123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_060346
Parameters: 2 7 7 80 10 50 500
Length:  563202

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83353--83607	127	2.0	127	100	0	510	32	14	22	30	1.93
86700--86956	127	2.0	127	100	0	514	28	17	16	38	1.91
125046--125084	20	2.0	20	89	0	60	28	15	30	25	1.96
141554--141808	127	2.0	127	100	0	510	29	21	23	24	1.99
142089--142343	127	2.0	127	100	0	510	36	16	23	22	1.94
143427--143472	21	2.2	21	96	0	83	21	23	4	50	1.67
144351--144411	8	7.6	8	92	0	77	13	18	21	47	1.82
158875--158908	18	1.9	17	88	5	50	67	0	8	23	1.18
190974--191227	127	2.0	127	100	0	508	44	12	18	25	1.84
191810--192064	127	2.0	127	100	0	510	30	14	21	32	1.93
192339--192593	127	2.0	127	100	0	510	31	16	20	31	1.95
195165--195420	127	2.0	127	100	0	512	24	21	22	32	1.98
261753--262008	127	2.0	127	100	0	512	33	17	30	17	1.93
261946--262202	127	2.0	127	100	0	514	38	14	31	15	1.87
267636--267890	127	2.0	127	100	0	510	18	20	27	34	1.95
267877--268131	127	2.0	127	100	0	510	21	28	26	23	1.99
278246--278499	127	2.0	127	100	0	508	25	22	22	29	1.99
278607--278860	127	2.0	127	100	0	508	36	30	12	20	1.90
284269--284522	127	2.0	127	100	0	508	23	26	18	31	1.97
284586--284649	18	3.8	17	87	6	78	34	6	21	37	1.79
284600--284657	18	3.2	18	92	0	98	34	6	24	34	1.82
284586--284657	36	2.1	33	89	7	108	34	6	22	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284531--284785	127	2.0	127	100	0	510	31	12	19	36	1.90
284713--284776	18	3.8	17	87	6	78	34	6	21	37	1.79
284727--284784	18	3.2	18	92	0	98	34	6	24	34	1.82
284713--284784	36	2.1	33	89	7	108	34	6	22	36	1.81
284762--285018	127	2.0	127	100	0	514	30	18	21	29	1.97
286925--287178	127	2.0	127	100	0	508	29	22	24	24	1.99
298304--298557	127	2.0	127	100	0	508	22	26	22	27	1.99
298505--298759	127	2.0	127	100	0	510	28	24	20	26	1.99
302276--302318	21	2.0	21	86	8	61	34	25	20	18	1.96
302996--303376	127	3.0	127	94	3	644	31	14	12	41	1.83
353269--353308	21	1.9	21	89	0	62	47	10	27	15	1.77
363849--363890	2	22.5	2	81	13	54	50	0	2	47	1.14
363846--363891	11	4.4	11	79	20	62	52	0	2	45	1.13
405494--405748	127	2.0	127	100	0	510	28	25	18	28	1.98
406053--406310	127	2.0	127	99	0	509	32	25	19	22	1.98
406722--406984	127	2.1	128	99	0	519	28	22	19	28	1.98
408037--408291	127	2.0	127	100	0	510	29	27	12	30	1.93
408853--409107	127	2.0	127	100	0	510	32	20	15	30	1.94
410872--411128	127	2.0	127	100	0	514	25	26	24	23	2.00
411163--411417	127	2.0	127	100	0	510	28	11	23	36	1.90
412067--412321	127	2.0	127	100	0	510	29	18	10	41	1.84
412512--412766	127	2.0	127	100	0	510	29	21	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413920--414173	127	2.0	127	100	0	508	38	16	22	22	1.93
451612--451642	16	1.9	16	93	0	53	64	16	19	0	1.29
455607--455861	127	2.0	127	100	0	510	25	22	19	32	1.97
456415--456669	127	2.0	127	100	0	510	30	24	13	31	1.93
465942--466327	127	3.0	127	89	3	530	31	20	15	33	1.93
465990--466371	127	3.0	127	89	3	531	29	20	14	35	1.92
475701--475954	127	2.0	127	100	0	508	33	17	16	32	1.92
477448--477701	127	2.0	127	100	0	508	31	17	29	21	1.96
484721--484975	127	2.0	127	100	0	510	26	20	24	28	1.99
484923--485176	127	2.0	127	100	0	508	27	22	26	22	1.99
487936--488316	127	3.0	127	89	3	529	31	19	15	33	1.93
487979--488359	127	3.0	127	89	3	529	29	20	14	35	1.92
518595--518848	127	2.0	127	100	0	508	31	13	28	26	1.94
518785--519038	127	2.0	127	100	0	508	23	17	33	25	1.96
520417--520670	127	2.0	127	100	0	508	27	17	25	29	1.97
521296--521550	127	2.0	127	100	0	510	33	23	15	26	1.95
530185--530565	127	3.0	127	94	3	644	31	14	12	41	1.83
533992--534055	21	3.0	21	97	0	119	37	25	9	28	1.87
550984--551239	127	2.0	127	100	0	512	17	20	27	33	1.96
551226--551480	127	2.0	127	100	0	510	21	28	26	23	1.99
562882--563137	127	2.0	127	100	0	512	15	31	14	38	1.87

Tables:   1

The End!