Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_031390.1/NC_031390/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           104785
Total number of identified SSRs:                 64
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    7


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	43
2	20
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A	-	-	-	-	-	13	4	1		18
G	-	-	-	-	-		1			1
T	-	-	-	-	-	12	7	2	3	24
AT	-	9	6	2	1					18
CT	-	1								1
TA	-	1								1
TCA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	total
A/T	-	-	-	-	-	25	11	3	3	42
C/G	-	-	-	-	-		1			1
AG/CT	-	1								1
AT/AT	-	10	6	2	1					19
ATC/ATG	1									1