Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_011033
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 490520
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Warning! 4 characters in sequence are not A, C, G, or T
Found at i:8584 original size:22 final size:23
Alignment explanation
Indices: 8559--8603 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8549 CCCACCTGAG
8559 CATTCTACTT-CCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
*
8581 CATTCTCCTTCCCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
8604 TTACTAGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.36
Consensus pattern (23 bp):
CATTCTACTTCCCCCCTATTGGA
Left flanking sequence: Indices 8059 -- 8558
CTAATTTATTTTTGCACTATGTTGAGATTCTTTTCTTGCCGGTGTGGTAGATAAGAATGCGCCGA
ATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTAC
CTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGTG
AGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTAC
CTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTCC
CTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTAT
AAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTTC
AGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAG
Right flanking sequence: Indices 8604 -- 9103
TTACTAGTCTCGCCCTCTAGTTACATACTATCTTCTTACGTTACATACTATCTTCTTACAGTGGA
TCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGGGCAATG
CCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATCTTATAG
GAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAGTAGAGT
ATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGTATTGTC
ACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTGAGTGGC
TGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCACAGTCA
CCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAG
Found at i:8646 original size:20 final size:20
Alignment explanation
Indices: 8623--8662 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
8613 TCGCCCTCTA
8623 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
8643 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
8663 AGTGGATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (20 bp):
GTTACATACTATCTTCTTAC
Left flanking sequence: Indices 8123 -- 8622
AATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTA
CCTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGT
GAGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTA
CCTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTC
CCTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTA
TAAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTT
CAGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAGCATTCTACTTCCCCCTATT
GGACATTCTCCTTCCCCCCTATTGGATTACTAGTCTCGCCCTCTA
Right flanking sequence: Indices 8663 -- 9162
AGTGGATCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGG
GCAATGCCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATC
TTATAGGAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAG
TAGAGTATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGT
ATTGTCACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTG
AGTGGCTGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCA
CAGTCACCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAGGAATCGAACCTAGT
CATAGTAAAATGATCATTCAAAGTAGACTTTTGTCATAGGGCAAA
Found at i:62592 original size:19 final size:19
Alignment explanation
Indices: 62564--62611 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
62554 CGGTAACTAG
*
62564 AGATTGAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
*
62583 TGATTCAATAATAGAAGCC
1 AGATTCAATAATAGAAGCC
62602 AGATTCAATA
1 AGATTCAATA
62612 TCATAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (19 bp):
AGATTCAATAATAGAAGCC
Left flanking sequence: Indices 62064 -- 62563
GAAATTGTCTCTATTCATATGTATGAAATACATATATGAAATACGTATGTGGAGTTCCCGAGAAT
TTCATGTGATTTAGTAAACAGAATATAGATTCCATAATTGCTAGATCGATCTGTAGGGATTGATG
AAGAGTGAGCTGATAATGGAATTTTTCTTCGATAAACAGGAAACTTAAGATTAAGATGCTCCGGA
ATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTCGAGGGATTTTGTAGG
TTCATTAATCAAGGCTTGGCAGAAGAACTTGAGAAGTTTCCAACAATTAAAGATCCAGATCACGG
AATGGATACGAAATCTAGAGGCGGCAGGTAAACTAGGGAAACAGAAACTATTGTTTTTGGTGAAT
TATCAGTGTGCAGATGAATTTCATCCACTGCTATTGAAGAAGCTTTTAGAGGGATATCTTGTCTT
GTCGGACTAAGAGCTCTTATCTCTTTCTTTTCCCACGGTAACTAG
Right flanking sequence: Indices 62612 -- 63111
TCATAAGAAAATAGAGATTGTAGCGTAGAGTCAGGCTATCCCATGTGTGCAATAACAGCTTTGGG
ATCTTTCCTGTTAATGATGAATAGCTTGCCTCAACAGAGAATCAGAATTCTTTTTATTCGGTATA
ACAACCTTAAAAACGAATCGATCTAGATGCCCCGCTCTTGCCATCTTTGATGGAATTGAATCATC
AACTGACTTACTTGAGGAATAAAAAAATCTGCAGCTTTCGATTCTTGTCTATCGGATTCTATTGA
GAAGAAGGGACAACCATCCATCCTCCCCGAAACTAGTTTAGTGCCTGAACGAGATTGGTGGCACT
TATGACGAGAAAACAAACTCTTTCTTCTGTTCAAAAGCTAGTAGTGCCGTAGTGCCAATCTACTC
CGAAGAACAAGCTTCTTTGCAAAACTACTTTCTTCTACGGAGCTACCTCCGTCTCACTCTTGTAC
CGAATGCTACCTGGCATAACATCCTTACTTAAATATCTTCCGCTC
Found at i:90892 original size:11 final size:11
Alignment explanation
Indices: 90876--90903 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
90866 GTCGTCATGG
90876 GAAAGAAATAA
1 GAAAGAAATAA
90887 GAAAGAAATAA
1 GAAAGAAATAA
90898 GAAAGA
1 GAAAGA
90904 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 90376 -- 90875
TGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAG
ATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGACGGGCACTCCAG
GATCCGCCTACGCTCGTGAAAACCCAGGTTGGTCCTCCGACCAGATGTGTGGATAACGAGGCCAC
CTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGTCGCTCA
ACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 90904 -- 91403
GATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGA
ACGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCT
ACATTCGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAA
AGGAACAAGCAACGGATTGAGCGCACTAGCGCGAAAGAACAAGCTGCTTCTTGTTTAGGGTCTTG
ACTCTTGAGTCTGAGAGGGAGAAGGCTTCCCGCGTGGGCGGATTAGCAATCCCTAGTCTTCCATA
ACGCGTATTGGACTTATGTTTCCTCCTCCTCGAAGATGATGGATC
Found at i:103111 original size:22 final size:23
Alignment explanation
Indices: 103086--103130 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
103076 CCCACCTGAG
103086 CATTCTACTT-CCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
*
103108 CATTCTCCTTCCCCCCTATTGGA
1 CATTCTACTTCCCCCCTATTGGA
103131 TTACTAGTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.16, C:0.40, G:0.09, T:0.36
Consensus pattern (23 bp):
CATTCTACTTCCCCCCTATTGGA
Left flanking sequence: Indices 102586 -- 103085
CTAATTTATTTTTGCACTATGTTGAGATTCTTTTCTTGCCGGTGTGGTAGATAAGAATGCGCCGA
ATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTAC
CTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGTG
AGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTAC
CTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTCC
CTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTAT
AAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTTC
AGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAG
Right flanking sequence: Indices 103131 -- 103630
TTACTAGTCTCGCCCTCTAGTTACATACTATCTTCTTACGTTACATACTATCTTCTTACAGTGGA
TCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGGGCAATG
CCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATCTTATAG
GAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAGTAGAGT
ATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGTATTGTC
ACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTGAGTGGC
TGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCACAGTCA
CCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAG
Found at i:103173 original size:20 final size:20
Alignment explanation
Indices: 103150--103189 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
103140 TCGCCCTCTA
103150 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
103170 GTTACATACTATCTTCTTAC
1 GTTACATACTATCTTCTTAC
103190 AGTGGATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (20 bp):
GTTACATACTATCTTCTTAC
Left flanking sequence: Indices 102650 -- 103149
AATAAGTGTCAGGATTCCCATCCATCACAGAAATCGATCATTCCTTGGATTCCTCACTTTAGGTA
CCTATTATACTCGCGCTTCTTTCTCTTTCTATCTTGCCGGCTTTGGTTTCAGTCAGAGGATGGGT
GAGTCGTAAGGGGATTGGAATGGGAAACTTTGGGAGTCCTAACTCTTTCCTAGGAGTCAAAGTTA
CCTACCGAAGGAGCCATAGTAATGAGAAGTGGGGACTGGGCCTGCCTTGTTGGAACTCTATTTTC
CCTTTCTCTGGAGCTTCCACATAAGATAAGATTCAAGAGCTATAAGCTCACCTTGGGGTTCCTTA
TAAGCACTTGTCTTCTTTCTAACATCACCAGGTGTCAACCCAACCGGTTCTCTTCGTCTATCCTT
CAGTACGAGTTATCCGGTGCTTTGGCTTGGATTCCTCCCACCTGAGCATTCTACTTCCCCCTATT
GGACATTCTCCTTCCCCCCTATTGGATTACTAGTCTCGCCCTCTA
Right flanking sequence: Indices 103190 -- 103689
AGTGGATCACCATCTTGACAGCAACCTTTCCTACGTTCATGCGGGAGCCTTGATTTAGTACTCGG
GCAATGCCTATTGCTCTGTTGCCTAGAAGTCTCATACATATGTATAGGATCTCATCCATATTATC
TTATAGGAAGAGTAGTAACTACCTGCATTCGTATATTCCAAAAAAGAAGAAAGAATTCAACCTAG
TAGAGTATAACTTTGCTTGCCTAGCCTTTCAAAGCTATTGTTTGATTCTAGAAGGACCTTAGAGT
ATTGTCACTGTTCCACTGGAATAAAAATATTTGTCAGTGGTCAGTTTAGTTCGAACAACAAAGTG
AGTGGCTGGACTTCTAGTTTTGAACTCTGGCTAGAGTAACCAACCATCGAACCATCTCCAGGTCA
CAGTCACCCACCAGGAAGGCATAGAGGCAAGACAGAAAGTCAAGACAGCAGGAATCGAACCTAGT
CATAGTAAAATGATCATTCAAAGTAGACTTTTGTCATAGGGCAAA
Found at i:150446 original size:17 final size:17
Alignment explanation
Indices: 150424--150456 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
150414 AGGTTTGCTC
150424 TTATAATATACAATAGA
1 TTATAATATACAATAGA
*
150441 TTATAATATAGAATAG
1 TTATAATATACAATAG
150457 GTAGGGGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (17 bp):
TTATAATATACAATAGA
Left flanking sequence: Indices 149924 -- 150423
TGTCGACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCAAGGCTCGACTTTC
TCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTATACCATCAATCACTA
TCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGAGAACTACGCTCATATACGTCAATTCATTG
GAATCACGGTATCAGTAGAAGTTGTTAAGCACTCACTGGTTGATGTGATCAGTCATGGAATATAA
TAGGTAACAGAGGTAATGGTATCCTGGAGTTATTTTGCACAATGAATTTACAAGTAGATGAGTTT
GCACAATGAATTTAGCAGGAGTTTTATTATATCATTAATTTAGGAGGTATTTAGAACCAGCATTT
CATCGCCTATCTCTCACATTATCTATTAAGATAAAAATAAATAGGTAGCAAAGATCACTGGTCTA
GTTAACCACAAGGAGGAATATACAATAGGTAGGCTAGGTTTGCTC
Right flanking sequence: Indices 150457 -- 150956
GTAGGGGCTTGGGTTGGCTTGGCTTGCTCTTATCCTGTCCTGATAAGAGAGGGAGGTAAGCGCAT
TCATTTAGTTGAGTTTTCCTCCACTCCACCTTGGAACTCATGCACGGAATGGGGAAATAAGAAGA
TAAGTAAGCATGCATTGTCCTGTCTTTCCCCTACCTTGGATCCACTCTAAGGCCTAATGCCCTAA
GGTAGTCAGAAGGTTGGAGTTCGAGATACGTGTTCTTGCCCATAAGGGTAAGGTTACGTAGAGCG
AACGAGGTTGGTCAATAGGAAACCTGGGTTCCGTTAGCCTCAATCGAAACATAGAGTTCAATCCC
AGTGAGAAGGTTCAAGCTTTGCTTCTGCTTGTTTTAGCTTATACCCCTGATCCGTATATCTGCCT
TGGCCCCGCTTTGCATTCATAAATGTCACTATTCGTCGAGTGCTTCCTTACCTGTTTATCACCAG
CTCCCATTGCCAACTCTAAATTACATTCATTTCACTAGTCCGCCA
Found at i:271892 original size:25 final size:25
Alignment explanation
Indices: 271858--271905 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
271848 ATTTTTTTCT
271858 TTATTATATATACCATTCATATTTA
1 TTATTATATATACCATTCATATTTA
*
271883 TTATTCTATATACCATTCATATT
1 TTATTATATATACCATTCATATT
271906 AAAGTAAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (25 bp):
TTATTATATATACCATTCATATTTA
Left flanking sequence: Indices 271358 -- 271857
GGATATTGGATAGGCTAAGCTAGGTGTAGCCCGCTTTCTCTACGGTTTTGCTGAACTTGTCAAGC
CCGGGGGGCCTTTAGGGAATTTTGGAGAATGATAGATTCTAGGATAACACTTTCTATGGTTGAAA
GGGATGGCATGGGTTAAGCATCTGACTTTGGACCTTCGAGCTAAGTTATTTAATAAGGTCCTACT
AATTAATTGGAAATCCTTTTTACAAATCTCCTCCTCAGAGCGCCCTGTAACCTTACTTTTTCTGA
ATGGTACACCTTATTTAAGACATTCAGAATAGAAGAAGAGCAGTCGTCGATCGATTGAAAGTGGA
TTGACGGCATTCATCAGTTGATTGAAAATGGACTTTTCTTTTATGATCGAGCGAGGTCCCTTTTG
GGCTTAAAAGTCCTTTGAGCCGTGGAATCCCTTTTGTCTTGATTTAGGAGAATAGGCGCATTGAT
TAGGTTACGTGGTTTGAGCAATCTGCAGGAAGTTTATTTTTTTCT
Right flanking sequence: Indices 271906 -- 272405
AAAGTAAGACGGATAGGGCATATTTGACTAGGAAGCAAGCAAAGCTAGTCCCTCCATACCAGCTA
GCAGTCTTGTTTAGGGTGTCTCCTTCTTTACTGAGTAAGGTTCCCGGGTGCCTATGCGATTATTA
AGGCAGGGTGCTACTGTACCAGTAGTAGAGTGGCTTGAATCAAATCGTTTGTCTAGAGAGGGTGT
AGCGATAACCAAAGCTGACTGTACTAGAAACTTTAGATCCTGTATAGGCAACTGGCCTTAGAATA
GTGTCTTGAACTACAGGACAGGAACGACCCATAATCATTGACGAAGAAGGCTTGGAAAAGGATAA
AACATATTGAAGAGAAGCTTTCACAAAGGCCAATAGCCGATAGCTGATGTCACTAGCCTTAACTT
CTTTATCTACTTGAAAGCTGATGAGAGTACGGCTTTCTTAAAGGAAGTGTCCGTCCCTATGATAT
TATATCATAGTAAAGAGCCCTTGGATTCGCCTTTTTCCGTAAGCC
Found at i:285346 original size:16 final size:16
Alignment explanation
Indices: 285325--285357 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
285315 GGAATCAGGA
285325 AATAGCCACTTAAGTC
1 AATAGCCACTTAAGTC
*
285341 AATAGCCACTTCAGTC
1 AATAGCCACTTAAGTC
285357 A
1 A
285358 GTCCATCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (16 bp):
AATAGCCACTTAAGTC
Left flanking sequence: Indices 284825 -- 285324
ATATTGTTTTCTTGCCCGGGCATTGCTGCGGAAGAGTGAAATGAAAAACTCTTCTTGAAGAAGAG
GACTCTTCCGCTTGATCTTTTGATACGGTGAGGGAACAGGTTTTATGCGTTCTTTGAGCAAATGG
GGAAACAAACTGCTGATACAGAAATCTTTAACTGAACTGCCGAAGGCACAAGAGAGACTATAGCC
AGGAAGGATAAGCAAAGGAATCCAGATTCAATCGATTGTTTGAAGCCAAGGAGCAAGAAAACGGA
TGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTCAATCCGTTGCTTGTTCTCGAGCTAGTCCATCT
TTCTATACGAATTTCTTGAAAGAATACTTCTCTTATGATCTACTACGAGAGTGTCAAGCGGAGGT
GGAGAGCACAAGAAAACAGAAATTGCTGCGTTAAGCAAGTCACTTCTTCGGCTGGGCATCAACAG
ACAATCAAGCAATATCGGATTCAGGACGCCATATCGGAATCAGGA
Right flanking sequence: Indices 285358 -- 285857
GTCCATCAGTCTTTCCATATTATATTTCCAGTCAAGTCAGTCAACACTTCTACAATCCAGTCTCT
TAACACTAGCTTTACTTGGGAAAGTAGTGAAAGTCCTGCTGCTGGATAAAGATACTGGAAAAAGT
CTCAAGTTCCACTAGGCGAGATGAAAAAGTTCAGAACTGGGATGCCAAAAAGAGCCGATTTACAA
GCAAAATGAAAAAACTACCACTTTCCCACTATGTCGGAACTAGTTTTTTCGCTTTTTTAGCCGAT
TTTTTACCTTTTTTGGACCCATTCTATAAATGGATGGAAGAAATTAAACCAATTCTTTCCCGCCA
TAGGCGAAAAGTACTAATTTTTAATTCGCCTAAGGAATTGGCATTTTTCCGGGTCGTTTTAAAAA
ACATTTGTTCCAGCCATAGCGAAAAGTACTGAAAATTAACTTTCCCTCGTAAAAAGGAAAAAACT
GGGTGCAGAAAAAGGAAACTTTCTGTCCAGTCTGTGGCAAAAGTA
Found at i:345880 original size:23 final size:23
Alignment explanation
Indices: 345846--345893 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
345836 CAAATACTAT
*
345846 GATAGGATTGATTGGATTAAATA
1 GATAGGAATGATTGGATTAAATA
*
345869 GATAGGAATGATTGGATTGAATA
1 GATAGGAATGATTGGATTAAATA
345892 GA
1 GA
345894 ACAACTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (23 bp):
GATAGGAATGATTGGATTAAATA
Left flanking sequence: Indices 345346 -- 345845
CAAAGATTAACAGAATCTTCAAATTATACATTGACCGCTAAATACACACACAATGTTTAGTGAAT
CTTATGACAATCCAATCCAAGGATGGAACATCGTTTGTATGTGGGAATTTCTATGCTCTTGTCAA
ATTTGGGTTTTATACCGTTGTATGGTTCAGGTATATACCAGTTAGCGGTATAGAAGCGTTACCCG
TTGATCTGTTTCCAGAAGATTATCATGTCTTTCTCAATGAGAGGGCAAATGTGACTGATTATAGT
AAGGTAGTTTTCGTGGAAACGAAGGATCTTACTCCAGTAGTGCTGTCTGCCTTTCAAAATGATTA
TCCATTTAATGAAATGTTTGGTCCTATACCGGAAACAGAGAGTCCTCATAAAAGAAAATGGTTAC
TATCCATGGGTTTAGGTATAATGATCACTTTCCGCTTATCGGTAGGTGTGCTACCTGACATAAAC
GAAATTCTACTAAATTGAAAAAATGAAGATGAAACCAAATACTAT
Right flanking sequence: Indices 345894 -- 346393
ACAACTATGAAACATAATAGTTGATTGAATAGAATGTTGGTCTCACAAGTCGGTACGGTGTGCAT
ATCCATCCTTGGAAGAAGTAGCTCCGTCCCAGTCTTTGTCGGAACTTGAATCGAGGTAGGCAAAA
GAATCCTTACTCGGAACGAGCCCAAGATAAAAGGTCTAGTCCAATTTTAGTCTTGGTTGTACATC
GGTACTACGCACGGTAGGCATTTCTTCCCGTTATCGGGACTTGCACTTGCCCGGCCTTAGTGGTA
TTTTAATGATTTTCTTCCCCAGCAAATCAAGTAAATAGAAGTAATAATTCAAGTCCCTCCGTGGA
TTTGAACATACTTCGCTTCGTGGAGCCGAGGATTAGATCGATCTGAACTTTCATTTCTTCCATTC
GCAGTAATCGTTGGTTTTGTCCAATTCCTTCAATCATCACTGTTTTGTTCTGTAATTCCATTTCA
TTTTATCTATTTTCTTCAAGAAATTCCATTGATGTGCTTTTCTAT
Found at i:355781 original size:16 final size:16
Alignment explanation
Indices: 355756--355793 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
355746 AGTGCAAGCC
355756 TAAA-AGTCAGCTATT
1 TAAATAGTCAGCTATT
*
355771 TAAATAGTCAGGTATT
1 TAAATAGTCAGCTATT
*
355787 GAAATAG
1 TAAATAG
355794 CATGGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (16 bp):
TAAATAGTCAGCTATT
Left flanking sequence: Indices 355256 -- 355755
GGGGGTCGTACAAGGTCAGCAGTACCCCCTGTGAATCCACCACCTGTATGATAAGTTCTTAATGT
TAGTTGAGTGCCAGGCTCTTCAATAGATTGAACCGCAATAATACCTACGGCTTCCCCCAATTCGG
GGGGGGCCAATCTTTGTTTAAGGATGTTGGATAGGTGATTCATCAATGATGCCGATTGGGAATCT
AAGGAGGGGGCTCCGCCCTAGTACCGCTATATATCCATCTTCTGATAGTGGGTGGTTTTCGTACG
CGTAGCGCCTTGCTACCAAGTGCCAGTAGTGTAGGAGATCCCTGCAATAAGAGTTGTGAGTGAAA
TCGGTTGCTTGTTGCTAGCGGGAAGGAAGGAAAGGTCAGATTACCAAAAAAGCCAGCTGCATGTA
TACTCGTAGGAAACGACAAGATCAGATAGAACCGATAGAAAGTAAGAAGGGTAAGCAATCCTCTG
ATTCTATTTTTATAGTCGTCCGTCATTCGATCGATAGTGCAAGCC
Right flanking sequence: Indices 355794 -- 356293
CATGGTATTAAAAGGGTACCGAACTTCTATACTATAATAGTACCGAAGGCCTTTTCTTGTCTCAC
CGGATATGAAATGCAACCTTCTACTAAAAGTATGGGGGATAATATATTTTATCTAATTAGTACCC
TAAGGATACTCTTTTTTCTGCACGAACGATATACAAGTACTATCTATGTATTTGGTTACCTATGA
CCTATTACCAACTTAACTATGTTGGTCTTTCCCATTGAATGTCAGTCTTGAAACATTGCCTTGTA
TATTCAGAACAGTAATGAAATGTCTCTGAATCTGGTATCCAAACGTTGTAAGTCGTACCCGGTTA
TACGTATCACCCAACAACACGTCAAGGATGGTATCTCTTGAATAGGCGTATGAAAGATTTCTTGC
TTCTTTCGAGGAACCGGACACTGGCGCTTGGGTAAGGCGTTCTCGCAGCAAAATCCTTCGTGAGG
TCTATCTACTGGGCTTGAGTTTGAGGTCTACATCGTAGGTAGGGT
Found at i:355800 original size:16 final size:16
Alignment explanation
Indices: 355760--355802 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
355750 CAAGCCTAAA
* *
355760 AGTCAGCTATTTAAAT
1 AGTCAGGTATTGAAAT
355776 AGTCAGGTATTGAAAT
1 AGTCAGGTATTGAAAT
355792 AG-CATGGTATT
1 AGTCA-GGTATT
355803 AAAAGGGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 2 0.08
16 22 0.92
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
AGTCAGGTATTGAAAT
Left flanking sequence: Indices 355260 -- 355759
GTCGTACAAGGTCAGCAGTACCCCCTGTGAATCCACCACCTGTATGATAAGTTCTTAATGTTAGT
TGAGTGCCAGGCTCTTCAATAGATTGAACCGCAATAATACCTACGGCTTCCCCCAATTCGGGGGG
GGCCAATCTTTGTTTAAGGATGTTGGATAGGTGATTCATCAATGATGCCGATTGGGAATCTAAGG
AGGGGGCTCCGCCCTAGTACCGCTATATATCCATCTTCTGATAGTGGGTGGTTTTCGTACGCGTA
GCGCCTTGCTACCAAGTGCCAGTAGTGTAGGAGATCCCTGCAATAAGAGTTGTGAGTGAAATCGG
TTGCTTGTTGCTAGCGGGAAGGAAGGAAAGGTCAGATTACCAAAAAAGCCAGCTGCATGTATACT
CGTAGGAAACGACAAGATCAGATAGAACCGATAGAAAGTAAGAAGGGTAAGCAATCCTCTGATTC
TATTTTTATAGTCGTCCGTCATTCGATCGATAGTGCAAGCCTAAA
Right flanking sequence: Indices 355803 -- 356302
AAAAGGGTACCGAACTTCTATACTATAATAGTACCGAAGGCCTTTTCTTGTCTCACCGGATATGA
AATGCAACCTTCTACTAAAAGTATGGGGGATAATATATTTTATCTAATTAGTACCCTAAGGATAC
TCTTTTTTCTGCACGAACGATATACAAGTACTATCTATGTATTTGGTTACCTATGACCTATTACC
AACTTAACTATGTTGGTCTTTCCCATTGAATGTCAGTCTTGAAACATTGCCTTGTATATTCAGAA
CAGTAATGAAATGTCTCTGAATCTGGTATCCAAACGTTGTAAGTCGTACCCGGTTATACGTATCA
CCCAACAACACGTCAAGGATGGTATCTCTTGAATAGGCGTATGAAAGATTTCTTGCTTCTTTCGA
GGAACCGGACACTGGCGCTTGGGTAAGGCGTTCTCGCAGCAAAATCCTTCGTGAGGTCTATCTAC
TGGGCTTGAGTTTGAGGTCTACATCGTAGGTAGGGTCTTCTAAAA
Found at i:357691 original size:14 final size:14
Alignment explanation
Indices: 357672--357699 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
357662 GATTCTTCCA
357672 CTTAGATGAAATAG
1 CTTAGATGAAATAG
357686 CTTAGATGAAATAG
1 CTTAGATGAAATAG
357700 TAAGTAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
CTTAGATGAAATAG
Left flanking sequence: Indices 357172 -- 357671
GACTTCACGAGTTTCAAACCTGTCTGTTAGAGGGGAGCCAACACTCTCTAACTACCTATACTACG
CCCCTATTGATTGGAAACCCTCGGGGATCCCATAGACAAAGGAATTATACAGTACGAAATAGCAA
AAAACAGACTAATTCGATTCTAAAAAATAGATAATAGATATGGGCTTTCTGCTCAAATTGTCTCC
TTTTCCTTCTGCTTGGACAAGGAGAGATATTCAATATTTGAACCAGATTGGATTTCATTCCACTT
TCCTATTTCTCAACAACAACTTCTCTCATCAGCTATTTCGCGTTTTCAAAGTCATTAATTGTCCC
ATTACCCTATTTTCTATTTCGATTGTATGGCGTAGCGTACGTTATGCAAACAGAATTCTACTTAT
TGGATGGAATAAGAAGAATTCTTCCATTCTTTTTCTCGAGGGAGAAAAACCAAACTAAAACTTTT
CGAGTTAGCGGAATTCCTAGTAAAAATAAATCCAGGATTCTTCCA
Right flanking sequence: Indices 357700 -- 358199
TAAGTAATAGTCCCGCTCGTATCCATGGAAATGGGAAAGGAATTATTCCTTTAGAACCATGGAAC
CCCCGAGCGGTTGTGGTTGTACCTGTACTTGCAGGGATACGAAAACTCGCTATTCACTCAGTTTC
TGGTCAATAATAAGATTATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCT
ATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCTGTTAATTCACCACCGA
CCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTA
AAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGA
ATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATT
TTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGA
Found at i:391180 original size:13 final size:13
Alignment explanation
Indices: 391162--391187 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
391152 AATTGGAACC
391162 ATTAACTATATTA
1 ATTAACTATATTA
391175 ATTAACTATATTA
1 ATTAACTATATTA
391188 TTTGTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTAACTATATTA
Left flanking sequence: Indices 390662 -- 391161
CAAAACAAACCCTAGTTTGAGGAAAGAACTGTGGGTTCTCAAAATCAAGTATCGCCGGGCCTAGT
TATTCTCTTGCCCCAACTTATGCGGGGTACGAATTTTTCGAGTTGGATCAGTACTATAAGCCTAA
GTATTTTATTGATCAGGCGGCACCCAGATTTGAACTGGGGATAAAGGATTTGCAGTCCCCTGCCT
TACCGCTTGGCCATGCCGCCAAATCCGATCTAAAATCGAGAAAAATCTTATTCATCCACATTATT
TTACTAATTATTGTTCGTAGGAGGGGATTACTAAACCCTTTTTTTTTCGTCGAATCCCTTTGTAC
TTATCCCTTTCCAATCCCTTTGAAGAAATTCATTCCGGTTTTTTTATTGGACCCAGTTTTATTCT
CTTCGATTGATTGTATCTCAAAACACACACTGCTTAAATACCTTCTCTTTCTATTGAAAAGAGAA
AGGGTTTCCAGTCACAGACTGAAAAATTTAGGACAAATTGGAACC
Right flanking sequence: Indices 391188 -- 391687
TTTGTTATTTTGATATTTTCTATTTGTTAGTAGTGAACGGTTCTAAAATGGGTATTGTATCCCTT
TTTCCTCGATCGTCAACGAGCAAGAAAACGGATGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTC
AATCCGGTGCTTGTTTGGATGTAAGAGATCTCGTTTGCTGGCCGGGCCCTTCCATGAGTTTAGAT
CTCTATGTATGAATCTCTTATTCAATCCCATACTTTTTCTCATTTCAGAACGATCAGCATACTGT
GTGACTTCTGCGTGACAGTTCTTGCATTTCGTTTGTTGCTTTGCATGAACATTTAGATATTGGAA
AGCCCTTAATTAGGAATTTCATAGATAGAGAAGGACGGGAAAAAAGAGAGAGACTGACTAACTAC
CCGGATCAATGCTGATTGACGACTGAATAAATAGCCGGAAGCAACAACTGCACGAGAGAGAAAGA
GCGGATCCAACTAAGGAAATGCAGTACCTGTTCTGCCGGAGCTAA
Found at i:416267 original size:16 final size:16
Alignment explanation
Indices: 416246--416278 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
416236 GGAATCAGGA
416246 AATAGCCACTTAAGTC
1 AATAGCCACTTAAGTC
*
416262 AATAGCCACTTCAGTC
1 AATAGCCACTTAAGTC
416278 A
1 A
416279 GTCCATCAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (16 bp):
AATAGCCACTTAAGTC
Left flanking sequence: Indices 415746 -- 416245
ATATTGTTTTCTTGCCCGGGCATTGCTGCGGAAGAGTGAAATGAAAAACTCTTCTTGAAGAAGAG
GACTCTTCCGCTTGATCTTTTGATACGGTGAGGGAACAGGTTTTATGCGTTCTTTGAGCAAATGG
GGAAACAAACTGCTGATACAGAAATCTTTAACTGAACTGCCGAAGGCACAAGAGAGACTATAGCC
AGGAAGGATAAGCAAAGGAATCCAGATTCAATCGATTGTTTGAAGCCAAGGAGCAAGAAAACGGA
TGCGCGTGCTAACGCTTTCGCGCTAGTGCGCTCAATCCGTTGCTTGTTCTCGAGCTAGTCCATCT
TTCTATACGAATTTCTTGAAAGAATACTTCTCTTATGATCTACTACGAGAGTGTCAAGCGGAGGT
GGAGAGCACAAGAAAACAGAAATTGCTGCGTTAAGCAAGTCACTTCTTCGGCTGGGCATCAACAG
ACAATCAAGCAATATCGGATTCAGGACGCCATATCGGAATCAGGA
Right flanking sequence: Indices 416279 -- 416778
GTCCATCAGTCTTTCCATATTATATTTCCAGTCAAGTCAGTCAACACTTCTACAATCCAGTCTCT
TAACACTAGCTTTACTTGGGAAAGTAGTGAAAGTCCTGCTGCTGGATAAAGATACTGGAAAAAGT
CTCAAGTTCCACTAGGCGAGATGAAAAAGTTCAGAACTGGGATGCCAAAAAGAGCCGATTTACAA
GCAAAATGAAAAAACTACCAAATTGCCCCATGCTGGCTATCAAGTTTTCAAAAATGGAGCAGATT
TTGGAGCCATTTACGAGGGAGAAGCAATTTTCTTTACTTTTGCACATGGTTGGGACAAATGCTTT
TCAAAAATGACCCTTGAAAATGCCACTTTCCCTAAGGAATGCAAAATAGTAACTTTTCCTACTAG
GTCGGATAGAATGGTGTTTTTCTATACTAAAATGAGTCAAATTCCGATAAAAAAGCGAAAAAAGT
TCTTCTCACCTAGTGCACCTTGGTACTTTCCTCTTCCGCCCTTAG
Found at i:426967 original size:23 final size:23
Alignment explanation
Indices: 426933--426980 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
426923 CAAATACTAT
*
426933 GATAGGATTGATTGGATTAAATA
1 GATAGGAATGATTGGATTAAATA
*
426956 GATAGGAATGATTGGATTGAATA
1 GATAGGAATGATTGGATTAAATA
426979 GA
1 GA
426981 ACAACTATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (23 bp):
GATAGGAATGATTGGATTAAATA
Left flanking sequence: Indices 426433 -- 426932
CAAAGATTAACAGAATCTTCAAATTATACATTGACCGCTAAATACACACACAATGTTTAGTGAAT
CTTATGACAATCCAATCCAAGGATGGAACATCGTTTGTATGTGGGAATTTCTATGCTCTTGTCAA
ATTTGGGTTTTATACCGTTGTATGGTTCAGGTATATACCAGTTAGCGGTATAGAAGCGTTACCCG
TTGATCTGTTTCCAGAAGATTATCATGTCTTTCTCAATGAGAGGGCAAATGTGACTGATTATAGT
AAGGTAGTTTTCGTGGAAACGAAGGATCTTACTCCAGTAGTGCTGTCTGCCTTTCAAAATGATTA
TCCATTTAATGAAATGTTTGGTCCTATACCGGAAACAGAGAGTCCTCATAAAAGAAAATGGTTAC
TATCCATGGGTTTAGGTATAATGATCACTTTCCGCTTATCGGTAGGTGTGCTACCTGACATAAAC
GAAATTCTACTAAATTGAAAAAATGAAGATGAAACCAAATACTAT
Right flanking sequence: Indices 426981 -- 427480
ACAACTATGAAACATAATAGTTGATTGAATAGAATGTTGGTCTCACAAGTCGGTACGGTGTGCAT
ATCCATCCTTGGAAGAAGTAGCTCCGTCCCAGTCTTTGTCGGAACTTGAATCGAGGTAGGCAAAA
GAATCCTTACTCGGAACGAGCCCAAGATAAAAGGTCTAGTCCAATTTTAGTCTTGGTTGTACATC
GGTACTACGCACGGTAGGCATTTCTTCCCGTTATCGGGACTTGCACTTGCCCGGCCTTAGTGGTA
TTTTAATGATTTTCTTCCCCAGCAAATCAAGTAAATAGAAGTAATAATTCAAGTCCCTCCGTGGA
TTTGAACATACTTCGCTTCGTGGAGCCGAGGATTAGATCGATCTGAACTTTCATTTCTTCCATTC
GCAGTAATCGTTGGTTTTGTCCAATTCCTTCAATCATCACTGTTTTGTTCTGTAATTCCATTTCA
TTTTATCTATTTTCTTCAAGAAATTCCATTGATGTGCTTTTCTAT
Found at i:436868 original size:16 final size:16
Alignment explanation
Indices: 436843--436880 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
436833 AGTGCAAGCC
436843 TAAA-AGTCAGCTATT
1 TAAATAGTCAGCTATT
*
436858 TAAATAGTCAGGTATT
1 TAAATAGTCAGCTATT
*
436874 GAAATAG
1 TAAATAG
436881 CATGGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (16 bp):
TAAATAGTCAGCTATT
Left flanking sequence: Indices 436343 -- 436842
GGGGGTCGTACAAGGTCAGCAGTACCCCCTGTGAATCCACCACCTGTATGATAAGTTCTTAATGT
TAGTTGAGTGCCAGGCTCTTCAATAGATTGAACCGCAATAATACCTACGGCTTCCCCCAATTCGG
GGGGGGCCAATCTTTGTTTAAGGATGTTGGATAGGTGATTCATCAATGATGCCGATTGGGAATCT
AAGGAGGGGGCTCCGCCCTAGTACCGCTATATATCCATCTTCTGATAGTGGGTGGTTTTCGTACG
CGTAGCGCCTTGCTACCAAGTGCCAGTAGTGTAGGAGATCCCTGCAATAAGAGTTGTGAGTGAAA
TCGGTTGCTTGTTGCTAGCGGGAAGGAAGGAAAGGTCAGATTACCAAAAAAGCCAGCTGCATGTA
TACTCGTAGGAAACGACAAGATCAGATAGAACCGATAGAAAGTAAGAAGGGTAAGCAATCCTCTG
ATTCTATTTTTATAGTCGTCCGTCATTCGATCGATAGTGCAAGCC
Right flanking sequence: Indices 436881 -- 437380
CATGGTATTAAAAGGGTACCGAACTTCTATACTATAATAGTACCGAAGGCCTTTTCTTGTCTCAC
CGGATATGAAATGCAACCTTCTACTAAAAGTATGGGGGATAATATATTTTATCTAATTAGTACCC
TAAGGATACTCTTTTTTCTGCACGAACGATATACAAGTACTATCTATGTATTTGGTTACCTATGA
CCTATTACCAACTTAACTATGTTGGTCTTTCCCATTGAATGTCAGTCTTGAAACATTGCCTTGTA
TATTCAGAACAGTAATGAAATGTCTCTGAATCTGGTATCCAAACGTTGTAAGTCGTACCCGGTTA
TACGTATCACCCAACAACACGTCAAGGATGGTATCTCTTGAATAGGCGTATGAAAGATTTCTTGC
TTCTTTCGAGGAACCGGACACTGGCGCTTGGGTAAGGCGTTCTCGCAGCAAAATCCTTCGTGAGG
TCTATCTACTGGGCTTGAGTTTGAGGTCTACATCGTAGGTAGGGT
Found at i:436887 original size:16 final size:16
Alignment explanation
Indices: 436847--436889 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
436837 CAAGCCTAAA
* *
436847 AGTCAGCTATTTAAAT
1 AGTCAGGTATTGAAAT
436863 AGTCAGGTATTGAAAT
1 AGTCAGGTATTGAAAT
436879 AG-CATGGTATT
1 AGTCA-GGTATT
436890 AAAAGGGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 2 0.08
16 22 0.92
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (16 bp):
AGTCAGGTATTGAAAT
Left flanking sequence: Indices 436347 -- 436846
GTCGTACAAGGTCAGCAGTACCCCCTGTGAATCCACCACCTGTATGATAAGTTCTTAATGTTAGT
TGAGTGCCAGGCTCTTCAATAGATTGAACCGCAATAATACCTACGGCTTCCCCCAATTCGGGGGG
GGCCAATCTTTGTTTAAGGATGTTGGATAGGTGATTCATCAATGATGCCGATTGGGAATCTAAGG
AGGGGGCTCCGCCCTAGTACCGCTATATATCCATCTTCTGATAGTGGGTGGTTTTCGTACGCGTA
GCGCCTTGCTACCAAGTGCCAGTAGTGTAGGAGATCCCTGCAATAAGAGTTGTGAGTGAAATCGG
TTGCTTGTTGCTAGCGGGAAGGAAGGAAAGGTCAGATTACCAAAAAAGCCAGCTGCATGTATACT
CGTAGGAAACGACAAGATCAGATAGAACCGATAGAAAGTAAGAAGGGTAAGCAATCCTCTGATTC
TATTTTTATAGTCGTCCGTCATTCGATCGATAGTGCAAGCCTAAA
Right flanking sequence: Indices 436890 -- 437389
AAAAGGGTACCGAACTTCTATACTATAATAGTACCGAAGGCCTTTTCTTGTCTCACCGGATATGA
AATGCAACCTTCTACTAAAAGTATGGGGGATAATATATTTTATCTAATTAGTACCCTAAGGATAC
TCTTTTTTCTGCACGAACGATATACAAGTACTATCTATGTATTTGGTTACCTATGACCTATTACC
AACTTAACTATGTTGGTCTTTCCCATTGAATGTCAGTCTTGAAACATTGCCTTGTATATTCAGAA
CAGTAATGAAATGTCTCTGAATCTGGTATCCAAACGTTGTAAGTCGTACCCGGTTATACGTATCA
CCCAACAACACGTCAAGGATGGTATCTCTTGAATAGGCGTATGAAAGATTTCTTGCTTCTTTCGA
GGAACCGGACACTGGCGCTTGGGTAAGGCGTTCTCGCAGCAAAATCCTTCGTGAGGTCTATCTAC
TGGGCTTGAGTTTGAGGTCTACATCGTAGGTAGGGTCTTCTAAAA
Found at i:438778 original size:14 final size:14
Alignment explanation
Indices: 438759--438786 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
438749 GATTCTTCCA
438759 CTTAGATGAAATAG
1 CTTAGATGAAATAG
438773 CTTAGATGAAATAG
1 CTTAGATGAAATAG
438787 TAAGTAATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
CTTAGATGAAATAG
Left flanking sequence: Indices 438259 -- 438758
GACTTCACGAGTTTCAAACCTGTCTGTTAGAGGGGAGCCAACACTCTCTAACTACCTATACTACG
CCCCTATTGATTGGAAACCCTCGGGGATCCCATAGACAAAGGAATTATACAGTACGAAATAGCAA
AAAACAGACTAATTCGATTCTAAAAAATAGATAATAGATATGGGCTTTCTGCTCAAATTGTCTCC
TTTTCCTTCTGCTTGGACAAGGAGAGATATTCAATATTTGAACCAGATTGGATTTCATTCCACTT
TCCTATTTCTCAACAACAACTTCTCTCATCAGCTATTTCGCGTTTTCAAAGTCATTAATTGTCCC
ATTACCCTATTTTCTATTTCGATTGTATGGCGTAGCGTACGTTATGCAAACAGAATTCTACTTAT
TGGATGGAATAAGAAGAATTCTTCCATTCTTTTTCTCGAGGGAGAAAAACCAAACTAAAACTTTT
CGAGTTAGCGGAATTCCTAGTAAAAATAAATCCAGGATTCTTCCA
Right flanking sequence: Indices 438787 -- 439286
TAAGTAATAGTCCCGCTCGTATCCATGGAAATGGGAAAGGAATTATTCCTTTAGAACCATGGAAC
CCCCGAGCGGTTGTGGTTGTACCTGTACTTGCAGGGATACGAAAACTCGCTATTCACTCAGTTTC
TGGTCAATAATAAGATTATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCT
ATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTCTGTTAATTCACCACCGA
CCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTA
AAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGA
ATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATT
TTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGA
Found at i:473547 original size:17 final size:17
Alignment explanation
Indices: 473525--473557 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
473515 AGGTTTGCTC
473525 TTATAATATACAATAGA
1 TTATAATATACAATAGA
*
473542 TTATAATATAGAATAG
1 TTATAATATACAATAG
473558 GTAGGGGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (17 bp):
TTATAATATACAATAGA
Left flanking sequence: Indices 473025 -- 473524
TGTCGACTATAAGAGTGCAGTCCAGAGAGATGGCTCTCTCTCTCTGGAATCAAGGCTCGACTTTC
TCTTCTTTCTTTTGGTATATTTTTGATACCTGTTTTCTATCAAAACTCTATACCATCAATCACTA
TCCTCAGGGATGGAATCCATCTCTCGGCGTACCAGAGAACTACGCTCATATACGTCAATTCATTG
GAATCACGGTATCAGTAGAAGTTGTTAAGCACTCACTGGTTGATGTGATCAGTCATGGAATATAA
TAGGTAACAGAGGTAATGGTATCCTGGAGTTATTTTGCACAATGAATTTACAAGTAGATGAGTTT
GCACAATGAATTTAGCAGGAGTTTTATTATATCATTAATTTAGGAGGTATTTAGAACCAGCATTT
CATCGCCTATCTCTCACATTATCTATTAAGATAAAAATAAATAGGTAGCAAAGATCACTGGTCTA
GTTAACCACAAGGAGGAATATACAATAGGTAGGCTAGGTTTGCTC
Right flanking sequence: Indices 473558 -- 474057
GTAGGGGCTTGGGTTGGCTTGGCTTGCTCTTATCCTGTCCTGATAAGAGAGGGAGGTAAGCGCAT
TCATTTAGTTGAGTTTTCCTCCACTCCACCTTGGAACTCATGCACGGAATGGGGAAATAAGAAGA
TAAGTAAGCATGCATTGTCCTGTCTTTCCCCTACCTTGGATCCACTCTAAGGCCTAATGCCCTAA
GGTAGTCAGAAGGTTGGAGTTCGAGATACGTGTTCTTGCCCATAAGGGTAAGGTTACGTAGAGCG
AACGAGGTTGGTCAATAGGAAACCTGGGTTCCGTTAGCCTCAATCGAAACATAGAGTTCAATCCC
AGTGAGAAGGTTCAAGCTTTGCTTCTGCTTGTTTTAGCTTATACCCCTGATCCGTATATCTGCCT
TGGCCCCGCTTTGCATTCATAAATGTCACTATTCGTCGAGTGCTTCCTTACCTGTTTATCACCAG
CTCCCATTGCCAACTCTAAATTACATTCATTTCACTAGTCCGCCA
Done.