123.fas.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_065260
Parameters: 2 7 7 80 10 50 500
Length:  369673

Tables:   1   2   3   4   

This is table  4  of  4  ( 414 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326677--326746	33	2.1	34	91	2	115	7	37	27	28	1.83
326838--326928	35	2.6	35	94	1	157	9	29	34	26	1.89
326984--327046	9	7.0	9	83	0	81	14	68	0	17	1.22
326984--327045	18	3.4	18	95	0	115	14	67	0	17	1.23
327051--327168	34	3.4	34	97	1	218	9	30	30	29	1.88
328622--328686	33	2.0	33	100	0	130	15	38	18	27	1.91
328715--328768	28	2.0	28	92	3	92	12	38	24	24	1.90
328792--328921	24	5.6	25	61	21	66	25	26	35	13	1.92
328799--328875	25	3.2	25	62	20	65	25	24	37	11	1.90
328786--328923	46	3.0	46	98	0	267	23	26	36	13	1.92
329607--329666	23	2.5	24	86	5	77	21	41	26	10	1.85
329927--329955	15	1.9	15	100	0	58	27	24	6	41	1.80
330284--330373	34	2.6	34	98	1	171	28	30	32	8	1.88
332508--332554	9	5.2	9	94	0	76	17	61	0	21	1.34
332560--332788	64	3.6	64	99	0	449	14	28	32	24	1.95
333647--333875	64	3.6	64	99	0	449	24	32	28	14	1.95
333983--334026	22	2.0	23	90	4	72	25	34	31	9	1.87
334049--334097	22	2.2	22	100	0	98	28	32	30	8	1.86
334223--334279	19	3.0	19	100	0	114	47	15	10	26	1.78
335292--335321	9	3.3	9	100	0	60	20	56	0	23	1.42
336922--337027	6	18.2	6	71	24	77	37	17	0	43	1.56
336940--337022	19	4.9	18	72	26	74	39	18	1	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336960--337027	28	2.6	27	84	15	81	39	17	0	42	1.50
337037--337114	37	2.1	37	100	0	156	41	2	14	42	1.59
337511--337582	34	2.1	34	100	0	144	29	27	34	8	1.86
337630--337754	43	3.0	42	87	10	179	46	12	7	33	1.70
337686--337756	37	1.9	37	100	0	142	43	14	5	36	1.68
338766--338919	80	1.9	80	92	2	256	25	24	38	11	1.89
339195--339263	35	2.0	35	100	0	138	47	8	8	34	1.65
341802--341866	33	2.0	33	93	0	112	7	33	32	26	1.85
341992--342064	34	2.1	34	100	0	146	8	34	27	30	1.86
347295--347356	31	2.1	28	78	16	72	27	27	35	9	1.88
347303--347362	31	1.9	31	100	0	120	26	26	33	13	1.93
347486--347545	19	3.2	19	100	0	120	30	18	10	41	1.83
348054--348082	9	3.2	9	100	0	58	20	0	58	20	1.39
354401--354471	34	2.1	34	94	0	124	8	33	26	30	1.86
355709--355808	40	2.3	42	85	13	141	16	39	22	23	1.92
355811--355883	21	3.8	21	66	23	61	9	32	27	30	1.89
355815--356034	35	6.6	35	76	12	232	10	35	26	27	1.90
355797--356108	129	2.5	123	94	3	536	11	38	23	26	1.89
356438--356474	19	1.9	19	100	0	74	43	10	35	10	1.75
358064--358114	26	1.9	27	96	4	95	21	27	35	15	1.94
359463--359623	35	4.6	34	93	2	250	26	31	31	9	1.89
359463--359623	69	2.3	70	89	2	254	26	31	31	9	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360073--360221	37	3.8	38	91	6	212	44	12	6	36	1.67
360116--360223	37	2.9	37	100	0	216	43	14	5	36	1.69
360233--360302	33	2.1	34	91	2	115	28	27	37	7	1.83
362923--362966	22	2.0	23	90	4	72	25	34	31	9	1.87
364787--364846	33	1.9	30	83	12	77	11	38	21	28	1.89
364870--364938	35	2.0	35	100	0	138	34	8	8	47	1.65
367919--368256	35	9.7	35	99	0	649	25	34	28	11	1.91
368254--368289	9	4.0	9	92	0	63	19	0	69	11	1.18
368476--368595	35	3.4	35	96	0	213	10	28	34	26	1.90
368700--369673	82	11.9	82	100	0	1948	15	35	23	25	1.94

Tables:   1   2   3   4

The End!