Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_066488
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 457380
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:8585 original size:22 final size:23
Alignment explanation
Indices: 8560--8604 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8550 CCCACCTGAG
8560 CATTCTACTT-CCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
*
8582 CATTCTCCTTCCCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
8605 TTACTAGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.36
Consensus pattern (23 bp):
CATTCTACTTCCCCCCTATTGGA
Left flanking sequence: Indices 8060 -- 8559
CTAATTTATTTTTGCACTATGTTGAGATTCTTTTCTTGCCGGTGTGGTAGATAAGAATGCGCCGA
ATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTAC
CTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGTG
AGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTAC
CTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTCC
CTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTAT
AAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTTC
AGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAG
Right flanking sequence: Indices 8605 -- 9104
TTACTAGTCTCGCCCTCTAGTTACATACTATCTTCTTACGTTACATACTATCTTCTTACAGTGGA
TCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGGGCAATG
CCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATCTTATAG
GAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAGTAGAGT
ATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGTATTGTC
ACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTGAGTGGC
TGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCACAGTCA
CCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAG
Found at i:8647 original size:20 final size:20
Alignment explanation
Indices: 8624--8663 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8614 TCGCCCTCTA
8624 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
8644 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
8664 AGTGGATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (20 bp):
GTTACATACTATCTTCTTAC
Left flanking sequence: Indices 8124 -- 8623
AATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTA
CCTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGT
GAGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTA
CCTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTC
CCTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTA
TAAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTT
CAGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAGCATTCTACTTCCCCCTATT
GGACATTCTCCTTCCCCCCTATTGGATTACTAGTCTCGCCCTCTA
Right flanking sequence: Indices 8664 -- 9163
AGTGGATCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGG
GCAATGCCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATC
TTATAGGAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAG
TAGAGTATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGT
ATTGTCACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTG
AGTGGCTGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCA
CAGTCACCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAGGAATCGAACCTAGT
CATAGTAAAATGATCATTCAAAGTAGACTTTTGTCATAGGGCAAA
Found at i:64230 original size:19 final size:19
Alignment explanation
Indices: 64202--64249 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
64192 CGGTAACTAG
*
64202 AGATTGAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
*
64221 TGATTCAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
64240 AGATTCAATA
1 AGATTCAATA
64250 TCATAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (19 bp):
AGATTCAATAATAGAAGCC
Left flanking sequence: Indices 63702 -- 64201
GAAATTGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCGAGAAT
TTCATGTGATTTAGTAAACAGAATATAGATTCCATAATTGCTAGATCGATCTGTAGGGATTGATG
AAGAGTGAGCTGATAATGGAATTTTTCTTCGATAAACAGGAAACTTAAGATTAAGATGCTCCGGA
ATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTCGAGGGATTTTGTAGG
TTCATTAATCAAGGCTTGGCAGAAGAACTTGAGAAGTTTCCAACAATTAAAGATCCAGATCACGG
AATGGATACGAAATCTAGAGGCGGCAGGTAAACTAGGGAAACAGAAACTATTGTTTTTGGTGAAT
TATCAGTGTGCAGATGAATTTCATCCACTGCTATTGAAGAAGCTTTTAGAGGGATATCTTGTCTT
GTCGGACTAAGAGCTCTTATCTCTTTCTTTTCCCACGGTAACTAG
Right flanking sequence: Indices 64250 -- 64749
TCATAAGAAAATAGAGATTGTAGCGTAGAGTCAGGCTATCCCATGTTTGCAATAACAGCTTTGGG
ATCTTTCCTGTTAATGATGAATAGCTTGCCTCAACAGAGAATCAGAATTCTTTTTATTCGGTATA
ACAACCTTAAAAACGAATCGATCTAGATGCCCCGCTCTTGCCATCTTTGATGGAATTGAATCATC
AACTGACTTACTTGAGGAATAAAAAAATCTGCAGCTTTCGATTCTTGTCTATCGGATTCTATTGA
GAAGAAGGGACAACCATCCATCCTCCCCGAAACTAGTTTAGTGCCTGAACGAGATTGGTGGCACT
TATGACGAGAAAACAAACTCTTTCTTCTGTTCAAAAGCTAGTAGTGCCGTAGTGCCAATCTACTC
CGAAGAACAAGCTTCTTTGCAAAACTACTTTCTTCTACGGAGCTACCTCCGTCTCACTCTTGTAC
CGAATGCTACCTGGCATAACATCCTTACTTAAATATCTTCCGCTC
Found at i:99679 original size:13 final size:13
Alignment explanation
Indices: 99661--99686 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99651 AATTGGAACC
99661 ATTAACTATATTA
1 ATTAACTATATTA
99674 ATTAACTATATTA
1 ATTAACTATATTA
99687 TTTGTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTAACTATATTA
Left flanking sequence: Indices 99161 -- 99660
CAAAACAAACCCTAGTTTGAGGAAAGAACTGTGGGTTCTCAAAATCAAGTATCGCCGGGCCTAGT
TATTCTCTTGCCCCAACTTATGCGGGGTACGAATTTTTCGAGTTGGATCAGTACTATAAGCCTAA
GTATTTTATTGATCAGGCGGCACCCAGATTTGAACTGGGGATAAAGGATTTGCAGTCCCCTGCCT
TACCGCTTGGCCATGCCGCCAAATCCGATCTAAAATCGAGAAAAATCTTATTCATCCACATTATT
TTACTAATTATTGTTCGTAGGAGGGGATTACTAAACCCTTTTTTTTTCGTCGAATCCCTTTGTAC
TTATCCCTTTCCAATCCCTTTGAAGAAATTCATTCCGGTTTTTTTATTGGACCCAGTTTTATTCT
CTTCGATTGATTGTATCTCAAAACACACACTGCTTAAATACCTTCTCTTTCTATTGAAAAGAGAA
AGGGTTTCCAGTCACAGACTGAAAAATTTAGGACAAATTGGAACC
Right flanking sequence: Indices 99687 -- 100186
TTTGTTATTTTGATATTTTCTATTTGTTAGTAGTGAACGGTTCTAAAATGGGTATTGTATCCCTT
TTTCCTCGATCGTCAACGAGCAAGAAAACGGATGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTC
AATCCGGTGCTTGTTTGGATGTAAGAGATCTCGTTTGCTGGCCGGGCCCTTCCATGAGTTTAGAT
CTCTATGTATGAATCTCTTATTCAATCCCATACTTTTTCTCATTTCAGAACGATCAGCATACTGT
GTGACTTCTGCGTGACAGTTCTTGCATTTCGTTTGTTGCTTTGCATGAACATTTAGATATTGGAA
AGCCCTTAATTAGGAATTTCATAGATAGAGAAGGACGGGAAAAAAGAGAGAGACTGACTAACTAC
CCGGATCAATGCTGATTGACGACTGAATAAATAGCCGGAAGCAACAACTGCACGAGAGAGAAAGA
GCGGATCCAACTAAGGAAATGCAGTACCTGTTCTGCCGGAGCTAA
Found at i:113841 original size:15 final size:15
Alignment explanation
Indices: 113821--113857 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
113811 ATTCCATGTG
113821 CGTTCTTAGGGTCAA
1 CGTTCTTAGGGTCAA
113836 CGTTCTTTAGGGTCAA
1 CGTTC-TTAGGGTCAA
113852 -GTTCTT
1 CGTTCTT
113858 GTGGCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 9 0.43
16 10 0.48
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (15 bp):
CGTTCTTAGGGTCAA
Left flanking sequence: Indices 113321 -- 113820
TACTGATAAATCTTCTACTGATTAGTGTGCCCATGCGGGATGAACCAACCCTCAAATACTATACT
ATAAACTGGACCTTACCAAAGAAAGTATGAAAGAAGATCTTCTACTGATAGCGAAGATAGAAAAT
ACCCACTTTAACGAGTTTTTACAACTATTGTGGCAGACGACACATCCTTAACCTGAAACAGGCCT
TTCATTGCGTTTCAGGAGCCGTACAATACAATACAATAGTAAATCATCTGCTGTAACTTCAATCA
GTGAAGTCTCATATCAATGTTTCCTTGCCGTAGTGCATTCTCGATGCGCCACCCAATCCAATCTA
ATTTATATGATGGGTTCCAGGCTCCCCTCCTACGCCAATACATAGACCCTGCCTCTACTTAGAAA
AAGTACTAATCGTGGACCCTCCTTACGACCCTACAGCAACTCCTATAGCCCTCGCACCACCTGAC
GCTCTAACCCTTGAAATTCTATCTTATTTTATAGAATTCCATGTG
Right flanking sequence: Indices 113858 -- 114357
GTGGCTTAGTGCTTTAATACTTCTTTTTGCTTAGTGCTATTTCTAAACTTCTTAGGGCGCAGGGC
TTTTAGAGTTATTAGGGCGGGTAAGCGACAAACAAAGCTAACTACTTTCCCAGGCTTTACGTAAC
TTTTTGAATTTAAAGAAGAAGCTCACGCTACAGGAGCTGGAACAACTAGAGCTTACTCTGGATCC
GTGCTCGCTACAGGGATTTATCCTCCATTTTGATATTCCAACCTCGCATATTCATCATATTATAT
CTTTTCCTACGATACCGTTTACCTTCTAGTTTTACCTATCTTCTCTTCGGAAAGAGTACCTTGTC
CGAGCAAACCAACACCTTATTCTTAAGGATGCGAGCCAGGAACTACGTACAGAGCTCTACCACCG
GGCATACCAATACACTAAGCTAAGCAGGAACAAAGCAAGCAACTAAGTCAGGTGGGGGTTTACTA
CTAGAGTTAAGCACAATCCTACTTTCCTTAATCAATCGATATTCC
Found at i:113847 original size:16 final size:16
Alignment explanation
Indices: 113821--113857 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
113811 ATTCCATGTG
113821 CGTTC-TTAGGGTCAA
1 CGTTCTTTAGGGTCAA
113836 CGTTCTTTAGGGTCAA
1 CGTTCTTTAGGGTCAA
113852 -GTTCTT
1 CGTTCTT
113858 GTGGCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (16 bp):
CGTTCTTTAGGGTCAA
Left flanking sequence: Indices 113321 -- 113820
TACTGATAAATCTTCTACTGATTAGTGTGCCCATGCGGGATGAACCAACCCTCAAATACTATACT
ATAAACTGGACCTTACCAAAGAAAGTATGAAAGAAGATCTTCTACTGATAGCGAAGATAGAAAAT
ACCCACTTTAACGAGTTTTTACAACTATTGTGGCAGACGACACATCCTTAACCTGAAACAGGCCT
TTCATTGCGTTTCAGGAGCCGTACAATACAATACAATAGTAAATCATCTGCTGTAACTTCAATCA
GTGAAGTCTCATATCAATGTTTCCTTGCCGTAGTGCATTCTCGATGCGCCACCCAATCCAATCTA
ATTTATATGATGGGTTCCAGGCTCCCCTCCTACGCCAATACATAGACCCTGCCTCTACTTAGAAA
AAGTACTAATCGTGGACCCTCCTTACGACCCTACAGCAACTCCTATAGCCCTCGCACCACCTGAC
GCTCTAACCCTTGAAATTCTATCTTATTTTATAGAATTCCATGTG
Right flanking sequence: Indices 113858 -- 114357
GTGGCTTAGTGCTTTAATACTTCTTTTTGCTTAGTGCTATTTCTAAACTTCTTAGGGCGCAGGGC
TTTTAGAGTTATTAGGGCGGGTAAGCGACAAACAAAGCTAACTACTTTCCCAGGCTTTACGTAAC
TTTTTGAATTTAAAGAAGAAGCTCACGCTACAGGAGCTGGAACAACTAGAGCTTACTCTGGATCC
GTGCTCGCTACAGGGATTTATCCTCCATTTTGATATTCCAACCTCGCATATTCATCATATTATAT
CTTTTCCTACGATACCGTTTACCTTCTAGTTTTACCTATCTTCTCTTCGGAAAGAGTACCTTGTC
CGAGCAAACCAACACCTTATTCTTAAGGATGCGAGCCAGGAACTACGTACAGAGCTCTACCACCG
GGCATACCAATACACTAAGCTAAGCAGGAACAAAGCAAGCAACTAAGTCAGGTGGGGGTTTACTA
CTAGAGTTAAGCACAATCCTACTTTCCTTAATCAATCGATATTCC
Found at i:115051 original size:31 final size:32
Alignment explanation
Indices: 115013--115076 Score: 85
Period size: 35 Copynumber: 1.9 Consensus size: 32
115003 CAGACAAGAG
115013 GAGCCAGCC-AAGGCATGCTACTTTCTTTTAT
1 GAGCCAGCCGAAGGCATGCTACTTTCTTTTAT
*
115044 GAGCCAGCCATGGAAGGCTTGCTACTTTCTTTT
1 GAGCCAGCC---GAAGGCATGCTACTTTCTTTT
115077 GATCCAGCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 9 0.32
35 19 0.68
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (32 bp):
GAGCCAGCCGAAGGCATGCTACTTTCTTTTAT
Left flanking sequence: Indices 114513 -- 115012
TTCAAGGGCTGTAAATGGACTTGAATCTGCTGATTTAGCTGATTCTGCTACTCGAGATGCATCAA
CGCGCCTGTCCGAGGTTGGATCCCTTTCCCAATCTATAAAACTCATTGTATGGTGCCTAAAAGGG
CCTTTAAGGTCGATTAAGGGTTTCAAACGATAAATCTATCGCAAGTGTAAGGACAAGATCCCGAG
TAAGATGGTGTGGGACGCCCTAGCGTTCCCTTTGCGGCGGGTTGAATCATTATGTACCCTGGCGT
TGTATGCCAATGGATGCACCCTTTCCCTTCTTCTTTCTTCTTATCTTACTACCATCCCTATTATA
CCTACTGGCATGCCTATTAGTTGCAACTTAGTTACTATACGTTCATACCTTGCTTCTGCTTTTCT
TGCCTCCAACCATGCGGTACAAGCGAAGGACAGAGTTCGTTCATCCAGTCTTCTCATTTAAGTGC
AGGAAGAGTATAAATCGTGATAAGTCCCTTTCTCTCAGACAAGAG
Right flanking sequence: Indices 115077 -- 115576
GATCCAGCCCATCCTTATCCAGTCTCTGTTCCGATATCTGGCTGGAATTGATTGCCTGCAAGCAT
CTAAGCTAGTTCTGATATAGACCAATAGCTACACTGAATGCTATCACGATACCTAAACTAACACC
TACTCTCCATTTTCTGTCTATATTCTCCATCGGTATTTGTACTTCTGGTTCGTTTTCTGGTGGTA
GGAGCTCTTGGAAGATAGCCATATTGTTAAAACTATTATCATAAAAGGGAAAAGGAGTCTCTCCC
CGGATTGACATCACTATATCTGATATATCTTTAGTTTCCTGCAGTGTGATCTTAGTATACCCTGG
CACAGTAGCACTCTCATTGAGAAAGTAATCCCACGACATATAAAGCAGTTGATCTGGTGGAATAT
CCAGATTGCAAGGTATAAACTTGTACCAAACAGTAGTGTAAAATCCTACTCTGACAAGTGCATAA
ATACTACCATAGACAGTGTTGATTCCTCCATCCATAGATGATATA
Found at i:116411 original size:27 final size:27
Alignment explanation
Indices: 116373--116441 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
116363 AATCACACAT
* *
116373 TACTGATCGAATAGTATTACCAGTGAA
1 TACTGATCGAATACTATTAACAGTGAA
116400 TACTGATCGAATACTATTAACAGTGAA
1 TACTGATCGAATACTATTAACAGTGAA
116427 TACTGATCGAATACT
1 TACTGATCGAATACT
116442 TGAAGGGAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (27 bp):
TACTGATCGAATACTATTAACAGTGAA
Left flanking sequence: Indices 115873 -- 116372
CATATATAACTTACTATGATATGCTAGTTGATCATTTAAAGATTGGAATATATACGGTCCTTTAG
AGAAAATATCATTAGAGAGAATCTCATTTGATCTCTTTCTAATAGACAGAATATTATTATCTAAT
AACTTGTGATATCTACCCATTACTTTCGACAATAATGTTCCATTTCCAGATTCCACTGATCCACT
ACATTCAATATCCGGTACTTGCAATACATTAGCTCTCTTGTGTAATGCAGACTTTTCGAACTTAG
AATACAAATCAAACAGACGGACTAAATCGATTCTCATGATTGCTATACTTAATCAATATTTGAAA
CTTGTTGGGGATTTACTGTTTTATAGTTGATACACCTACCCTGGGGCACAATACTATTCAATAGT
GGTAGAGAGCTATTTGATCCCTAGTATACACTTAGTATGGCTAGAGATTTAAGGCAATCAACTTA
GTAAGCAGATGCCTACTTTCTAAGCTATGTGAGTGAATCACACAT
Right flanking sequence: Indices 116442 -- 116941
TGAAGGGAGTATCGAGTTACAGTGAATACTTCTCTTCTTACGTGTCTGTCAGAGTCTAATTCAGT
CAAACTGACCGTAAGCTACTATACTTCCGCTGTTGTCCTCGAAACCCTCTCTTCCCCGAAGACAG
TCTTTCTAGGGTAGGGTATGAGAATCCTTTTCTTCTTTGCCAATGCTTGTTTCTTTTCCTTTCCT
TCAGTTCTCACTTCAAGCAATATCTGCATTGCCTTTATCCCGAATCTCTTCCTCGGACCACCTTC
ACGTGACAAAGTAGTGCACTCATTGCCTTATAGCCGCCTAATGCCTTTCGAATAAGAATGCCATT
GCCCGAAGAGGTTGAATCAATAGTAAGAAGATACCACCCAGGCACAGAATCCGAAATAACAATCA
GGAATAGGACTAGGAGAATGAAGTCTAATTAACGGAGTAAAGCAGTAATTGGGCTTAGTGCTCCG
ATTGCGCCTTAGGACTAGGACTGATAGGTAAATGCCCCTTACTCA
Found at i:120315 original size:21 final size:21
Alignment explanation
Indices: 120289--120328 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
120279 TATCCCCGAG
120289 CATACTAAGCCTTTTTTTTTT
1 CATACTAAGCCTTTTTTTTTT
*
120310 CATACTAAGTCTTTTTTTT
1 CATACTAAGCCTTTTTTTT
120329 GTGTGTGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.05, T:0.57
Consensus pattern (21 bp):
CATACTAAGCCTTTTTTTTTT
Left flanking sequence: Indices 119789 -- 120288
CATCATTTACTCCCCCTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCTGCATTGCATCAATA
TGGATCAAATAATCCATTGGGTGTACATTCTGAGATGGATAAAATAGCTTCTTACCCTTATTTTT
ATGTAAAGGATCTTGTAGGTCGGGTAGCTTCTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCT
CCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATAT
TGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAG
GTGTAGCCGCAATAGCACCAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTAT
GTGCGTAGTTCAAGTTTTCGACCGATTCACCAAGGAATATTTTGGTTGAAAATCCTCCTTCCCCG
GGTTCCACTAGGATTTATAGGTTTTTTTTGCCGGATATCCCCGAG
Right flanking sequence: Indices 120329 -- 120828
GTGTGTGTGGAATCCGCGGCTGCTGCGACAGGGGGGGACATTGTAATGGCTACTTCGGAGCCATC
TGTCAATCAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTTCCTTCTGTCAAACAGG
CCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCTTCTGACGTAGCTAAGGAAGCAGGC
AAAGCTGACGTAGCTAAGGAAGCAGGCAAAGGCGCGGGCTTCTTCTCGTCTCTTTTTGGATGCCT
CTGTTCTTCACAGAAGTAGGAGTAAACAGAGAGTGATCTATGCCCTGGCTGGGCAGAGCGAGGGA
TAGGGTGCTTTCTTTCTATATGGATAGGTGGGTCTTCCCTTCCTATCTCTCTTTTCTTTTGTTAG
GAAGGTTAGTCATCATGCCCCGAACTAGGTGTTATTGAAAACTAATCCCTGTCTGGGTTAGAGTG
TTTGGGGTAGGAGAATGTATAGTCGAGGAAGACAGTCTTCTGGGG
Found at i:120419 original size:33 final size:33
Alignment explanation
Indices: 120377--120440 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
120367 CATTGTAATG
120377 GCTACTTCGGAGCCATCTGTCAATCAGGCCCCT
1 GCTACTTCGGAGCCATCTGTCAATCAGGCCCCT
*
120410 GCTACTTCGGAGCCGTCTGTCAATCAGGCCC
1 GCTACTTCGGAGCCATCTGTCAATCAGGCCC
120441 TTCCTTCTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.17, C:0.36, G:0.23, T:0.23
Consensus pattern (33 bp):
GCTACTTCGGAGCCATCTGTCAATCAGGCCCCT
Left flanking sequence: Indices 119877 -- 120376
TACATTCTGAGATGGATAAAATAGCTTCTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTCGG
GTAGCTTCTGCTATCTTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGA
CAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTAC
CGATCCATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACCAGTT
TTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACC
GATTCACCAAGGAATATTTTGGTTGAAAATCCTCCTTCCCCGGGTTCCACTAGGATTTATAGGTT
TTTTTTGCCGGATATCCCCGAGCATACTAAGCCTTTTTTTTTTCATACTAAGTCTTTTTTTTGTG
TGTGTGGAATCCGCGGCTGCTGCGACAGGGGGGGACATTGTAATG
Right flanking sequence: Indices 120441 -- 120940
TTCCTTCTGTCAAACAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCTTCTGAC
GTAGCTAAGGAAGCAGGCAAAGCTGACGTAGCTAAGGAAGCAGGCAAAGGCGCGGGCTTCTTCTC
GTCTCTTTTTGGATGCCTCTGTTCTTCACAGAAGTAGGAGTAAACAGAGAGTGATCTATGCCCTG
GCTGGGCAGAGCGAGGGATAGGGTGCTTTCTTTCTATATGGATAGGTGGGTCTTCCCTTCCTATC
TCTCTTTTCTTTTGTTAGGAAGGTTAGTCATCATGCCCCGAACTAGGTGTTATTGAAAACTAATC
CCTGTCTGGGTTAGAGTGTTTGGGGTAGGAGAATGTATAGTCGAGGAAGACAGTCTTCTGGGGGA
AGACTGGGTTTCTCGGTGTGAGGAGCTACGGTCCGGTGGTTGACAAGCCACATAGAGCTGTCGAC
TATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCA
Found at i:120474 original size:54 final size:54
Alignment explanation
Indices: 120392--120503 Score: 206
Period size: 54 Copynumber: 2.1 Consensus size: 54
120382 TTCGGAGCCA
* *
120392 TCTGTCAATCAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTTCCT
1 TCTGTCAAACAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCT
120446 TCTGTCAAACAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCT
1 TCTGTCAAACAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCT
120500 TCTG
1 TCTG
120504 ACGTAGCTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.16, C:0.37, G:0.21, T:0.27
Consensus pattern (54 bp):
TCTGTCAAACAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCT
Left flanking sequence: Indices 119892 -- 120391
ATAAAATAGCTTCTTACCCTTATTTTTATGTAAAGGATCTTGTAGGTCGGGTAGCTTCTGCTATC
TTTTTTTCCATTTGGATTTTTTTTGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGC
TAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTC
TTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACCAGTTTTTATATCTCTCTTG
GCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTTTCGACCGATTCACCAAGGAAT
ATTTTGGTTGAAAATCCTCCTTCCCCGGGTTCCACTAGGATTTATAGGTTTTTTTTGCCGGATAT
CCCCGAGCATACTAAGCCTTTTTTTTTTCATACTAAGTCTTTTTTTTGTGTGTGTGGAATCCGCG
GCTGCTGCGACAGGGGGGGACATTGTAATGGCTACTTCGGAGCCA
Right flanking sequence: Indices 120504 -- 121003
ACGTAGCTAAGGAAGCAGGCAAAGCTGACGTAGCTAAGGAAGCAGGCAAAGGCGCGGGCTTCTTC
TCGTCTCTTTTTGGATGCCTCTGTTCTTCACAGAAGTAGGAGTAAACAGAGAGTGATCTATGCCC
TGGCTGGGCAGAGCGAGGGATAGGGTGCTTTCTTTCTATATGGATAGGTGGGTCTTCCCTTCCTA
TCTCTCTTTTCTTTTGTTAGGAAGGTTAGTCATCATGCCCCGAACTAGGTGTTATTGAAAACTAA
TCCCTGTCTGGGTTAGAGTGTTTGGGGTAGGAGAATGTATAGTCGAGGAAGACAGTCTTCTGGGG
GAAGACTGGGTTTCTCGGTGTGAGGAGCTACGGTCCGGTGGTTGACAAGCCACATAGAGCTGTCG
ACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCAAGGCTCGACTTTCTCTTC
TTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTA
Found at i:120539 original size:27 final size:27
Alignment explanation
Indices: 120501--120554 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
120491 GCCCTACCTT
120501 CTGACGTAGCTAAGGAAGCAGGCAAAG
1 CTGACGTAGCTAAGGAAGCAGGCAAAG
120528 CTGACGTAGCTAAGGAAGCAGGCAAAG
1 CTGACGTAGCTAAGGAAGCAGGCAAAG
120555 GCGCGGGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.19, G:0.33, T:0.11
Consensus pattern (27 bp):
CTGACGTAGCTAAGGAAGCAGGCAAAG
Left flanking sequence: Indices 120001 -- 120500
TCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATT
TCCTACCGATCCATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCA
CCAGTTTTTATATCTCTCTTGGCTTTACCTTTTTTTAAAGAAATGTATGTGCGTAGTTCAAGTTT
TCGACCGATTCACCAAGGAATATTTTGGTTGAAAATCCTCCTTCCCCGGGTTCCACTAGGATTTA
TAGGTTTTTTTTGCCGGATATCCCCGAGCATACTAAGCCTTTTTTTTTTCATACTAAGTCTTTTT
TTTGTGTGTGTGGAATCCGCGGCTGCTGCGACAGGGGGGGACATTGTAATGGCTACTTCGGAGCC
ATCTGTCAATCAGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTTCCTTCTGTCAAAC
AGGCCCCTGCTACTTCGGAGCCGTCTGTCAATCAGGCCCTACCTT
Right flanking sequence: Indices 120555 -- 121054
GCGCGGGCTTCTTCTCGTCTCTTTTTGGATGCCTCTGTTCTTCACAGAAGTAGGAGTAAACAGAG
AGTGATCTATGCCCTGGCTGGGCAGAGCGAGGGATAGGGTGCTTTCTTTCTATATGGATAGGTGG
GTCTTCCCTTCCTATCTCTCTTTTCTTTTGTTAGGAAGGTTAGTCATCATGCCCCGAACTAGGTG
TTATTGAAAACTAATCCCTGTCTGGGTTAGAGTGTTTGGGGTAGGAGAATGTATAGTCGAGGAAG
ACAGTCTTCTGGGGGAAGACTGGGTTTCTCGGTGTGAGGAGCTACGGTCCGGTGGTTGACAAGCC
ACATAGAGCTGTCGACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCAAGGC
TCGACTTTCTCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTATACCAT
CAATCACTATCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGA
Found at i:121215 original size:29 final size:29
Alignment explanation
Indices: 121182--121256 Score: 150
Period size: 29 Copynumber: 2.6 Consensus size: 29
121172 CTGGAGTTAT
121182 TTTGCACAATGAATTTACAAGTAGATGAG
1 TTTGCACAATGAATTTACAAGTAGATGAG
121211 TTTGCACAATGAATTTACAAGTAGATGAG
1 TTTGCACAATGAATTTACAAGTAGATGAG
121240 TTTGCACAATGAATTTA
1 TTTGCACAATGAATTTA
121257 GCAGGAGTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (29 bp):
TTTGCACAATGAATTTACAAGTAGATGAG
Left flanking sequence: Indices 120682 -- 121181
TGGGTCTTCCCTTCCTATCTCTCTTTTCTTTTGTTAGGAAGGTTAGTCATCATGCCCCGAACTAG
GTGTTATTGAAAACTAATCCCTGTCTGGGTTAGAGTGTTTGGGGTAGGAGAATGTATAGTCGAGG
AAGACAGTCTTCTGGGGGAAGACTGGGTTTCTCGGTGTGAGGAGCTACGGTCCGGTGGTTGACAA
GCCACATAGAGCTGTCGACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCAA
GGCTCGACTTTCTCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTATAC
CATCAATCACTATCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGAGAACTACGCTCATATAC
GTCAATTCATTGGAATCACGGTATCAGTAGAAGTTGTTAAGCACTCACTGGTTGATGTGATCAGT
CATGGAATATAATAGGTAACAGAGGTAATGGTATCCTGGAGTTAT
Right flanking sequence: Indices 121257 -- 121756
GCAGGAGTTTTATTATATCATTAATTTAGGAGGTATTTAGAACCAGCATTTCATCGCCTATCTCT
CACATTATCTATTAAGATAAAAATAAATAGGTAGCAAAGATCACTGGTCTAGTTAACCCAGAGGA
GGAATATACAATAGGTTAACCACAAGGAGGAATATACAATAGGTAGGCTAGGTTTGCTCTTATAA
TATACAATAGATTATAATATAGAATAGGTAGGGGCTTGGGTTGGCTTGGCTTGCTCTTATCCTGT
CCTGATAAGAGAGGGAGGTAAGCGCATTCATTTAGTTGAGTTTTCCTCCACTCCACCTTGGAACT
CATGCACGGAATGGGGAAATAAGAAGATAAGTAAGCATGCATTGTCCTGTCTTTCCCCTACCTTG
GATCCACTCTAAGGCCTAATGCCCTAAGGTAGTCAGAAGGTTGGAGTTCGAGATACGTGTTCTTG
CCCATAAGGGTAAGGTTACGTAGAGCGAACGAGGTTGGTCAATAG
Found at i:121414 original size:28 final size:28
Alignment explanation
Indices: 121373--121430 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
121363 CACTGGTCTA
121373 GTTAACCCAGAGGAGGAATATACAATAG
1 GTTAACCCAGAGGAGGAATATACAATAG
121401 GTTAACCACA-AGGAGGAATATACAATAG
1 GTTAACC-CAGAGGAGGAATATACAATAG
121429 GT
1 GT
121431 AGGCTAGGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (28 bp):
GTTAACCCAGAGGAGGAATATACAATAG
Left flanking sequence: Indices 120873 -- 121372
ACAAGCCACATAGAGCTGTCGACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAA
TCAAGGCTCGACTTTCTCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCT
ATACCATCAATCACTATCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGAGAACTACGCTCAT
ATACGTCAATTCATTGGAATCACGGTATCAGTAGAAGTTGTTAAGCACTCACTGGTTGATGTGAT
CAGTCATGGAATATAATAGGTAACAGAGGTAATGGTATCCTGGAGTTATTTTGCACAATGAATTT
ACAAGTAGATGAGTTTGCACAATGAATTTACAAGTAGATGAGTTTGCACAATGAATTTAGCAGGA
GTTTTATTATATCATTAATTTAGGAGGTATTTAGAACCAGCATTTCATCGCCTATCTCTCACATT
ATCTATTAAGATAAAAATAAATAGGTAGCAAAGATCACTGGTCTA
Right flanking sequence: Indices 121431 -- 121930
AGGCTAGGTTTGCTCTTATAATATACAATAGATTATAATATAGAATAGGTAGGGGCTTGGGTTGG
CTTGGCTTGCTCTTATCCTGTCCTGATAAGAGAGGGAGGTAAGCGCATTCATTTAGTTGAGTTTT
CCTCCACTCCACCTTGGAACTCATGCACGGAATGGGGAAATAAGAAGATAAGTAAGCATGCATTG
TCCTGTCTTTCCCCTACCTTGGATCCACTCTAAGGCCTAATGCCCTAAGGTAGTCAGAAGGTTGG
AGTTCGAGATACGTGTTCTTGCCCATAAGGGTAAGGTTACGTAGAGCGAACGAGGTTGGTCAATA
GGAAACCTGGGTTCCGTTAGCCTCAATCGAAACATAGAGTTCAATCCCAGTGAGAAGGTTCAAGC
TTTGCTTCTGCTTGTTTTAGCTTATACCCCTGATCCGTATATCTGCCTTGGCCCCGCTTTGCATT
CATAAATGTCACTATTCGTCGAGTGCTTCCTTACCTGTTTATCAC
Found at i:121468 original size:17 final size:17
Alignment explanation
Indices: 121446--121478 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
121436 AGGTTTGCTC
121446 TTATAATATACAATAGA
1 TTATAATATACAATAGA
*
121463 TTATAATATAGAATAG
1 TTATAATATACAATAG
121479 GTAGGGGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (17 bp):
TTATAATATACAATAGA
Left flanking sequence: Indices 120946 -- 121445
CGACTTTCTCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTATACCATC
AATCACTATCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGAGAACTACGCTCATATACGTCA
ATTCATTGGAATCACGGTATCAGTAGAAGTTGTTAAGCACTCACTGGTTGATGTGATCAGTCATG
GAATATAATAGGTAACAGAGGTAATGGTATCCTGGAGTTATTTTGCACAATGAATTTACAAGTAG
ATGAGTTTGCACAATGAATTTACAAGTAGATGAGTTTGCACAATGAATTTAGCAGGAGTTTTATT
ATATCATTAATTTAGGAGGTATTTAGAACCAGCATTTCATCGCCTATCTCTCACATTATCTATTA
AGATAAAAATAAATAGGTAGCAAAGATCACTGGTCTAGTTAACCCAGAGGAGGAATATACAATAG
GTTAACCACAAGGAGGAATATACAATAGGTAGGCTAGGTTTGCTC
Right flanking sequence: Indices 121479 -- 121978
GTAGGGGCTTGGGTTGGCTTGGCTTGCTCTTATCCTGTCCTGATAAGAGAGGGAGGTAAGCGCAT
TCATTTAGTTGAGTTTTCCTCCACTCCACCTTGGAACTCATGCACGGAATGGGGAAATAAGAAGA
TAAGTAAGCATGCATTGTCCTGTCTTTCCCCTACCTTGGATCCACTCTAAGGCCTAATGCCCTAA
GGTAGTCAGAAGGTTGGAGTTCGAGATACGTGTTCTTGCCCATAAGGGTAAGGTTACGTAGAGCG
AACGAGGTTGGTCAATAGGAAACCTGGGTTCCGTTAGCCTCAATCGAAACATAGAGTTCAATCCC
AGTGAGAAGGTTCAAGCTTTGCTTCTGCTTGTTTTAGCTTATACCCCTGATCCGTATATCTGCCT
TGGCCCCGCTTTGCATTCATAAATGTCACTATTCGTCGAGTGCTTCCTTACCTGTTTATCACCAG
CTCCCATTGCCAACTCTAAATTACATTCATTTCACTAGTCCGCCA
Found at i:124832 original size:32 final size:33
Alignment explanation
Indices: 124791--124858 Score: 129
Period size: 32 Copynumber: 2.1 Consensus size: 33
124781 GGCCAAACCT
124791 AATAGTGGATTAGCAGCTAAAGCTAACAAGA-A
1 AATAGTGGATTAGCAGCTAAAGCTAACAAGAGA
124823 AATAGTGGATTAGCAGCTAAAGCTAACAAGAGA
1 AATAGTGGATTAGCAGCTAAAGCTAACAAGAGA
124856 AAT
1 AAT
124859 GAAATAAGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (33 bp):
AATAGTGGATTAGCAGCTAAAGCTAACAAGAGA
Left flanking sequence: Indices 124291 -- 124790
AGTAGGAAACCACAGCTATCTTATGTAGTACTTCCTGCCGAAAGGAGGGAATCACCTATTGTAAC
TACTGATTTACGAATTGAGGAATGTATGAAAACAAAAAAATTACCTGCTTATTCAACCAATATGG
CTTTTATACTTAGGAGTAATTAGGCGAGTAAGTTCATAGCCTAGTGGGAAACGCTAAAGTAAGGA
GTATTCGTCAGTTGAGAAGTGACATTGGAACGTGCTTATGTGACTTCAGTAAGGAAAGAAATGAA
AGGGTGTGTGTGATTGATTCCCAAAAGTAGTAGTTATGAGCTCAGCTCTTTCCTTTCACATGGGC
ATTAGCTTTTCTTCAAAAGCAAGCAAGGAATAGTTGGGACAACGAATATTCTAGTTTCCTACCAA
GGCAAGGTACTCAAATAGAAAGGGAGGATCCGCAGAAGCTAGGATCATCATACGCCGCTTGGCAG
GCTGCCCTCCGTCAATTCAATCAAAGCAAGGGCTGGGCCAAACCT
Right flanking sequence: Indices 124859 -- 125358
GAAATAAGGGAAAAAGTCGGCCCTGCAATAAGAGTAGAGTAGTCCGCTCTTCCCGTCACTAGCGA
GGTAGGAAAGCAAGGATTTTAAGAACAGGTAGGAAAGGAAAGCTGGCACTCTCTAGGTTGTTTCG
CGACTAGGTGGGTGGGTAGCTTTAACCCGAATTTAAATAAGATTGGATTTTAGTTTTGAATAAAT
TCTTCAATCCCCGAAGGGCGAGCTCGGATCCAGAGATGGAAGCAGTTATGAAATGAAAACAAGGA
GAAGAAGAAAACAAGAAGACAAGAAAAGAATAAGATAGGCGAGGGGTGGTTTGAGTTGAGTGCGG
TTCTTTCTTTTCTCCTTAAGCTGCTCTCTCCTTTTATCAACTTATGAAAAAACTGCCTATTGATC
TTCCGTCGCTCGCTATGGATGGTTGCAGTTGCCAAAAGGCTACCTTTTCGCACAACACTTAAATG
AGTCACTGACTGGTTTTTTACGTACGTAATACTTAACCTTACAAT
Found at i:182931 original size:14 final size:14
Alignment explanation
Indices: 182912--182939 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
182902 CTATTACTTA
182912 CTATTTCATCTAAG
1 CTATTTCATCTAAG
182926 CTATTTCATCTAAG
1 CTATTTCATCTAAG
182940 TGGAAGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
CTATTTCATCTAAG
Left flanking sequence: Indices 182412 -- 182911
TCTTAGTCGTAGAATATTATTCTCGTCAGACTTGAACCTAACGAAAATAAGAAAGGTTCATAAAA
TTATTTCCCCTTTTCGCGGAAGGGCCTTAATCCGTATTTTCTCATTCATGTATCACAAATGGATC
TACAGTAGGATTTTTTTTTATTGCCGTACCAAAGTAATTAATTTTTAATAATGAATTTCTATCAA
ATAAAAGTCTTATTGCTGAAATCTATTTGATTTGATACATTGTGGTCGGTGGTGAATTAACAGAA
ACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACGCC
TTGAACCGCTCGGCCATCTCTCCTACATAATCTTATTATTGACCAGAAACTGAGTGAATAGCGAG
TTTTCGTATCCCTGCAAGTACAGGTACAACCACAACCGCTCGGGGGTTCCATGGTTCTAAAGGAA
TAATTCCTTTCCCATTTCCATGGATACGAGCGGGACTATTACTTA
Right flanking sequence: Indices 182940 -- 183439
TGGAAGAATCCTGGATTTATTTTTACTAGGAATTCCGCTAACTCGAAAAGTTTTAGTTTGGTTTT
TCTCCCTCGAGAAAAAGAATGGAAGAATTCTTCTTATTCCATAATAACCCTAGAATTCTGTTTGC
ATAACGTACGCTACGCCATACAATCGAAATAGAAAATAGGGTAATGGGACAATTAATGACTTTGA
AAACGCGAAATAGCTGATGAGAGAAGTTGTTGTTGAGAAATAGGAAAGTGGAATGAAATCCAATC
TGATTCAAATATTGAATATCTCTCCTTGTCCAAGCAGAAGGAAAAGGAGACAATTTGAGCAGAAA
GCCCATATCTATTATCTATTTTTTAGAATCGAATTAGTCTGTTTTTTGCTATTTCGTACTGTATA
ATTCCTTTGTTTATGGGATCCCCGAGGGTTTCCAATCAATAGGGGCGTAGTATAGGTAGTTAGAG
AGTGTTGGCTCCCCTCTAACAGACAGGTTTGAAACTCGTGAAGTC
Found at i:184830 original size:16 final size:16
Alignment explanation
Indices: 184809--184855 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
184799 GTACCCTTTT
*
184809 AATACCATG-CTATTTC
1 AATACC-TGACTATTTA
184825 AATACCTGACTATTTA
1 AATACCTGACTATTTA
*
184841 AATAGCTGACT-TTTA
1 AATACCTGACTATTTA
184856 GGCTTGCACT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (16 bp):
AATACCTGACTATTTA
Left flanking sequence: Indices 184309 -- 184808
TTTTAGAAGACCCTACCTACGATGTAGACCTCAAACTCAAGCCCAGTAGATAGACCTCACGAAGG
ATTTTGCTGCGAGAACGCCTTACCCAAGCGCCAGTGTCCGGTTCCTCGAAAGAAGCAAGAAATCT
TTCATACGCCTATTCAAGAGATACCATCCTTGACGTGTTGTTGGGTGATACGTATAACCGGGTAC
GACTTACAACGTTTGGATACCAGATTCAGAGACATTTCATTACTGTTCTGAATATACAAGGCAAT
GTTTCAAGACTGACATTCAATGGGAAAGACCAACATAGTTAAGTTGGTAATAGGTCATAGGTAAC
CAAATACATAGATAGTACTTCTATATCGTTCGTGCAGAAAAAAGAGTATCCTTAGGGTACTAATT
AGATAAAATATATTATCCCCCATACTTTTAGTAGAAGGTTGCATTTCATATCCGGTGAGACAAGA
AAAGGCCTTCGGTACTATTATAGTATAGAAGTTCGGTACCCTTTT
Right flanking sequence: Indices 184856 -- 185355
GGCTTGCACTATCGATCGAATGACGGACGACTATAAAAATAGAATCAGAGGATTGCTTACCCTTC
TTACTTTCTATCGGTTCTATCTGATCTTGTCTTTCCTACGAGTATACATGCAGCTGGCTTTTTTG
GTAATCTGACCTTTCCTTCCTTCCCGCTAGCAACAAGCAACCGATTTCACTCACAACTCTTATTG
CAGGGATCTCCTACACTACTGGCACTTGGTAGCAAGGCGCTACGCGTACGAAAACCACCCACTAT
CAGAAGATGGATATATAGCGGTACTAGGGCGGAGCCCCCTCCTTAGATTCCCAATCGGCATCATT
GATGAATCACCTATCCAACATCCTTAAACAAAGATTGGCCCCCCCCGAATTGGGGGAAGCCGTAG
GTATTATTGCGGTTCAATCTATTGAAGAGCCTGGCACTCAACTAACATTAAGAACTTATCATACA
GGTGGTGGATTCACAGGGGGTACTGCTGACCTTGTACGACCCCCC
Found at i:194752 original size:23 final size:23
Alignment explanation
Indices: 194726--194773 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
194716 TCATAGTTGT
*
194726 TCTATTCAATCCAATCATTCCTA
1 TCTATTCAATCCAATCAATCCTA
*
194749 TCTATTTAATCCAATCAATCCTA
1 TCTATTCAATCCAATCAATCCTA
194772 TC
1 TC
194774 ATAGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (23 bp):
TCTATTCAATCCAATCAATCCTA
Left flanking sequence: Indices 194226 -- 194725
ATAGAAAAGCACATCAATGGAATTTCTTGAAGAAAATAGATAAAATGAAATGGAATTACAGAACA
AAACAGTGATGATTGAAGGAATTGGACAAAACCAACGATTACTGCGAATGGAAGAAATGAAAGTT
CAGATCGATCTAATCCTCGGCTCCACGAAGCGAAGTATGTTCAAATCCACGGAGGGACTTGAATT
ATTACTTCTATTTACTTGATTTGCTGGGGAAGAAAATCATTAAAATACCACTAAGGCCGGGCAAG
TGCAAGTCCCGATAACGGGAAGAAATGCCTACCGTGCGTAGTACCGATGTACAACCAAGACTAAA
ATTGGACTAGACCTTTTATCTTGGGCTCGTTCCGAGTAAGGATTCTTTTGCCTACCTCGATTCAA
GTTCCGACAAAGACTGGGACGGAGCTACTTCTTCCAAGGATGGATATGCACACCGTACCGACTTG
TGAGACCAACATTCTATTCAATCAACTATTATGTTTCATAGTTGT
Right flanking sequence: Indices 194774 -- 195273
ATAGTATTTGGTTTCATCTTCATTTTTTCAATTTAGTAGAATTTCGTTTATGTCAGGTAGCACAC
CTACCGATAAGCGGAAAGTGATCATTATACCTAAACCCATGGATAGTAACCATTTTCTTTTATGA
GGACTCTCTGTTTCCGGTATAGGACCAAACATTTCATTAAATGGATAATCATTTTGAAAGGCAGA
CAGCACTACTGGAGTAAGATCCTTCGTTTCCACGAAAACTACCTTACTATAATCAGTCACATTTG
CCCTCTCATTGAGAAAGACATGATAATCTTCTGGAAACAGATCAACGGGTAACGCTTCTATACCG
CTAACTGGTATATACCTGAACCATACAACGGTATAAAACCCAAATTTGACAAGAGCATAGAAATT
CCCACATACAAACGATGTTCCATCCTTGGATTGGATTGTCATAAGATTCACTAAACATTGTGTGT
GTATTTAGCGGTCAATGTATAATTTGAAGATTCTGTTAATCTTTG
Found at i:204244 original size:28 final size:31
Alignment explanation
Indices: 204209--204273 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 31
204199 GATGATTAAG
*
204209 ACTTTTCATAA-T-AG-CGGGTGAAGCTAAT
1 ACTTTTCATAAGTAAGACGAGTGAAGCTAAT
204237 ACTTTTCATAAGTAAGAACGAGTGAAGCTAAT
1 ACTTTTCATAAGTAAG-ACGAGTGAAGCTAAT
204269 ACTTT
1 ACTTT
204274 CTTTGCTGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 11 0.34
29 1 0.03
30 2 0.06
32 18 0.56
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTTTTCATAAGTAAGACGAGTGAAGCTAAT
Left flanking sequence: Indices 203709 -- 204208
GTCACTAAGTAGTGCTATTCTGTCCGACGGCGGACTCCATCAATCTGAGGTTCTTTCTCTCACGT
AATTTCGCCCGCCCGTTCTACTTCCGTGCCGGAGGAAATGGGATTCGAACCCATGATACAATCTT
CTTGTATGTCGATTTAGCAAACCAATGCCTTAAGCCACTCAGCCATACCTCCAAGTTGTTGATCG
GAATTGGATGTGCCGGGTTGGTTGCCCGAAGATCCACTGCGTAAGCCGTAGCGCGCGTACTCTTC
TTTACTGAGCGAGAAAGACTCTATCCAGATCTATGGATCTCCCCTGCGTCCAAGCGAGACCCCAT
CCACATAACCCCTTATTTTCTCTCCAATGGTAGATTCGAACCCCAAATCATAGAAACTACACTAT
ATATGAGTTTCTGTCCCGCGTTTCAATGGGACTCCCTGGCAGTACGGTGCTGAATTCTCTGGCTT
TTCTAGCACGCACGGCCTTTTTCATATAGCACCAGGATGATTAAG
Right flanking sequence: Indices 204274 -- 204773
CTTTGCTGTGCTATCTCAAGAGTTTAGCTTTGAGAGTTGGAAAGGAAATAGGGCGGTGGGTAAGG
CCTATTTCAGAATTTTGTTGGTGGGTGGTACTATACGGGTGACTGAGGTCCATCAAAACTGTAGG
TGCATTCGTCTAAAGGGCAGACCCTTGAATTCACTCTGCCTGCTTTCGGCAACTGCATTCAACTT
TACCTGTCTGTGGGGCTTTGACTATGGTGGCTCCTCCTTTGACTCTAACCTCTGCCTACCTATAG
TTTCACTCCAGTCGCTTCTTCCTTTTTACTTATTTGAAAGTGGGCGGCGAAAGGAGTAAGTATCC
TATTTTTGGAATGGAATTTCAGTAAAGTCTTTTTTTCTGCTTTATCCTTCTCTCAATCAAAGAAA
GGGAATGCAGATGTTCTGTCGCCCTCTCTTCGTATGCCACCAGCCTTCCTATCAAAAAAAGATTC
ATTCCTTTCGCCGCCCACTTTCTTGCGGCTAGCGAGATTGGCTCA
Found at i:269849 original size:25 final size:25
Alignment explanation
Indices: 269815--269862 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
269805 GTCTTACTTT
269815 AATATGAATGGTATATAGAATAATA
1 AATATGAATGGTATATAGAATAATA
*
269840 AATATGAATGGTATATATAATAA
1 AATATGAATGGTATATAGAATAA
269863 AGAAAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (25 bp):
AATATGAATGGTATATAGAATAATA
Left flanking sequence: Indices 269315 -- 269814
GGCTTACGGAAAAAGGCGAATCCAAGGGCTCTTTACTATGATATAATATCATAGGGACGGACACT
TCCTTTAAGAAAGCCGTACTCTCATCAGCTTTCAAGTAGATAAAGAAGTTAAGGCTAGTGACATC
AGCTATCGGCTATTGGCCTTTGTGAAAGCTTCTCTTCAATATGTTTTATCCTTTTCCAAGCCTTC
TTCGTCAATGATTATGGGTCGTTCCTGTCCTGTAGTTCAAGACACTATTCTAAGGCCAGTTGCCT
ATACAGGATCTAAAGTTTCTAGTACAGTCAGCTTTGGTTATCGCTACACCCTCTCTAGACAAACG
ATTTGATTCAAGCCACTCTACTACTGGTACAGTAGCACCCTGCCTTAATAATCGCATAGGCACCC
GGGAACCTTACTCAGTAAAGAAGGAGACTCCCTAAACAAGACTGCTAGCTGGTATGGAGGGACTA
GCTTTGCTTGCTTCCTAGTCAAATATGCCCTATCCGTCTTACTTT
Right flanking sequence: Indices 269863 -- 270362
AGAAAAAAATAAACTTCCTGCAGATTGCTCAAACCACGTAACCTAATCAATGCGCCTATTCTCCT
AAATCAAGACAAAAGGGATTCCACGGCTCAAAGGACTTTTAAGCCCAAAAGGGACCTCGCTCGAT
CATAAAAGAAAAGTCCATTTTCAATCAACTGATGAATGCCGTCAATCCACTTTCAATCAATCGAC
GACTGCTCTTCTTCTATTCTGAATGTCTTAAATAAGGTGTACCATTCAGAAAAAGTAAGGTTACA
GGGCGCTCTGAGGAGGAGATTTGTAAAAAGGATTTCCAATTAATTAGTAGGACCTTATTAAATAA
CTTAGCTCGAAGGTCCAAAGTCAGATGCTTAACCCATGCCATCCCTTTCAACCTTAGAAAGTGTT
ATCCTAGAATCTATCATTCTCCAAAATTCCCTAAAGGCCCCCCGGGCTTGACAAGTTCAGCAAAA
CCGTAGAGAAAGCGGGCTACACCTAGCTTAGCCTATCCAATATCC
Found at i:269857 original size:13 final size:13
Alignment explanation
Indices: 269816--269857 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
269806 TCTTACTTTA
269816 ATATGAATGGTAT
1 ATATGAATGGTAT
** *
269829 ATA-GAATAATAA
1 ATATGAATGGTAT
269841 ATATGAATGGTAT
1 ATATGAATGGTAT
269854 ATAT
1 ATAT
269858 AATAAAGAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.36
Consensus pattern (13 bp):
ATATGAATGGTAT
Left flanking sequence: Indices 269316 -- 269815
GCTTACGGAAAAAGGCGAATCCAAGGGCTCTTTACTATGATATAATATCATAGGGACGGACACTT
CCTTTAAGAAAGCCGTACTCTCATCAGCTTTCAAGTAGATAAAGAAGTTAAGGCTAGTGACATCA
GCTATCGGCTATTGGCCTTTGTGAAAGCTTCTCTTCAATATGTTTTATCCTTTTCCAAGCCTTCT
TCGTCAATGATTATGGGTCGTTCCTGTCCTGTAGTTCAAGACACTATTCTAAGGCCAGTTGCCTA
TACAGGATCTAAAGTTTCTAGTACAGTCAGCTTTGGTTATCGCTACACCCTCTCTAGACAAACGA
TTTGATTCAAGCCACTCTACTACTGGTACAGTAGCACCCTGCCTTAATAATCGCATAGGCACCCG
GGAACCTTACTCAGTAAAGAAGGAGACTCCCTAAACAAGACTGCTAGCTGGTATGGAGGGACTAG
CTTTGCTTGCTTCCTAGTCAAATATGCCCTATCCGTCTTACTTTA
Right flanking sequence: Indices 269858 -- 270357
AATAAAGAAAAAAATAAACTTCCTGCAGATTGCTCAAACCACGTAACCTAATCAATGCGCCTATT
CTCCTAAATCAAGACAAAAGGGATTCCACGGCTCAAAGGACTTTTAAGCCCAAAAGGGACCTCGC
TCGATCATAAAAGAAAAGTCCATTTTCAATCAACTGATGAATGCCGTCAATCCACTTTCAATCAA
TCGACGACTGCTCTTCTTCTATTCTGAATGTCTTAAATAAGGTGTACCATTCAGAAAAAGTAAGG
TTACAGGGCGCTCTGAGGAGGAGATTTGTAAAAAGGATTTCCAATTAATTAGTAGGACCTTATTA
AATAACTTAGCTCGAAGGTCCAAAGTCAGATGCTTAACCCATGCCATCCCTTTCAACCTTAGAAA
GTGTTATCCTAGAATCTATCATTCTCCAAAATTCCCTAAAGGCCCCCCGGGCTTGACAAGTTCAG
CAAAACCGTAGAGAAAGCGGGCTACACCTAGCTTAGCCTATCCAA
Found at i:285472 original size:19 final size:19
Alignment explanation
Indices: 285436--285475 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
285426 GGGTTTGAGC
**
285436 TTCTTTGGCAACTTAGCTA
1 TTCTTTGGCAACAGAGCTA
285455 TTCTTTGGCAACAGAGCTA
1 TTCTTTGGCAACAGAGCTA
285474 TT
1 TT
285476 GCAATAGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (19 bp):
TTCTTTGGCAACAGAGCTA
Left flanking sequence: Indices 284936 -- 285435
ATAGCTTGTGCGTTGGCCCAAAGAAGCCCTGGGTAAAGCTCGATTAGTACATAAAAAAAGGACCC
TCCCCGGGGCGGAGGAAACGGCAACCCTACTGCATTGGAACATCGTCTCCTCACCATCTCCCTCC
CCATCGTCTCCTTCTTCACTTCCCCGGAACTGCACATCAGGATTCTTCAATCCTTCTATCTGGCC
TCCGTACCCGTAGTGGAGTACCTTGCTACTTTCAATATTCAAGTCATTTTCATTGTTTGTTTTTA
GTTTTGTTGTGGAGAAAGAGGGCTACTTAGGAAGCAAGGTAACTCTATCACCTTCCGTCCGTCTT
TTCTTGAACATTTGACTTCGCGAATCCTAGCTTTTATAAGGGAAAACCAACATCACGTAAGATGA
GGCCTATCCTTCCCGAAAGCGTCGGCTAGTTCTATTCTATTCTAACTTGACTGACTTCCTCTAAA
AGAAGAGTTAACACGGTCGAAGGTCAAAGCAGAAAGGGTTTGAGC
Right flanking sequence: Indices 285476 -- 285975
GCAATAGAGAAATCGAGGGAAATAGGCTTAACCTACAGAGAAAGAGTGTAAGGAAAGAATGCAGA
AAAAGATAGAAAAAGTGAGTGAAACAAATGAAATCAGAGTAAGAAATCTCACAAATAGTAGGTTT
TACCGGACTAGAACAAACGAATTAGCTTGTTTTAACTAAAAAGCACAGTTGAGCAGGAACGAAGT
GTGAACATAGGCACAAAAACAACGTTTTGGTGATCCTGTGTAGTTGCTTGCTTTCCGCTTGAGCT
ACTTTCACTGTGAAGAAGAGGACTTCATCTCTTCACTTACCCAAGGAACTTGGAAATAACGCGTC
TGGCTTGGAAAGCTAGTTAGGGATATTCGATAGAGGAAGGACCCGTTTCGAGTAGTGAACGCACC
AAGAAAAGCCTTTTATTTTAAGCCATGCTTGGTAACGCACATGTCCTACTCTACCTGCATCGGGA
CTGGTGAGAGCCGGCGATGCACGGAATTTTGGAAACGCTCTACTT
Found at i:286761 original size:16 final size:16
Alignment explanation
Indices: 286736--286768 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
286726 ACTGATGGAC
286736 TGACTGAAGTGGCTAT
1 TGACTGAAGTGGCTAT
*
286752 TGACTTAAGTGGCTAT
1 TGACTGAAGTGGCTAT
286768 T
1 T
286769 TCCTGATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.36
Consensus pattern (16 bp):
TGACTGAAGTGGCTAT
Left flanking sequence: Indices 286236 -- 286735
CTAAGGGCGGAAGAGGAAAGTACCAAGGTGCACTAGGTGAGAAGAACTTTTTTCGCTTTTTTATC
GGAATTTGACTCATTTTAGTATAGAAAAACACCATTCTATCCGACCTAGTAGGAAAAGTTACTAT
TTTGCATTCCTTAGGGAAAGTGGCATTTTCAAGGGTCATTTTTGAAAAGCATTTGTCCCAACCAT
GTGCAAAAGTAAAGAAAATTGCTTCTCCCTCGTAAATGGCTCCAAAATCTGCTCCATTTTTGAAA
ACTTGATAGCCAGCATGGGGCAATTTGGTAGTTTTTTCATTTTGCTTGTAAATCGGCTCTTTTTG
GCATCCCAGTTCTGAACTTTTTCATCTCGCCTAGTGGAACTTGAGACTTTTTCCAGTATCTTTAT
CCAGCAGCAGGACTTTCACTACTTTCCCAAGTAAAGCTAGTGTTAAGAGACTGGATTGTAGAAGT
GTTGACTGACTTGACTGGAAATATAATATGGAAAGACTGATGGAC
Right flanking sequence: Indices 286769 -- 287268
TCCTGATTCCGATATGGCGTCCTGAATCCGATATTGCTTGATTGTCTGTTGATGCCCAGCCGAAG
AAGTGACTTGCTTAACGCAGCAATTTCTGTTTTCTTGTGCTCTCCACCTCCGCTTGACACTCTCG
TAGTAGATCATAAGAGAAGTATTCTTTCAAGAAATTCGTATAGAAAGATGGACTAGCTCGAGAAC
AAGCAACGGATTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTCCTTGG
CTTCAAACAATCGATTGAATCTGGATTCCTTTGCTTATCCTTCCTGGCTATAGTCTCTCTTGTGC
CTTCGGCAGTTCAGTTAAAGATTTCTGTATCAGCAGTTTGTTTCCCCATTTGCTCAAAGAACGCA
TAAAACCTGTTCCCTCACCGTATCAAAAGATCAAGCGGAAGAGTCCTCTTCTTCAAGAAGAGTTT
TTCATTTCACTCTTCCGCAGCAATGCCCGGGCAAGAAAACAATAT
Found at i:303396 original size:15 final size:15
Alignment explanation
Indices: 303376--303412 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
303366 ATTCCATGTG
303376 CGTTCTTAGGGTCAA
1 CGTTCTTAGGGTCAA
303391 CGTTCTTTAGGGTCAA
1 CGTTC-TTAGGGTCAA
303407 -GTTCTT
1 CGTTCTT
303413 GTGGCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 9 0.43
16 10 0.48
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (15 bp):
CGTTCTTAGGGTCAA
Left flanking sequence: Indices 302876 -- 303375
TACTGATAAATCTTCTACTGATTAGTGTGCCCATGCGGGATGAACCAACCCTCAAATACTATACT
ATAAACTGGACCTTACCAAAGAAAGTATGAAAGAAGATCTTCTACTGATAGCGAAGATAGAAAAT
ACCCACTTTAACGAGTTTTTACAACTATTGTGGCAGACGACACATCCTTAACCTGAAACAGGCCT
TTCATTGCGTTTCAGGAGCCGTACAATACAATACAATAGTAAATCATCTGCTGTAACTTCAATCA
GTGAAGTCTCATATCAATGTTTCCTTGCCGTAGTGCATTCTCGATGCGCCACCCAATCCAATCTA
ATTTATATGATGGGTTCCAGGCTCCCCTCCTACGCCAATACATAGACCCTGCCTCTACTTAGAAA
AAGTACTAATCGTGGACCCTCCTTACGACCCTACAGCAACTCCTATAGCCCTCGCACCACCTGAC
GCTCTAACCCTTGAAATTCTATCTTATTTTATAGAATTCCATGTG
Right flanking sequence: Indices 303413 -- 303912
GTGGCTTAGTGCTTTAATACTTCTTTTTGCTTAGTGCTATTTCTAAACTTCTTAGGGCGCAGGGC
TTTTAGAGTTATTAGGGCGGGTAAGCGACAAACAAAGCTAACTACTTTCCCAGGCTTTACGTAAC
TTTTTGAATTTAAAGAAGAAGCTCACGCTACAGGAGCTGGAACAACTAGAGCTTACTCTGGATCC
GTGCTCGCTACAGGGATTTATCCTCCATTTTGATATTCCAACCTCGCATATTCATCATATTATAT
CTTTTCCTACGATACCGTTTACCTTCTAGTTTTACCTATCTTCTCTTCGGAAAGAGTACCTTGTC
CGAGCAAACCAACACCTTATTCTTAAGGATGCGAGCCAGGAACTACGTACAGAGCTCTACCACCG
GGCATACCAATACACTAAGCTAAGCAGGAACAAAGCAAGCAACTAAGTCAGGTGGGGGTTTACTA
CTAGAGTTAAGCACAATCCTACTTTCCTTAATCAATCGATATTCC
Found at i:303402 original size:16 final size:16
Alignment explanation
Indices: 303376--303412 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
303366 ATTCCATGTG
303376 CGTTC-TTAGGGTCAA
1 CGTTCTTTAGGGTCAA
303391 CGTTCTTTAGGGTCAA
1 CGTTCTTTAGGGTCAA
303407 -GTTCTT
1 CGTTCTT
303413 GTGGCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (16 bp):
CGTTCTTTAGGGTCAA
Left flanking sequence: Indices 302876 -- 303375
TACTGATAAATCTTCTACTGATTAGTGTGCCCATGCGGGATGAACCAACCCTCAAATACTATACT
ATAAACTGGACCTTACCAAAGAAAGTATGAAAGAAGATCTTCTACTGATAGCGAAGATAGAAAAT
ACCCACTTTAACGAGTTTTTACAACTATTGTGGCAGACGACACATCCTTAACCTGAAACAGGCCT
TTCATTGCGTTTCAGGAGCCGTACAATACAATACAATAGTAAATCATCTGCTGTAACTTCAATCA
GTGAAGTCTCATATCAATGTTTCCTTGCCGTAGTGCATTCTCGATGCGCCACCCAATCCAATCTA
ATTTATATGATGGGTTCCAGGCTCCCCTCCTACGCCAATACATAGACCCTGCCTCTACTTAGAAA
AAGTACTAATCGTGGACCCTCCTTACGACCCTACAGCAACTCCTATAGCCCTCGCACCACCTGAC
GCTCTAACCCTTGAAATTCTATCTTATTTTATAGAATTCCATGTG
Right flanking sequence: Indices 303413 -- 303912
GTGGCTTAGTGCTTTAATACTTCTTTTTGCTTAGTGCTATTTCTAAACTTCTTAGGGCGCAGGGC
TTTTAGAGTTATTAGGGCGGGTAAGCGACAAACAAAGCTAACTACTTTCCCAGGCTTTACGTAAC
TTTTTGAATTTAAAGAAGAAGCTCACGCTACAGGAGCTGGAACAACTAGAGCTTACTCTGGATCC
GTGCTCGCTACAGGGATTTATCCTCCATTTTGATATTCCAACCTCGCATATTCATCATATTATAT
CTTTTCCTACGATACCGTTTACCTTCTAGTTTTACCTATCTTCTCTTCGGAAAGAGTACCTTGTC
CGAGCAAACCAACACCTTATTCTTAAGGATGCGAGCCAGGAACTACGTACAGAGCTCTACCACCG
GGCATACCAATACACTAAGCTAAGCAGGAACAAAGCAAGCAACTAAGTCAGGTGGGGGTTTACTA
CTAGAGTTAAGCACAATCCTACTTTCCTTAATCAATCGATATTCC
Found at i:304606 original size:31 final size:32
Alignment explanation
Indices: 304568--304631 Score: 85
Period size: 35 Copynumber: 1.9 Consensus size: 32
304558 CAGACAAGAG
304568 GAGCCAGCC-AAGGCATGCTACTTTCTTTTAT
1 GAGCCAGCCGAAGGCATGCTACTTTCTTTTAT
*
304599 GAGCCAGCCATGGAAGGCTTGCTACTTTCTTTT
1 GAGCCAGCC---GAAGGCATGCTACTTTCTTTT
304632 GATCCAGCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 9 0.32
35 19 0.68
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (32 bp):
GAGCCAGCCGAAGGCATGCTACTTTCTTTTAT
Left flanking sequence: Indices 304068 -- 304567
TTCAAGGGCTGTAAATGGACTTGAATCTGCTGATTTAGCTGATTCTGCTACTCGAGATGCATCAA
CGCGCCTGTCCGAGGTTGGATCCCTTTCCCAATCTATAAAACTCATTGTATGGTGCCTAAAAGGG
CCTTTAAGGTCGATTAAGGGTTTCAAACGATAAATCTATCGCAAGTGTAAGGACAAGATCCCGAG
TAAGATGGTGTGGGACGCCCTAGCGTTCCCTTTGCGGCGGGTTGAATCATTATGTACCCTGGCGT
TGTATGCCAATGGATGCACCCTTTCCCTTCTTCTTTCTTCTTATCTTACTACCATCCCTATTATA
CCTACTGGCATGCCTATTAGTTGCAACTTAGTTACTATACGTTCATACCTTGCTTCTGCTTTTCT
TGCCTCCAACCATGCGGTACAAGCGAAGGACAGAGTTCGTTCATCCAGTCTTCTCATTTAAGTGC
AGGAAGAGTATAAATCGTGATAAGTCCCTTTCTCTCAGACAAGAG
Right flanking sequence: Indices 304632 -- 305131
GATCCAGCCCATCCTTATCCAGTCTCTGTTCCGATATCTGGCTGGAATTGATTGCCTGCAAGCAT
CTAAGCTAGTTCTGATATAGACCAATAGCTACACTGAATGCTATCACGATACCTAAACTAACACC
TACTCTCCATTTTCTGTCTATATTCTCCATCGGTATTTGTACTTCTGGTTCGTTTTCTGGTGGTA
GGAGCTCTTGGAAGATAGCCATATTGTTAAAACTATTATCATAAAAGGGAAAAGGAGTCTCTCCC
CGGATTGACATCACTATATCTGATATATCTTTAGTTTCCTGCAGTGTGATCTTAGTATACCCTGG
CACAGTAGCACTCTCATTGAGAAAGTAATCCCACGACATATAAAGCAGTTGATCTGGTGGAATAT
CCAGATTGCAAGGTATAAACTTGTACCAAACAGTAGTGTAAAATCCTACTCTGACAAGTGCATAA
ATACTACCATAGACAGTGTTGATTCCTCCATCCATAGATGATATA
Found at i:305966 original size:27 final size:27
Alignment explanation
Indices: 305928--305996 Score: 120
Period size: 27 Copynumber: 2.6 Consensus size: 27
305918 AATCACACAT
* *
305928 TACTGATCGAATAGTATTACCAGTGAA
1 TACTGATCGAATACTATTAACAGTGAA
305955 TACTGATCGAATACTATTAACAGTGAA
1 TACTGATCGAATACTATTAACAGTGAA
305982 TACTGATCGAATACT
1 TACTGATCGAATACT
305997 TGAAGGGAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (27 bp):
TACTGATCGAATACTATTAACAGTGAA
Left flanking sequence: Indices 305428 -- 305927
CATATATAACTTACTATGATATGCTAGTTGATCATTTAAAGATTGGAATATATACGGTCCTTTAG
AGAAAATATCATTAGAGAGAATCTCATTTGATCTCTTTCTAATAGACAGAATATTATTATCTAAT
AACTTGTGATATCTACCCATTACTTTCGACAATAATGTTCCATTTCCAGATTCCACTGATCCACT
ACATTCAATATCCGGTACTTGCAATACATTAGCTCTCTTGTGTAATGCAGACTTTTCGAACTTAG
AATACAAATCAAACAGACGGACTAAATCGATTCTCATGATTGCTATACTTAATCAATATTTGAAA
CTTGTTGGGGATTTACTGTTTTATAGTTGATACACCTACCCTGGGGCACAATACTATTCAATAGT
GGTAGAGAGCTATTTGATCCCTAGTATACACTTAGTATGGCTAGAGATTTAAGGCAATCAACTTA
GTAAGCAGATGCCTACTTTCTAAGCTATGTGAGTGAATCACACAT
Right flanking sequence: Indices 305997 -- 306496
TGAAGGGAGTATCGAGTTACAGTGAATACTTCTCTTCTTACGTGTCTGTCAGAGTCTAATTCAGT
CAAACTGACCGTAAGCTACTATACTTCCGCTGTTGTCCTCGAAACCCTCTCTTCCCCGAAGACAG
TCTTTCTAGGGTAGGGTATGAGAATCCTTTTCTTCTTTGCCAATGCTTGTTTCTTTTCCTTTCCT
TCAGTTCTCACTTCAAGCAATATCTGCATTGCCTTTATCCCGAATCTCTTCCTCGGACCACCTTC
ACGTGACAAAGTAGTGCACTCATTGCCTTATAGCCGCCTAATGCCTTTCGAATAAGAATGCCATT
GCCCGAAGAGGTTGAATCAATAGTAAGAAGATACCACCCAGGCACAGAATCCGAAATAACAATCA
GGAATAGGACTAGGAGAATGAAGTCTAATTAACGGAGTAAAGCAGTAATTGGGCTTAGTGCTCCG
ATTGCGCCTTAGGACTAGGACTGATAGGTAAATGCCCCTTACTCA
Found at i:319795 original size:19 final size:19
Alignment explanation
Indices: 319767--319814 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
319757 CGGTAACTAG
*
319767 AGATTGAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
*
319786 TGATTCAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
319805 AGATTCAATA
1 AGATTCAATA
319815 TCATAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (19 bp):
AGATTCAATAATAGAAGCC
Left flanking sequence: Indices 319267 -- 319766
GAAATTGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCGAGAAT
TTCATGTGATTTAGTAAACAGAATATAGATTCCATAATTGCTAGATCGATCTGTAGGGATTGATG
AAGAGTGAGCTGATAATGGAATTTTTCTTCGATAAACAGGAAACTTAAGATTAAGATGCTCCGGA
ATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTCGAGGGATTTTGTAGG
TTCATTAATCAAGGCTTGGCAGAAGAACTTGAGAAGTTTCCAACAATTAAAGATCCAGATCACGG
AATGGATACGAAATCTAGAGGCGGCAGGTAAACTAGGGAAACAGAAACTATTGTTTTTGGTGAAT
TATCAGTGTGCAGATGAATTTCATCCACTGCTATTGAAGAAGCTTTTAGAGGGATATCTTGTCTT
GTCGGACTAAGAGCTCTTATCTCTTTCTTTTCCCACGGTAACTAG
Right flanking sequence: Indices 319815 -- 320314
TCATAAGAAAATAGAGATTGTAGCGTAGAGTCAGGCTATCCCATGTTTGCAATAACAGCTTTGGG
ATCTTTCCTGTTAATGATGAATAGCTTGCCTCAACAGAGAATCAGAATTCTTTTTATTCGGTATA
ACAACCTTAAAAACGAATCGATCTAGATGCCCCGCTCTTGCCATCTTTGATGGAATTGAATCATC
AACTGACTTACTTGAGGAATAAAAAAATCTGCAGCTTTCGATTCTTGTCTATCGGATTCTATTGA
GAAGAAGGGACAACCATCCATCCTCCCCGAAACTAGTTTAGTGCCTGAACGAGATTGGTGGCACT
TATGACGAGAAAACAAACTCTTTCTTCTGTTCAAAAGCTAGTAGTGCCGTAGTGCCAATCTACTC
CGAAGAACAAGCTTCTTTGCAAAACTACTTTCTTCTACGGAGCTACCTCCGTCTCACTCTTGTAC
CGAATGCTACCTGGCATAACATCCTTACTTAAATATCTTCCGCTC
Found at i:355244 original size:13 final size:13
Alignment explanation
Indices: 355226--355251 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
355216 AATTGGAACC
355226 ATTAACTATATTA
1 ATTAACTATATTA
355239 ATTAACTATATTA
1 ATTAACTATATTA
355252 TTTGTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTAACTATATTA
Left flanking sequence: Indices 354726 -- 355225
CAAAACAAACCCTAGTTTGAGGAAAGAACTGTGGGTTCTCAAAATCAAGTATCGCCGGGCCTAGT
TATTCTCTTGCCCCAACTTATGCGGGGTACGAATTTTTCGAGTTGGATCAGTACTATAAGCCTAA
GTATTTTATTGATCAGGCGGCACCCAGATTTGAACTGGGGATAAAGGATTTGCAGTCCCCTGCCT
TACCGCTTGGCCATGCCGCCAAATCCGATCTAAAATCGAGAAAAATCTTATTCATCCACATTATT
TTACTAATTATTGTTCGTAGGAGGGGATTACTAAACCCTTTTTTTTTCGTCGAATCCCTTTGTAC
TTATCCCTTTCCAATCCCTTTGAAGAAATTCATTCCGGTTTTTTTATTGGACCCAGTTTTATTCT
CTTCGATTGATTGTATCTCAAAACACACACTGCTTAAATACCTTCTCTTTCTATTGAAAAGAGAA
AGGGTTTCCAGTCACAGACTGAAAAATTTAGGACAAATTGGAACC
Right flanking sequence: Indices 355252 -- 355751
TTTGTTATTTTGATATTTTCTATTTGTTAGTAGTGAACGGTTCTAAAATGGGTATTGTATCCCTT
TTTCCTCGATCGTCAACGAGCAAGAAAACGGATGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTC
AATCCGGTGCTTGTTTGGATGTAAGAGATCTCGTTTGCTGGCCGGGCCCTTCCATGAGTTTAGAT
CTCTATGTATGAATCTCTTATTCAATCCCATACTTTTTCTCATTTCAGAACGATCAGCATACTGT
GTGACTTCTGCGTGACAGTTCTTGCATTTCGTTTGTTGCTTTGCATGAACATTTAGATATTGGAA
AGCCCTTAATTAGGAATTTCATAGATAGAGAAGGACGGGAAAAAAGAGAGAGACTGACTAACTAC
CCGGATCAATGCTGATTGACGACTGAATAAATAGCCGGAAGCAACAACTGCACGAGAGAGAAAGA
GCGGATCCAACTAAGGAAATGCAGTACCTGTTCTGCCGGAGCTAA
Found at i:394530 original size:36 final size:36
Alignment explanation
Indices: 394483--394551 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
394473 CGTCATTCGG
394483 TCACGAAAACAGGGATTCTGGAACGTAAATCTGCGA
1 TCACGAAAACAGGGATTCTGGAACGTAAATCTGCGA
394519 TCACGAAAACAGGGATTCTGGAACGTAAATCTG
1 TCACGAAAACAGGGATTCTGGAACGTAAATCTG
394552 TGCACGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (36 bp):
TCACGAAAACAGGGATTCTGGAACGTAAATCTGCGA
Left flanking sequence: Indices 393983 -- 394482
CGGGCGTCGGGTAGATGCTCACCATTTCAATGTCTATATCTGTGGTTCCAGAAGTGGAATTGCTA
TTCTCGATTCAGACAAGACACTGATTTGTTTACGAACCGCTCTTCATTTTATAGGATCTCCCATT
CGTAAAAAATGCCGTTCCTTCCTTTTAAAGACCAATCATTTATTTCGATGTGAGATATTGGAAAA
AATGGCGAGCTGTATCAATGATTCTCAATGGAAGATCGGGACTTTTTTTAGCAATTATTTGGCTA
AAAAAAAAAAATTCCGTTTAAGAACGAAAAAGATAAATTTTGGGTTGAACCAACAACCCGATTGT
GCGGTTATTCTGAATGCAGATAGAAAGTCTTCGGTCATACTGGAAGCTGCTCGATCACAAATACC
TATTGCATTCTTAGTTGATTCCACGATCCCAGGGGAATCCCATAAAAGAATCACTTATCCCATCC
CAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGG
Right flanking sequence: Indices 394552 -- 395051
TGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCGA
CGAGAACTTATAATCGGGGGCAGAAAAACTTCAATCTGTAGCGCTACTTCCAGAGTTACCAAAAC
TCGAAGTATCTATACTGCGGCTGACAGCGAATTATTTTTAGCTGTCCTGCCTTTCCTTTCGGAAA
TGCCAGAACAGGTAGTTTCAACTGTGGAGCCCTTCCTTTCTACAATCCCGGAACAGGTAGTTCCA
ACCTACATTCCACAAATGCAAAATTTTATAGGTGAAACTACTACCAGTCTACCCCAGCTACAAGG
GGAGGCTGGCCCGAGTAACTCTACAGGGGGTGGGGCTGCCCCTTCTTCTTCAATTTATCTGGCTT
ATGCGGCCGAACACGCATCTTTCCTAAAAGCAATTTCTGAGGAGCTTTACCGGAGAGTAGGGGAA
CAAATCAACTTAAAGAGTCCCCTGGACGAGGAGAATATAAGGAAT
Found at i:428321 original size:16 final size:16
Alignment explanation
Indices: 428300--428332 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
428290 GGAATCAGGA
428300 AATAGCCACTTAAGTC
1 AATAGCCACTTAAGTC
*
428316 AATAGCCACTTCAGTC
1 AATAGCCACTTAAGTC
428332 A
1 A
428333 GTCCATCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (16 bp):
AATAGCCACTTAAGTC
Left flanking sequence: Indices 427800 -- 428299
ATATTGTTTTCTTGCCCGGGCATTGCTGCGGAAGAGTGAAATGAAAAACTCTTCTTGAAGAAGAG
GACTCTTCCGCTTGATCTTTTGATACGGTGAGGGAACAGGTTTTATGCGTTCTTTGAGCAAATGG
GGAAACAAACTGCTGATACAGAAATCTTTAACTGAACTGCCGAAGGCACAAGAGAGACTATAGCC
AGGAAGGATAAGCAAAGGAATCCAGATTCAATCGATTGTTTGAAGCCAAGGAGCAAGAAAACGGA
TGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTCAATCCGTTGCTTGTTCTCGAGCTAGTCCATCT
TTCTATACGAATTTCTTGAAAGAATACTTCTCTTATGATCTACTACGAGAGTGTCAAGCGGAGGT
GGAGAGCACAAGAAAACAGAAATTGCTGCGTTAAGCAAGTCACTTCTTCGGCTGGGCATCAACAG
ACAATCAAGCAATATCGGATTCAGGACGCCATATCGGAATCAGGA
Right flanking sequence: Indices 428333 -- 428832
GTCCATCAGTCTTTCCATATTATATTTCCAGTCAAGTCAGTCAACACTTCTACAATCCAGTCTCT
TAACACTAGCTTTACTTGGGAAAGTAGTGAAAGTCCTGCTGCTGGATAAAGATACTGGAAAAAGT
CTCAAGTTCCACTAGGCGAGATGAAAAAGTTCAGAACTGGGATGCCAAAAAGAGCCGATTTACAA
GCAAAATGAAAAAACTACCAAATTGCCCCATGCTGGCTATCAAGTTTTCAAAAATGGAGCAGATT
TTGGAGCCATTTACGAGGGAGAAGCAATTTTCTTTACTTTTGCACATGGTTGGGACAAATGCTTT
TCAAAAATGACCCTTGAAAATGCCACTTTCCCTAAGGAATGCAAAATAGTAACTTTTCCTACTAG
GTCGGATAGAATGGTGTTTTTCTATACTAAAATGAGTCAAATTCCGATAAAAAAGCGAAAAAAGT
TCTTCTCACCTAGTGCACCTTGGTACTTTCCTCTTCCGCCCTTAG
Found at i:445240 original size:25 final size:25
Alignment explanation
Indices: 445206--445253 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
445196 ATTTTTTTCT
445206 TTATTATATATACCATTCATATTTA
1 TTATTATATATACCATTCATATTTA
*
445231 TTATTCTATATACCATTCATATT
1 TTATTATATATACCATTCATATT
445254 AAAGTAAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (25 bp):
TTATTATATATACCATTCATATTTA
Left flanking sequence: Indices 444706 -- 445205
GGATATTGGATAGGCTAAGCTAGGTGTAGCCCGCTTTCTCTACGGTTTTGCTGAACTTGTCAAGC
CCGGGGGGCCTTTAGGGAATTTTGGAGAATGATAGATTCTAGGATAACACTTTCTAAGGTTGAAA
GGGATGGCATGGGTTAAGCATCTGACTTTGGACCTTCGAGCTAAGTTATTTAATAAGGTCCTACT
AATTAATTGGAAATCCTTTTTACAAATCTCCTCCTCAGAGCGCCCTGTAACCTTACTTTTTCTGA
ATGGTACACCTTATTTAAGACATTCAGAATAGAAGAAGAGCAGTCGTCGATTGATTGAAAGTGGA
TTGACGGCATTCATCAGTTGATTGAAAATGGACTTTTCTTTTATGATCGAGCGAGGTCCCTTTTG
GGCTTAAAAGTCCTTTGAGCCGTGGAATCCCTTTTGTCTTGATTTAGGAGAATAGGCGCATTGAT
TAGGTTACGTGGTTTGAGCAATCTGCAGGAAGTTTATTTTTTTCT
Right flanking sequence: Indices 445254 -- 445753
AAAGTAAGACGGATAGGGCATATTTGACTAGGAAGCAAGCAAAGCTAGTCCCTCCATACCAGCTA
GCAGTCTTGTTTAGGGAGTCTCCTTCTTTACTGAGTAAGGTTCCCGGGTGCCTATGCGATTATTA
AGGCAGGGTGCTACTGTACCAGTAGTAGAGTGGCTTGAATCAAATCGTTTGTCTAGAGAGGGTGT
AGCGATAACCAAAGCTGACTGTACTAGAAACTTTAGATCCTGTATAGGCAACTGGCCTTAGAATA
GTGTCTTGAACTACAGGACAGGAACGACCCATAATCATTGACGAAGAAGGCTTGGAAAAGGATAA
AACATATTGAAGAGAAGCTTTCACAAAGGCCAATAGCCGATAGCTGATGTCACTAGCCTTAACTT
CTTTATCTACTTGAAAGCTGATGAGAGTACGGCTTTCTTAAAGGAAGTGTCCGTCCCTATGATAT
TATATCATAGTAAAGAGCCCTTGGATTCGCCTTTTTCCGTAAGCC
Found at i:453745 original size:11 final size:11
Alignment explanation
Indices: 453729--453756 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
453719 GTCGTCATGG
453729 GAAAGAAATAA
1 GAAAGAAATAA
453740 GAAAGAAATAA
1 GAAAGAAATAA
453751 GAAAGA
1 GAAAGA
453757 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 453229 -- 453728
TGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAG
ATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGACGGGCACTCCAG
GATCCGCCTACGCTCGTGAAAACCCAGGTTGGTCCTCCGACCAGATGTGTGGATAACGAGGCCAC
CTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGTCGCTCA
ACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 453757 -- 454256
GATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGA
ACGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCT
ACATTCGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAA
AGGAACAAGCAACGGATTGAGCGCACTAGCGCGAAAGAACAAGCTGCTTCTTGTTTAGGGTCTTG
ACTCTTGAGTCTGAGAGGGAGAAGGCTTCCCGCGTGGGCGGATTAGCAATCCCTAGTCTTCCATA
ACGCGTATTGGACTTATGTTTCCTCCTCCTCGAAGATGATGGATC
Done.