTTG
TGATACAAGGGGTAAAGTCTTCTTCGCTTATCCCTAGGGCTTCTGCGATTTCTAGGGTGCAGACG
TTGATTCCTTCCCCATTGTAAACCATTGTTCGTCTAATCCTGCTGTCTCCTACGTAGGCGGTAAT
GTAGACAGCATCTAGGTGTGGGTGTCTACTAGCATCTATATCCTCATCCGATAATGTTATTGGTT
GGGGTGCAATGATCTGGGAAAAGATAGACTGAAGTTCTCTGTCCCTAGGGATTCGTGCTTATCTA
AGAAGGGTATAGAAGAGTTCGGCTGGGGGGTCTTGCTTGACTAATAGGGGCCTAGTGCTATTGGC
TTATTTTATTCCTGCACCTGTTCGATTGTTTTTATAGTTGTCGGAAGTAAGAATGGTGCTTTTTT
AATGATTTGTCACGTAAGGGAGAATCAAAGAAATGGACCTAGCCA
Found at i:36147 original size:42 final size:42
Alignment explanation
Indices: 36088--36176 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 42
36078 CAATTACAGT
36088 GACCAAGAACAACTGATCGTA-GACCACAGAACGTAGATCGTA-
1 GACCAAGAACAACTGATC-TACGACCACAGAACGTAGATC-TAC
* *
36130 GACCAATAATAACTGATCTACGACCACAGAACGTAGATCTAC
1 GACCAAGAACAACTGATCTACGACCACAGAACGTAGATCTAC
36172 GACCA
1 GACCA
36177 CCCTTAGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 4 0.09
42 39 0.91
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.16
Consensus pattern (42 bp):
GACCAAGAACAACTGATCTACGACCACAGAACGTAGATCTAC
Left flanking sequence: Indices 35588 -- 36087
ACGGTGATTTCGGCTTTTCAAAAAGGGTGACATTGTAGGTTAGATTCCTACTTGTTGAAGGTCTA
TAGTGTGTTATAATGACAATTAGGTAGTTACTGATCTACGATCATAGTTGTGAAGTCTGGTTTGC
GAGCTGTATTTGCCTCTCTGCGCTGCTGCTTTGCTTTGTAGGCTTTAGAGAAAAAGTCCCTCTTG
CGCCGGTAGATTGAATACCAGGCTGTCTTGATGGCAGCGAATACCGGCGACTTATTAGCATTAAA
AGGATTTCCCTAAAATCATGCTTTACCTAAGGATTTCCACAGTTCGATACCTTTTCTTGAGGCCA
GTTATTTGGTTCCCATAGGTAGATTGGTCCCTGCTCTGTTATCTGCCTACTTGGCTCAGGCTCTA
ACCGCTTCCCCTTCTATTGGCTCCGTAGGATGGAGTACTTATTTCGCTGAATAGGAAGCTAACCA
AGGTACAGAAAAGACGGTTTCTTTGGGAAAAACTTCAATTACAGT
Right flanking sequence: Indices 36177 -- 36676
CCCTTAGTTTAAGGCAAATAGTCCCTAGTGATTCTTGGGTTGACCCGTCATAACCCTTGACGGTT
GTGATACAAGGGGTAAAGTCTTCTTCGCTTATCCCTAGGGCTTCTGCGATTTCTAGGGTGCAGAC
GTTGATTCCTTCCCCATTGTAAACCATTGTTCGTCTAATCCTGCTGTCTCCTACGTAGGCGGTAA
TGTAGACAGCATCTAGGTGTGGGTGTCTACTAGCATCTATATCCTCATCCGATAATGTTATTGGT
TGGGGTGCAATGATCTGGGAAAAGATAGACTGAAGTTCTCTGTCCCTAGGGATTCGTGCTTATCT
AAGAAGGGTATAGAAGAGTTCGGCTGGGGGGTCTTGCTTGACTAATAGGGGCCTAGTGCTATTGG
CTTATTTTATTCCTGCACCTGTTCGATTGTTTTTATAGTTGTCGGAAGTAAGAATGGTGCTTTTT
TAATGATTTGTCACGTAAGGGAGAATCAAAGAAATGGACCTAGCC
Found at i:47028 original size:21 final size:21
Alignment explanation
Indices: 47003--47077 Score: 75
Period size: 21 Copynumber: 3.6 Consensus size: 21
46993 CTACAACGTA
47003 GATCGTAGACCAAGAACAACT
1 GATCGTAGACCAAGAACAACT
*
47024 GATCGTAGACCACAGAAC--GT
1 GATCGTAGACCA-AGAACAACT
* *
47044 AGATCGTAGACCAATAATAACT
1 -GATCGTAGACCAAGAACAACT
47066 GATC-TACGACCA
1 GATCGTA-GACCA
47078 CCCTAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
20 6 0.13
21 33 0.73
22 6 0.13
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (21 bp):
GATCGTAGACCAAGAACAACT
Left flanking sequence: Indices 46503 -- 47002
CACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTACCCCCGCACAGGTTTCAGTCTTT
ATCTACGATCGGATCCTTTCTGAACCCCCGCTATCAAAGAGAATTTCCTATACTATAGTTGCAAG
TCTATTGTTGTGTTTTTGAATTAGGGGAATAAAAAAACAACAAGAATAAAAACCTGGCAAAGCTT
CAAACAAGGAGGTTGGGCTGTTCACTTCATTGATTTGACTCCACTTTACTTAAGATTAAAGATAG
GGGCCAGGCGGGCAGTGAAGGTATTATTCTCGCTTAGCGCTTGTGCTAAGGGTGGATCGATGTAA
TTGAGAAGGAACGTAGATCAGTACAGCAAGCGAGCAGCAAGCTACGGCTTTGACGCGCGTTAGCC
CTACTCCTATCAAAATGAAAAGCAGCAAGCGGAGCTTGAAGAAGCGAGCCCCTATCAGAGAAAGC
CATTGCGCGCTAGCCCCGGTTCCAAACCTGCGCACCTACAACGTA
Right flanking sequence: Indices 47078 -- 47577
CCCTAAACTACAAGCTTTGAAGCCCCTACTTTATGGGATATTTAAAGAAGCCCCTTTCTACAAAC
CCTTCTCTAATAGTTAGGAAGCGAAGCTCGAAGAGCTTTCTTCGCATGCTTGAGCGCATCCCCTT
TTTATTAGTAAGGTTGTCAAAAGGCTTTCCTTTAGTTCCTTTATGACTAAACTAATATAATAGGA
GTAGGGGGGCGCTAACGAGCAAGAAAAGGCCCCTTACTATAGATAGGCTAACGCGCCTTTACTAA
GCAACTTCCTCTCTACGCCCCCACAACGTAGATTGTAGACCAATAATAACTGATCTACGACCATA
CAACTCACTGATCTACGACCAACCTGATGCTACTCCTTTGGACCCTTCTTTCTCAAAGTCAAGTT
TCTCGCTTGTTGCTTTAGAAAGATTGCAGGGGTTGGTCTACGATCAGTCTTCCTTCAGCCGGCTC
CGCCCTATCTATTAATCTCTTTTTTTCAAATGGATATTTAGGGAT
Found at i:47056 original size:42 final size:42
Alignment explanation
Indices: 46997--47078 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
46987 GCGCACCTAC
46997 AACGTAGATCGTAGACCAAGAACAACTGATCGTA-GACCACAG
1 AACGTAGATCGTAGACCAAGAACAACTGATC-TACGACCACAG
* *
47039 AACGTAGATCGTAGACCAATAATAACTGATCTACGACCAC
1 AACGTAGATCGTAGACCAAGAACAACTGATCTACGACCAC
47079 CCTAAACTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.40, C:0.24, G:0.18, T:0.17
Consensus pattern (42 bp):
AACGTAGATCGTAGACCAAGAACAACTGATCTACGACCACAG
Left flanking sequence: Indices 46497 -- 46996
TGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTACCCCCGCACAGGTTTCA
GTCTTTATCTACGATCGGATCCTTTCTGAACCCCCGCTATCAAAGAGAATTTCCTATACTATAGT
TGCAAGTCTATTGTTGTGTTTTTGAATTAGGGGAATAAAAAAACAACAAGAATAAAAACCTGGCA
AAGCTTCAAACAAGGAGGTTGGGCTGTTCACTTCATTGATTTGACTCCACTTTACTTAAGATTAA
AGATAGGGGCCAGGCGGGCAGTGAAGGTATTATTCTCGCTTAGCGCTTGTGCTAAGGGTGGATCG
ATGTAATTGAGAAGGAACGTAGATCAGTACAGCAAGCGAGCAGCAAGCTACGGCTTTGACGCGCG
TTAGCCCTACTCCTATCAAAATGAAAAGCAGCAAGCGGAGCTTGAAGAAGCGAGCCCCTATCAGA
GAAAGCCATTGCGCGCTAGCCCCGGTTCCAAACCTGCGCACCTAC
Right flanking sequence: Indices 47079 -- 47578
CCTAAACTACAAGCTTTGAAGCCCCTACTTTATGGGATATTTAAAGAAGCCCCTTTCTACAAACC
CTTCTCTAATAGTTAGGAAGCGAAGCTCGAAGAGCTTTCTTCGCATGCTTGAGCGCATCCCCTTT
TTATTAGTAAGGTTGTCAAAAGGCTTTCCTTTAGTTCCTTTATGACTAAACTAATATAATAGGAG
TAGGGGGGCGCTAACGAGCAAGAAAAGGCCCCTTACTATAGATAGGCTAACGCGCCTTTACTAAG
CAACTTCCTCTCTACGCCCCCACAACGTAGATTGTAGACCAATAATAACTGATCTACGACCATAC
AACTCACTGATCTACGACCAACCTGATGCTACTCCTTTGGACCCTTCTTTCTCAAAGTCAAGTTT
CTCGCTTGTTGCTTTAGAAAGATTGCAGGGGTTGGTCTACGATCAGTCTTCCTTCAGCCGGCTCC
GCCCTATCTATTAATCTCTTTTTTTCAAATGGATATTTAGGGATC
Found at i:61752 original size:21 final size:20
Alignment explanation
Indices: 61734--61774 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
61724 CGTAGATCTA
61734 CGTTCTGTGGTCTACGATCAG
1 CGTTCT-TGGTCTACGATCAG
*
61755 TTGTTCTTGGTCTACGATCA
1 -CGTTCTTGGTCTACGATCA
61775 TAGTTGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (20 bp):
CGTTCTTGGTCTACGATCAG
Left flanking sequence: Indices 61234 -- 61733
CCAAAAATTGGATAGGGGTCAAGACGCTGTCGGGCCGCCGGCGGCTGACTCAAGTGCCCCCCGAA
CCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCCTGGGGTGGGGGTACCTATTATT
CGTCGGCGGTCCGGCGCACCCCTACTATAATTATACAAAGCCGCCCCCCAACTCACTTAAGGGAT
GCTGCTTAATTACGAAGGTTTTTATACTTAATCTAAGAGTTCCCTTTCGTTAAGCGCATTGAGCC
GGGAGTGGACATCATCATCATCTGCAGACAAATCCAGATCCTGTTTCATCATTGGCTTAGCTAAA
GTGGAATAGTATGACTGGCTTTCCGGAAAATGAGACGAAACCCGCTTTATCGATATGAGAAACAT
GCGCTCAAAAATACCTCCTAAACCCCCCTGCCAAGTGATCGAGTTTAGTCTGAATTTGCTGTAGA
AGTTGCTCCCGCTCCAGACTGACTTCAAGGTTGGTCGTAGATCTA
Right flanking sequence: Indices 61775 -- 62274
TAGTTGTAAAGATAAGATTGGGCAATTCCGCCGGTTCCGGAGCTTACCGCTCCGTGGGTATTATG
AAACCCAACCCCAGCTTTTTTAAGCTTACGTGCACCATGGTTGGGATTGGAAACTATACCAATAG
TAGCTCGGCATCGGGAATCAATGACTTTTTCAACACCCGAAGGTAGCCGCACAAGCCTAAGAGAG
AGTGTAGGGGGTGCTGGTTCCTTCATTATTTTAGCAAAAGTTCCTGCGGCTCGAGCCTGATCTAC
GACCACACAACGTAGATCTATGACCAACCTATTGCTACTGCCTTATACCTTATACCCAGACCACC
GTTTTCTTTGTCTGTTAAGCCTCGCAGCTATGGGACTTCCTAAAGAAAACTGCAATCGCAGTTTA
TCAACCACTCACAAGACCCCCGAGATCTTCGACTTAGCTCCCAAAGGTAATCCACCCGGCCCTTC
CCCAACCGGGAGCGGAAGATAACGAAAGGGAGACAAAGTCCTAAC
Found at i:73504 original size:21 final size:19
Alignment explanation
Indices: 73457--73497 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
73447 AGAGGAGAGG
73457 TTGGTCGTAGATCTACGTTCT
1 TTGGTCGTAGATC-A-GTTCT
*
73478 GTGGTCGTAGATCAGTTCT
1 TTGGTCGTAGATCAGTTCT
73497 T
1 T
73498 ATTGGTCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.28
20 1 0.06
21 12 0.67
ACGTcount: A:0.15, C:0.17, G:0.27, T:0.41
Consensus pattern (19 bp):
TTGGTCGTAGATCAGTTCT
Left flanking sequence: Indices 72957 -- 73456
TAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAA
AGCGAACAGCACCTTGGGCGGAGCTTGAAGAAGCGAGCCCCTATCAGAGAAAGCCATTGCGCGCT
AGCCTAGCTAGCTAACGTTTTTCAGCTGGCTGTTATGTTAGTTGTAGCGCGCCCTCTCTCCTTCT
CTCACTTCGGAAAGATTTAGCGGTATTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCG
GTGTAAAAGATTGAGTGGGATCTGTGAGGTTGGTTATAGTAAGGCCTGGCTTTATCAAACCAGCG
TACCGCCTCTATGATCTACGACCAACCTGGCGAGCGTTGCTCTTTATGGTCGGACGAATGAGAGC
CTGGAAACTCACTTACTTCCTTTGCAAGCACGCATACTCTTACTATTAACATAACGATAGGAATG
GAATGATGAACAGGCTAGGTACATGAGCCTTTCAGAGAGGAGAGG
Right flanking sequence: Indices 73498 -- 73997
ATTGGTCTACGATCAGAAAAGTCAGTGAAGCTGCTCGACCGTCAGGGAGAGGACATCAAGCCAAG
CATTCGTCCACCACGAAGCCTCAATGTCAATCGAAGTCGGAACAGGCTTATGCAGAGATCGTCTC
ACAACTACGGAAGAGAGGGCTAAAGGAGATAGGCTTGGAGGTTACGGATACGGCTTTGACGCAGG
GGCCTGTCTAAAACCTATGTCTATAGTTCTTCACTGGAGGGTGGTGCCTTGCTTTCCAGAGTGAG
ATTCCTCCTTGATAGTGGGCGAAAGAAGACGCAACTAAGTCGGTGATAGGTGCATCATTTGATTA
AAGAACATTCTCACTATCCGTGTGCTCAACCCAATTCACCCGATTGAGAGAGGAATGATTCTCGC
TTAGCGCTTGTGCTGAGGATGCTCGTAGATCAGTGAGTTGTATGGTCGTAGATCAGAAGAGACCA
AGTCGTTTACTTCATATTTCTCACTCTTGCCAACAATTGGTTCTT
Found at i:75826 original size:21 final size:21
Alignment explanation
Indices: 75808--75848 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75798 CGTAGATCTA
75808 CGTTCTGTGGTCTACGATCAG
1 CGTTCTGTGGTCTACGATCAG
*
75829 TTGTTCT-TGGTCTACGATCA
1 -CGTTCTGTGGTCTACGATCA
75849 AGAGAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (21 bp):
CGTTCTGTGGTCTACGATCAG
Left flanking sequence: Indices 75308 -- 75807
AACCATTAGAATGCATTCTCGCAGGAAGTAGCATACTCATGTTGCCTGCTTTCGTCTCGAAGGCC
GGTTCAGTAATAGTTCAAATCCTTCTAACTGGCTAGTGCATTAAGGTGGCATGTCTTACTCCGGG
CCAGCAGTGAACGAAGTGTTAAAGTAGAGAGAGCTAGCGTTCCGTACTCAGCCGGCCAAGCAAAA
CTCCAGCTAAGCTAATAGCTCTAATTGTGGGGATATCTAAAAAATATGCTCTTGCTTTTGCCTTA
CCTTCTATTATATTAGATTTAAAAAGGTTGGTCGTAGATCAGAGAAGGGCGTGTTCTCATCTTTT
GAAAGAAAGATGTACAGTGGCGGTCTTCTCGTCAATCTTCGGAGCTGAGCTAGGCACTTGCTACA
GGGCGACCGACCGAGACTCTTTCTTATTTTTTCGTAGTAGTGTTGAACGTTTTCACTCGGCTCCG
CCTCCCCTTTTTTTCTCATTTTGTTTGAGGGTGGTCGTAGATCTA
Right flanking sequence: Indices 75849 -- 76348
AGAGAAAAGGGTAGCCCTTTAGGACACTCTTTCTCTTAGATGAGAGTCTTAAGTAACTCAGCGCT
TCAAAAACAAGAGTAACGCTCTTGAAAGGCCCTAAGAAATAGGCTTAAGTCATCGCCGATAAGGC
TTTTCTTTTTTTCGGCTTGTTCCCGACGGTTTAGGCAAGCTGAAGGAATGATTCTCGCTTAGCGC
TTGTGCTAAGGAAGCTCCATATGTTGTTATCTGACCCTCTTTTCCAAGCCAAGAAAGCAAAAAGT
TCATCCCGGAAGTCGTTATGAAACAAGAAGAAAGGCGAGTGCTGTTGACGAAGGCTTTTTTGAGT
TCTCATTCCTGATGGCTTGATTGAAATAGAGTGCTTGGGCTTGCGATTGAGAAGATTCGGATAGA
GAGGTCTGTGTCAATTTAGTCAAGCTCGTTTCGCATCCCATGCTTTTTCCCCAGTCACTTTGGGA
ACACTACTTCTCTGAATCCACCGCATGTTGTACGACTAAGAATGT
Found at i:79625 original size:21 final size:21
Alignment explanation
Indices: 79599--79675 Score: 136
Period size: 21 Copynumber: 3.7 Consensus size: 21
79589 GCCCATCTCC
79599 CTGATTGTAGACCAAGAACAA
1 CTGATTGTAGACCAAGAACAA
79620 CTGATTGTAGACCAAGAACAA
1 CTGATTGTAGACCAAGAACAA
* *
79641 CTGATTGTAGACCAATAATAA
1 CTGATTGTAGACCAAGAACAA
79662 CTGATTGTAGACCA
1 CTGATTGTAGACCA
79676 CCCTTCCTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (21 bp):
CTGATTGTAGACCAAGAACAA
Left flanking sequence: Indices 79099 -- 79598
ATTCGAACCTTTGCATGCCGGTACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATACGGC
CTGTTTTGGACGATAGAACGGGGAGAGGGGGAAGGGAGAAGCAGGGATTGATAGCTTTCAAGAAC
CAGCATTCCTTCCTTAGCACAAGCGCTAAGCGAGAATCATTCCTTTCAAAAGATAGTAAATAGTT
TGGGCTGGCATAAAAGATTTGATTGAATGAACGCCACTACTTTTCTGATCTACGACCATTCCTTC
TCAATTACGTCGATCCTTGGTTGTTTTCAAACAAATCCAATGTTGGGCCGGTAATAGCCGAAGGC
AAAAAAGACTTTTATGGAAGAAGGGCGGGAAGGAAAAGAAGAAGGATTAGTAGTTGCCTAGCCAA
GGAACTTGAGGCCGACATTCAGAGTGCGGTCCCAGAGTTCAAGACGCCGCCTAAAACTAGTGTCG
GTCATAGAGAGGCATTGATTTTTCAATGAAACAAAGCCCATCTCC
Right flanking sequence: Indices 79676 -- 80175
CCCTTCCTTCCTGAGCCAAATACCGCTCCGTGGGGTATTGGCCGACTCCTTGCTGCCAGTCCCTG
TCATGCTGGCAAAAGCAGGGGTTTCGGCCGGTTTTACCTACTATTGGATTTGAACCAATGACTCT
CGCCGTATGAAAGCGATACTCTAACCGCTGAGTCAAGTAGGTCAAGCTGAGTCAAGTCAGAGAAA
ATAGACCCCTATATGAGAAAGCCGCGTAACCAGAGTTCCCCTTACTATACAAGGGGGGGGCGGAG
CGCTAAGAAAGAGAAAGCGTTATCACTATACGAAATGAAGCAGCGGCTAGCACGCTAAGATCAAC
CACTTATGCAGGGTCTACTTCTACTGGTGTTGGATTCTCCCTTGATTCGTCACATCATTGGAAAC
GGCATCTCTACTAGATTTTGGACAGATCCTTGGCTCGATAATGGCAGTCTATTGGACGCTTTCAG
TGATCGTGCTATCTATGACCTAGGGCAGGATAAAAACGTCCTTGT
Found at i:93793 original size:18 final size:18
Alignment explanation
Indices: 93753--93795 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
93743 AAAGCCCTGC
93753 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
93772 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
93789 CATAGTC
1 CATAGTC
93796 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 93253 -- 93752
AAGGTTTTTGGTGACAACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAAT
CCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTG
AATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTG
CTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGACGCAAAAAGCC
CCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCCGAAAAATCCC
CTACGCGACTGGCGCTTCAAAAGGCTCCGAAGGAAGTCGCTTTAGTTTTAGAATGTGTCGTTCAG
CGTCACGAAGGCTTGAAGACCTTTCTCATTTCAGTGCTCGCCTTCAGTAGGGGCCTTTAGTCTTT
TGATTAGAGTAGAGGGGTCGCGAGAGAGCAGAGCTAAAGCCCTGC
Right flanking sequence: Indices 93796 -- 94295
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAAAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:112514 original size:21 final size:20
Alignment explanation
Indices: 112463--112523 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
112453 GCTCCGCTAC
112463 AACGTAGATCGTAGACCAAG
1 AACGTAGATCGTAGACCAAG
*
112483 AAC-AACTGATCGTAGACCACAG
1 AACGTA--GATCGTAGACCA-AG
112505 AACGTAGATC-TACGACCAA
1 AACGTAGATCGTA-GACCAA
112524 CCTTCTCCGC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
19 1 0.03
20 6 0.18
21 21 0.62
22 5 0.15
23 1 0.03
ACGTcount: A:0.41, C:0.25, G:0.20, T:0.15
Consensus pattern (20 bp):
AACGTAGATCGTAGACCAAG
Left flanking sequence: Indices 111963 -- 112462
AGACCAACCTAGAGGCATTAGAGTTAGGAGCTGACGGCTGCTGGTTGGACTTCTCTTTGTTGGCT
GCATCAGTTGCACTGGAGTTTTTTGAACGAAGTTTGCAGTTTGACTTTGCATGACCTTGTTTGGA
ACAAGACGTACAATACCGCTCCGTGGGCTACGACCATCCTCTGGAAATGTTGGAATAGATCTCAG
AGTCAAAAATGGTACAATTTGTGCAATGCAAACAACGCATTTTTTGGAGCTGCCGCTCTTCTTTT
TGTTACCGTTCTTCTATAAAATAAAAACTCGAATTCGAAGGAAAGATCAGAGAGCTTCCCATTCC
GGAAATCAAGGAAGAACTCGAACAAGAGCTCAAAGGCATTCTTCTTTTTGTTGGTTCATAGTCGG
GTTCTGGTCTTGTTACTTTATGTTCCGGAGTCAATTGATCTCTCGATCAAGTCCTAACCAGAAAT
ATCTTAAGAGAAGAAAAACGAGAAATCGTTTGGTTGCTCCGCTAC
Right flanking sequence: Indices 112524 -- 113023
CCTTCTCCGCCGTTACGGAGTTCTTTTGCTCTAATCTCCGAAATCGAAGGTTTCTCGAGCGATCA
GAAAAGGTAGATCGGGAGTTAGTATTGATTCATGCAAAAATGCTCCTCTGAAGCTGGAGTAAGGC
TCGAGAGACCTAAAGCCACTCATTAAGGATTACCGGCCCGATTAGTCTGTAGGCCGCTTTCTTTC
ATAACAGAGAAAGGAATAACGGCCGGCATAGAAGTCTCTCGCGCGGGCGAAGGAGATGCATTTCT
TGTATTGGTGGTACTGGACAAGCTCTCAGGGAAGAATCTCTTTCTTCTTTCTGCCTTTCTTTCCC
ATGACGACTAGGAACGGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGC
TCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACATA
TTGGATCACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGC
Found at i:120665 original size:21 final size:21
Alignment explanation
Indices: 120633--120687 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
120623 AGCATGAGGT
120633 TGGTCGTA-GATCAGTTATTAG
1 TGGTC-TACGATCAGTTATTAG
120654 TGGTCTACGATCAGTTATTAG
1 TGGTCTACGATCAGTTATTAG
120675 TGGTCTACGATCA
1 TGGTCTACGATCA
120688 TAGTTGTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (21 bp):
TGGTCTACGATCAGTTATTAG
Left flanking sequence: Indices 120133 -- 120632
GTAGTAAATATGCCAATAACTTATGGGATTAAGCCAGGATGATTTATCAGATTGTCCTCTGATTG
AGCCCCCTAATCTAATGGCATTGAGTTGGTTTGGTTGGTCTACGATCTACGTTGTGTGGTCTACG
ATCAGAAAAGGGTGGTCATAGATCAGTTGTTCAAGGAGATCAGTACAATGACACAAGTTAAGAAA
AGGTTGGGCTATTTCATAGCGCCTGTGGTCTACGATCAGTTATTATTGAATAGTCTACTGTTTGA
AAGAGAGTAAAACGCCCAAAGATAACGTGTAGAGGAGATCGTCCACCAATAATAGGAGCCATCGT
CTTCTTACTCAGATAAGCAGCCATCATTAAATTAAGGCATCAGGCTTTACTAGGGATCCTAATAG
GGAACTTTCATTCCCGTGATCTACGCGCGTTAGCCCTCGAGCAACTTCCAGGAGATGGCGATTTT
TACATTCTACAACTCAGTATTGTGGATTAAAAACGAGCATGAGGT
Right flanking sequence: Indices 120688 -- 121187
TAGTTGTATGGTACTACAGATGAATATAATTCCATGGTGGTAAGAACCATGCGATAAAAGGCTTG
AACCATTGCACTAACTTCACTTTTGCATTTCATCATATAGAGAGCCGTCTAATTCTAGCGTGATC
ATCTATGACTATGAAGCCGAGAAAATACCGAACTCCAGAGTCAGAAGAGACAGGAGCCGGTCCCC
ATAGAAAAAAAGGGAGTTGGTCATAGATCTACGTTGTGTGGTCTACGATCAGAACAGTATTGGTC
GTAGATCAGGGAGAGTTGCTTACGAGGGGTGCTGTACGCTAACGGTAATTACCTCCCAGGGAAGG
GGAGCCGCATAAAAAGAGACTCTAAAAAGACTGTATTAGAGCAGCAGTCGGGCTCGTTGCAAGAA
AGGGTAGTTGAATGTGTTAGGCGGAGAGAATATAGCACGTAGAAGCTTATAGAGTCGGTAGTTCG
ACGGATTAATGCTTGCCAGAGAGAGTTCTATAGCCCTTAGGATAA
Found at i:122896 original size:45 final size:45
Alignment explanation
Indices: 122845--122978 Score: 259
Period size: 45 Copynumber: 3.0 Consensus size: 45
122835 GTCCTCAACC
122845 TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCTA
1 TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCTA
122890 TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCTA
1 TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCTA
*
122935 TGCACTCCGGGCAGACCGAGGTGCAAATCAAGTTCAGGCTCCCT
1 TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCT
122979 TCCGGGCGAA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (45 bp):
TGCACTCCGGGCAGACCGAGGTGCAAATCCAGTTCAGGCTCCCTA
Left flanking sequence: Indices 122345 -- 122844
AATAGAACCCGCCGTACATAAAGATCAAGCCCTAACGTCGTTCTGTTTGTGCCGCCAAAACAACA
ACGGTCATATAGAACACCAACGCTTAATTCCGACGGACGACTCAGACTAAACATACCAATAGTCA
CCTGATTCATACCCAGAAGCGATCCAACTATTAAAAGTGTTTCCTCAATTTGATCATCCTCCTGA
TAAAATAATGGTTTGGGGTAGTTGCGGCCCCCACCTCTTTTAAAAGTTTTTTTAATGTGCGAAGG
GAATATTCTGCCCCTTTAGGAGTTACTATATAGTCAGAAATGATACGAGCCCTTTGCTCTTCCCA
GAACGGATTCGGATCCCATTGGGCGATCCGCGTGACTATCTCCTCTTTCAGACCAACCAGCGTCT
GGATCTCCTCCAGAGATATATTAGAACATCCGTCCCGACTATATAAATTTAGGCGGGCGAGCAGC
TTCCCTTCCGCGGGAGAGAGGTCTTCTGGGTCCTTGTCCTCAACC
Right flanking sequence: Indices 122979 -- 123478
TCCGGGCGAAACCGCATTCCCGAAAGAGGGCGCGGCCTCGGTAGCTAGGAGGGCCCTCACAGCAA
ATCCAATTGCCAAGGCAAGCCCCCCGGAGCAGCCCATTCGGATGAGCAAGAAATAGAGGGCTTTA
GCCCCCAGAGAAATCCCCATTTTCCCAAGAAGTGAGAAAAATAAAGTAATCCACCCCCCCAAAAA
ACAAAGAAGATAACAAAACAAAAGGAGAGTGACAAACAATAAGCCAGGATAAAATGAACCTAAGA
TCAAATCTTTTACTCGACCTCCTCTTCTACCGTGACGAATCAATTGATTTAATGTAGGCATCGCT
CTTTCCTTTGTTCTTTTCCCCCCCGATTTTTGCCCTATCACTAGTGGTTACTCTCGATCCGAAGC
ACCCCTTTTCCATTCATAGAGAGACCCAATCGTCAAAATCAATAAAAAGGCCATCATGGACCAAG
ATCCAAACGGATCAATCTTGTTGGGAGGTACTGCCCAAGGAAAGG
Found at i:144817 original size:21 final size:21
Alignment explanation
Indices: 144765--144882 Score: 100
Period size: 21 Copynumber: 5.5 Consensus size: 21
144755 GAAAGGATGC
* *
144765 TCGTAGATCAGTGAGTTGTATGG
1 TCGTAGATCAGTTA-TTAT-TGG
144788 TC-TACGATCAGTTATTATTGG
1 TCGTA-GATCAGTTATTATTGG
144809 TCGTAGATCAGTTATTATTGG
1 TCGTAGATCAGTTATTATTGG
* *
144830 TCGTAGATCTACGTT-CT-GTGG
1 TCGTAGATC-A-GTTATTATTGG
* *
144851 TC-TACGATCAGTTGTTCTTGG
1 TCGTA-GATCAGTTATTATTGG
144872 TCGTAGATCAG
1 TCGTAGATCAG
144883 AAAAGTAGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
19 3 0.04
20 4 0.05
21 50 0.62
22 11 0.14
23 13 0.16
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.39
Consensus pattern (21 bp):
TCGTAGATCAGTTATTATTGG
Left flanking sequence: Indices 144265 -- 144764
GAATGAAAAGAGGAGTAATGCTTCCTAGCACGGGACACGGAATAGGACCACTTAGATCAAAATAG
CATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATTGAAGAGATTCGTTGACAACAGTAA
AAAGATGGGCGCCTAATTCCAATACAATAGGGGTCTATCAGTGCAAGTCAGCTGAACACCGTGAT
TGATGAGTGGGTAGGTGGGTTAGGTGCACCTCTCGCCCAGTGGGAAGTAATAAGGCGCGTTAGCC
CTGAATGAAGAAGTAGTGGGGCCCCCTTCCCGCGTATGCGCCTTTATTTAGATTCTTTCTATTTT
TGAATTCGGAGAATCTTTCTAAAAAAATCTCTCTGGCAAAACGCAGTTCGTCGATTTCAATCCAA
GGTGCACCTTGCCTTTTTTTCAGGTAGCTTTGTTACGCCTATTCAGCTAGTGGGGCATTGGTCAT
AGCCGAAATTCGTCGAAGGGATAAAAAAGAAAGAAGAAAGGATGC
Right flanking sequence: Indices 144883 -- 145382
AAAAGTAGAAGTTTTGTCTTTCTTTCAATCCAAATAAGAGAACAAAGAAACCACTAAAAATGAAA
GTTAGATAAAGAAGTTTCAGTAAGAACTAGCACTAGACTTCTCCCCCCCCTCCCTCTTCTATCCT
TTTGTTTGTGCTTCCACCCGGGCTTTTCATTCTGTTTTATAGAGACCGAGGAAATTCTTCTAATA
ATTAATGTAGAAAGGCGAGGCACTTTCCCCGGCATACGGAAAAAAAAATCCAGGATGACGGCTTT
CAAAGGACGAGTACGGGACGGGGAGGGGGAGGCTAAGTGAAATAATATACTGGTGCTACTATAGA
ATCTTATTACTCACGCACGGCACACTTTCTATATCTCCTCCGTCTACAAGGTGAACAGCTTAGCT
TACAGCACAGCGTGTTCGCCACCACACCGGCTGGCTGGTGCATTGGCCTTACCGTAATAGGGCCG
AGAGGTATGACCCTTCGATTAGAACGCCCCGTATTTCGTGACACG
Found at i:148341 original size:17 final size:18
Alignment explanation
Indices: 148310--148344 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
148300 ATAGTAAGGC
148310 ACATGTTCGAAAAACGTG
1 ACATGTTCGAAAAACGTG
*
148328 ACATG-TCGAGAAACGTG
1 ACATGTTCGAAAAACGTG
148345 GAATCATCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (18 bp):
ACATGTTCGAAAAACGTG
Left flanking sequence: Indices 147810 -- 148309
TTTATTCTAGCTCCGATTCTGTGTAACCTATATGACTAATTGGGGACAATCTATTATTCTTGTAA
GAACTGGTCCGGAATATTTAGGAAGAATTCGGTTGGGCAAAAGCCGCCTATCATGTGTATCCCTT
TGAGTTTCGAAATACGAACACGGGAACAAGTAAACTTCCCTCGAGAATGGAAGCTAGAGAACCTA
AGTCTGAAGAAGAGTCTTGGCTTGGTTCGAAGTAGAGGGAGAGAGGGATACCACTGAATCAGTTG
GCTCAGCTCTGAAAACTGACCGACGAGAATATATCTTCACAAACCTGCGAAACTGCCCCTTAAGC
TGATCAAGCTGCTGATCACTCTGGTCACCGGGGTCTTGCTGACTCTATTGAATCGGAGAATTCTG
ATGCTGTCTCACATAAACTCCTCCATAGTTCTCCCCCTAAGGTGAGACAAGGGAACATAATGGGC
CCACCATCACGGGGAATCTCAAAGCCCCGAGCTCCATAGTAAGGC
Right flanking sequence: Indices 148345 -- 148844
GAATCATCGTGTAGAAGGATCATTAACACTTGTAGCCCTTTTGAGACGAGGTAGCTTGCTTATTC
ACTCACTCAAGAAAACACACAGGGTGAGATGTAGGGCTCCTGTGCAGGGGATGGAATGTGAGCAA
AGCACGTGCATCCGAATACTCTGAGGTTGGGCTATTTCATAGCGCCTGTGGTCTACGATCAGTTA
TTATTGGTCTACAATCTACGTTCTGTGGATCGATGTAATTGAGAAGGAACGTAGATCAGTTGTTC
TTGGTTGAATATTGAGTTCCGCTTAGGCTACGTGTTCTGTTCACGCGCTACTAAGCCGCACACAG
GATCTTAGACAGGTTTCGTCCCCTTTCGGGAACACCTTCTTACTAGTAGGGGCTAAGCCTGATGC
AAATATACCGAAAAAAATGACTATGGTCGATTCTACGAAGGGTAGATTCGCCCCTTATGTTATGG
CTCGTCTCGCGCTTAGTCACTCGCGGGATTCGGATAGGGGAGCAG
Found at i:156398 original size:39 final size:39
Alignment explanation
Indices: 156342--156420 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
156332 CCCATCCTTC
**
156342 AATATCATGATTGGGTCGACCGGGCCAGATCATGAGTGA
1 AATATCATGATCAGGTCGACCGGGCCAGATCATGAGTGA
156381 AATATCATGATCAGGTCGACCGGGCCAGATCATGAGTGA
1 AATATCATGATCAGGTCGACCGGGCCAGATCATGAGTGA
156420 A
1 A
156421 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (39 bp):
AATATCATGATCAGGTCGACCGGGCCAGATCATGAGTGA
Left flanking sequence: Indices 155842 -- 156341
AATAAGTGAAGAGCATTCCATAGCTATCGGATATGGGCCGTGGAGCCCGGGAGGGATTTATCTGT
ACGTTCTAATTTGATTTCCCCGGTGTTTGCTTGTCAGTCTTTTAGGTGCCACACCTCTTTCTCCC
CAGTAAATACGTCGATTGTTGAAGGTTCTCACAGGTGCTAGTTGTCGGATTCGGATGTTCCTAGA
GCACGATTCACCTCTAGATATGAAATCACTGCTTATATACCTTTCACTATAATCTACAAGAACAT
TGTGTAGTTGGAGGAAGGCTTCATTTTAACAACCTGGTGTGAGATATCACATTGTTCTGATCGTA
GACCATACAACTCACTGATCTACGAGCATCCTCAGCACAAGCGATAATAATTCCTTGTGCAGTAA
AGAAAGCAAGTGAGGCGGGCCCATTCGAAGTAACGTAACAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTCGCGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 156421 -- 156920
TAGAAAATCGAAAACGTACATAGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTTTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTTCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:162976 original size:23 final size:23
Alignment explanation
Indices: 162946--163030 Score: 161
Period size: 23 Copynumber: 3.7 Consensus size: 23
162936 AAACATAAGG
162946 ATGCTCGTAGATCAGTGAGTTGT
1 ATGCTCGTAGATCAGTGAGTTGT
162969 ATGCTCGTAGATCAGTGAGTTGT
1 ATGCTCGTAGATCAGTGAGTTGT
162992 ATGCTCGTAGATCAGTGAGTTGT
1 ATGCTCGTAGATCAGTGAGTTGT
*
163015 ATGGTCGTAGATCAGT
1 ATGCTCGTAGATCAGT
163031 TGTTCTTCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.34
Consensus pattern (23 bp):
ATGCTCGTAGATCAGTGAGTTGT
Left flanking sequence: Indices 162446 -- 162945
TGCTCTCCGAACCAAGCATGCAAAGAATTAATTTGTGAATGAGAAATACAAGTTATCTATATTTA
TAGGAATCAATGGGAGAATGTCAAATTGCTCAAGGGGGCTTTTACAAAGCGCCTAACAAATTGAT
GGGAATAGGCATCAATAGCACTTGAAAACCATTCACTCTTTTCTCTATTCTCACGGAGGTCATGC
AAAATCGCATCCAAAGTGGATGGATTTGATGATTCTCCGTGCACCCACTGGCCCAATACATGGGA
CTCCTCTTCATACAACTCGAACCCGGTATCCTTAGCAATGTTAGTTACCTCCTGCTCTATTTTTC
CTTGGGCTGAAGCTACCTCCATTTCTCTGTTTGAAGATAAAACGGTGTTAATATCTGAAACTTCA
GATTCAGACTCTGAGGTTTTTTTTTCCCCACTATGATGCGAAGGCCCCTCCCCCTCTTCCTTAAC
CCGGGGGGGAGATAAAGTGGGGCAATTTAGGTCCAAAACATAAGG
Right flanking sequence: Indices 163031 -- 163530
TGTTCTTCATTCACGGCACTTTGAGAAGTGCATTCGGTAGAAGATGCATAAGGCTTGAAGACCTT
TCGTAGATAGATCCTAGTGAATCGTATTTACGTTTTTTCATTACTTATCCGTCTTTGTTCTTTCG
CTCCTTTATCGCGGAGCCGCATACCGGAAAAAAAAGAGAAGCCCTTATTCGGATTCGAACCGATT
AAGCCTATTTCTAAAGGATGGTCGTAGATCAGTTATTGGTGACTCTGATTTTTGATGCGCTGAGT
TATTTAAGTAAGCAATTCTGGATATTGTTATTCTAAATTCTTTTATTGTCTTTCTTTTCGACCTT
CTACCCGGGTACACGGAACACTAACTGAATCTCTGTTCAAACAAAAACGACAAGCAAACCCGAAA
ACGAAAGGGTCACCTTCTCTAGCAAGCAAGTAGACTTTTCTCTGGGTAGCAAAGCTAGCTCTTCG
TATCATTGGCATTGGGCAGGTGAACTTGGCTACACAACAACTCTT
Found at i:175048 original size:21 final size:21
Alignment explanation
Indices: 175019--175074 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
175009 CTTGAACAAC
*
175019 TGATCGTAGACCACAGAACGTA
1 TGATTGTAGACCACAGAAC-TA
175041 -GATTGTAGACCACAGAACTA
1 TGATTGTAGACCACAGAACTA
175061 TGATTGTAGACCAC
1 TGATTGTAGACCAC
175075 CCTTTAGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (21 bp):
TGATTGTAGACCACAGAACTA
Left flanking sequence: Indices 174519 -- 175018
GTTGCGTAACTATGATCAGGTAGAAAGCCTCAGTTAGAGTGACCGGGCTGGCTATGAAGTTAGCC
CATTCGGGTTTACTTGGGTTGAGCAGACGATCATGCGGACTCTTTTTCGTCTTAAAGATCGTCAG
CTCTTGCTCTCTTCTCTTTGGCAGTCAGATAGCGGGGAAGGACAGAGGGTCCAAAGGAGTAGATT
AGATGTTCTGCTAGGCTATAGGACTAACAGCGGCAGCTGCAACCTATATATCCGATGCGCTTATC
TGCTGTAGTTTATGTCCTTCTGAGTACTGGTATTAAAATAAAAGAAATTCTTAAGAAAAGATGCA
GTAAAGAGAAGAACTCCTAGGGCTCTCTTCTCATAGCGTAGCAAGCTCCCCCTCTATCATCGTAT
AAGGGGAGCGCGAGAGCAGCGTAGCCGCACTATCCTTCTTTTAGGACTTACATGAGCAGACCGAA
CAACTATGATCTACGACCACTATTTTTCTGATCTCCTTGAACAAC
Right flanking sequence: Indices 175075 -- 175574
CCTTTAGTGAGGACACCGCCTCTCTTCTCTTATCCTGGGTATCTGTTGTTCATTTTTCGGGTATC
TGAATCATACGATTATGAAAACGATTTAATTATGAATTCTACGTGTAAGAAGTTCGTCTGGCCTT
CCTTTGGGGTAAAATCAATGTTGATGTTGATTAGAGGCCTTATCCCACTTCGGGATAATTCGGAT
GACGATACTGGTACAAACAATAGATTAGAAGCCTTTTCCCACTGGAAGGTGAAAGAAGTAGTGGG
TTTCCGAAAGACAGCCTTCTCTATTCTATATTTTATGGCTTGACTTTCGAAGTGGATCCCATATA
AGAAGGGGGGCTCTCAGAGCAGATTCCGGTTTTTGAATCAGTGAATACTTAGCCAGGAATGCCAG
ATCCAGATAAAAGGCGCTATGAAATAGCCCTGTTTAGCAAGGAATGATTCTCGCTTAGCGCTTGT
GCTAAGGTTTTTTTTATTCTGGGATCATATTTGAATGGTAGACAA
Found at i:177697 original size:21 final size:19
Alignment explanation
Indices: 177673--177720 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
177663 TATGATCGTA
177673 GACCAAGAACAACTGATCTAC
1 GACCAAGAAC--CTGATCTAC
*
177694 GACCACAGAACGTAGATCTAC
1 GACCA-AGAACCT-GATCTAC
177715 GACCAA
1 GACCAA
177721 CCTCCATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 17 0.71
22 5 0.21
ACGTcount: A:0.42, C:0.29, G:0.17, T:0.12
Consensus pattern (19 bp):
GACCAAGAACCTGATCTAC
Left flanking sequence: Indices 177173 -- 177672
CTATATTCTTTACGCGAAACCTGAGAAGGAATGATTCTCGCTTAGCGCTTGTGCTGAGGATGCTC
GTAGATCAGTCGGGTTGCCGTTCAAGTTAGTGAAGTTATTTCATTGTAATTAGACCTAACAAGAA
CGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGTTCTACCGAA
CTGAACTAAGAGCGCTTTCTTATCACAGTAGATACGACTGTAAAGAAAAGGATTCTTTTTGTACC
CGCATATAGTATCATAAAATGAAAGATTATGTATGTCCAATTGGAATCGATCTCAATGGATCCCT
CGTTACTGCCCCTCCAGAGGAGAAGTAATAGGTAGGGATGACAGGATTGGAACCCGTGACATTTT
TTACCCAAAACAAACGCGCTACCAAGCCGCGCTACATCCCTTTCAACTGGTCTACAGTGTCATTT
TGTCAAGTAAACTTCCCTGCCCTGTTTTCCACATCTATGATCGTA
Right flanking sequence: Indices 177721 -- 178220
CCTCCATCGATATAAAATCTCTCTTGCCATTTCTTCTTTTTGGTCTTTATTGATTTATATACTCA
TCATCATCCCGCCGCTCCTACCAACGCTTACTTACTTATGAGCAAAAGGGTTATAAATAATCAGC
CCTTTGAATAAGCGGGGCTTTCCCGATAGAAATATTTGCATGCGAGAGAGATCCCAATTCCGTGT
ATCCGGTTAAGCAAGCCCTGCCGCCAGCTTCCACCCAGACAAAAAACGTGAGCGCCTAGCGCGAA
AGGTTGCTTTACTAATAAACTAATAGGCGCGTTAGCGCTTTTGTTTTCAATAAGGGGCGGAGCTT
GAAGAATAAAAACCTTTTTCTTCTTCCTATTTTATTTCTTTCTCAATGATATCCGACGATCAAGA
CAATTCCCGTGAAACTCTTTCATTTCATAGAAGTGAATTCTTATTCTTACGAAGCAAATAGCATT
TCCTATTGATTTGTCCCCTGGACTGGACCTATTCTGATTCTTAAT
Found at i:179144 original size:21 final size:21
Alignment explanation
Indices: 179111--179167 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
179101 CTAAGCAAGG
179111 TTGGTCATA-GATCAG-AGTTC
1 TTGGTC-TACGATCAGTAGTTC
*
179131 TGTGGTCTACGATCAGTTGTTC
1 T-TGGTCTACGATCAGTAGTTC
179153 TTGGTCTACGATCAG
1 TTGGTCTACGATCAG
179168 GCCCAATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 3 0.09
21 25 0.76
22 5 0.15
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (21 bp):
TTGGTCTACGATCAGTAGTTC
Left flanking sequence: Indices 178611 -- 179110
CCGCAAATATCGATCGAAACTTGAACCCTTGTATAGGTATGCAATTTAAGAAAGCACAACAATTG
AAATGGGTAGTCCGTATTGGTATCAGATCTATTCCCATGTTCCGATCTTTCCATTTTTTTTACCC
ATTTCTTGGGTAAAGTCTCCCAACTATATTTGAAAATGGATTGGTTATCCATAAAGATAAATAAA
GCTTTCTTGTAGTTCCGCTTCTTGCTCTAAAAATAAAGAAAGACTTGTCGGAAATCGCCGGTTGG
GTTGGTCCGACCAAGAAAGGCATGGGAGTCTTTGGGCATTGCTTGGGCCGAGTTAAGTAAAGACC
TGAGAAATCATCCTACTGATCGCGCGTTTAGCCCTCACTGCACACTTTCTATATATCTGTCTCCA
TCCAATCAAACGTTAGACCCTCGATCAGTGGAGCTCGCCTTCTACGGGACTGGGCCCATCCCACT
CTTTGAGTAAGGCTACTATATCCGCGTTGACTGGCCTAAGCAAGG
Right flanking sequence: Indices 179168 -- 179667
GCCCAATTGTTCAATCCGGAATCCTTACACGCGAAATAGGGAAGGGTGGGTAACGTTATATACGC
AGCAACAGTTGGCTCTGTCTTGATCTCCGATTGACGAGCGGGAAGGGGGATGAACACGTGAATGC
ATTCATCTTATTGTAAGATACCGAAGCGCGATAGAAAACAAAGCAGAAAGAGGACGATCCTATGA
TACTAGGACCAACCTAGTGGTAACGGATGTGATCGTTCGCTCCGGTATATTTGATTGAAACCAGT
TGCATTTTCTCGATAAGATCGATAGCAACTAACTCTTATCCAAGGAGCGGCATAAAATAGGAGAG
CAGATCTCATTTCCCTGCGTTTTTTGATAGCATCTTGTCGAAAACCCTAACGCCAGTCGGGTTAT
CCTATAGGCTTCATGGGAAAGAAAACATGCCCCGCTCCTTGAGTCGGCCGGTCCTAAGAAAGAGT
AAGCATCGAGCTGCCAGATATGGAAAGCTATATCAGCGCCTAAAA
Done.