Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_059804.1/NC_059804/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           248619
Total number of identified SSRs:                 45
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	25
2	1
3	1
5	11
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
A	-	-	-	-	-	7	1	1		1					10
G	-	-	-	-	-	2									2
T	-	-	-	-	-	5	3	3	2						13
TA	-	1													1
ATT		1													1
CTTTA														1	1
TAAAG							1								1
TAATA	1														1
TATAA					1										1
TATTA		4	2												6
TTATA	1														1
CTATCG			1												1
GCCTTA					1										1
GCTATT												1			1
GGCTAG	1														1
TAAATC			1												1
TTTAGA	1			1											2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
A/T	-	-	-	-	-	12	4	4	2	1					23
C/G	-	-	-	-	-	2									2
AT/AT	-	1													1
AAT/ATT		1													1
AAAGT/ACTTT							1							1	2
AATAT/ATATT	2	4	2		1										9
AAATCT/AGATTT	1		1	1											3
AAGGCT/AGCCTT					1										1
AATAGC/ATTGCT												1			1
AGCCCT/AGGGCT	1														1
AGCGAT/ATCGCT			1												1