Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065260
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 369673
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 3 of 4
Found at i:211756 original size:9 final size:9
Alignment explanation
Indices: 211744--211772 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
211734 CCGACCGAAG
211744 GGAGGAGTT
1 GGAGGAGTT
211753 GGAGGAGTT
1 GGAGGAGTT
211762 GGAGGAGTT
1 GGAGGAGTT
211771 GG
1 GG
211773 GTCTTCGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 211244 -- 211743
CGCCCTCTCCCTAATAAGGTCTCGTGTCTAAAGACCCGCATACATAATAGGCCCTTAGGCCACCA
CCCTAATATATTTATACGTGATTCTACCTCTTTTAGATCCAGGCTGCCCAACTCCTCTTTAAAGG
CGGAATTCAAATTTGTTGTCCTCCTGCCGGAGGGCGGGTCCGAGGCGAGGACAACTCCGACCTAC
CGGGAGGAGTTGGAGGACAACTCCGACCTACCGGGTCCGAGCGAAGCGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
GGGAGGAGTTGGGGGAGTTGGAAGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTC
CGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 211773 -- 212272
GTCTTCGGATCTTCCTCTGTGACTGTAGTAGGCTCCATGAGGTAGACCTCCTGCATAGTCACACC
TAGTGACCAAGGCACGGAGTCGGAGGACGGCTGAGTGTACTGCTTCTTGAGCCTGAGGGTCACTT
CCATCAACGTGAGGGTGCTGGACCTGAGCCTCTCAGAGAGGGTATATTCCCATTTTACCCCTCTC
TATCAAGGACAAACCCGCCTTTAAAGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTAT
CGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAG
TTGGGGGAGTTGGGCGCTTCGCGCGTTTTCTTAGGCCCCGGCATTTGACTCAAGAGGGAACTTCC
TTAACAGCCAAGCACTTCTTTCCCTACCCTATAACTGGTGTCACCTCGTTCACCCCACAAACTTT
TTGTTACCACGAACAGTAAAGCGCTAGGGCTAGTCAACAAGGGAA
Found at i:213453 original size:35 final size:35
Alignment explanation
Indices: 213407--213479 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
213397 AAAGGTCCCA
213407 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
213442 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
213477 GGG
1 GGG
213480 AGGAGTGGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.32, T:0.11
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 212907 -- 213406
AAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTT
AAAGTGGCACTTAAATTTCAAGGAAATTAAATTAAAGTAACGCCGAAGGGTCCGAGCGAAGCGAG
AACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATAATTCCGTCTGCGCCGC
CGTGCACGTTCAAAGTCAATTAATTTTCGAAGCTGAATTCAACTAATTTTCAATTAATTGAAAAT
TAGTTGAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACCTCAAG
GTCCGTTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAGGAGCT
GGTTTAAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCA
Right flanking sequence: Indices 213480 -- 213979
AGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGT
AAAGTACGTACCAAGAAAGTACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACG
TACCAAGGTCTGTAGGGTCCGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAA
TTCAATTAAAGTACAAACCTTTTAAAACGTTCCAGCCAATTCAGCCGATTCAAGGTCCACTAGGC
TCGAGTCCGCTAGGTCCGCTAGGCCCGGGTCCGCTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAG
AAGAGGCTAGCTCCAAGGTGGATAGCCCACAAAGAATGGAAGAGAGGGGAGGTTTCCTTCCCTTA
ATGGACTGGATAAGGTCGTACCGGAGAATGGGCTGGATCGGGCAGTACCGGGGAATGGGCTGAAG
GCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTCTAC
Found at i:213515 original size:9 final size:9
Alignment explanation
Indices: 213477--213512 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
213467 CCGACCTACC
213477 GGGAGGAGT
1 GGGAGGAGT
213486 GGGAGGAGT
1 GGGAGGAGT
*
213495 GGGGGGAGT
1 GGGAGGAGT
*
213504 TGGAGGAGT
1 GGGAGGAGT
213513 TGGTCCGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.67, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 212977 -- 213476
GGCACTTAAATTTCAAGGAAATTAAATTAAAGTAACGCCGAAGGGTCCGAGCGAAGCGAGAACAA
CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATAATTCCGTCTGCGCCGCCGTGC
ACGTTCAAAGTCAATTAATTTTCGAAGCTGAATTCAACTAATTTTCAATTAATTGAAAATTAGTT
GAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACCTCAAGGTCCG
TTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAGGAGCTGGTTT
AAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 213513 -- 214012
TGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTACGTACCAAGAAAGTACGTATCGGTACC
AAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAGGTCTGTAGGGTCCGCACCAAGGTTCG
CAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATTAAAGTACAAACCTTTTAAAACGTTCC
AGCCAATTCAGCCGATTCAAGGTCCACTAGGCTCGAGTCCGCTAGGTCCGCTAGGCCCGGGTCCG
CTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGTGGATAGCCCACAAA
GAATGGAAGAGAGGGGAGGTTTCCTTCCCTTAATGGACTGGATAAGGTCGTACCGGAGAATGGGC
TGGATCGGGCAGTACCGGGGAATGGGCTGAAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGC
TTCAAGCTCTACCTCTCCACCTTCTGGCATTCTCTCTCCCCAGTC
Found at i:213781 original size:24 final size:24
Alignment explanation
Indices: 213727--213781 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
213717 AGCCGATTCA
* *
213727 AGGTCCACTAGGCTCGAGTCCGCT
1 AGGTCCGCTAGGCCCGAGTCCGCT
*
213751 AGGTCCGCTAGGCCCGGGTCCGCT
1 AGGTCCGCTAGGCCCGAGTCCGCT
213775 AGGTCCG
1 AGGTCCG
213782 TTCTAAGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (24 bp):
AGGTCCGCTAGGCCCGAGTCCGCT
Left flanking sequence: Indices 213227 -- 213726
AAAATTAGTTGAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACC
TCAAGGTCCGTTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAG
GAGCTGGTTTAAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTG
GGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTAC
GTACCAAGAAAGTACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAG
GTCTGTAGGGTCCGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATT
AAAGTACAAACCTTTTAAAACGTTCCAGCCAATTCAGCCGATTCA
Right flanking sequence: Indices 213782 -- 214281
TTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGTGGATAGCCCACAAAGAATGGAAG
AGAGGGGAGGTTTCCTTCCCTTAATGGACTGGATAAGGTCGTACCGGAGAATGGGCTGGATCGGG
CAGTACCGGGGAATGGGCTGAAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTC
TACCTCTCCACCTTCTGGCATTCTCTCTCCCCAGTCGGCTGGGATAGAGTCAGTCTCTCCACCTT
CCCCAATCGATTGGGGAGAATGATGCATATTGGGGAATGAGCTGAGAAGGCCCTGCTAGGGAATG
GGCAGGATTAGGCCATACCGTCAATTTCCAGGCTCTCTCTTGCTCCGACTTCCGCCTTGATTGGG
GAATGGAACTTCCAGGCCTTTTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTA
GTCCGAGCTGGGGCCCCAATCGATTGGGGCATCTTCCCGGGCGAA
Found at i:213905 original size:27 final size:27
Alignment explanation
Indices: 213869--213931 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
213859 TCCTTCCCTT
* *
213869 AATGGACTGGATAAGGTC-GTACCGGAG
1 AATGGGCTGGAT-AGGGCAGTACCGGAG
* *
213896 AATGGGCTGGATCGGGCAGTACCGGGG
1 AATGGGCTGGATAGGGCAGTACCGGAG
213923 AATGGGCTG
1 AATGGGCTG
213932 AAGGCCTGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.24, C:0.16, G:0.43, T:0.17
Consensus pattern (27 bp):
AATGGGCTGGATAGGGCAGTACCGGAG
Left flanking sequence: Indices 213369 -- 213868
GCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGTGAGGACCACTCC
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGG
GGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTACGTACCAAGAAAG
TACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAGGTCTGTAGGGTC
CGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATTAAAGTACAAACC
TTTTAAAACGTTCCAGCCAATTCAGCCGATTCAAGGTCCACTAGGCTCGAGTCCGCTAGGTCCGC
TAGGCCCGGGTCCGCTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGT
GGATAGCCCACAAAGAATGGAAGAGAGGGGAGGTTTCCTTCCCTT
Right flanking sequence: Indices 213932 -- 214431
AAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTCTACCTCTCCACCTTCTGGCA
TTCTCTCTCCCCAGTCGGCTGGGATAGAGTCAGTCTCTCCACCTTCCCCAATCGATTGGGGAGAA
TGATGCATATTGGGGAATGAGCTGAGAAGGCCCTGCTAGGGAATGGGCAGGATTAGGCCATACCG
TCAATTTCCAGGCTCTCTCTTGCTCCGACTTCCGCCTTGATTGGGGAATGGAACTTCCAGGCCTT
TTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTAGTCCGAGCTGGGGCCCCAAT
CGATTGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTT
CTACTGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTT
GCGGAAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGA
Found at i:214705 original size:14 final size:14
Alignment explanation
Indices: 214679--214719 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
214669 GTAAAGAAGA
*
214679 CTCTCTCCCCTTCC
1 CTCTCTTCCCTTCC
*
214693 CTTTCTTCCCTTCC
1 CTCTCTTCCCTTCC
214707 CTCTCTTCCCTTC
1 CTCTCTTCCCTTC
214720 TTTCCCGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (14 bp):
CTCTCTTCCCTTCC
Left flanking sequence: Indices 214179 -- 214678
ACTTCCAGGCCTTTTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTAGTCCGAG
CTGGGGCCCCAATCGATTGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAA
GGGCTCTACCTTTCTACTGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTA
AAGGTTGATTTTTGCGGAAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACT
CCCTCTCTTCCCTGGGGTAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCT
CTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCC
CTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGA
Right flanking sequence: Indices 214720 -- 215219
TTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGCACTGGTGGAACCGAAACTGTTGGT
GCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAAGTTGGTGCCGGAA
CTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTG
TCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGC
GATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGA
AACTCTCTTCCCTAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCT
AGCTGAGGGAAAGGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGG
TCTTCCCGGAAGGAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAA
Found at i:214779 original size:15 final size:15
Alignment explanation
Indices: 214761--214859 Score: 76
Period size: 15 Copynumber: 6.7 Consensus size: 15
214751 ATCAATTGGC
*
214761 ACTGGTGGAACCGAA
1 ACTGTTGGAACCGAA
** *
214776 ACTGTTGGTGCCGGA
1 ACTGTTGGAACCGAA
*
214791 ACTGTTGGAACTGAA
1 ACTGTTGGAACCGAA
** *
214806 ACTGTTGGTGCCGGA
1 ACTGTTGGAACCGAA
*
214821 ACTGTTGGAACTGAA
1 ACTGTTGGAACCGAA
** *
214836 A--GTTGGTGCCGGA
1 ACTGTTGGAACCGAA
214849 ACTGTTGGAAC
1 ACTGTTGGAAC
214860 TGCTACAGCT
Statistics
Matches: 60, Mismatches: 22, Indels: 4
0.70 0.26 0.05
Matches are distributed among these distances:
13 9 0.15
15 51 0.85
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (15 bp):
ACTGTTGGAACCGAA
Left flanking sequence: Indices 214261 -- 214760
TGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTTCTAC
TGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTTGCGG
AAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACTCCCTCTCTTCCCTGGGG
TAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGG
TAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCC
CTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCC
CTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGC
Right flanking sequence: Indices 214860 -- 215359
TGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGG
CAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGA
TGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTC
CCTAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGA
AAGGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGA
AGGAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTG
AGACATGGAAAATGAGTTCGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGC
TACGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACAC
Found at i:214807 original size:30 final size:30
Alignment explanation
Indices: 214761--214861 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
214751 ATCAATTGGC
* *
214761 ACTGGTGGAACCGAAACTGTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
214791 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
214821 ACTGTTGGAACTGAAA--GTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
214849 ACTGTTGGAACTG
1 ACTGTTGGAACTG
214862 CTACAGCTCC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 25 0.36
30 44 0.64
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.25
Consensus pattern (30 bp):
ACTGTTGGAACTGAAACTGTTGGTGCCGGA
Left flanking sequence: Indices 214261 -- 214760
TGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTTCTAC
TGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTTGCGG
AAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACTCCCTCTCTTCCCTGGGG
TAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGG
TAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCC
CTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCC
CTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGC
Right flanking sequence: Indices 214862 -- 215361
CTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCA
GGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATG
CTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTCCC
TAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGAAA
GGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAG
GAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAG
ACATGGAAAATGAGTTCGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTA
CGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACACAT
Found at i:215053 original size:29 final size:28
Alignment explanation
Indices: 215011--215137 Score: 122
Period size: 30 Copynumber: 4.6 Consensus size: 28
215001 AGGGAATGAG
*
215011 AAGGAAACTCTCTTCCTTAGCGGCAGGGA
1 AAGGAAACTCTCTTCCCTAGCGG-AGGGA
215040 AAGGAAACTCTCTTCCCTA--GGA-GG-
1 AAGGAAACTCTCTTCCCTAGCGGAGGGA
** *
215064 AA--ACCCTCTCTTCCCTAGCTGAGGGA
1 AAGGAAACTCTCTTCCCTAGCGGAGGGA
*
215090 AAGGAAACCCTCTCTTCCCTAGCTGAGGGA
1 AAGGAAA--CTCTCTTCCCTAGCGGAGGGA
*
215120 AAGGAAACCCTCTCTCCC
1 AAGGAAACTCTCT-TCCC
215138 CTCTCTTCCC
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
22 13 0.16
24 4 0.05
25 4 0.05
26 3 0.04
27 2 0.02
28 6 0.07
29 22 0.27
30 28 0.34
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (28 bp):
AAGGAAACTCTCTTCCCTAGCGGAGGGA
Left flanking sequence: Indices 214511 -- 215010
TTCCCTGGGGTAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCT
CTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTC
CCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTC
CCTCTCTTCCCTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGCACTGGTGGAA
CCGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAA
AGTTGGTGCCGGAACTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTT
TGAGTTGTGAAGTGTCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCT
CTGTAGGGCTGGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAG
Right flanking sequence: Indices 215138 -- 215637
CTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTT
TCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTT
CGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAA
GTGCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAAT
GCCTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACC
ACCTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTC
CCCCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTG
GCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
Found at i:215066 original size:20 final size:21
Alignment explanation
Indices: 215041--215081 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
215031 CGGCAGGGAA
215041 AGGAAA-CTCTCTTCCCTAGG
1 AGGAAACCTCTCTTCCCTAGG
215061 AGGAAACCCTCTCTTCCCTAG
1 AGGAAA-CCTCTCTTCCCTAG
215082 CTGAGGGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.24
Consensus pattern (21 bp):
AGGAAACCTCTCTTCCCTAGG
Left flanking sequence: Indices 214541 -- 215040
AAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCC
AGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGT
AAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCCCTTCTTTCCCGGGAAAGGGG
GACTCCTGGCACAGAATCAATTGGCACTGGTGGAACCGAAACTGTTGGTGCCGGAACTGTTGGAA
CTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAAGTTGGTGCCGGAACTGTTGGAACTGCTAC
AGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCAGGCC
CGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATGCTGA
GAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAA
Right flanking sequence: Indices 215082 -- 215581
CTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTCCCCTCTCTTCC
CTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTTTCTCTCTTC
CCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTTCGCACTTAT
AATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAAGTGCTTCTA
CTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAATGCCTCAAAG
GGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACCACCTGGTTC
GAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTCCCCCCCGTC
CGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTA
Found at i:215097 original size:30 final size:30
Alignment explanation
Indices: 215061--215139 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
215051 CTTCCCTAGG
215061 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
1 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
215091 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
1 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
*
215121 AGGAAACCCTCTCTCCCCT
1 AGGAAACCCTCTCTTCCCT
215140 CTCTTCCCTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.20
Consensus pattern (30 bp):
AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
Left flanking sequence: Indices 214561 -- 215060
CCTTCCCTCTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCT
TCCCTTCCCTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTT
CCCTTTCTTCCCTTCCCTCTCTTCCCTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAA
TTGGCACTGGTGGAACCGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGA
ACTGTTGGAACTGAAAGTTGGTGCCGGAACTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGC
CTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCT
CCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGA
AACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTCCCTAGG
Right flanking sequence: Indices 215140 -- 215639
CTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTTTC
TCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTTCG
CACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAAGT
GCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAATGC
CTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACCAC
CTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTCCC
CCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTGGC
CCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCACTC
Found at i:215852 original size:35 final size:35
Alignment explanation
Indices: 215813--215920 Score: 216
Period size: 35 Copynumber: 3.1 Consensus size: 35
215803 TCCCACTCCT
215813 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
215848 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
215883 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
215918 CCC
1 CCC
215921 TAGTGTGAAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 73 1.00
ACGTcount: A:0.11, C:0.31, G:0.33, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 215313 -- 215812
GCTACGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGA
TCAAGGATTGGGCTGGAAATGCCTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAA
GAGGACTCGAACCTCTAACCACCTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGC
TTTCAGAAATGACACGCCTCCCCCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGG
TAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
TCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAATTCCTAGGGAGGAGTTGGCCCGAGAACG
AACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCGTTGCCAACTCCTCCCTATCGGTCGGAGT
GGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 215921 -- 216420
TAGTGTGAATGCTAAGAATGAGGAACCTACAGATCCCCTTGAACCTATAAGTATGTCGAGCTCTG
CCTTTGTCTCAATTACTAGTTCGGAGATAAGGGTTGCTTCCACTGGGTAGTACTATCAGTCCAAC
TCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGCCTTTAGGCACTCGACCGATAGGGAGAGG
GTCGGAGTTGTCCTCCTGTCGGAGGACCCTTGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCT
CCTGGATGCCATTTCTTGTGGGTATCTCTGTCCCACCCTAACGGTACTGTAACCGACAACGGAGG
CTGGCTGCCGGGGATGTCGCCACAGTTGGACAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTAT
CCTGCCGGGGTGGGAGGATTTGTGGACTGTTAGCCTAACTCCTGT
Found at i:216059 original size:9 final size:9
Alignment explanation
Indices: 216045--216074 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
216035 GTACTATCAG
216045 TCCAACTCC
1 TCCAACTCC
216054 TCCAACTCC
1 TCCAACTCC
216063 TCCAACTCC
1 TCCAACTCC
216072 TCC
1 TCC
216075 CGGTAGGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 215545 -- 216044
CGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCC
GACCTACCGGGTCCGAGGCGAGGACCACTCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAA
TTCCTAGGGAGGAGTTGGCCCGAGAACGAACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCG
TTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTC
CCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
CACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTAGTGTGAATGCTA
AGAATGAGGAACCTACAGATCCCCTTGAACCTATAAGTATGTCGAGCTCTGCCTTTGTCTCAATT
ACTAGTTCGGAGATAAGGGTTGCTTCCACTGGGTAGTACTATCAG
Right flanking sequence: Indices 216075 -- 216574
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTATCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAG
GACCCTTGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCTCCTGGATGCCATTTCTTGTGGGTA
TCTCTGTCCCACCCTAACGGTACTGTAACCGACAACGGAGGCTGGCTGCCGGGGATGTCGCCACA
GTTGGACAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTATCCTGCCGGGGTGGGAGGATTTGTG
GACTGTTAGCCTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCG
CTTCCAGGCCCAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTA
TGACGCGGGCTGCAGGACACACTCCCTTCAAGCCGATTTGGCCGG
Found at i:216112 original size:35 final size:35
Alignment explanation
Indices: 216073--216145 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
216063 TCCAACTCCT
216073 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
216108 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
216143 CCC
1 CCC
216146 TATCGGCCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 215573 -- 216072
TAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
TCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAATTCCTAGGGAGGAGTTGGCCCGAGAACG
AACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCGTTGCCAACTCCTCCCTATCGGTCGGAGT
GGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTAGTGTGAATGCTAAGAATGAGGAACCTACAGATCCCCTTGA
ACCTATAAGTATGTCGAGCTCTGCCTTTGTCTCAATTACTAGTTCGGAGATAAGGGTTGCTTCCA
CTGGGTAGTACTATCAGTCCAACTCCTCCAACTCCTCCAACTCCT
Right flanking sequence: Indices 216146 -- 216645
TATCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCT
TGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCTCCTGGATGCCATTTCTTGTGGGTATCTCTG
TCCCACCCTAACGGTACTGTAACCGACAACGGAGGCTGGCTGCCGGGGATGTCGCCACAGTTGGA
CAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTATCCTGCCGGGGTGGGAGGATTTGTGGACTGT
TAGCCTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCGCTTCCA
GGCCCAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTATGACGC
GGGCTGCAGGACACACTCCCTTCAAGCCGATTTGGCCGGAGAGGCCATGGTTATTAGAGGGAGAA
TCAACGATGTGGGGGTTGCATGATAGATTGGCCAGCCTCGGCACT
Found at i:216956 original size:35 final size:35
Alignment explanation
Indices: 216910--217052 Score: 286
Period size: 35 Copynumber: 4.1 Consensus size: 35
216900 CCCCACTCCT
216910 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
216945 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
216980 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
217015 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
217050 CCC
1 CCC
217053 TATCGGAATT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 108 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 216410 -- 216909
CTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCGCTTCCAGGCC
CAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTATGACGCGGGC
TGCAGGACACACTCCCTTCAAGCCGATTTGGCCGGAGAGGCCATGGTTATTAGAGGGAGAATCAA
CGATGTGGGGGTTGCATGATAGATTGGCCAGCCTCGGCACTTCAAACGGGCTAGCCAACAACTAC
TATTATCGGTCCTACGATGAGAGAGAGACGAATGAAATGGGGTAAATAATGATCCATAAGGGTGT
ATAGCTCAGTTGGTAGAGCATTGGGCTTTTAATCTAATGGTCGCAGGTTCGAGTCCTGCTATACC
CAACCCAACTCCTTCAAACCCCAGCGACGTGGCTAAAGTGGGGTCAATGGGTCCCCAGCACTTTC
TATATACGCAATTTCGGCCCAACTCCTCCCACTCCCCCCACTCCT
Right flanking sequence: Indices 217053 -- 217552
TATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTGCACTGTTCTATATACGCAATTCCATG
ATTAAGTCAGTGCAGGCAAGTAGGTGAAGTGATTGGGGCAACCGTAAAGAAAGGGTGTGGTCGGA
TGGAGAGGGATTCGAACCCCCGGTATTAATACAATACGTCAGTTTTCAAGACTGATACCTTAAAC
CACTCAGACATCCATCCTTTCATCAACAGGATCATAAGCCTAGAGAGCCTAGCTCTCTTCCTTGA
CTTGGAAGGACTGGAATTCACCTTCATTCCCTCTCAGGCTTCGGGGCTTCCCTTTCCTTTCCTGC
AACTTGCACCCGGGCGAAAATCCTTTAATTTTCAATGAAATTAGCCTTTTTTCGAGGCCTTCCTT
TAGATAAACTGACTCTTTTCGAGTTCCTTCCGGAACGAAAATCAATGGTCTTTAAATGCTTTTAG
TGGCATCAATCCTTCCAGATTCTGAGTTTCCGGCTGCCAGGTGAA
Found at i:219084 original size:10 final size:10
Alignment explanation
Indices: 219051--219085 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
219041 AAAAGGGCTA
*
219051 AATTAAATTC
1 AATTAATTTC
*
219061 AATGAATTTC
1 AATTAATTTC
219071 AATTAATTTC
1 AATTAATTTC
219081 AATTA
1 AATTA
219086 GCAGAAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (10 bp):
AATTAATTTC
Left flanking sequence: Indices 218551 -- 219050
TCTCTTGCCCATCTGAAGGAGAGGGGGAATTGGCCATTTTTTTGAAGGCCTTTCCCTGCACTGCA
TACAAACCTTACCACTGCCATTTCTGAAGGCGGAAAATGCTTCTATATACGTTATTTCAAGAGTG
TATTTTGCCGAGGTGCGGAACTTACTTATAGGAAGCGCTAAAAACTCCTTTTTTCTTAGGCAAAT
GAGCTTTAAAGTCATGTATTTTACCAAAACGCTTTTGAGTATGCTAGGCTTCTTCCCCCCGGCAA
TCTGAGGATGGGCCACGGTCCGGAGGCACTCGACCGATAGGGAGAGGACACGAAGACCGACCGAG
AGGGAGGGCCGCTAGGCACTCAACCGACGAGAGGAGGTTGAGGGAGAGGGGCCATCCTCGAAAGT
GGTAGGTAGTACTTTTAGAAGGCTGGGAGCCTTTTTGAGGAGAGACCTAGCTTATCCTCAAGATA
AGAGAGCCGCATCCTCAAAAGGAGGCGCCCTTTAAAAAAGGGCTA
Right flanking sequence: Indices 219086 -- 219585
GCAGAAAAGGGCTCTTTTGGGCTTTCTCCGAAGAGAGAGGTTTTGGGAGAGGGAGAGTATTTTAC
AACAAGGACTGAGACCGTTTTTCTATTTACCCCACAGTTTCACAGAGTCTGTAGTCTTACGTACG
CAGAGTCTTACTCTGTACGCAGAGCACAGTTCTCGACTTGAATCCTTTGCCTTCGCCGAAAGCAA
TCTCTCAGATTGGTAATTTAGCGATGGAGAATGCGCGTAAGCGTTGAATGTGGGGGCGCGCGCGT
TTAAAGTCATGTATTCTCCCGCTTAGTCGCGTTTGCAGAATCTGACACTTTCTGCGCTTTCAGTA
AAGGTTGGAAGGGGCAGATTTTGAGACTGAGGAGGTCGTTTCCCAGGGGTATCAGCGGTACCAAG
GCATAACGCTATGTTCCTTATGTCCCGCCAAGGCTAGAGACGCGCTCCGGAAGGTAAGTTACTTT
AATTTAATTTAGTGTAGAAATGACTTTTTAAGACGAGATTCGGCT
Found at i:221741 original size:6 final size:6
Alignment explanation
Indices: 221730--221780 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
221720 GACAATTCGA
221730 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
1 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
221778 TCC
1 TCC
221781 CTATCGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (6 bp):
TCCAAC
Left flanking sequence: Indices 221230 -- 221729
GAGCCTAGATCAGTTCGGTTTGGATCGGCCAATGAAGCCGCCCGTCCGTGCCAGTGAGTCCGTCT
CTCTGCCGACGAAGCGGCCCGTCCCATGGACGATCAGAGCTCCAACGTCCCTTCGGGCCTGTGGT
GTAGTGGGGTCGGCATTGAGCTAAAGAACGCGATATCGTCTTTGGGACCAAAATATTCTCAGCGC
CTTTTAAAGTACTGGTTTGAAGTGAAGCGGACCGCTTAAAGGGCTACTCCGACCTAGGAGTAAAT
CGCTATCAAGGCTGCCGGCCGGGACTCTCGAATCTGTTCCTCAGATCGAAGAAACCACCTTCCTA
CTTAGGGGCAGGCAGAAACTCCGCAGAGGCTTCCAGATTGCGTTCTGACGCCAGATATGGCCTTG
GATGTGGGATCCGGCACAAATCTCAGAATGCGATCCAAGGCCATTTTTACTGAGGGGTTGCCATC
AAGAAGGCGCAGGAGCGTAGCTTCCGTGCTACGTTGACAATTCGA
Right flanking sequence: Indices 221781 -- 222280
CTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTG
TCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACC
CTATCGGTCGTTGCCTAAAGGCCCTGAATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCC
TTCCAAGCCCTTCCACTGCCCGAACTACCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACT
CGAACTTCTGTCATGTCAAGCTTCCTGACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAAT
GGCCAAGCGCTACGCGCTTCACAGCTGGGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGC
TTTGGCGAGCAAGCGCGCCCGCTTTGGGCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCG
TTTAAAGCCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTT
Found at i:221923 original size:26 final size:26
Alignment explanation
Indices: 221779--221917 Score: 278
Period size: 26 Copynumber: 5.3 Consensus size: 26
221769 AACTCCAACT
221779 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
221805 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
221831 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
221857 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
221883 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
221909 CCCTATCGG
1 CCCTATCGG
221918 TCGTTGCCTA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 113 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (26 bp):
CCCTATCGGGAGTTGTCCTGAACGGA
Left flanking sequence: Indices 221279 -- 221778
GCCAGTGAGTCCGTCTCTCTGCCGACGAAGCGGCCCGTCCCATGGACGATCAGAGCTCCAACGTC
CCTTCGGGCCTGTGGTGTAGTGGGGTCGGCATTGAGCTAAAGAACGCGATATCGTCTTTGGGACC
AAAATATTCTCAGCGCCTTTTAAAGTACTGGTTTGAAGTGAAGCGGACCGCTTAAAGGGCTACTC
CGACCTAGGAGTAAATCGCTATCAAGGCTGCCGGCCGGGACTCTCGAATCTGTTCCTCAGATCGA
AGAAACCACCTTCCTACTTAGGGGCAGGCAGAAACTCCGCAGAGGCTTCCAGATTGCGTTCTGAC
GCCAGATATGGCCTTGGATGTGGGATCCGGCACAAATCTCAGAATGCGATCCAAGGCCATTTTTA
CTGAGGGGTTGCCATCAAGAAGGCGCAGGAGCGTAGCTTCCGTGCTACGTTGACAATTCGATCCA
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACT
Right flanking sequence: Indices 221918 -- 222417
TCGTTGCCTAAAGGCCCTGAATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCCTTCCAAG
CCCTTCCACTGCCCGAACTACCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACTCGAACTT
CTGTCATGTCAAGCTTCCTGACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAATGGCCAAG
CGCTACGCGCTTCACAGCTGGGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGCTTTGGCG
AGCAAGCGCGCCCGCTTTGGGCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCGTTTAAAG
CCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTA
AAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTC
ATGTATTTTACATGTATTCTCCCGCTAGATTTAGTAAATAGGAAA
Found at i:222268 original size:20 final size:20
Alignment explanation
Indices: 222243--222383 Score: 282
Period size: 20 Copynumber: 7.0 Consensus size: 20
222233 CCGTTTAAAG
222243 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222263 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222283 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222303 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222323 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222343 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222363 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
222383 C
1 C
222384 ATGTATTCTC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 121 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (20 bp):
CCCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 221743 -- 222242
CCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCCTATCGGGAGTTGTCCTGAACGGACCC
TATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGT
CCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGTCGTTGCCTAAAGGCCCTGA
ATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCCTTCCAAGCCCTTCCACTGCCCGAACTA
CCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACTCGAACTTCTGTCATGTCAAGCTTCCTG
ACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAATGGCCAAGCGCTACGCGCTTCACAGCTG
GGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGCTTTGGCGAGCAAGCGCGCCCGCTTTGG
GCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCGTTTAAAG
Right flanking sequence: Indices 222384 -- 222883
ATGTATTCTCCCGCTAGATTTAGTAAATAGGAAAAGAGTGGCTTCTAGCTAGCTCCAAAAACTAC
TACCTGCGGAGAAGGAATCGAACCGCTTTTAAAGCGGTCTGCCGGGATAATTTACCATTAATCTA
TATCCGCTGAGTACAACACAACTGACTAAGGGCTACAGTGTTGTTGGAACGTATTCACTAGCCGA
GCACTGGCATAGGCGCTAGCGAGTCGTGTCAGCGCGAATATTTACCAACACCGTCCAAAGTCTCT
TCACCTTACTTATTACTTGGGACCTTAGGAACCTGCCGGAATCAGCCGGCGGGGGCTCTTACTGA
AGACCTTCCATAGCCCTTTTAAAGTGCTTGAACTAACGAAATATCAATCACTGGAGTTGGTTTTC
TAACAAAGTATCCGGCCTTTTAGTCATGGCAGAGCGAAGTGAATGGCCGAATTTTGAATCGGAAT
AATTCCGAACTTAGCGGTTCCCGTCTAGGCATTATTTGGTAGCAT
Found at i:224373 original size:15 final size:15
Alignment explanation
Indices: 224353--224381 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
224343 TGCTGAAAGG
224353 TAGAGATACTGGTGC
1 TAGAGATACTGGTGC
224368 TAGAGATACTGGTG
1 TAGAGATACTGGTG
224382 GTGGGGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (15 bp):
TAGAGATACTGGTGC
Left flanking sequence: Indices 223853 -- 224352
AATTAATGAACCCCGGCGCTTTCCAAAAAAGAAAGCGCGTAGCAGCTACTGCCGGAACTTGCAAT
CCCCTTTCCGATCCACCTCCCACGCGAAAGAGTGCGGGGAAGCCTTTAAGTAGCTGCTGGGCTAT
TGATCCCTCTCTTTTCCCTATAGTGAGTAGCCGCTTTTCTTTGAATCCGGCAGCTAGCTAGCTAC
TGACACCAACCAATTGGTGGAGGTCTAGGCAGTAGCGCCCCAGCCTTTAAGGAACCAGCCTTTAA
AATGCTAGCTTCCCCAGCCCAGCTAGCTAGCCCAGTATCGCTCCGCTTCGCCACTAGCCTTTTTC
GTCAAATCTGTTTACACGAATTCGATCGATAGGGGTGTCACATACTGGACCTTCATCGATGGGTA
CCTACCGGGAGGGGGAGGGTCCGAAGGACACTCGACCGATAGGGAGAGGGAGAGGGGGTTTTACT
AAATCAGAAGTTACTCTGGATGATGAAGGTGGGACTGCTGAAAGG
Right flanking sequence: Indices 224382 -- 224881
GTGGGGCGGAGCGTGTCACGCGTTTTCCTTAAAGGATTTCCGGACCTTTAAGGTGGCGGTGAAAG
CCTTTTAAATGGTGGACTCCCTTTTTCGGGTTCTCTAGAGGAAAATCGTGTTGATGCCTGCTTTA
AATGCTTTAAACTTTAATTTAATTTCATTGAAAATTAAAGTAGCTCTACTCTAAAAACCTTTAAT
TTTCAATGAAATTAGATTCGATGGGGCGATTGGAGGCAACTCGGGGGGCTGGAAGGGGCAGGGAA
AGCGCTTCTCGCCACCCCCCATCCCGCGAAAGCGCTGTCAACACTCGATCGGGTCTACCAAAGAA
CCTTTAATTTCATTGAATTTAAAATTCAATGAAATTCTCGAAAGTAACTTTCATTTTAAATTCAA
TGAAATTAAAGGTTCTTATCGAAGGCCCGGCAAACCAAAGTTTGCCCGCTAGGCAATCGGTCGAT
CAGATGCTACACTTCGATCAGAAGTTTTTGACTAAGAAAATGACC
Found at i:225975 original size:18 final size:18
Alignment explanation
Indices: 225954--226009 Score: 112
Period size: 18 Copynumber: 3.1 Consensus size: 18
225944 AGGGGTAAAG
225954 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
225972 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
225990 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
226008 GC
1 GC
226010 TCCCCTACCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (18 bp):
GCCAGTGAAGCCTTTTAA
Left flanking sequence: Indices 225454 -- 225953
ATAGTGGCCCGGCAGTGGCCTACTAAAGGCCACACCCTGCCCTAGGGGTAGGGGCGCGTAGCGCT
TGAAATGAAGTGTGTCACACTTCGGGCGGGGGGCGCTAGCGCTAGGTTTGAAGCAGCCGGCCCCC
AGCTGCGGAGCGAGTAGCGCCACTAATCACGAAGAAGTGGTACTTGGAGTAGTAGCACTTCACAA
ACCGGTAGATAGATTCGATCGACTGCATCCACCGGGCCCCTTTAAAAGTGCGCCTTAATAAGTGA
AAGAAAAAGAGAAAGAAGAACCTGGCTGGGGCCCCTACCCCAGCCAGTGGCTAACGCCCCTCAGA
TCCGCTTTGGGTAAGAACCCTGGTGAGACATAGGGCTTGCCGGCCCGCTGATGCTCTCTTCGGTC
ACACCCCTTTAAAGGCCGGAACCCTCTAGAAGAACGCGGGAGAGTAGCGACCTTCCCTCAGAGCG
CATTACCTTAATAAGTATTGTCCCTCCCGAAGAGAAGGGGTAAAG
Right flanking sequence: Indices 226010 -- 226509
TCCCCTACCCGAAACTTTAAAGACGTGCGATAAGCGCTTCGTGACATGTTTCAAAGGGGGTAGGG
GGCTGCCAGTGAAGCCACGCGCTTTAACCCCCTACCCGTACGTGGTCCGTATTCACACACACGTA
GAGCCACCTGAGCAGCCTACCTCTCTACAGCAGCCTGCATTTGCTTGGATCTATCTATTAGTTCA
TTGTGTGGATGTGCACCCTTTCCCTTTGCTGAATCCTCTAACGTTTCCTGTCTGCATAGTGTAGG
TCCAGTTAGGATACGTAGGGCTTCTGACTTTCAGCCGCCATGCGCCTTTGCTCCGTGAACAGCAG
AGGCCCCCAACCGCGCTGTACGCGCAGCTGAGTATCGCCTTTGTCACTCACAGGCAATTACGTCC
GGAGTCGTCGCTTGTACACTCTCCTTGTCCTCGGGTCCCTTACTCTCCCGCTTGTCATAGCCAGC
GACAAACACCACCTGATCTCGATGGCTAGTGGGGAATGACATAGC
Found at i:227430 original size:9 final size:9
Alignment explanation
Indices: 227418--227447 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
227408 CCGACCGAAG
227418 GGAGGAGTT
1 GGAGGAGTT
227427 GGAGGAGTT
1 GGAGGAGTT
227436 GGAGGAGTT
1 GGAGGAGTT
227445 GGA
1 GGA
227448 TTAAAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.57, T:0.20
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 226918 -- 227417
ATATAAAGGGACAGGACCCAGAGGGAGGCTAGTCCGTTAGACCCCAGAGGGTTTTCTTTGCGCGT
AGCACAAAAGAATCGTAGATAGATGCCGCAGCTACGCGCTTTCCGTCATCAGCCTTCGATTGGCA
GCTAACGCGCTTCTTTCTAGCGCTTTCCTGGCCCTACCCGGTCCGGCAGGGGTGATGGCCCCCTG
CCCTCAACCTCCCGGTTCGCGCATAGCGCTCACCCCTACTACACCTCCCGGTACCGGGTTCAGTA
GTGAGAAAGCGGTGGCGTTTTCCTGAAAAAAACCCTTTATTTCTTGAAAAGGCCTTTTAAAGGGC
AGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 227448 -- 227947
TTAAAGTTTAATTTTCAATTAAATGCGCCCCTTTTGGAAGGAAGGAAGCCCTAAAGAACCTTTAA
TTTAATTTCATTGAAAATTCAATGAAATTAAAGTAAAATACATGACTTTAAGCTACCCCTTCGAA
GTGCTGGCCTGCCACCGTGGGTGGGGGCGGGAGTTGGGCTTTAGCCACGTGGCTGGGGTGGGGGC
ACTGTAGTGGTCATAGGGAATAAGGGGCTACGTAGCTCTCCAAACCACCTTCAGCGAGGCCTTGT
AGTATGCTAGATGTATTGTCGTTTCTTTCTCCTGCCGGGGCCTTTTCAGGCGGCCTCTAGGTACC
ACTACTCGGTTGGGAGGTGCCCTCTCCCATTCTTCCTTCGTGAAGTAGTTAGTAACTACCAGCAT
TCTTAGCTCAGTTGGATAGAGCAACAACCTTCTAAGTTGAAGGTCACAGGTTCGAGTCCTGTAGG
ATGCAGAAGGCCCCGGAACGATCGGTGGAGGGGGGGTACAGCTAG
Found at i:228545 original size:35 final size:35
Alignment explanation
Indices: 228499--228625 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
228489 CAGGGTCCGT
* **
228499 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
228534 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
228569 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
228604 AGGACCACTCCGACCTACCGGG
1 AGGACCACTCCGACCTACCGGG
228626 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 227999 -- 228498
AAGTCTTTTCTCGCCATCTCAGAATCACGTAGATATAAAAAGCAGCCGAGGTTAGAGTCTGGAGC
GGTTCTTCAGGCCCTCCTTTCTTCAGCCCTCTCGCCCGTAAGCCATCCCAAGCCATCCCTCAGAG
CCGGCCCTTTCCAGCTTCCTTTTCCTCTTCCCGGGATTAAAACCCTTGAATTTTCAATGAAATTA
AATTAAAGTATTCAACTTGAATTTTCAATGAAATTAAATTAGAGTAACTTTACCGCAAGGGAATC
ATGTAAATAGAATGGCTCACGAACGAATCATTCATTAATATCACGCTGTAAATAAAGAACCACTT
AGTCACTTTTTTAAAGGCGGACAATCCATTTAGCTATTCGGAAATTTTCATTTGGTCTTGCACAA
CCAGGGTTTGGTGTGTAGGTACCAATATTACGTCTTATGATAGTAGGATCACGTAAGGAAACAGT
CGGTATTGATAGCATTCCATTCGCGGTTACACCACCAGGGTCCGT
Right flanking sequence: Indices 228626 -- 229125
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTTATTAATT
CCTGTGAGGTATTCTAGCGATATCGGTGAATCAAAGCCCTCAAGAGAAGAACTCATTAGGGTAGG
GCGCTGTTGATGGCCAGCGCTTCGACCCCGAGTGAGATTGGCCTTGCCGTCCCAAGAAAGTGTGT
TACACTACAGTTTGATCATGGTATAGCCTCTCCTCCCTTTCATGCGGGAAGGGAAGGCGTTTTTT
AAAAGGGTTAAGTTACCAGCAACTTTAATTTAATTTCATTGAAAATTCTAAGAATTTACCTGCCG
GTCGCTTTACGCTACCGGCCCTCCCGGATGTACCCTTTCTTCGGG
Found at i:228635 original size:9 final size:9
Alignment explanation
Indices: 228623--228658 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
228613 CCGACCTACC
228623 GGGAGGAGT
1 GGGAGGAGT
228632 GGGAGGAGT
1 GGGAGGAGT
*
228641 GGGGGGAGT
1 GGGAGGAGT
228650 GGGAGGAGT
1 GGGAGGAGT
228659 TGGCCCTCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.69, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 228123 -- 228622
TCAGAGCCGGCCCTTTCCAGCTTCCTTTTCCTCTTCCCGGGATTAAAACCCTTGAATTTTCAATG
AAATTAAATTAAAGTATTCAACTTGAATTTTCAATGAAATTAAATTAGAGTAACTTTACCGCAAG
GGAATCATGTAAATAGAATGGCTCACGAACGAATCATTCATTAATATCACGCTGTAAATAAAGAA
CCACTTAGTCACTTTTTTAAAGGCGGACAATCCATTTAGCTATTCGGAAATTTTCATTTGGTCTT
GCACAACCAGGGTTTGGTGTGTAGGTACCAATATTACGTCTTATGATAGTAGGATCACGTAAGGA
AACAGTCGGTATTGATAGCATTCCATTCGCGGTTACACCACCAGGGTCCGTAGGACCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 228659 -- 229158
TGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGTTATTAATTCCTGTGAGGTATTCTAGCGATATCGGTGAATCA
AAGCCCTCAAGAGAAGAACTCATTAGGGTAGGGCGCTGTTGATGGCCAGCGCTTCGACCCCGAGT
GAGATTGGCCTTGCCGTCCCAAGAAAGTGTGTTACACTACAGTTTGATCATGGTATAGCCTCTCC
TCCCTTTCATGCGGGAAGGGAAGGCGTTTTTTAAAAGGGTTAAGTTACCAGCAACTTTAATTTAA
TTTCATTGAAAATTCTAAGAATTTACCTGCCGGTCGCTTTACGCTACCGGCCCTCCCGGATGTAC
CCTTTCTTCGGGGCGCGCCTCCTAGCTGAAGGGTAGCTGCCCCGC
Found at i:229727 original size:9 final size:9
Alignment explanation
Indices: 229713--229741 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
229703 TCCTATCGGA
229713 CCAACTCCT
1 CCAACTCCT
229722 CCAACTCCT
1 CCAACTCCT
229731 CCAACTCCT
1 CCAACTCCT
229740 CC
1 CC
229742 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 229213 -- 229712
AACCTTTAATTTTCAATGAAATTAAATTACCCAAAACACGCGTTAGGGATTTCCGCTACGGGATG
GTCAAGAGCTCTTTCGGGGAGTTTTCCGTTCCAGGTTCAGAGTTTTCCCTCCTTTAAAAGCGAAC
TTTTAATTTCGTTAAATTAAATTGAATTAAATAAAGCCCTTTTTTCTTTCTTTAAAATCTGGTTT
TCTTTTTTTGTAGGGGAAAGGCCTAAACGGACTCTTTAACCCTACTAGAGTCTCTCTGTACAAGT
TCCAATTTAGTGACAAGTTTCCATTCAGTACTCCCGGTAGAGTGATAGCACTGCTGCATCACCTC
AATGGGGGGGCTTTATCGGTAGGGAATCCCCGCAGAGGCACTTTTCTGGGAGCAAGAATCCACGA
TTGACACCCCCCCCCACTATTACCAGAAAAACTTAGAAGGGAAGCACCTAACTAGGGCAGAGAGC
ACCTAAACCCAACTCCTCCCTATCGGTCGGAGTGGTCCTATCGGA
Right flanking sequence: Indices 229742 -- 230241
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTATCGGAGCTATC
GCTCGCCCAAGAATTGAATTTTATAGAAGCAATAACCAACCCCTTTAAAACCTGCTCAGCAGTTC
CCTACTCAGGATCTGGGAAAGGCCGGAATAGGTCCTTACTCAGGGAAGGATGCTCATCGAAGATG
GGGTACCTCAGCTGGAGTGGGAAGGTCCTTCCCCAGAGGGGGCCCCTCTTTGCATCGCACACCGT
GGTCCTTCTTCCTATCGTCTCCACCACAACCTCCTATCGCACACTTTATTAAGGGAAAGCGCTCT
TTCAAGCTACGCGCGCTGAGTGAGCCAAGCGTTCTGGGACCAGGGCAGCGCGTACAAAAAAGAAG
AATTCGGTAAGGAAGCCCTTTTCCGGGAGCATGCGCCCGCATAGT
Found at i:235681 original size:39 final size:39
Alignment explanation
Indices: 235624--235842 Score: 309
Period size: 39 Copynumber: 5.5 Consensus size: 39
235614 GACCCTTCGG
* *
235624 TCGGAGTTGTCCTCCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
235663 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
235702 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
*
235741 TCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
*
235780 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---
1 TCGGAG-TG--GTCCT-TCGGA---CCAACTCCTCCCTATCGGAAT
*
235823 TCGGAGTTGTCCTTCGGACC
1 TCGGAGTGGTCCTTCGGACC
235843 CTTGGGGGCC
Statistics
Matches: 166, Mismatches: 7, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
36 2 0.01
39 125 0.75
40 5 0.03
42 5 0.03
43 11 0.07
46 18 0.11
ACGTcount: A:0.16, C:0.34, G:0.23, T:0.26
Consensus pattern (39 bp):
TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
Left flanking sequence: Indices 235124 -- 235623
GAAGAGGATCGATGGGGTCAGGCTAGGGCGGCCTAGCCTCTGTTCCCCAGCCCTCCTCCAGAACC
ACCTACGGAAGCCTTTCGACTCTAGGCTCACCCTCCTGGATCTGGACCGTTTTGGAGGATTAGGC
TTACGTCGGGCCAACTCCTCCCGGTGAGGCGAGGCCTCTGAACCACCCAAGGACACTGTCATGGA
TATGGTTGGCCCCGACTCCCATGGGTCAGAATCCTTGGGGCAGGGTGGCCTAAGCCACCCCGGCG
GGCAGTTAAAAGTAGCGCTGCCAACTCCCCCCACTCCTCCCTTCGGAATTCAGAGTTGTCCTCGC
CTCGGACCCTTCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCC
CTCCGGCAGGAGGACAACAAATTTGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTCCCCCCACT
CCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 235843 -- 236342
CTTGGGGGCCCCTGGCGCCCTAGCGAGGGCTACGCGGCACTATTGTGGTCCGATCCCTCGCCTTC
GGCCCTCGGGAAGCGCCCTTTTTGGGAGAGAGGGGCGCCACTCGACCAACTAGGGGCGGAAGCCA
CTCAACTGATAAGAGAGGGGTCGCAAAAAAACGCTCGGCCCGGATGTTACCCTACCCGGCCTTCG
GCACTTTCTCTCGGCCAGGAGCCTCCTAGGTGGCCACACCCTTTCTTTACAGCCCCCTCGCTCTA
AAGGCCACCACTTTTTTTGGAAGGGCTACGGCATCGATCCTCCTTTATCTGCCCCACTATCGCTG
CTCCAGCCACAACATTGCTGTGATAGCCCCAGCCTGCTGCACTCGGGTCGGCCCTCTGTTCAATA
GGGTGCGGCTGAGCCAGAGTTCACTCAGCAGCAGTCAGCCGTAGGGCAGGGAAGGTTTTGGCTTC
TATCAGATACAGAAAGATACTACGAGTCCTCCGTCCCAGATTCCC
Found at i:238102 original size:12 final size:12
Alignment explanation
Indices: 238071--238102 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
238061 CGGACCCTTC
238071 GGCCTTTTAAAA
1 GGCCTTTTAAAA
238083 GCGCCTTTTAAAA
1 G-GCCTTTTAAAA
238096 GGCCTTT
1 GGCCTTT
238103 CTAAGGCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (12 bp):
GGCCTTTTAAAA
Left flanking sequence: Indices 237571 -- 238070
CGGCCACTCTCGGAAGGGTTGGGGACTTCTCATTCGGGAAACCGCGAAGCCCGACCAAGCATGAA
TCCATGAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAA
GGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGAG
TTTAATTTAATTGAATTGAATTGAATTTACCCGCCCGCCTCTCGTGCCGGGGTAAGTGCCGTAAG
GCAGGCACTTACCCTCGCGCCTCCACCCTTTATCGGGGGTGGTCCCCGTACGTAGGGAGCAACTT
GTGTGGCCGGGGCCTTCTTCCCAACTCCTCCCTTCGTCGGTCGGAGTTGTCCCCCAACTCCTCCA
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACC
GATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTC
Right flanking sequence: Indices 238103 -- 238602
CTAAGGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCAGGTTTTCGC
GCTATGCGCTCCCCTGGCCGACCGACCCCTCCTCCTATCGGGGGGAGTGGCTCGCGTTAGCTCGC
CCCAAAAGTCATGGATTCATGAAGGGGGAAGGCCAACTACAAACCTTACGTGCCCGAAAAAGGGA
AAGCGCCGTTTTCTGAGGAAAACGCGTAGCGTTTTCCGCGGGCGCTACGCGCTTCCCACGCCCTG
CCGCTTAGGCCTTCGGGGTGAACTCATCATCGAATTGGAACATGGTGTTGAGAGGGGGCTTCATC
CAGAAAAGGGATTGGCCCTTTTAGAAGCGGTTCTCCGCCTCACTTTTACCTCTTTGCCGCTAGGA
ATTTCTTGCACACGCGCTTGGCTCTTCCCCCAGTTTGGATTAACTTGATAACCCTCTTGTCTTAA
ATGGTTTTTGTAGAATACTGTACAATACGTTACAGTTCATTGCGT
Found at i:241354 original size:6 final size:6
Alignment explanation
Indices: 241343--241393 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
241333 GCGCACAAAG
241343 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
1 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
241391 TCC
1 TCC
241394 CTATCGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (6 bp):
TCCAAC
Left flanking sequence: Indices 240843 -- 241342
CCTTCCCAGAGAACCGTACATGATACTCTCGCATCATACGGCTCCGTCTCGAGATAGCGCTGATG
AGTCGGCCCCCTATGACAACTGTTTACGCGCTCCGCTAAAGCGGGCTTTATCTTAAAGGGGAAGC
GCGCTGTTTGGGAGAGGGGGTAGCAGCCGCACAATCGTGCCAGCCTTCTCTATTGGAAAGGGAAA
CGTTCCTTATCCGACTTCGCAATCAAACGCTGCTGAACCGGCGTTTTCACCCGTTTGCTTGCGGG
GGGGCACTATAGTGCGCGTGGCGCTTCCACAATAGTGGTCGAGTGCCTGGCAAACCGGGAGATTG
TATGTCGACCTGCCCGGGTACACCAGGCAGCAGGTCGACATACACTCGACTGGAAGGAGAGGGCA
AAGCCAAGCCGTGGAGGCAAGCACCGTAGCGCTTACCTCGCCGTAGGCCGCGCATAGGGGGCGGC
CCCCTGTAGTAGGGGCATAGTTGTTGAGGCGCGTAGCGCACAAAG
Right flanking sequence: Indices 241394 -- 241893
CTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTGT
AGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCGGAGGACCAACTCCTCCCTACGG
TCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGTTGTCCTCACTTCGTTCGGACCC
TTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATGGGCCAACTCCTCCCTAGGAATT
ATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGGAGTTGTCCTCGCTTCGCTCGGA
CCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGG
TTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCC
TCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Found at i:241428 original size:26 final size:26
Alignment explanation
Indices: 241392--241456 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
241382 AACTCCAACT
241392 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
241418 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
241444 CCCTATCGGGAGT
1 CCCTATCGGGAGT
241457 GTAGGCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (26 bp):
CCCTATCGGGAGTTGTCCTGAACGGA
Left flanking sequence: Indices 240892 -- 241391
CGAGATAGCGCTGATGAGTCGGCCCCCTATGACAACTGTTTACGCGCTCCGCTAAAGCGGGCTTT
ATCTTAAAGGGGAAGCGCGCTGTTTGGGAGAGGGGGTAGCAGCCGCACAATCGTGCCAGCCTTCT
CTATTGGAAAGGGAAACGTTCCTTATCCGACTTCGCAATCAAACGCTGCTGAACCGGCGTTTTCA
CCCGTTTGCTTGCGGGGGGGCACTATAGTGCGCGTGGCGCTTCCACAATAGTGGTCGAGTGCCTG
GCAAACCGGGAGATTGTATGTCGACCTGCCCGGGTACACCAGGCAGCAGGTCGACATACACTCGA
CTGGAAGGAGAGGGCAAAGCCAAGCCGTGGAGGCAAGCACCGTAGCGCTTACCTCGCCGTAGGCC
GCGCATAGGGGGCGGCCCCCTGTAGTAGGGGCATAGTTGTTGAGGCGCGTAGCGCACAAAGTCCA
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACT
Right flanking sequence: Indices 241457 -- 241956
GTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCGGAGGACCAACTCCTCCCTAC
GGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGTTGTCCTCACTTCGTTCGGAC
CCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATGGGCCAACTCCTCCCTAGGAA
TTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGGAGTTGTCCTCGCTTCGCTCG
GACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATTTTCAATGAAATTAAATTAAA
GGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACT
CCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGCCCTCCTATCG
Found at i:241944 original size:34 final size:35
Alignment explanation
Indices: 241859--241950 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 35
241849 TCCCACTCCT
241859 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
241894 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* * *
241929 CCC-TTCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
241951 CTATCGGAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 16 0.30
35 38 0.70
ACGTcount: A:0.10, C:0.32, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 241359 -- 241858
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCCTATCGGGAGTTGTCCTGAACGGACCCTAT
CGGGAGTTGTCCTGAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGT
TGTCCTCCTGCCGGAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCC
GATAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGG
TCAGACCCTTATGGGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGG
CGGAATTATTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCA
AGAACCTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAA
AGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 241951 -- 242450
CTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGG
AATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGAC
CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
ACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCC
CTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGACCAACTCCTCCC
TATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCT
TCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATC
Found at i:242033 original size:82 final size:82
Alignment explanation
Indices: 241937--242579 Score: 1223
Period size: 82 Copynumber: 7.8 Consensus size: 82
241927 GACCCTTCGG
*
241937 TCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
242002 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
242019 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
242084 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
242101 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
242166 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
242183 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
242248 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
242265 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTTCGGAC
242330 CAACTCCTCCCTATCGGAAT
63 CAACTCCTCCCTATCGGAAT
242350 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
242415 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
242432 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTTCGGAC
242497 CAACTCCTCCCTATCGGAAT
63 CAACTCCTCCCTATCGGAAT
242517 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
242580 CTTGGGGGCC
Statistics
Matches: 554, Mismatches: 1, Indels: 12
0.98 0.00 0.02
Matches are distributed among these distances:
82 390 0.70
85 164 0.30
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 241437 -- 241936
GAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCG
GAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATG
GGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGG
AGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATT
TTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTA
AAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 242580 -- 243079
CTTGGGGGCCCCTTGCTGGGGCCAAGCTGCCGGCCCCTAACCACCACATCATGAAGTGGATGGCG
GGCCCCACCACCACCTACAAAGTGGGTGGGTAGGGAGTTGGGTTTAAGCGCGTAGCGCTTCACAG
AATTGACCTTCAGCGCTGCTTCCCTTAGCTGCCATAAGGCGGCACCCTGTCCCCTCAGGAGAGGA
GCCCTGCACTCGACTGAAAGGAGAGGTCTTTGCGCCCGGCAGACGAGTGCTAAACTACCACCGGG
CACTATAGTGGAACTATAGTGCGCTTGAAAAGCGTTTTGAAGCGGCAGAGCGTAGCACTTAAGTA
CGCCCCCATGGATGCCGGAGGCCCTTCCTCAAGAAAGGGGAAGCGTAGCTTCCCGCAGAAATGCA
GGGCCTTTATTGGGATAAAGGGCCACTCCCCTCGTTGTTACTTCGTCAAAGGAAATGCTTGGCTG
AAAGGGAGCTGTGAGCCCCGAGGAAGGGAAGGGGCGCCCCCCTCA
Found at i:242115 original size:164 final size:165
Alignment explanation
Indices: 241937--242579 Score: 1227
Period size: 167 Copynumber: 3.9 Consensus size: 165
241927 GACCCTTCGG
*
241937 TCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-TCGGAGTTGTCCTTCGGACCA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
242001 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
66 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
242066 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
131 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
242101 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-TCGGAGTTGTCCTTCGGACCA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
242165 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
66 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
242230 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
131 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
242265 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-A-TCGGAGTTGTCCTTCGGAC
242330 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
64 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
242395 GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
129 GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
242432 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-A-TCGGAGTTGTCCTTCGGAC
242497 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
64 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
242562 GGAGTTGTCCTTCGGACC
129 GGAGTTGTCCTTCGGACC
242580 CTTGGGGGCC
Statistics
Matches: 475, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
164 206 0.43
167 269 0.57
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (165 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
Left flanking sequence: Indices 241437 -- 241936
GAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCG
GAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATG
GGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGG
AGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATT
TTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTA
AAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 242580 -- 243079
CTTGGGGGCCCCTTGCTGGGGCCAAGCTGCCGGCCCCTAACCACCACATCATGAAGTGGATGGCG
GGCCCCACCACCACCTACAAAGTGGGTGGGTAGGGAGTTGGGTTTAAGCGCGTAGCGCTTCACAG
AATTGACCTTCAGCGCTGCTTCCCTTAGCTGCCATAAGGCGGCACCCTGTCCCCTCAGGAGAGGA
GCCCTGCACTCGACTGAAAGGAGAGGTCTTTGCGCCCGGCAGACGAGTGCTAAACTACCACCGGG
CACTATAGTGGAACTATAGTGCGCTTGAAAAGCGTTTTGAAGCGGCAGAGCGTAGCACTTAAGTA
CGCCCCCATGGATGCCGGAGGCCCTTCCTCAAGAAAGGGGAAGCGTAGCTTCCCGCAGAAATGCA
GGGCCTTTATTGGGATAAAGGGCCACTCCCCTCGTTGTTACTTCGTCAAAGGAAATGCTTGGCTG
AAAGGGAGCTGTGAGCCCCGAGGAAGGGAAGGGGCGCCCCCCTCA
Found at i:243800 original size:39 final size:43
Alignment explanation
Indices: 243714--243809 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 43
243704 GCTGCCCTGG
*
243714 CCAACCCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTTG-CCTCCTGTC-G-GGA
*
243760 CCAACTCCTCCCTCTCGGAATTCGGAG-TG-GTCCT-TC-GGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCTCCTGTCGGGA
243799 CCAACTCCTCC
1 CCAACTCCTCC
243810 AACTCCTCCC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
39 14 0.29
42 2 0.04
43 4 0.08
45 2 0.04
46 26 0.54
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.24
Consensus pattern (43 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCTCCTGTCGGGA
Left flanking sequence: Indices 243214 -- 243713
AGTCGGCTGAACAGTTTGTTAAGCTATGGCGGTAATGGATTCTACGTAATAATTGCACCCACATC
CGATTGAGGGTGGTAATGGTACATAGTCACCCATTGGCCTTTTCGCACTGCTCGAGGCGCCAACG
GGGGACACGTGAGTTATACGCCGAACCTTCTGACTAACCTTACGGGGGCGATGCCTAGTAGAAAC
TTTTTAAGTCACTTCACTCATTCATGAAGTCTGGATCATTTTCGTCCGTGGGACAGGCAATGGGA
GGGTGCTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCATGTCAAACACACACAGCGGC
CCAACTCCCGGACCCACCCACTTTGTCACTACTATGGTGGTGGGGCTTTAGCCACGTCGCTGGGG
TAGGGGCCGGGGTGCGGACCCGGGCGGGTAGCGCTACGCGCTACCCTGGCCCCAGCAAGGGGCAG
GGGGCGCGTAGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGG
Right flanking sequence: Indices 243810 -- 244309
AACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGGAAGAC
AACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTCCGACCTACGGGAGGAGTTGGGCTTTA
GCCACTCAACCGACCGAAGGGAGGTTGAGGGGCTTTAGCCACTGGCTGGGGTAGGGGCCCCAGCC
AGGGTCCGGGAGTTGTGGGCGTTAGGAAGCCCCCAACTTTCTTTGTAGGTGGTGGTGGGTAGTTC
CGTTGGGCGGGGCCCCCCTAAGGGGGGCCCGCGGTGTCCCGTGCCGGGCCACCCTGCCCCTAGCG
TAGCCCCAAAAACCTTAGTTTCCTCGTCGTCCAGCCTCAACAGTCGTAGGTTGTTCCGCTCAAAA
TCTTCTTCTCTTCTTCTGGATTACCCCGCCGCCCTCCGACGTTGTTTCGTCCTCTAGCCAAGTCT
CCACTTCGCAATCTAACTCCCTTCTGTCCTTCGTCGCTAAGTGAG
Found at i:244924 original size:38 final size:38
Alignment explanation
Indices: 244873--245038 Score: 332
Period size: 38 Copynumber: 4.4 Consensus size: 38
244863 CGCTACTCCC
244873 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
244911 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
244949 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
244987 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
245025 CCGATAGGGAGAGG
1 CCGATAGGGAGAGG
245039 TGCCGGAATA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 128 1.00
ACGTcount: A:0.29, C:0.23, G:0.38, T:0.10
Consensus pattern (38 bp):
CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
Left flanking sequence: Indices 244373 -- 244872
CCGTTCTCTTTTCGGGGTTCCCCCACCTACCTGACGGTGGGGGAACCCGAGCCCCCTCTTCTGAG
GGGTCTCCCCCAACCCAGTAATTTGAGAATTCAATCCGCGCTTTAAAAGGCTTTTTCCGTCACTA
TACCGAAACAAATCACTCCGTTTCGTTCCAGCGACAACTAGAATACTCGCCAAAGGCCGGAACCG
ACCTGCTAGCCGCCTTCGGCAGGGGGGTGCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCC
TGCCCTCAGGACCGGTACGATTATCCCTGTCAACTCAATCGGTGGCTGACGAGTCTACGTCCATC
CCTGGGCGTCGGAGTTTGACCCGCCACCCTTGTAGCCGTCCCCTGGAATTCGCGCAAGTGTGTCT
GCACCCCCGGCGACTTGACGGAAAAGGAGGGAAGCTACCGAGGTTTTTCACGAGACCCTCACCCG
GCCCGTTAGGTCGCCCGATAGGGAGAGAGGCTTGCCGCTACTCCC
Right flanking sequence: Indices 245039 -- 245538
TGCCGGAATAGCTCGACCGGGTTCAACCCCCGGGGCTAGCGTAGCGCCGGGGAACTATAGTGCGC
TACGCGCTTTACCCGGTCCCCTGGGGAGACCACTATGGGTAGGGGGAACTACAGCAGTGTGGAAA
GCGCTACGCGCTTTCAACTGAAGTCACTAGAATCGCTACGCGCTTCCCCTTGTAGTGCCCCCCAT
GGGGCCAGGGCTTTAAAGCCCCTTCATCAGAAGTGGCCCAACTTTATGAAGTGCGGGCAGCGCCG
GCCTGGTTCCCGAATCACTATGTGCTGCACTCGACCGATAGGCCGAGGGACGACGAAGTTACTAC
TCGACCGATAAGTGGGTAGGGAGTTGGGCCGGTTTTCAGCGCGTAGCGCCTCAACCACTATAGTG
CCCCAACCTCCGTTACGTACGCGCTTGCCCTGTTTCTCGCAGCCAAACCTTCTTTATCCTCCACC
TAGGAGCACCTCTCCTGCATGTCCATACAGGACTCGAGTAGGCGG
Found at i:247180 original size:20 final size:21
Alignment explanation
Indices: 247134--247191 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
247124 TTGCCGGTGA
*
247134 GAGAGCGAGTCCGCCTGGGAG
1 GAGAGTGAGTCCGCCTGGGAG
*
247155 GAGAGTGAGTCCGCCTGGG-T
1 GAGAGTGAGTCCGCCTGGGAG
247175 GAGAGTGAGTCCGCCTG
1 GAGAGTGAGTCCGCCTG
247192 AAAAGGCGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (21 bp):
GAGAGTGAGTCCGCCTGGGAG
Left flanking sequence: Indices 246634 -- 247133
TAACTAAATTTTGGGTCGGGCGGGGGTGGTGGTCCCAAAGTGGGTGGTGGGGCGGCCCTTCTCTT
TCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCAT
CTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGC
TCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTT
AGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGT
TTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTCTCCCTACC
GAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATGTCCCCAAT
TGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGA
Right flanking sequence: Indices 247192 -- 247691
AAAAGGCGTCAACACCGGCGATTCAACTTCATTCGCGCTCCGAAGGGCCGATTGCCGCACCTTTT
AAAGGCCTATCGTCAATGGAAACATGGCCTGTTTCAGGTGGCAGCCTCCCTTCGCCCCTTCTCGT
AGCATCCGCAAACCTTTGCTCTACCTTCCCGGCAAGCGGGAGCAGCAATTCAAGGGAAAGTGGAA
GCAGCGATTGGTGGGTCCTTTCTGTTCGGTAAAAGCTATTTGGTTTCCCGGCTTTGCGGAAGGCA
AAGATTCCTTCCTTTGCGGAAGCTGCGACCTGCTTTGTGGGGAAGCATTTAAGTGCCGCTCCTTC
GCATCTGCAGAATTTGCTCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACTTTAAAGGGCCCACCTCCCCTTGAAGGGAA
AGTAAGACATGAGTGCCGCCTAGTCGCGATATCCTCCCCGGGGGC
Found at i:249888 original size:43 final size:42
Alignment explanation
Indices: 249821--249928 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 42
249811 ATTCCAGCGA
* *
249821 AGGACAACTCCGACCGATAGGGAGGAGTTGGCCCT-CCGATAGG-
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTGCC---AGGC
*
249864 AGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGTC
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGG-C
249907 AGGACCACTCCGACCGATAGGG
1 AGGACCACTCCGACCGATAGGG
249929 TCCGAACGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
41 3 0.05
43 53 0.91
44 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.35, T:0.13
Consensus pattern (42 bp):
AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGC
Left flanking sequence: Indices 249321 -- 249820
CCTTTTGCTTAGACTAGTCACCTAGGTTATCCAGCCTCCCCCGCTCTGGACAGTCAAAATAGAAC
TTCGTAGCATTAGGAAGGAGCTCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTAC
GTACACCTCCCCATACCCACTAGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAA
TAGCACTACGCGCTTTCCCACGGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATA
CGCGCTAATGGAATCGAATCCATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCT
AGTTCCCCCAACCCTTCAGGGTCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGC
GTCTAGGCGAAAGGGGTAGGGGGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCG
CCTTCTTTCTGGCTGTTTCTGTCCAAGAAAAACGGATTCCAGCGA
Right flanking sequence: Indices 249929 -- 250428
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTA
CCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCG
ACCTACCGGGTCCGAACGAAGTGAGGACCCTATCGGTCGGAGTGGTCCTCCTGTCGGAGGACCCT
AGAATGACTAAATTCGCTAGGCAAACGACAGGGTGATGCGGGATGCACAGAGCAGCTTACTTTGC
GCAAGCTAAGCTAGACGCAGGCACTTCGTAGTCCGATCACTCTCGCCGCTACCTGCACCTGCTCG
CGCTTGTTCCGTTCCTTCCCACCTGCCCCGCACCACCGAGAGCGCCCACCTAGACTCTTGGCCAA
AAAGAATACTTTTCACTCAGGCTTGTCGGTTCAACCAACCTCGTTAGCCCCCTTAAAAGTCTCGG
GTCAAAGCCCTCCCTTCGAAGTGACTTCGGAGTCCTAAAGTCCAT
Found at i:249953 original size:35 final size:35
Alignment explanation
Indices: 249907--250087 Score: 335
Period size: 35 Copynumber: 5.2 Consensus size: 35
249897 CTGCCAGGTC
* **
249907 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
249942 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
249977 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
250012 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
250047 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
250082 AGGACC
1 AGGACC
250088 CTATCGGTCG
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 143 1.00
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 249407 -- 249906
TCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTACGTACACCTCCCCATACCCACT
AGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAATAGCACTACGCGCTTTCCCAC
GGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATACGCGCTAATGGAATCGAATCC
ATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCTAGTTCCCCCAACCCTTCAGGG
TCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGCGTCTAGGCGAAAGGGGTAGGG
GGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCGCCTTCTTTCTGGCTGTTTCTG
TCCAAGAAAAACGGATTCCAGCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATA
GGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGTC
Right flanking sequence: Indices 250088 -- 250587
CTATCGGTCGGAGTGGTCCTCCTGTCGGAGGACCCTAGAATGACTAAATTCGCTAGGCAAACGAC
AGGGTGATGCGGGATGCACAGAGCAGCTTACTTTGCGCAAGCTAAGCTAGACGCAGGCACTTCGT
AGTCCGATCACTCTCGCCGCTACCTGCACCTGCTCGCGCTTGTTCCGTTCCTTCCCACCTGCCCC
GCACCACCGAGAGCGCCCACCTAGACTCTTGGCCAAAAAGAATACTTTTCACTCAGGCTTGTCGG
TTCAACCAACCTCGTTAGCCCCCTTAAAAGTCTCGGGTCAAAGCCCTCCCTTCGAAGTGACTTCG
GAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCC
ATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCT
TTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAA
Found at i:250923 original size:10 final size:10
Alignment explanation
Indices: 250908--250965 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 10
250898 ATCGTCTAAG
250908 GTCTAAGATC
1 GTCTAAGATC
250918 GTCTAAGGACGAATC
1 GTCT-A--A-GA-TC
250933 GTCTAATGATC
1 GTCTAA-GATC
250944 GTCTAAGATC
1 GTCTAAGATC
*
250954 GTCTAGGATC
1 GTCTAAGATC
250964 GT
1 GT
250966 GATCGTCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 19 0.46
11 9 0.22
12 3 0.07
13 1 0.02
14 3 0.07
15 6 0.15
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (10 bp):
GTCTAAGATC
Left flanking sequence: Indices 250408 -- 250907
CTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATT
TACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGT
TTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGC
TCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAG
CCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAG
TTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTC
AAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAA
GGCCTTTAAAAGTCGTATAAGCCTTTAAATGACAAATCGTCTAAG
Right flanking sequence: Indices 250966 -- 251465
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:250953 original size:36 final size:36
Alignment explanation
Indices: 250897--250979 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
250887 TTAAATGACA
250897 AATCGTCTAAG---GTCTAAGATCGTCTAAGGA-CG-
1 AATCGTCTAAGATCGTCTAAGATCGTCT-AGGATCGT
250929 AATCGTCTAATGATCGTCTAAGATCGTCTAGGATCGT
1 AATCGTCTAA-GATCGTCTAAGATCGTCTAGGATCGT
*
250966 GATCGTCTAAGATC
1 AATCGTCTAAGATC
250980 ATCTGATTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
32 10 0.23
33 1 0.02
35 4 0.09
36 20 0.45
37 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (36 bp):
AATCGTCTAAGATCGTCTAAGATCGTCTAGGATCGT
Left flanking sequence: Indices 250397 -- 250896
CTTCGAAGTGACTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGT
GAAGCCGGATTTACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGAC
CGGGAGGTAGTTTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGC
CTTTAAAAGGCTCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCC
AGAGTGAGTAGCCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTT
TCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAA
TCCCGGATTTCAAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCAC
TTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCCTTTAAATGACA
Right flanking sequence: Indices 250980 -- 251479
ATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCGGACGATTCTCCGTA
GAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATGATGGGCTGCCAGTT
CCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGAATTAGTTAGGCACT
GAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCTGAATGGGCACT
GCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAATTGCCGGTTCGGAT
GATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCAAGAGAAACCAATTC
GGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTAAAGTTCGGAAAGCT
GAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCAC
Found at i:250979 original size:10 final size:10
Alignment explanation
Indices: 250930--250965 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
250920 CTAAGGACGA
250930 ATCGTCTAATG
1 ATCGTCTAA-G
250941 ATCGTCTAAG
1 ATCGTCTAAG
*
250951 ATCGTCTAGG
1 ATCGTCTAAG
250961 ATCGT
1 ATCGT
250966 GATCGTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (10 bp):
ATCGTCTAAG
Left flanking sequence: Indices 250430 -- 250929
GCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCCATTGCTAGTCCCAACCA
ACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCTTTAACTCGAACCGAGTT
AAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGCTCAGCGCTACGCGCTTCACAGC
GCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAGCCACGTCGGTCCGATTCTGGGT
GGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGA
AAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATT
TTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGC
CTTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGA
Right flanking sequence: Indices 250966 -- 251465
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:251271 original size:38 final size:37
Alignment explanation
Indices: 251191--251283 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
251181 TTAAAAGGCT
* *
251191 GAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCT
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
* *
251229 GAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCG
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
*
251267 GAATGGGCAATGATGAT
1 GAATGGGCACTGATGAT
251284 AGAATAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
37 5 0.10
38 44 0.90
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.25
Consensus pattern (37 bp):
GAATGGGCACTGATGATGGGCTGCCGTTCGACGTGCG
Left flanking sequence: Indices 250691 -- 251190
GCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAA
AACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATTT
TTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCC
TTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGAATCGTCTAATGATCGTCTAAG
ATCGTCTAGGATCGTGATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTC
GATCGGTCGACACCGGACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGG
GAGGGAAACATTATGATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTC
CGCAGTTCGGACTGAATTAGTTAGGCACTGAATTTTTAAAAGGCT
Right flanking sequence: Indices 251284 -- 251783
AGAATAATTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACT
GAACGCAAGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACG
GCCTTTAAAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCA
CTTTTTTACGGGTAGGGAAACTACGCTTAGGCCACGAACGAGGCAAAGTCTGGCAGCAGCCAATC
GCCAAGTCCCGAAGACCCGGAGAATCTTTTGGAATCCGCGCCCCGTAGCCCTACATGATGGGGTC
CTCCTCGTAGCCCTCGTAGGCCTCGCGTCAACAAGGCCTCTCCGATTTCTGGACTCAGAAGTGAA
TTCCACTGCGTGCACTTATCACTGCTTCGATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAA
GAACCTTTAATTTTCAATTAATTGAAAATTAAAGTTACTTTGGGG
Found at i:252240 original size:34 final size:34
Alignment explanation
Indices: 252202--252339 Score: 276
Period size: 34 Copynumber: 4.1 Consensus size: 34
252192 TCCCACTCCT
252202 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
252236 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
252270 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
252304 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
252338 CC
1 CC
252340 AGCGTTACTT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 104 1.00
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 251702 -- 252201
GATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAAGAACCTTTAATTTTCAATTAATTGAAAA
TTAAAGTTACTTTGGGGGAGACATTGAAATTCGCGCTACGCGCTTCCCTGGCAAGGGGTGGAACT
ATAGTGCACCCTCGCCCTATTCGAGACTCAAAAATCAATGCAGAGGCTATCTCGACTAAGTAAGA
TCGGGCAATAGATGTAGAAGAAGTCAAGTCCCGGCCTGGGCCAGTGTGGGAGGCCGAACCAAACT
GTAAGCTACCGGCCTTCGCTCGAACCCTTTAAAAGGGCTCGGTAATTTAAAAGGCAGCGCTACGT
GCCTAGACCCGGGCGGATGGAGGGTGGTCTTAGACCCTTTTAAAGGTGCTAGCGTTAAAGTACGA
AACCGAAAATGACTTGTATAGACGGTTCACCAAGGCGTACATGGCTAGCTACCGCGTACTGTGAA
ATTAACTTTCGAAGTGACCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 252340 -- 252839
AGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGG
TGTGAAATTAACTTTCTTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGC
CTTGCGGACTACTCGATGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCC
CGATAGGGGGAGGGGCGACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGG
AAAGCGCTACGCGCACCCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTAC
GCGCGCACCCACTACGTAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAAC
ACGGCAGGTAGGCCCCTACTTTCAGTGCCGATATTCGTTCGATGG
Found at i:252949 original size:24 final size:24
Alignment explanation
Indices: 252921--252969 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
252911 TCGCACTTGA
*
252921 CAGCTTAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
252945 CAGCTCAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
252969 C
1 C
252970 TGTCTCAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.41, G:0.08, T:0.22
Consensus pattern (24 bp):
CAGCTCAACGAACTACTTCCCACT
Left flanking sequence: Indices 252421 -- 252920
AGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGGTGTGAAATTAACTTTC
TTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGCCTTGCGGACTACTCGA
TGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCCCGATAGGGGGAGGGGC
GACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGGAAAGCGCTACGCGCAC
CCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTACGCGCGCACCCACTACG
TAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAACACGGCAGGTAGGCCCC
TACTTTCAGTGCCGATATTCGTTCGATGGCAGTTCGTCCTTACGGCAGGTCCTCTCGTTGTTCGC
TCGCGTAGCGCTAAGCGGTAGCATCTATATACGGCTCGCACTTGA
Right flanking sequence: Indices 252970 -- 253469
TGTCTCAGTCGTTCCCAGTCAGCTGAGCAGTCAGTCTTCCCAGCTTCGGCGTGCCCAACCATTAT
TGGATTCCTCTCTCCGTTCCGTACGAACCACTGACTCCTTACAAAAAGGGGGAGAAGCGGTTTCA
AAAAGGCCGTTGAAAGGGAGAAGAGGAAGGATGTCGAAGCTAATAAGGGATACGTTGGTGCTGAC
ATCGACTCGGTGGGGGACCCATTCCGCTCTCCACCACCAGGACGGGCCACCACCACCTTCTCTGT
TCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAGTACGTGACTTTA
AAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATTGAAAGTACTTTA
ATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATTAAATGAAATTAA
AGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCAC
Found at i:253779 original size:43 final size:43
Alignment explanation
Indices: 253718--253805 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
253708 GCCGTCGCGA
253718 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
253761 AAACC-TAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
253804 AA
1 AA
253806 CCCCACTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (43 bp):
AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 253218 -- 253717
CACCTTCTCTGTTCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAG
TACGTGACTTTAAAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATT
GAAAGTACTTTAATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATT
AAATGAAATTAAAGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCACGTGTGGGA
CTACAGGACCACTGGGTAGGGCCCATCGTATCACGAGTTTGTAGGTGGTGGTGGACATTACTGAC
ATAACAGAGTCGGATCCTCGGCCTATCGGCCTCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCC
TCCAATGAACTCAGCCAGCCTGACTCCTTGATGCGGTGGTCGATATGGCCCAACTCCTCCCTATC
GGTCGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 253806 -- 254305
CCCCACTTTAATTTTCAATGAAATTAAAAAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGC
TCAGGTCGGAGAAACGTCCGCTGGTGGCTAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGC
CCCATAAAGTCCGCACATTAGCCTAATACAGCCCCGGATAAGCGTCCGCACATTAGCCTGATACG
GAGCCGGATAAGCGTCCGCTTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAG
CGTCCGGAGAAGCGACTTTTAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTC
CGGAGAAGCGTCCTCATTGTTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCT
TCCGGAGAAGCGGCCCCGTACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTT
ACGAGCCCTGGCAACGCATGGATTGTCCGTGCATTAGCCGGCAGA
Found at i:253984 original size:35 final size:35
Alignment explanation
Indices: 253944--254019 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
253934 GCCCCATAAA
*
253944 GTCCGCACATTAGCCTAATACAGCCCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
* * *
253979 GTCCGCACATTAGCCTGATACGGAGCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
254014 GTCCGC
1 GTCCGC
254020 TTCCGGCGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (35 bp):
GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
Left flanking sequence: Indices 253444 -- 253943
AAAAATCAACGATGGAAACCTTGCACGTGTGGGACTACAGGACCACTGGGTAGGGCCCATCGTAT
CACGAGTTTGTAGGTGGTGGTGGACATTACTGACATAACAGAGTCGGATCCTCGGCCTATCGGCC
TCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCCTCCAATGAACTCAGCCAGCCTGACTCCTTGA
TGCGGTGGTCGATATGGCCCAACTCCTCCCTATCGGTCGGAGTGGGGGGAGTTGGCCCTTTAAAG
GAGCGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAA
GTAACCTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAA
AAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGCTCAGGTCGGAGAAACGTCCGCTGGTGGC
TAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGCCCCATAAA
Right flanking sequence: Indices 254020 -- 254519
TTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAGCGTCCGGAGAAGCGACTTT
TAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTCCGGAGAAGCGTCCTCATTG
TTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCTTCCGGAGAAGCGGCCCCGT
ACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTTACGAGCCCTGGCAACGCAT
GGATTGTCCGTGCATTAGCCGGCAGACAGAGCCGGAAATCTGTAAACGTACTCTATGGAGAAACG
GCCTCTTGCGGCTAGAAAGGGGGCCTCGATTCCACTCGATGGTTTGGAAAAGGGGCTTTAGCCTG
TCGCCCCTAACCACCACCACCCATAAATGGATGAATGGGTGGTGGCCTTCAAAGGGGCGACAGTA
GGGAAAATGGATTGATGCTCAACCGGGAGAATCCGTAGAATATCG
Found at i:261254 original size:33 final size:33
Alignment explanation
Indices: 261212--261274 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
261202 GCCTTTTTAA
*
261212 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
1 AAGGGTCCGAACGAAGCGAGGACAACTCCGCCG
*
261245 AAGGGTCCGAACGAAGTGAGGACAACTCCG
1 AAGGGTCCGAACGAAGCGAGGACAACTCCG
261275 ACCTACCGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.35, T:0.08
Consensus pattern (33 bp):
AAGGGTCCGAACGAAGCGAGGACAACTCCGCCG
Left flanking sequence: Indices 260712 -- 261211
AGCTGTCAGACACTGTAGCAGCACACGTAACCCCCTGAATTTGACCCTAAGGTTGGGAGAACCCT
CTTTAACGTAATCAATTAAGACCTAATTCGCTCACGAACCGGGAATTTAAGGGCTTCGAAGCAAG
CTTCGTATCTCTCCGCCTCTCGCGAAAAGGCGCGAAGCGGTTGAAGAGTCAAGCACTTATTTCAG
AACTCTCAAGGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGTGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGATAGGGAGGAGT
TGGTCCGATAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGA
GGAGTGGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTA
AAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTTTTTAA
Right flanking sequence: Indices 261275 -- 261774
ACCTACCGGGAGGAGTGGGGGGAGTTGGCAGGGTGGCCCGGCACGGGACACCGCGGGCCCCCCTT
AGGGGGGCCCTGCCCAAACATGCCAGGGGTCGTTTAAATTAAATTAAATTAAAGTGATTTAACCC
GCAAGCAAGGGTGACAACTATCGAAGCGTGGGGCGCCAAAGCAGCGTGGGATGACGACCGGAGGG
CGTACGCACCACCGCCGCAAGAGCGCGGAGCTACAGCAACCTCAAAGGGGGGTCTGAGGGCCGGG
AGCCTTGGCCCCCCAGAAGAATCGACGCGACGGGGGCCTACAGCTAGGCGCCCCCCTACTACGCA
GGGCCTATCGAAACGTGGGGCGCCAAAGCAGCGTGGTGGGGCGTAAGCACCGCCAAAGCTTGAAG
GGGTGACAGTCGAAAAAGCTAGGACTTAGCTAGCCCCCTATAGTGCGGCTTTTTCCTACCCGGCC
CTGGAGTCCCGAGGAAGCGGTGACGAGGAGGTGTCACCACCTGCC
Found at i:264109 original size:27 final size:27
Alignment explanation
Indices: 264079--264131 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
264069 GGAGGCCAAC
264079 CCAACTCCTCCCTTCGGTCGGAGTTGG
1 CCAACTCCTCCCTTCGGTCGGAGTTGG
264106 CCAACTCCTCCCTTCGGTCGGAGTTG
1 CCAACTCCTCCCTTCGGTCGGAGTTG
264132 TCCTCCGGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.11, C:0.38, G:0.25, T:0.26
Consensus pattern (27 bp):
CCAACTCCTCCCTTCGGTCGGAGTTGG
Left flanking sequence: Indices 263579 -- 264078
ACAACGGCATTCACTACGGAAGCGTGAACCACAGCGAATTCAGTGGTTCACTGCCCGCGAATAGC
AGTAATTGAACCCGCCAGATTTATTGCCTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCC
CGCATGTAGGTGGTTGTTCTGGTGTCTAGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTA
AGGCCCAAATCTCCCCACAGCGGCATGTAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTA
CCATTCCCCCAATTGTTGATCCTCTGTTAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTG
GCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACAT
ATTATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGG
CCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAAC
Right flanking sequence: Indices 264132 -- 264631
TCCTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATT
Found at i:264166 original size:36 final size:36
Alignment explanation
Indices: 264106--264230 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 36
264096 TCGGAGTTGG
264106 CCAACTCCTCCCT-TCGGTCGGAGTTGTCCTCCGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
264141 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCT-C---C---GGA
*
264184 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTGCGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
264220 CCAACTCCTCC
1 CCAACTCCTCC
264231 AACTCCTCCC
Statistics
Matches: 81, Mismatches: 1, Indels: 15
0.84 0.01 0.15
Matches are distributed among these distances:
35 13 0.16
36 31 0.38
37 1 0.01
39 1 0.01
40 1 0.01
43 34 0.42
ACGTcount: A:0.14, C:0.39, G:0.22, T:0.25
Consensus pattern (36 bp):
CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
Left flanking sequence: Indices 263606 -- 264105
ACCACAGCGAATTCAGTGGTTCACTGCCCGCGAATAGCAGTAATTGAACCCGCCAGATTTATTGC
CTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCCCGCATGTAGGTGGTTGTTCTGGTGTCT
AGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTAAGGCCCAAATCTCCCCACAGCGGCATG
TAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGT
TAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATC
TCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTA
ATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCC
AGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGG
Right flanking sequence: Indices 264231 -- 264730
AACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCC
TATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTC
CCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGG
GCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGT
TGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCC
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTAT
Found at i:264177 original size:21 final size:22
Alignment explanation
Indices: 264146--264214 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
264136 CCGGACCAAC
264146 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
* ****
264168 TCCT-CCTATCGG-AGGACCAAC
1 TCCTCCCTATCGGTCGGA-GTTG
264189 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
264211 TCCT
1 TCCT
264215 GCGGACCAAC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 3 0.09
21 12 0.35
22 16 0.47
23 3 0.09
ACGTcount: A:0.13, C:0.35, G:0.23, T:0.29
Consensus pattern (22 bp):
TCCTCCCTATCGGTCGGAGTTG
Left flanking sequence: Indices 263646 -- 264145
TAATTGAACCCGCCAGATTTATTGCCTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCCCG
CATGTAGGTGGTTGTTCTGGTGTCTAGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTAAG
GCCCAAATCTCCCCACAGCGGCATGTAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTACC
ATTCCCCCAATTGTTGATCCTCTGTTAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTGGC
TACGTGAGTCGCCTCCAGCCAGATCTCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACATAT
TATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGGCC
ACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGTCGGA
GTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCAAC
Right flanking sequence: Indices 264215 -- 264714
GCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCC
ACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGG
CACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTT
GCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCC
TATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCT
TCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTA
TCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTC
Found at i:264327 original size:9 final size:9
Alignment explanation
Indices: 264309--264362 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
264299 CGGAGGGCCA
264309 ACTCCTCCC
1 ACTCCTCCC
*
264318 ACTCCCCCC
1 ACTCCTCCC
264327 ACTCCTCCC
1 ACTCCTCCC
*
264336 ACTCCCCCC
1 ACTCCTCCC
264345 ACTCCTCCC
1 ACTCCTCCC
264354 ACTCCTCCC
1 ACTCCTCCC
264363 TTCGGTCGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 263809 -- 264308
CGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGTTAACCCCT
AACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGC
CGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTAATTCTAGG
CCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGA
GGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTC
CTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 264363 -- 264862
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGC
CAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTG
CCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCT
ATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
CGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTC
Found at i:264330 original size:18 final size:18
Alignment explanation
Indices: 264309--264358 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
264299 CGGAGGGCCA
264309 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
264327 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
264345 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
264359 TCCCTTCGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 263809 -- 264308
CGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGTTAACCCCT
AACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGC
CGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTAATTCTAGG
CCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGA
GGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTC
CTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 264359 -- 264858
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAG
GGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGA
GGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGA
GTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCC
CTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATC
GGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCA
Found at i:264563 original size:82 final size:82
Alignment explanation
Indices: 264467--265841 Score: 2750
Period size: 82 Copynumber: 16.8 Consensus size: 82
264457 ACCCTATCGG
264467 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264532 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264549 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264614 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264631 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264696 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264713 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264778 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264795 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264860 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264877 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
264942 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
264959 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265024 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265041 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265106 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265123 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265188 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265205 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265270 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265287 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265352 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265369 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265434 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265451 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265516 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265533 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265598 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265615 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265680 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265697 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
265762 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
265779 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
265842 CTTGGGGGCC
Statistics
Matches: 1293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 1293 1.00
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 263967 -- 264466
ATATTATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAG
GGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGT
CGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCAACTCCTCCCTATCGGTCG
GAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTGCGGACCAACTC
CTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCC
CTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGG
Right flanking sequence: Indices 265842 -- 266341
CTTGGGGGCCCCTGGCCTTCCATTGGGTTGGGTTCGGTCGGTTCTGCTTCCCCCTCGATTTGGGG
TTGGCCCGGCGCTCCTTTCATTGGGTTGGCCAACAAACAGTGCTGCAGGCTTTTAAAAGAGCCAA
TCTCTCTTCCAAAAGAAACTCGATTCGAAGTCTTGAAGTAGTCTCCCGGGCCGTTCATTGAATCA
ATTCCCGTTTCTAACGAAAAGCCATCCTAGTAATATTCGTATCCCGAAGTCTTCCGTGACGTTTG
AAATCACGTATATAGATGTCTTCCGGGATTGGTTCCGTAAAATGCCCCTTCCAATGATTCACTCA
CCACAAGGTCGCTAGGTCTCTAGACTATCGTGTAGTCATCCCCGAGCCAAACATTTGGGCGAGGC
CCTACAAAAATAGTGAAGGCACTATAGTGCATCGCGTAGCGCTAGAGAGGTTATCTAAGTGGGCC
GGTACGAGGCATTTACTAGTGGAAGCGCGTAGCGCACTTAATAAG
Found at i:266448 original size:35 final size:35
Alignment explanation
Indices: 266399--266496 Score: 153
Period size: 35 Copynumber: 2.8 Consensus size: 35
266389 TAGGGCCCTC
*
266399 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
* **
266433 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
266468 CGAAGTGAGGACCACTCCGACCGATAGGG
1 CGAAGTGAGGACCACTCCGACCGATAGGG
266497 AGGAGTTGGT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 5 0.09
35 51 0.91
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.10
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
Left flanking sequence: Indices 265899 -- 266398
ATTTGGGGTTGGCCCGGCGCTCCTTTCATTGGGTTGGCCAACAAACAGTGCTGCAGGCTTTTAAA
AGAGCCAATCTCTCTTCCAAAAGAAACTCGATTCGAAGTCTTGAAGTAGTCTCCCGGGCCGTTCA
TTGAATCAATTCCCGTTTCTAACGAAAAGCCATCCTAGTAATATTCGTATCCCGAAGTCTTCCGT
GACGTTTGAAATCACGTATATAGATGTCTTCCGGGATTGGTTCCGTAAAATGCCCCTTCCAATGA
TTCACTCACCACAAGGTCGCTAGGTCTCTAGACTATCGTGTAGTCATCCCCGAGCCAAACATTTG
GGCGAGGCCCTACAAAAATAGTGAAGGCACTATAGTGCATCGCGTAGCGCTAGAGAGGTTATCTA
AGTGGGCCGGTACGAGGCATTTACTAGTGGAAGCGCGTAGCGCACTTAATAAGTGGTGCAGGCAT
ACGACGCTCCTATTTGCCCCCCCGTAAATCACCACTAGGGCCCTC
Right flanking sequence: Indices 266497 -- 266996
AGGAGTTGGTCCGAAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCTCCGGATCGGCTAAT
TGTTAAATGATACTAGATGGCCGCAGCTCACAACGTGAAATCGGTGAACACAACAGAGCTACAGC
CGCCCTAGGTTCAAATCCGATGATAGGGTAGCATACTCGCTTGGTGGAATTGGGCACGACAGACT
CAACAAAATCTGCATTGTGCGGTCGGTTCAGATCCGATAGCGGGTATGGACGTGTATAGATCTAC
AAGAGGTCTTTCTAGAAGGTTTAAAATACATGACTTTAACGCCTTGAAAGTGGGCCTTTAGGGCG
AGTATAACTTAATAGGTTAGAGTGTCGGATTGTGAATTCGAAAACACGGGTTCGAATCCCGTTAT
TCGCCTTAGCGCGCGCATTTTACCTCATCATCCATGTACGCGTCGAATGACCACTCCCTGTGGCG
CTGCTATCCCTCTTCCTTATGGCGCCTGGATCCGCTTATGGTGTG
Found at i:267834 original size:35 final size:35
Alignment explanation
Indices: 267788--267856 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
267778 CCGGCCGCTG
267788 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
267823 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
267857 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 267288 -- 267787
TTAATTGAAAATTAAAGTACTCGATTAATTGAAATTAATTGAACCCGACGCTTTCGATTTCCCGC
ATCGTGACTGGGCTTAAGAAAGGGAAGGACCTCAAAGTCTGTAGCCAACTCCCCCCACTCCTCCC
GGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCGGTGGGTCGGAGTTGGCAGGGTGCCACAAA
AGGTTAGCCTGGCAGGCTAGGCTTGCCTGGCCCGGCACTTCAAAGGGGAGATCCGGGTCTACCCT
GCATTCCTTGCCGGGGTTTCCTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTGTGCCTGGCAGG
GTTCGGCCCCCGGGGGTTTAAAGTAGCGCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCGC
TATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGGTCCCCCAACTCCTC
CCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTG
Right flanking sequence: Indices 267857 -- 268356
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTT
CGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGG
ACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCCACTCCC
CCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTC
GGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACA
Found at i:268070 original size:64 final size:64
Alignment explanation
Indices: 267969--268111 Score: 277
Period size: 64 Copynumber: 2.2 Consensus size: 64
267959 TCCTCCCTTC
*
267969 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
268033 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
268097 GGTCGGAGTTGTCCT
1 GGTCGGAGTTGTCCT
268112 ATCGGACCCA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 78 1.00
ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25
Consensus pattern (64 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 267469 -- 267968
CAGGGTGCCACAAAAGGTTAGCCTGGCAGGCTAGGCTTGCCTGGCCCGGCACTTCAAAGGGGAGA
TCCGGGTCTACCCTGCATTCCTTGCCGGGGTTTCCTCCAACTCCTCCCTATCGGTCGGAGTTGCC
CTGTGCCTGGCAGGGTTCGGCCCCCGGGGGTTTAAAGTAGCGCCCCCCACTCCTCCCGGTAGGTC
GGAGTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGG
TCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTA
CTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGA
TTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCG
CGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTC
Right flanking sequence: Indices 268112 -- 268611
ATCGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCCA
CTCCCCCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGT
CCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACACAGGTACACCGGCTC
TACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTATGGGGACCTAGGTCTAGATACG
TGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCTATAGGCGATGAGGTCGCGTCC
GCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCAACGTATTCTCTCTCCCGGAAA
GACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAGC
Found at i:268185 original size:9 final size:9
Alignment explanation
Indices: 268167--268220 Score: 83
Period size: 9 Copynumber: 6.0 Consensus size: 9
268157 CGGAGGACCA
268167 ACTCCTCCC
1 ACTCCTCCC
*
268176 ACTCCCCCC
1 ACTCCTCCC
268185 ACTCC-CCC
1 ACTCCTCCC
268193 AACTCCTCCC
1 -ACTCCTCCC
268203 ACTCCTCCC
1 ACTCCTCCC
268212 ACTCCTCCC
1 ACTCCTCCC
268221 GGTAGGTCGG
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
8 3 0.07
9 36 0.86
10 3 0.07
ACGTcount: A:0.13, C:0.69, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 267667 -- 268166
GTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGGTCC
CCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTACTT
TAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGATTA
ACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCGCGA
CGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
CGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGACCCA
CTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 268221 -- 268720
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTA
GGTACACAGGTACACCGGCTCTACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTAT
GGGGACCTAGGTCTAGATACGTGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCT
ATAGGCGATGAGGTCGCGTCCGCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCA
ACGTATTCTCTCTCCCGGAAAGACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAG
CGGTAGAATACATGACTTTAAAGTAACGATCCACGCACAATGGTGGGCCAGGAAAACGCGCATAG
CGAGCTGGCCTACTGATCGAAAGTTCTATCTGAGGGGGGAAGCGC
Found at i:268194 original size:27 final size:27
Alignment explanation
Indices: 268164--268216 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
268154 TGTCGGAGGA
268164 CCAACTCCTCCCACTCCCCCCACTCCC
1 CCAACTCCTCCCACTCCCCCCACTCCC
*
268191 CCAACTCCTCCCACTCCTCCCACTCC
1 CCAACTCCTCCCACTCCCCCCACTCC
268217 TCCCGGTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.15, C:0.68, G:0.00, T:0.17
Consensus pattern (27 bp):
CCAACTCCTCCCACTCCCCCCACTCCC
Left flanking sequence: Indices 267664 -- 268163
GGAGTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGG
TCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTA
CTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGA
TTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCG
CGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGAC
CCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGA
Right flanking sequence: Indices 268217 -- 268716
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATT
CCTAGGTACACAGGTACACCGGCTCTACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCT
CTATGGGGACCTAGGTCTAGATACGTGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAG
GGCTATAGGCGATGAGGTCGCGTCCGCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCA
TCCAACGTATTCTCTCTCCCGGAAAGACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAG
CGAGCGGTAGAATACATGACTTTAAAGTAACGATCCACGCACAATGGTGGGCCAGGAAAACGCGC
ATAGCGAGCTGGCCTACTGATCGAAAGTTCTATCTGAGGGGGGAA
Found at i:268257 original size:35 final size:35
Alignment explanation
Indices: 268218--268309 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
268208 TCCCACTCCT
268218 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
268253 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
268288 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
268310 TCGGACCCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 267718 -- 268217
AATATTTGTGGTCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGC
CGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTG
AAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGA
GCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTG
TCCTATCGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCT
CCCACTCCCCCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 268310 -- 268809
TCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACACAGGTACACCGGCTCTAC
TTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTATGGGGACCTAGGTCTAGATACGTGT
ACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCTATAGGCGATGAGGTCGCGTCCGCT
TTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCAACGTATTCTCTCTCCCGGAAAGAC
CCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAGCGGTAGAATACATGACTTTAAAGT
AACGATCCACGCACAATGGTGGGCCAGGAAAACGCGCATAGCGAGCTGGCCTACTGATCGAAAGT
TCTATCTGAGGGGGGAAGCGCTCCGAAGGAGCGGGAGAGTGCGAAGCACTCGATACCTCCTACAG
ACCACTCTCCCATTGCGAGGGTGAAACGCGAACTTTTCCCTTCGA
Found at i:269606 original size:35 final size:35
Alignment explanation
Indices: 269560--269644 Score: 170
Period size: 35 Copynumber: 2.4 Consensus size: 35
269550 TCCTCCCTTC
269560 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
269595 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
269630 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
269645 ACGGACCCTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.11, C:0.27, G:0.36, T:0.26
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 269060 -- 269559
TCACAGCACCAAGCTCGAAGAGTGGCACCTTCGCCTAGCCTGAAGGGGTATGGTAAATCCATGCT
TCTGTATGGTCAATCCGGTTTCCACGCTTCTGTATGGTCAATCCAGTGGTATGGTGAATCCAAGC
CCTTTAAAGTGGTTTCGGGGTAAATCCATTCCGGTGGAGCATTAGTAAATCCACCTTAGCCGGCG
CAGTATGTAGTAATTCAATCTGGTAATCCGCCTATCGAAGATATTAAATCTACACGAGTAGGTGG
TTCGTCCCCTCTACCTGGCAAGGGTAAACCTCCACCGTAGGCACTGTGGCCAATTAATTGAAAAT
ATTTTGCCCCGAACGACTTTAAAGTAGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAAC
GCTTTATTTATTGAAAAGGAGGAGTTGAAAATTCATTGAATTTCATTGAATTTAATGCGCGCGAA
TTCGAATGGATTCTGTTAACTCCAACTCCCCCAACTCCTCCCTTC
Right flanking sequence: Indices 269645 -- 270144
ACGGACCCTAGGTGTGTGCCTTCCCCAGTGGTTGGAAGTACCCAAACCAGTGAGTGGGTGACCCG
AACCCGAAGTAGTGGGTGCAGGGGGCCGCTTTAAAGGGCCCCCTGTGCCCTACCTTACAGTGAAG
AAGCCCTTCCACCTTGGCTTGGGTGACTGCCCTTTCAAGCTAAACCTTCTGCCCGGCCCAGTACG
CTTTCCTTTTTATCGGCCCCCGTCGCCACTTGGCCCTCCCGCCGGCAGGCGGTCCCTTTCGCGCC
TCCTCAACCTCTGAATCAACTGGCCGGGTAGCCAACAGATTCAACCCATGGTATGATTGGGTGTA
ACCCAGACAATTGGGTGGATTTGGCTCTATCGTCTCATTTTTTATCCATACGATTGGATTGGGTG
GTCCCGGCTGATTGGGTGCCCAATATTGGGATTCAAATGCCGGGGCTCAGGATTGGTTGTTTTGC
CCCCACAGAATTGGGCAAGTTCCCCTCCATTCAAGAAGGTTTTTG
Found at i:270582 original size:23 final size:23
Alignment explanation
Indices: 270552--270598 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
270542 AGTTTAAAGT
270552 CCTTCCTAAAGTCATGTATTTTA
1 CCTTCCTAAAGTCATGTATTTTA
270575 CCTTCCTAAAGTCATGTATTTTA
1 CCTTCCTAAAGTCATGTATTTTA
270598 C
1 C
270599 TTTCAACTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (23 bp):
CCTTCCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 270052 -- 270551
GCCCAATATTGGGATTCAAATGCCGGGGCTCAGGATTGGTTGTTTTGCCCCCACAGAATTGGGCA
AGTTCCCCTCCATTCAAGAAGGTTTTTGCACCCATAATTCCACCCACAGCAGGTTCGCACCCTCT
TGAATGGGAGGGAACCCGCTGTGGGAGGAACTAGAGGCTGCGCTTCAGTTTTTACTAAGACGAAT
TTGAGGCCTCTACGTTAATGTTTGGCCAAACAACTTCTTCCTTTTAAAAGGCCGGTATAAGTTAC
TTTAATCTTAAATTAAATTAAATTAAAGTAACCCATTAATTTCAATGAATTTAATTAATTTAATT
CTTCATCAATTCGAACTTTTAAAGGGACGAAATGAATTTCATTGAATTTTTCATTCTTCGAAATT
AATTGAATTTGACTTCACTTCCTTCCTTCTAGAAATGCTTCATTAATTGAATTTAATTTAACTTG
AAGCTCCTTGAAGTTAAATTAAATTCAATTAATGAAGTTTAAAGT
Right flanking sequence: Indices 270599 -- 271098
TTTCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGCCCTCCTATCGGAGGGCCCTAAAGCGTTTGAGAATTTCAATGAATTTCATTGAATTTA
GCTTCATGGCCATTTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTT
TCGAAATGACTGGTGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATAC
GTGTCTCGAGTTCGAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGC
GTTTTTCTTGTACGTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCG
AAAGAGGCACAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAG
GGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCC
Found at i:270968 original size:19 final size:18
Alignment explanation
Indices: 270944--270980 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
270934 TACGTTGTCC
270944 GTGTTTCTCGTACGTTCGA
1 GTGTTTCTCGTAC-TTCGA
270963 GTGTTTCTCGTACTTCGA
1 GTGTTTCTCGTACTTCGA
270981 ACCGGTCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.43
Consensus pattern (18 bp):
GTGTTTCTCGTACTTCGA
Left flanking sequence: Indices 270444 -- 270943
TTGAATTTGACTTCACTTCCTTCCTTCTAGAAATGCTTCATTAATTGAATTTAATTTAACTTGAA
GCTCCTTGAAGTTAAATTAAATTCAATTAATGAAGTTTAAAGTCCTTCCTAAAGTCATGTATTTT
ACCTTCCTAAAGTCATGTATTTTACTTTCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAAAGCGTTTGAGA
ATTTCAATGAATTTCATTGAATTTAGCTTCATGGCCATTTTTGAGGAAAGAAAGGGCGCTTCGCC
GCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGGTGGTGGCTCAGGCCTCTGATCGACGAT
GGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTCGAATACGGGTTTCTCGTACGCCGGAAG
AATCGGATATTGATTCTATATACGCGTTTTTCTTGTACGTTGTCC
Right flanking sequence: Indices 270981 -- 271480
ACCGGTCGAAAGAGGCACAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAA
TTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGAT
AGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTT
ACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGA
GCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCC
Found at i:271157 original size:35 final size:35
Alignment explanation
Indices: 271113--271240 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
271103 CCTCCGATAG
* * **
271113 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
271148 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
271183 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
271218 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
271241 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 270613 -- 271112
ACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCT
ATCGGAGGGCCCTAAAGCGTTTGAGAATTTCAATGAATTTCATTGAATTTAGCTTCATGGCCATT
TTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGGT
GGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTCG
AATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTTGTACG
TTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCACAGTA
GTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 271241 -- 271740
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTT
ACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGA
GCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCCTGCTCCTCTAG
AAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCAAATATCGTAGT
CCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAAACACTTTTAAA
GGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGG
CAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGAC
Found at i:271250 original size:9 final size:9
Alignment explanation
Indices: 271238--271294 Score: 96
Period size: 9 Copynumber: 6.3 Consensus size: 9
271228 CCGACCTACC
271238 GGGAGGAGT
1 GGGAGGAGT
271247 GGGAGGAGT
1 GGGAGGAGT
*
271256 GGGGGGAGT
1 GGGAGGAGT
271265 GGGAGGAGT
1 GGGAGGAGT
*
271274 GGGGGGAGT
1 GGGAGGAGT
271283 GGGAGGAGT
1 GGGAGGAGT
271292 GGG
1 GGG
271295 CTCTCTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.18, C:0.00, G:0.72, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 270738 -- 271237
CCATTTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGA
CTGGTGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGA
GTTCGAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTT
GTACGTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCA
CAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGG
GCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 271295 -- 271794
CTCTCTTTCTTACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTT
CTAGGGTCCGAGCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGG
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCC
TGCTCCTCTAGAAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCA
AATATCGTAGTCCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAA
ACACTTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGA
Found at i:271265 original size:18 final size:18
Alignment explanation
Indices: 271242--271294 Score: 106
Period size: 18 Copynumber: 2.9 Consensus size: 18
271232 CCTACCGGGA
271242 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
271260 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
271278 GGAGTGGGAGGAGTGGG
1 GGAGTGGGAGGAGTGGG
271295 CTCTCTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.17, C:0.00, G:0.72, T:0.11
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 270742 -- 271241
TTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGG
TGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTC
GAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTTGTAC
GTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCACAGT
AGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGGGCGC
TACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 271295 -- 271794
CTCTCTTTCTTACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTT
CTAGGGTCCGAGCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGG
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCC
TGCTCCTCTAGAAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCA
AATATCGTAGTCCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAA
ACACTTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGA
Found at i:271753 original size:34 final size:34
Alignment explanation
Indices: 271691--271781 Score: 155
Period size: 34 Copynumber: 2.6 Consensus size: 34
271681 CCTCCGATAG
*
271691 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGA-AGGGTCCGAACGAAGT
*
271726 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
271760 GAGGACAACTCCGACCGAAGGG
1 GAGGACAACTCCGACCGAAGGG
271782 AGGAGTTGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 37 0.70
35 16 0.30
ACGTcount: A:0.30, C:0.27, G:0.34, T:0.09
Consensus pattern (34 bp):
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 271191 -- 271690
CTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTTACTTTTAACGAACCT
TTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGAGCGACGCGCCTTAAA
TTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCCTGCTCCTCTAGAAGTGAAGCGGGCAG
TTCCATATCATAATCCGCTAGATCATCAACCAGCATGCAAATATCGTAGTCCCCTCGCCACCTTG
CCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAAACACTTTTAAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 271782 -- 272281
AGGAGTTGGAGGAGTTGGTCCGAAGGACAACTCCGACCGCGGGGAGGAGGGCCGCTTTAATTTTC
AATGAAATTAAATTAAAGTAACTTTACGCTGATAAAATTAGTTCTATCAACAAAGTTGTTTCCCA
GAATTAGCACGTTTCCGTATGGTGCCAGTACAACTCAATCCTCTATACATCATGCGTAGAGCATG
CATAAGCCAATAGGATTCTTCACTCCCCCTTTCGAGCACTGAGCGGCTGAACCCAACCCAATGAC
CGGTGGTCCGCACCAGACTTGTCATCAGGGGAGACCCGATGGTGGTGATGCGCAGCCTTCCTAGT
ATCAATTTGCATAGCCTAGCAAGCAGGCTATTTGGTATACGTTGCATGCATGGCCAGCCGCTAGT
TGCTACGGATGCACCGATAGCTACCCGCTGGCCTAACCGATAGCTACCCTAATACTAGTTGTTGT
TTCGTATTGGCTTTCCGGGGGAAGCGCTTACGCATCCGTATGGAT
Found at i:272356 original size:46 final size:45
Alignment explanation
Indices: 272297--272396 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 45
272287 CGGATGGCTT
* *
272297 TGGTGCGCTAACGCCGTAGCATCCAT-ATGGATGCTATGGTTGGCGA
1 TGGTGTGCTAACGCCGTAGCAT--ATGATGGAGGCTATGGTTGGCGA
*
272343 TGGTGTGCTAACGCCGTAGCATATGGATGGAGGCTATGGTTGGCGG
1 TGGTGTGCTAACGCCGTAGCATAT-GATGGAGGCTATGGTTGGCGA
272389 TGGTGTGC
1 TGGTGTGC
272397 GATAGCAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 2 0.04
46 47 0.96
ACGTcount: A:0.17, C:0.18, G:0.38, T:0.27
Consensus pattern (45 bp):
TGGTGTGCTAACGCCGTAGCATATGATGGAGGCTATGGTTGGCGA
Left flanking sequence: Indices 271797 -- 272296
TGGTCCGAAGGACAACTCCGACCGCGGGGAGGAGGGCCGCTTTAATTTTCAATGAAATTAAATTA
AAGTAACTTTACGCTGATAAAATTAGTTCTATCAACAAAGTTGTTTCCCAGAATTAGCACGTTTC
CGTATGGTGCCAGTACAACTCAATCCTCTATACATCATGCGTAGAGCATGCATAAGCCAATAGGA
TTCTTCACTCCCCCTTTCGAGCACTGAGCGGCTGAACCCAACCCAATGACCGGTGGTCCGCACCA
GACTTGTCATCAGGGGAGACCCGATGGTGGTGATGCGCAGCCTTCCTAGTATCAATTTGCATAGC
CTAGCAAGCAGGCTATTTGGTATACGTTGCATGCATGGCCAGCCGCTAGTTGCTACGGATGCACC
GATAGCTACCCGCTGGCCTAACCGATAGCTACCCTAATACTAGTTGTTGTTTCGTATTGGCTTTC
CGGGGGAAGCGCTTACGCATCCGTATGGATTGGCTCGGATGGCTT
Right flanking sequence: Indices 272397 -- 272896
GATAGCAGCCTAAGTCGAAGCAGTGGCGTGTTCATGCTATGCTCTAGAGGCTGCATTCGCCCGGA
TGATGGCACACGACTAGCGATGACCAACCGAGCCGTAGCCTCCATATATATGGATTGGCTATCGG
ATGGCGATGGCGCGCTAGCGCTGAAGCATCCATATGGATTGGCTCGGTTTGGGCGATGGTGTGCT
AGCGCCGGCAGCCTATGGATGGATTGGTGCTATAGCGATGGTGTGCTAGCGCCTAATACTATGTG
TGCATTGGCTTATGGCCGCCAGGTTAGCATACGACCGGCAACAGCCGGGTTTCGATACAGTAGCG
GTTGAAGCTACTGAACACCTTATAGACAGACTCTACCACTTGTTATACGTGGCATGCATGTCCAG
CCGCGAGTCGAATACCAGTGCCATTGGTTATTCGCGTCACTCACTGGCGGATTAGTTGCTAATAC
TGCATTCAACGTTGGTTTGGTGGACTGGCTATGGGCATAATAAGA
Found at i:276462 original size:64 final size:64
Alignment explanation
Indices: 276394--276558 Score: 321
Period size: 64 Copynumber: 2.6 Consensus size: 64
276384 CCTCCCGGTA
276394 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
276458 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
276522 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
276559 TCGGAGTGGT
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 96 0.96
65 4 0.04
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 275894 -- 276393
CCACCACCACCTACAAAGTGGGTGGGGTTTAAAGGAGTTGGGCTTGCCTAAGCTCCCTACCCACC
ACCACCCATAAAGCGGGTGGGGTTTAAAGGAGCTTGGCGCTAGCTGAGCCGAACTAAAATGCGCT
CCCGTTCTTCCCGAAATATGCGAGTTCCAGATTTTATTGCCTACCCAGTTAGATATGTAGTCCCT
TCCGGGATTCGGTTGAGACCGCCGCATTATGGACTTAGTAGTTCCGGAATTTGCTGTCATATTTG
GATAGCCGCCCTGTTTTGCCGAGCCGGCTATTCCGATTACAAAGTCGTCCGCGTGGACCCCTTGC
TGGGGCCAGGGTAGCGCGTAGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTACCCCAGCG
ACGTGGCTAAAGCCAACTCCTCCCTTCGGTCGGAGTGGTCCTATCGGACCAACTCCTCCCTATCG
GAATTCGGAGTTTCGGAGGACCAACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 276559 -- 277058
TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTA
CAGGAGTAGGAGAAAACGCGCGCGGAGCAGCTTCGGGGCCCCCCCCCACAATAAGGGGTGGGGGG
CGAAGAGAGAAAACGCGCTGTTTTCGGTAATTTAATTGAATTGAATTGAATTGAATTTAGCTTCC
CGCCTCCGGTTCACCGAGGGGTCCATTGGGTCTTGGGAAGGCAAGCTTCTCACAGTCTTCGGGTG
CAGAGCGCCCTTTGATACAATCTGGGGGGGCTCTATTAACCAGGGGGGTTAAAACACGGTTGGAG
CGGGTTTGATAATCATCCCCCATGTACTTGTCCAGAACCCTTTTGATAGAAAGGGCGGGTACACA
GTTACAGTCTCGAGGGGAGTTTTGAAAACTTGGCCTTTAAAGGCTACTTTTAGCAAATTAATTGA
AAATTAATTGACGCTTGGGGAGTGCCTACCTTCGATAGTTTATTG
Found at i:278400 original size:34 final size:34
Alignment explanation
Indices: 278339--278456 Score: 227
Period size: 34 Copynumber: 3.4 Consensus size: 34
278329 AAAAGTCCGA
278339 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
278374 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
278408 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
278442 AGGACCACTCCGACC
1 AGGACCACTCCGACC
278457 CTCTCCCTAT
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
34 66 0.80
35 17 0.20
ACGTcount: A:0.29, C:0.31, G:0.31, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 277839 -- 278338
ACAAAGGGCTTCAGCCCTTGCCGTCCCCATCACCACCTACAAAGTGGGTGGTGGGGACGGCAAGG
GGTGGGGGGCCTCCGGCCCCCCCCGGGCCCTTCCGGGCCAGCCTCGGCCGGCAGGCCCTTTAGTA
GCCCCCACCACCATCTCTGAAGTGTTAATTTAATTGAAAATTAAGTTACTTTACGGCCCGCAGCA
AGAGAACTTTAAAGTAGCGTTTTCGCAATCAAACGCACGGCGCGCTGTATAGAGTTTTGCCCTTG
CGAAAACTAGCTGCTTCGGGTTCAGCGCGCTGAACCCTTTTAAAAGTAGCGTTTGATTGCTAAGC
GCTGTTTTGGCTAGCGCGAAGGCCGGCCTTGCGAAGAAAACTAGCTTCTTGCCCAGCACTAATGT
GCCCCCAGGGCAAATATGAATGCCCGGAGCTTTAAAATTAATTGAATTTAAGAGTTTGGAACTAA
CTGTCCCGAGAAAACTAAAGCGTTTCAGGGCTTTTAAAAGTCCGA
Right flanking sequence: Indices 278457 -- 278956
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGCCAACTCCGGCCGATAGGGAGGAGTTGGTCCGACCGCTTTAA
AAGGGGTCCGAGGCACTTAAAGGGAGAAATGGAGAAATTTCAAGGAAATTAAATTAAAGTAACGC
CGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGA
GGCGAGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTA
TCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGGGACCACAAATAATTCCTA
GGGAGGACTTTTAAAGGCACTTAAGGTAATTTTCTTGACTTAAGAGGTCGCCGGGCGTTTTTCCA
GTTAATGGCCCAACAGGGAAGGGCCAAAATATGGGCGTTTTGGGG
Found at i:279990 original size:43 final size:43
Alignment explanation
Indices: 279880--280001 Score: 169
Period size: 43 Copynumber: 2.8 Consensus size: 43
279870 CTAACCACAG
279880 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
1 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
* * *
279923 GGCACTGCC---AGGTCAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGCCCT-CCGATAGG--AGGGCCACTCCGACCGATAGGGAGGAGTT
279966 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGG
1 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGG
280002 TCCGAACGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
41 3 0.04
42 2 0.03
43 57 0.85
44 2 0.03
45 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.36, T:0.13
Consensus pattern (43 bp):
GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
Left flanking sequence: Indices 279380 -- 279879
ACTGGGACGGGAGTGTCCGGCAAGCTCGTTCTGGGGGGACTAACGCGTTTTCCACCACGATTGTG
GTTCTTCCGCTTCGCGCCCCAACTCCCTACCCACCCACTTTGTAGGTGGTGGTGGGGTTTAAAGG
AGTTGGGCTGCCGCCCCCTTGAACGCAGTACATTGGGATCCTGATGCACTACTACGAACGTTACC
GCGAACCGCCTGCGGTGAGGCCACATTAGTGCGCTACGCGCCGGTACCTGCTGGAAAGCGCGTAG
CGCTAATTCCAGAGCTAAGTGCACCCCTTGAAAGAAAAAGGTGCCAACCGCAAGTGTCGGCTTGG
TTATCCTCATTAAGCCACCTACTGTCTAGCTCCCGGACACTTATTTCCGAAGGTAGAATAAAGCG
CTTTGCGCTTTCTGCTCCACCCTCTTCTCATGCCGGCCCACCCAATGCTTTTCCACGTATCCTTC
CGCGCCGGGATACGCTACCTCGGGATGCTTTACTCCTAACCACAG
Right flanking sequence: Indices 280002 -- 280501
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCGAC
AGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGTGGCGGGAGGAGTTGGGGGAGTTGGTTCCAAGACGGAGCTTA
ACCTGGGTCTCGGTCAAGAACGGCGATCTACGTTTCACACGGCGCACGATTCCATGGATCGTTTC
ATTTGAGATCGTGATGGAGGACATGGCTTACGATCATCAGCTTTAATCATGCCACTAGGCATTTG
ATTAGGGCATTGCACAATGATTCGAAGACTTTGCCGCATCTCTTC
Found at i:280023 original size:35 final size:34
Alignment explanation
Indices: 279979--280104 Score: 207
Period size: 35 Copynumber: 3.6 Consensus size: 34
279969 CCTCCGATAG
*
279979 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
* *
280014 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
280049 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
280083 GAGGACCACTCCGACCGAAGGG
1 GAGGACCACTCCGACCGAAGGG
280105 AGGAGTTGGA
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
34 37 0.44
35 48 0.56
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.10
Consensus pattern (34 bp):
GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 279479 -- 279978
CCACTTTGTAGGTGGTGGTGGGGTTTAAAGGAGTTGGGCTGCCGCCCCCTTGAACGCAGTACATT
GGGATCCTGATGCACTACTACGAACGTTACCGCGAACCGCCTGCGGTGAGGCCACATTAGTGCGC
TACGCGCCGGTACCTGCTGGAAAGCGCGTAGCGCTAATTCCAGAGCTAAGTGCACCCCTTGAAAG
AAAAAGGTGCCAACCGCAAGTGTCGGCTTGGTTATCCTCATTAAGCCACCTACTGTCTAGCTCCC
GGACACTTATTTCCGAAGGTAGAATAAAGCGCTTTGCGCTTTCTGCTCCACCCTCTTCTCATGCC
GGCCCACCCAATGCTTTTCCACGTATCCTTCCGCGCCGGGATACGCTACCTCGGGATGCTTTACT
CCTAACCACAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAG
GTCAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAG
Right flanking sequence: Indices 280105 -- 280604
AGGAGTTGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTGGGT
CCGATAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGA
AGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGTGGCGGGAGGAGTTG
GGGGAGTTGGTTCCAAGACGGAGCTTAACCTGGGTCTCGGTCAAGAACGGCGATCTACGTTTCAC
ACGGCGCACGATTCCATGGATCGTTTCATTTGAGATCGTGATGGAGGACATGGCTTACGATCATC
AGCTTTAATCATGCCACTAGGCATTTGATTAGGGCATTGCACAATGATTCGAAGACTTTGCCGCA
TCTCTTCGATGCGAATACAATAACGATCATAGCAATCTCCTCTGGTACCTACTGGTACGTCAGAA
TCCGATTGGTCATGAACATCGTAAGGTGCTGCTTTCCGCGAATCC
Found at i:285534 original size:9 final size:9
Alignment explanation
Indices: 285520--285557 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
285510 TGGGGCCAAA
285520 CCAACTCCT
1 CCAACTCCT
285529 CCAACTCCT
1 CCAACTCCT
285538 CCAACTCCT
1 CCAACTCCT
285547 CCAACTCCT
1 CCAACTCCT
285556 CC
1 CC
285558 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 285020 -- 285519
CATTTCATTTGGGCCTCCTTCACCTTTCCCCGCAGTGGAAGCGCTACGCGCAATCGAAGGCATCT
ATCTACGTGTGTGAATGGGAAATCGAGAATCCCAAAAAACCTTTTTTCTGGAATTAGTAATGAAT
CAGATATACCAGTGACAGCTGCTACTCCGGCATAGGATTCTGAGGCAGTAGATTGATTCGGAAAG
GGAGGGTTTCATGACCCAAACTCTCTCCCGGCGGACGAGTGCTTCTCAACAAAACCGTCACTCGC
TGGGGTGGTAGTGTGGCGGGTGAAGCATGTAGAGGCTTTGGTACAAGTATCACATATGCTGCATA
GTTGCTAGGGTGCATAGGGGAAGGACACTCAACAGAGAGAGGGATCCTGAAGGTACGGAGACGCG
AGGACCTTAGTACCCAGGCCGAGGGATGATATCGTCACATAGCGGGATCCTTATGAAACCCCTTC
GATGGGGCCGCCTACCGAAACCTACCTCCTTTCGATGGGGCCAAA
Right flanking sequence: Indices 285558 -- 286057
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCG
CGTAGCGCCCCCCTGCCCTTTTGAAACCTACCTTCTTTCCTAACAGACTCCATCCTCAATGGTAA
CCGTTGACGAACCACCAGAAGAACGCTCGATAGGAAAGGGTAGTGGGAACAAAAAGACTAAAGGC
CATTCTGCTTTTAGTAAACTAACCTATCATTGGTCGTTTAGTACGAGATCGCTTCACACCTCTTT
AAAAGGGTTTTCCGCGAGTATAGTAGGGGCTTTCATCACAGCCGAAGGCTGTCTATGCAGAGTGA
ATCCGACCTTCAGGGTCGCGTAGCATAAGCTACCGATTAATAACG
Found at i:285674 original size:34 final size:35
Alignment explanation
Indices: 285626--285703 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 35
285616 ATAGGGAGAG
*
285626 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
285660 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
285695 GGTCGGAGT
1 GGTCGGAGT
285704 TGCCCTCCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 31 0.74
35 11 0.26
ACGTcount: A:0.10, C:0.29, G:0.31, T:0.29
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 285126 -- 285625
TTTTTTCTGGAATTAGTAATGAATCAGATATACCAGTGACAGCTGCTACTCCGGCATAGGATTCT
GAGGCAGTAGATTGATTCGGAAAGGGAGGGTTTCATGACCCAAACTCTCTCCCGGCGGACGAGTG
CTTCTCAACAAAACCGTCACTCGCTGGGGTGGTAGTGTGGCGGGTGAAGCATGTAGAGGCTTTGG
TACAAGTATCACATATGCTGCATAGTTGCTAGGGTGCATAGGGGAAGGACACTCAACAGAGAGAG
GGATCCTGAAGGTACGGAGACGCGAGGACCTTAGTACCCAGGCCGAGGGATGATATCGTCACATA
GCGGGATCCTTATGAAACCCCTTCGATGGGGCCGCCTACCGAAACCTACCTCCTTTCGATGGGGC
CAAACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 285704 -- 286203
TGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGC
CCTTTTGAAACCTACCTTCTTTCCTAACAGACTCCATCCTCAATGGTAACCGTTGACGAACCACC
AGAAGAACGCTCGATAGGAAAGGGTAGTGGGAACAAAAAGACTAAAGGCCATTCTGCTTTTAGTA
AACTAACCTATCATTGGTCGTTTAGTACGAGATCGCTTCACACCTCTTTAAAAGGGTTTTCCGCG
AGTATAGTAGGGGCTTTCATCACAGCCGAAGGCTGTCTATGCAGAGTGAATCCGACCTTCAGGGT
CGCGTAGCATAAGCTACCGATTAATAACGCTCCCGGAGCATTCGTTTGCTACAACCCTTCCAAAC
CCAGTACCTTCGGGAAAAGATGGCCACTAATTTTCAATTAATTTAAACGCTCTTTTAATTAATGA
AAAGTACTTTAATTTAATTTCATTGAAAATTAAAGTAACAACACT
Found at i:286729 original size:21 final size:21
Alignment explanation
Indices: 286703--286786 Score: 168
Period size: 21 Copynumber: 4.0 Consensus size: 21
286693 GTTAAATCCA
286703 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
286724 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
286745 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
286766 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
286787 CGTCCGGAGG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (21 bp):
ATGAAATTCTTGAAAGTCCGG
Left flanking sequence: Indices 286203 -- 286702
TTTAATCTAATTTCATTGAAAATTAAAGTATCTTGCGCTCCCGATAAGACCCGCTGCGCCTCGGC
TACCAGATCCAGATCCTGCAGCCTGGCGTTAGCCCAGATCCAGTAGCCGCCCCATGTACATGTTG
TATGCAAGCGGGTGTAGAGATCGCCTTAGCCTACCTTAACGAATTGTCCGGTTAGTTGGGTTCCG
GGTTCCGTGGGTCATTGGGACAACCCCGCAAAACGCCGGGAAATGGATAGAATTCAGGGCTATTT
CTGGAGCATTCTCCGACCCTTCCCTTCTGCTCGAAGCTTCGCGGAAAAAAAGCCAAAACAATTCT
ATTTACTGAAATCCCAGTAGTAACGGAACTGAAAGTGATTCTGTGTAGTGTTAGGGAATTCTTTC
CCTTTAAAGCGCGGCATTTTCCAATGGATTCCGGAATCCAATGGATTATTTCGGTATTGGAACTT
CGAAGTCCTAAAGTGAGACACTTTAAAGTTGAACGGTTAAATCCA
Right flanking sequence: Indices 286787 -- 287286
CGTCCGGAGGGGATTCTTTAATTTAATTTAATTGAAAATTAAAGTAAACTCAGGCTGGAAGGTTT
TTTCGCGGCACCTGCCCGATAAGGTGGAGCGCCCCTTCCTGGCCCGGCCTTTTAAAAGGCCTTTT
AAATGCTTGCCTTTTAAGGGTGTGGTGCCCACCTAGCAGTTGGGTGTACGGATGTGGGTGTGAAG
CGCTTCATCCTTTACGGGGTGCTCGGGCGCGTGCGCTACGCGCTGTCAACGGTGGTGGGTGGCCA
TAGGCCCAGGGCAAGCGCTTGTCGTGGGTGGCTATAGCCCCTTAAAAGGCAAGCGGCTTATTGTG
GGTGGCCATAGCCCCAAGAACCAGCCTCGCACGAGTTTTGAGTGGGGTGCCAGACTTGGGCTAGC
CTAGTCAATGAGGGGGCCTTGAAGGCCTTTCTGGGGAGAAATGGGAGGGAAAGGTAATGGGAGGG
AAGGGAAACACTTTGAAAGTTTCACTTTGAAGCTCTTTAAAGCCA
Found at i:289336 original size:69 final size:70
Alignment explanation
Indices: 289249--289382 Score: 261
Period size: 69 Copynumber: 1.9 Consensus size: 70
289239 CAAGAAAAAG
289249 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
1 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
289314 CTTCC
66 CTTCC
289319 TCCGTTTTTGGGT-CTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
1 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
289383 AATATAACCT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
69 51 0.80
70 13 0.20
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (70 bp):
TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
CTTCC
Left flanking sequence: Indices 288749 -- 289248
AACTACGTAGGGCGGGGGCCGAAGAGATGTGGTGGCGCCACCTAGGCTCTCGAAAGAAAACGAAG
GCAACTCAATTGAAAGTAGTTTTACTTTAATTTTCAATTAAAGTAAAAAGTCTTTGTAACTTTAG
CCTTCGAACTTTAGCGCTTTCGAAAGCAAAAACAACTCAATATCATCCACCGCACCCTTAAAAAA
AGCACCTTCGAAGGGAAAGCGCTTCCCCCCAACTATACTACCCCCTACCCCACTGGTAGGTCGAA
CAGGGGACTAACACGCCTAAATCGAAGCCGAATTGCCGCAGAAGAAAGTTGTTTTGGAATCCTTA
CCCTCTCCCTCCCTTCGGTCGGGTAAGTGGCGTAGCCCGACTACTGATTGGGTAAGAAAGGCAGA
TTTACTTACCTTTAAAGGGAAGAACCGTGAATACTTTAATTTAATTTCATTGAAAATTAAAGTAT
CTTCCGCCTAAAGTGTCAAAAAATCCCGGGAAACTCAAGAAAAAG
Right flanking sequence: Indices 289383 -- 289882
AATATAACCTTGAATTTTCAATTCGGATTTTCGAACAGACCACCCCTATACCTGGAAAAGGAGGA
AACGCGCCCGGCGACTTTAAAGTGGCGAGGAGCTTCTTTCGAGGCTGGCTACCGGCAGTGGCAGC
TAACCAGTAGCACTCAAGCTCTGTGGGGTAAGGGGCGATAGTTTTCGACACCCTCGACCACTCGG
AGCAAGCAGAAATTGAATTGAATTGAATTGAATTTAGAAGTAACCTTTAATTTTCAATGAAATTA
AACCGGGTAAAAATTGACTTTAATTTAGCTAGCCGGGCTGGTGAGCTAGGAGAGGTGGGGGAGGG
GGTTCCAAGAGAGAAAGAGAGGGTGAGAGAGATTGTAAGGATTTTGCTGGATCCAGTTCAGTTGT
TTCGGTTCCCTGTACCGCCGCCTGTTCGCAAAGCTGTAGAGCGGGAGTTGGGATGCCGTAGCCGG
CTCGGGTCCCGCCTGGCCGTGGCGGCTAAGCAGGGCATAACCGGT
Found at i:290562 original size:35 final size:35
Alignment explanation
Indices: 290518--290645 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
290508 CCTCCGATAG
* * **
290518 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
290553 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
290588 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
290623 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
290646 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 290018 -- 290517
TTCTTATACTTTAATTTTCAATTAAAGTAAATTAAAGGCGCATTCAAAGTACTTTAATTTTCAAT
GAAATGAAATTAAAGGCCGATTTCTTTCGCTGCCAAGGAATAAGAGAAGGCCCTACTAGACCACC
GGCCGACCGTAGGTCCTGGGGCGGTAGCGTTTCGAACTAGATCTTCTTATTCCGAAGCAGTGAAG
CGAATTCAAAGAACCTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTTAGTTTTCACCTCTTA
CTAATTCTGGAGTTAGGTAGAATGGAAGGCCACTTGCACGTGTGGGAACAGGGGGAGGGCCCGTT
AATACGCTGCTGCTGCTGTTATTGACCCTAGCACGGCTATTGACCTATTTGCCGCTTAAACGGTT
GGACGATACAGAGGTATCTTTCTTTCTTTACAGCGGATACTGAGGTTGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 290646 -- 291145
AGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTT
GGCCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCTTCTAAATGCAGAGAGAAATGAAT
CCATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGCCTCCGCATCCAGGAGTGGGTATC
AGACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGATTCACGTAGGTAGTGCCGGCAGC
AGGTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGCCAGGTCTTACGGAACCGGGTAGG
CTTCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTACGAT
Found at i:290690 original size:9 final size:9
Alignment explanation
Indices: 290643--290687 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
290633 CCGACCTACC
290643 GGGAGGAGT
1 GGGAGGAGT
290652 GGGAGGAGT
1 GGGAGGAGT
290661 GGGAGGAGT
1 GGGAGGAGT
*
290670 GGGGGGAGT
1 GGGAGGAGT
*
290679 TGGAGGAGT
1 GGGAGGAGT
290688 TGGTCCGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.67, T:0.13
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 290143 -- 290642
CCACCGGCCGACCGTAGGTCCTGGGGCGGTAGCGTTTCGAACTAGATCTTCTTATTCCGAAGCAG
TGAAGCGAATTCAAAGAACCTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTTAGTTTTCACC
TCTTACTAATTCTGGAGTTAGGTAGAATGGAAGGCCACTTGCACGTGTGGGAACAGGGGGAGGGC
CCGTTAATACGCTGCTGCTGCTGTTATTGACCCTAGCACGGCTATTGACCTATTTGCCGCTTAAA
CGGTTGGACGATACAGAGGTATCTTTCTTTCTTTACAGCGGATACTGAGGTTGAAGGGCAGGGGG
GCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 290688 -- 291187
TGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAG
GAGTTGGAGGAGTTGGAGGAGTTGGCCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCT
TCTAAATGCAGAGAGAAATGAATCCATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGC
CTCCGCATCCAGGAGTGGGTATCAGACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGA
TTCACGTAGGTAGTGCCGGCAGCAGGTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGC
CAGGTCTTACGGAACCGGGTAGGCTTCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTAC
GATGGATCCGGTTCACCGCTTTAAAGTCTTTGCCGGATTTCAAGA
Found at i:290826 original size:9 final size:9
Alignment explanation
Indices: 290814--290842 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
290804 CCGACCGAAG
290814 GGAGGAGTT
1 GGAGGAGTT
290823 GGAGGAGTT
1 GGAGGAGTT
290832 GGAGGAGTT
1 GGAGGAGTT
290841 GG
1 GG
290843 CCAGTTCCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 290314 -- 290813
CACGTGTGGGAACAGGGGGAGGGCCCGTTAATACGCTGCTGCTGCTGTTATTGACCCTAGCACGG
CTATTGACCTATTTGCCGCTTAAACGGTTGGACGATACAGAGGTATCTTTCTTTCTTTACAGCGG
ATACTGAGGTTGAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCC
CTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 290843 -- 291342
CCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCTTCTAAATGCAGAGAGAAATGAATCC
ATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGCCTCCGCATCCAGGAGTGGGTATCAG
ACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGATTCACGTAGGTAGTGCCGGCAGCAG
GTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGCCAGGTCTTACGGAACCGGGTAGGCT
TCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTACGATGGATCCGGTTCACCGCTTTAAA
GTCTTTGCCGGATTTCAAGAAATGGTCTTCTAAATCGATCCGCTGAAAATATTCTCTATGCCACC
TCAAGATCCGCTGCAATCAGTATCCGCACCTAAATATCCGCTGTAAAGCCAGCTCATGTTGAGCA
AGAAGGAATGAGATGTTGAGCTGCCGTCCTAGGCTTCAGGGACTG
Found at i:292117 original size:110 final size:110
Alignment explanation
Indices: 291984--292197 Score: 419
Period size: 110 Copynumber: 1.9 Consensus size: 110
291974 CTCCGACAGG
291984 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
1 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
292049 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCGAT
66 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCGAT
*
292094 AGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
1 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
292159 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG
66 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG
292198 CAAGGCACGG
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 103 1.00
ACGTcount: A:0.24, C:0.27, G:0.33, T:0.16
Consensus pattern (110 bp):
AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCGAT
Left flanking sequence: Indices 291484 -- 291983
ACCATTGAATTGGAGAGAGAATCGCAAATCTACTCTATCCACCTCAGTATCCGCTGTAAAGAAAG
ATACCTCAGTATCCGCTGTAAACACCTCACCGCTGTAAATCTAATATCCTCACCGCTGTAAATCT
AACTGCAAAAATAGCTTCTCAATTTTTCTTAGCACTGCGCAAGAAGAAGGGACCATCTTAGCTGC
ATTAGTTAGTGGAAGCGCATTTAATTTAAATTCAATGAAATTCCCATTCACGAACTTTAAAGGCG
TGAAATAGAAGGATGGCCACAATAATGTCGAAGGTAGGCCAAGCCAGCAAGCAAGGGCAGGGGGG
CGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCGAA
GGACCACTCCGAATTCCGATAGGGAGGAGTTGGTCCTCCGACAGG
Right flanking sequence: Indices 292198 -- 292697
CAAGGCACGGCCTTCAAGGCACATCAGTGAAGCGCTTGCGCTTCTTCTTCCCCACCCTACACATG
CCGTGCCCTTCTCTCTGCCGGGGGGCGTGTGCCGATAGGCACGGGTTCTTTGTGGGCCGGAAATT
CTGTACGTGGCCTAGATAAGCACGGGCTAGCGGCGCTCGTTGGAGGGTGGTGCTTGGGGCTAGGG
GCAGCGGCAGCCTCACCTGCTAGGTGCCTCGCGCTTTCCCTTTGAGGATAAGAGGGCGCTAGATA
GGCTTAGGCTCTGCTTGCTCACTTGGTGAAAATGGTAAACACGACAGACTTAAAATCTGTTCCAT
TGAAAGGGTTATCGGTTCAAGTCCGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTT
AGGCTTATGTTCCATTGAAAGGAGCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATG
TCGAAGATTCTTCTGATCCCGGCGCCCCCCTAAACCTTCCAAAAG
Found at i:292931 original size:31 final size:31
Alignment explanation
Indices: 292893--292952 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
292883 AGCGGTCAGA
292893 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
1 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
292924 CCAACTCCTCCCGGTAGGTCGGAGTTGTC
1 CCAACTCCTCCCGGTAGGTCGGAGTTGTC
292953 CTCGCCTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27
Consensus pattern (31 bp):
CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
Left flanking sequence: Indices 292393 -- 292892
GCAGCGGCAGCCTCACCTGCTAGGTGCCTCGCGCTTTCCCTTTGAGGATAAGAGGGCGCTAGATA
GGCTTAGGCTCTGCTTGCTCACTTGGTGAAAATGGTAAACACGACAGACTTAAAATCTGTTCCAT
TGAAAGGGTTATCGGTTCAAGTCCGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTT
AGGCTTATGTTCCATTGAAAGGAGCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATG
TCGAAGATTCTTCTGATCCCGGCGCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGAT
TTTTCATAAGGATTAAGGCCCAACTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGA
AATTTCTCCCTTTAAGTGCCTCGGACCCCTTTTAGAGCGGTCAGA
Right flanking sequence: Indices 292953 -- 293452
CTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCAATTCAATCCAATCCAAT
TCAATTAATTTGACGGCCTTAGAAGTTACTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATTAAA
GTAACAACATTGAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATG
AAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATTCAAGTAACCAGAAAAAACTTGAAAGTTC
TGAGTTTAGTCCCATGCACGTGTCCAACACGTGATAGGGGTCTATCGTCGCCCAGAAAGCTTTTT
TCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
Found at i:293096 original size:37 final size:37
Alignment explanation
Indices: 293046--293248 Score: 303
Period size: 37 Copynumber: 5.6 Consensus size: 37
293036 TTAGAAGTTA
293046 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
293083 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
* **
293120 CTTTAATTTAATTTCATTGAAAATTAAA-G----TAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
* *
293152 C--AACATTGAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTA-ATTTAATTTCATTGAAAATGAAAGGATTTTCC
293188 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
293225 CTTTAATTTAATTTCATTGAAAAT
1 CTTTAATTTAATTTCATTGAAAAT
293249 TCAAGTAACC
Statistics
Matches: 148, Mismatches: 10, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
30 1 0.01
31 21 0.14
32 3 0.02
36 3 0.02
37 119 0.80
38 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.42
Consensus pattern (37 bp):
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
Left flanking sequence: Indices 292546 -- 293045
CGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGA
GCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGC
GCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAA
CTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCG
GACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCC
GGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCA
ATTCAATCCAATCCAATTCAATTAATTTGACGGCCTTAGAAGTTA
Right flanking sequence: Indices 293249 -- 293748
TCAAGTAACCAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGATA
GGGGTCTATCGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCC
TCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGTCA
TGCGCAGATGCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGACGT
TTTCTATCTACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCGGT
CAATGTAGGGACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTATAG
CCCCGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCA
Found at i:293199 original size:105 final size:105
Alignment explanation
Indices: 293055--293257 Score: 397
Period size: 105 Copynumber: 1.9 Consensus size: 105
293045 ACTTTAATTT
293055 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
293120 CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
66 CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
293160 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
*
293225 CTTTAATTTAATTTCATTGAAAATTCAAGTAAC
66 CTTTAATTTAATTTCATTGAAAATTAAAGTAAC
293258 CAGAAAAAAC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40
Consensus pattern (105 bp):
AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
Left flanking sequence: Indices 292555 -- 293054
GCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGAGCGCCCGAT
AGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGCGCCCCCCTA
AACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAACTCCTCCCT
AACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCC
TTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCGGACCCCTTT
TAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCCGGTAGGTCG
GAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCAATTCAATCC
AATCCAATTCAATTAATTTGACGGCCTTAGAAGTTACTTTAATTT
Right flanking sequence: Indices 293258 -- 293757
CAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGATAGGGGTCTAT
CGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTAT
CGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGTCATGCGCAGAT
GCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGACGTTTTCTATCT
ACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCGGTCAATGTAGG
GACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTATAGCCCCGTGAG
TGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCAGGTTGTTTG
Found at i:293246 original size:68 final size:68
Alignment explanation
Indices: 293046--293246 Score: 224
Period size: 68 Copynumber: 2.9 Consensus size: 68
293036 TTAGAAGTTA
293046 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCA-T-----TGAAA
293111 GGATTTTCC
60 GGATTTTCC
* * **** * * * ** *
293120 CTTTAATTTAATTTCATTGAAAATTAAAGTA-ACAACATTGAATTTCATTGAAAATGAAAGGATT
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATT-TCATTGAAAGGATT
293184 TTCC
65 TTCC
293188 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAA
293247 ATTCAAGTAA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
68 49 0.49
69 11 0.11
73 11 0.11
74 30 0.30
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.42
Consensus pattern (68 bp):
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAGGATTT
TCC
Left flanking sequence: Indices 292546 -- 293045
CGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGA
GCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGC
GCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAA
CTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCG
GACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCC
GGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCA
ATTCAATCCAATCCAATTCAATTAATTTGACGGCCTTAGAAGTTA
Right flanking sequence: Indices 293247 -- 293746
ATTCAAGTAACCAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGA
TAGGGGTCTATCGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGAC
CCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
GAAGGGAGGAGTTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGT
CATGCGCAGATGCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGAC
GTTTTCTATCTACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCG
GTCAATGTAGGGACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTAT
AGCCCCGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGT
Found at i:294233 original size:21 final size:21
Alignment explanation
Indices: 294207--294246 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
294197 TGGCAGGGTT
294207 AAAATACATGACTTTAAAGTG
1 AAAATACATGACTTTAAAGTG
294228 AAAATACATGACTTTAAAG
1 AAAATACATGACTTTAAAG
294247 AAAGCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (21 bp):
AAAATACATGACTTTAAAGTG
Left flanking sequence: Indices 293707 -- 294206
CGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCAGGTTGTTTGGTCTGGGTCCCTCC
GTGGATCCGGCAGGATTTAGTTTCCGACCAATCGGAGAAAAATTTCTAAGTAAAAACCAGATAAC
TAGTCAATGGGGGCCTTGAAGGCCTTTCGTGCTACGCACTTGAAGGCTGCAGGACACACTCCCTT
CAAGCCTTGATGCTCAGGAAAGTGCTGCCTCTGACCCTGGCATTAAGGAAGAGTATCCCATTCGT
CTAGGAGTAAGTACGGAGTCCCTTCAGAGTCCAGACACTCTGTCGCGAGTCTGGCAGCCAGTCTC
CAGTGGATACAGAGCATACTGTGTTGGCCTCGAAATGTTTTCGGAACCGAAGACACGAGAGCGCT
ACGCGCGTGGAAGAAGCGCGTAGCAATCGAAGGCATCCATCTACGAAAGGGTGTTATTGGCGCCT
ATACCAAAGCTGTGAGGCGATTGTCTCGGGACTGTTGGCAGGGTT
Right flanking sequence: Indices 294247 -- 294746
AAAGCTTTTTAAAGGGCTCAATTACTACCTAGGCTGCCGGGCTGGCATCACTCACTAGTTCGGCT
TTTTGGCTGAATAAACACTAGGGGCTGGGTGGGAAGGTCGTGGCGAGTAAGGCTTGTGCGAGAGA
AAGCTAGGGGATTTTCAATTAATTTAATCAAATTCAATTAATTTTCAATTAATTGAAAATTAATT
GAATCCTTATTGAGAAGTTCGCTGTAGAAAGAAAAATTTCTCAATTTTTCTTTCTACAGCGCGCT
GTAGAAAGAAGCCAAAAGTTGAACCGTTGAAAGAACCGGCCTAACTAAGCTTAAGCCATTGAAGT
CTCAGACCTTTAAACTAGCCGCCCTCTTGACCCTCGGGCTTAAAGCCAGGTTGGATTGGATTGAA
GGATTGGACGGGTTAAATAAGCGGTAGTGACCCGCCGTATTGCCGCATCGTTCTTTTGATCTTGG
CCTAGCCGCCTCTTGTATTGCCCTTGAGCTTGACCACCTTCTCGG
Found at i:295039 original size:15 final size:15
Alignment explanation
Indices: 295021--295071 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
295011 AAATCGCCTA
295021 AATTCATTGAAAATT
1 AATTCATTGAAAATT
* * *
295036 AATTCGTTTGAAAGTA
1 AATTC-ATTGAAAATT
*
295052 AATTAATTGAAAATT
1 AATTCATTGAAAATT
295067 AATTC
1 AATTC
295072 GGTTTATTTA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (15 bp):
AATTCATTGAAAATT
Left flanking sequence: Indices 294521 -- 295020
AAAGTTGAACCGTTGAAAGAACCGGCCTAACTAAGCTTAAGCCATTGAAGTCTCAGACCTTTAAA
CTAGCCGCCCTCTTGACCCTCGGGCTTAAAGCCAGGTTGGATTGGATTGAAGGATTGGACGGGTT
AAATAAGCGGTAGTGACCCGCCGTATTGCCGCATCGTTCTTTTGATCTTGGCCTAGCCGCCTCTT
GTATTGCCCTTGAGCTTGACCACCTTCTCGGATTCTTTAACCGGGAAGCGCCGGTAGCCCAGCAC
CTGACCCCCTCAGGCCCTTGCCTCTTGACTCAGGCCCAACCGGCGCTCATCGGTAAGGACTCCAG
TACCTGAATGAGTGGATTTTTTGCCCGGAAAGCGCTCATCAAGGACCCCAGCAGGCCCAGCCTAG
TTGCCACACTAGTACTGGACCCCTCTTGCCCTTGCCTCTTGACTCAGGCCCTTGGAAGTAGGGTT
TGGGTTGCCGGACTTGGACTGGCGACTGGCCATTCAAATCGCCTA
Right flanking sequence: Indices 295072 -- 295571
GGTTTATTTAATTTAAAATTAAAGTACCTTCTAGGTAAATTGCCGAACCCCTTCTTCTAAAGTGG
AAAGCGCGTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCGAACCGCCTAAGTGGCCTAA
AGGCCGGAGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCCTCTCCGGGCACTACTTCGC
TTTCCTACAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTGTTACGATAGGCGAGGGAAA
TCACGCGTACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGC
TTTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACG
CAAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAA
AATTAAGCTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCG
Found at i:295610 original size:40 final size:42
Alignment explanation
Indices: 295553--295651 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 42
295543 CAACTTATAA
295553 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTG-TCCTATCGG
1 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTGCTCCTATCGG
295594 A-CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGG
1 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTG--CTCCTATCGG
295637 AGGGCCAACTCCTCC
1 A--GCCAACTCCTCC
295652 AACTCCTCCC
Statistics
Matches: 52, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
40 30 0.58
41 1 0.02
43 10 0.19
46 11 0.21
ACGTcount: A:0.17, C:0.38, G:0.20, T:0.24
Consensus pattern (42 bp):
AGCCAACTCCTCCCTCTCGGAATTCGGAGTTGCTCCTATCGG
Left flanking sequence: Indices 295053 -- 295552
ATTAATTGAAAATTAATTCGGTTTATTTAATTTAAAATTAAAGTACCTTCTAGGTAAATTGCCGA
ACCCCTTCTTCTAAAGTGGAAAGCGCGTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCG
AACCGCCTAAGTGGCCTAAAGGCCGGAGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCC
TCTCCGGGCACTACTTCGCTTTCCTACAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTG
TTACGATAGGCGAGGGAAATCACGCGTACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTC
TAAGAAAATGACCATAGGCTTTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGC
TTTTAAAAGACAGAAAACGCAAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACT
TTAATTTAATTTCATTGAAAATTAAGCTGTTTTTTCAACTTATAA
Right flanking sequence: Indices 295652 -- 296151
AACTCCTCCCACTCCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGT
AGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTC
CCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCG
Found at i:295665 original size:18 final size:18
Alignment explanation
Indices: 295644--295679 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
295634 CGGAGGGCCA
*
295644 ACTCCTCCAACTCCTCCC
1 ACTCCCCCAACTCCTCCC
*
295662 ACTCCCCCCACTCCTCCC
1 ACTCCCCCAACTCCTCCC
295680 TTCGGTCGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.67, G:0.00, T:0.19
Consensus pattern (18 bp):
ACTCCCCCAACTCCTCCC
Left flanking sequence: Indices 295144 -- 295643
GTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCGAACCGCCTAAGTGGCCTAAAGGCCGG
AGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCCTCTCCGGGCACTACTTCGCTTTCCTA
CAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTGTTACGATAGGCGAGGGAAATCACGCG
TACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCA
AAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGG
CTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAG
CTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 295680 -- 296179
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCC
CACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
TCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGG
GGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
Found at i:295858 original size:9 final size:9
Alignment explanation
Indices: 295840--295893 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
295830 CTTCGGACCA
295840 ACTCCTCCC
1 ACTCCTCCC
*
295849 ACTCCCCCC
1 ACTCCTCCC
295858 ACTCCTCCC
1 ACTCCTCCC
*
295867 ACTCCCCCC
1 ACTCCTCCC
295876 ACTCCTCCC
1 ACTCCTCCC
295885 ACTCCTCCC
1 ACTCCTCCC
295894 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 295340 -- 295839
ACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCAA
AGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGGC
TGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAGC
TGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAAC
TCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCCTCCCACT
CCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 295894 -- 296393
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCG
GGGGGCGCGTAGCGCCCCCCTGCCCTAAGAACCTTTCATTGAATTTCATTGAAAATTAAGAATTC
TGTTGCGAAGAAGTAAAATAATTGAGTATATTGGAATTCTCGTAGATAGATGGAGCACATTGGAA
TTCTCAAGTCAGTGGGCCTTCGCCAAGCTTTGCTACGCGCTATGTGAGCTCTCTACTTACTTCGA
TCAGTGGTGGGTAGAAGGCGCTTATGCGCACCCGGGCCTCACGTA
Found at i:295863 original size:18 final size:18
Alignment explanation
Indices: 295840--295889 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
295830 CTTCGGACCA
295840 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
295858 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
295876 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
295890 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 295340 -- 295839
ACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCAA
AGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGGC
TGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAGC
TGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAAC
TCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCCTCCCACT
CCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 295890 -- 296389
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCC
CGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGAACCTTTCATTGAATTTCATTGAAAATTAAGA
ATTCTGTTGCGAAGAAGTAAAATAATTGAGTATATTGGAATTCTCGTAGATAGATGGAGCACATT
GGAATTCTCAAGTCAGTGGGCCTTCGCCAAGCTTTGCTACGCGCTATGTGAGCTCTCTACTTACT
TCGATCAGTGGTGGGTAGAAGGCGCTTATGCGCACCCGGGCCTCA
Found at i:295936 original size:34 final size:34
Alignment explanation
Indices: 295898--296118 Score: 424
Period size: 34 Copynumber: 6.5 Consensus size: 34
295888 CCTCCCGGTA
295898 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
295932 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
295966 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
296000 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
296034 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
296068 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
296103 GGTCGGAGTGGCCCTC
1 GGTCGGAGTGGTCCTC
296119 CTATCGGAGG
Statistics
Matches: 185, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
34 168 0.91
35 17 0.09
ACGTcount: A:0.09, C:0.32, G:0.30, T:0.29
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 295398 -- 295897
TTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGC
AAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAA
ATTAAGCTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCG
GACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCC
TCCCACTCCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTC
CCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 296119 -- 296618
CTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGA
ACCTTTCATTGAATTTCATTGAAAATTAAGAATTCTGTTGCGAAGAAGTAAAATAATTGAGTATA
TTGGAATTCTCGTAGATAGATGGAGCACATTGGAATTCTCAAGTCAGTGGGCCTTCGCCAAGCTT
TGCTACGCGCTATGTGAGCTCTCTACTTACTTCGATCAGTGGTGGGTAGAAGGCGCTTATGCGCA
CCCGGGCCTCACGTAGGTACCCTTACCACTAGGCACTACGCGGGTACAGGTGGGAGGCCAGCCGT
GGGGTACCTACCTAGGCTAGCCCCACACTTGGCCAGCTTTGCTACGCGCTATAGGCACCGCCTAG
CAGAGCTTCCTATTTACTCCGATTAGTGGGCACAACGGCGCCTGACCCCTTTTATAGAAGACGCG
CTTTCTTGACCTCCCCTGACCACATAGCGCGTAGCGCACCCACTA
Found at i:296908 original size:17 final size:17
Alignment explanation
Indices: 296886--296926 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
296876 TTATTAACTA
296886 CCAAAGTGTAGAATAAG
1 CCAAAGTGTAGAATAAG
296903 CCAAAGTGTAGAATAAG
1 CCAAAGTGTAGAATAAG
296920 CCAAAGT
1 CCAAAGT
296927 TCTCAACCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (17 bp):
CCAAAGTGTAGAATAAG
Left flanking sequence: Indices 296386 -- 296885
CTCACGTAGGTACCCTTACCACTAGGCACTACGCGGGTACAGGTGGGAGGCCAGCCGTGGGGTAC
CTACCTAGGCTAGCCCCACACTTGGCCAGCTTTGCTACGCGCTATAGGCACCGCCTAGCAGAGCT
TCCTATTTACTCCGATTAGTGGGCACAACGGCGCCTGACCCCTTTTATAGAAGACGCGCTTTCTT
GACCTCCCCTGACCACATAGCGCGTAGCGCACCCACTAGGCGCATACACCCTCTTAGGCGCCAAA
TAGGTTAAAGCGCTACTAGTTGGGCTAGCATACCTAGCGTAGCGACCACTAGGCGCGTAGCCTAG
ACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCCTAG
TTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACCCCC
GGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTA
Right flanking sequence: Indices 296927 -- 297426
TCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGCGTTAATAACCTTTAATTTTCAATG
AAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAGTAGAATAAGCGATTGGACTTTCAC
TAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTACGTGCCACTACTAGTACCCCTCACT
AGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAGTACTTTCAAGCTGCCGGGCGGCCG
GAAAAGCAGAAATGAGGCAATAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
AGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCG
GAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTT
Found at i:297251 original size:34 final size:34
Alignment explanation
Indices: 297208--297309 Score: 150
Period size: 34 Copynumber: 3.0 Consensus size: 34
297198 ATGAGGCAAT
* * *
297208 AAGGGTCCGAGCGAAGCGAGGACAACTCCGACCG
1 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
*
297242 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
1 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
*
297276 ACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 A-AGGGTCCGAACGAAGTGAGGACCACTCCGACC
297310 TACCGGGAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
34 31 0.50
35 31 0.50
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.09
Consensus pattern (34 bp):
AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
Left flanking sequence: Indices 296708 -- 297207
TAGACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCC
TAGTTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACC
CCCGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTACCAAAGTGTAGAATAAG
CCAAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGC
GTTAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAG
TAGAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTAC
GTGCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAG
TACTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGCAAT
Right flanking sequence: Indices 297310 -- 297809
TACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCC
TTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAA
TACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGG
TTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCT
GCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCC
GCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGC
AGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAG
TTGTTCAAGGAATGAGAAATAAAATCCCAACTCCTCCAACTCCTC
Found at i:297290 original size:35 final size:35
Alignment explanation
Indices: 297210--297316 Score: 162
Period size: 35 Copynumber: 3.1 Consensus size: 35
297200 GAGGCAATAA
* * * * *
297210 GGGTCCGAGCGAAGCGAGGACAACTCCGACCGA-A
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
297244 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
297279 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
297314 GGG
1 GGG
297317 AGGAGTTGGA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
34 29 0.43
35 38 0.57
ACGTcount: A:0.26, C:0.32, G:0.33, T:0.09
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 296710 -- 297209
GACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCCTA
GTTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACCCC
CGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTACCAAAGTGTAGAATAAGCC
AAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGCGT
TAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAGTA
GAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTACGT
GCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAGTA
CTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGCAATAA
Right flanking sequence: Indices 297317 -- 297816
AGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCG
GAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAATACAGTT
AGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGGTTCGAAA
CAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCTGCAAAGA
AGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCCGCTGTTG
AGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGCAGCTTTA
ATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAGTTGTTCA
AGGAATGAGAAATAAAATCCCAACTCCTCCAACTCCTCCAACTCC
Found at i:297327 original size:9 final size:9
Alignment explanation
Indices: 297315--297352 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
297305 CGACCTACCG
297315 GGAGGAGTT
1 GGAGGAGTT
297324 GGAGGAGTT
1 GGAGGAGTT
297333 GGAGGAGTT
1 GGAGGAGTT
297342 GGAGGAGTT
1 GGAGGAGTT
297351 GG
1 GG
297353 CGGTAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.58, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 296815 -- 297314
ACTATGCATAGCACGTAGCGACCCCCGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTAT
TAACTACCAAAGTGTAGAATAAGCCAAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGA
AGACGCGCTTTCTTGAAAGCTGCGTTAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTC
TTTCTTTAAGTTGTAAATTTTAGTAGAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACC
ACTAGTAGTGACGTGTCCCGTACGTGCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAA
TTTTAAATTAGATTAAATTAAAGTACTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGC
AATAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 297353 -- 297852
CGGTAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAA
GCTGCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCT
TTAGGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTT
AAAGGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAA
AGAAGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTA
AAGGTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAAC
TTTGAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAATCCCAACTCCTCCAACTCC
TCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
Found at i:297805 original size:9 final size:9
Alignment explanation
Indices: 297791--297828 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
297781 AAATAAAATC
297791 CCAACTCCT
1 CCAACTCCT
297800 CCAACTCCT
1 CCAACTCCT
297809 CCAACTCCT
1 CCAACTCCT
297818 CCAACTCCT
1 CCAACTCCT
297827 CC
1 CC
297829 CGGTAGGTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 297291 -- 297790
AGTGAGGACCACTCCGACCTACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGG
TAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCT
GCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTA
GGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAA
GGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGA
AGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAG
GTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTT
GAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAATC
Right flanking sequence: Indices 297829 -- 298328
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGCCTTTAGGCACTCG
ACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCTAACAAGATCCGCTGTTAAAC
CAGTGAATAAAGGGTGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTATTAGGAATTCGAT
TTCTCCGCTGTTTTGCAGCGTTAAAGTGCTGTTAAACTAATGGTTCTGCGATCCGCTTCTGAGAC
ATGTTCAGGACATGAAGGGATGGCTTGGGCAACCTAATCGCATGG
Found at i:297872 original size:34 final size:34
Alignment explanation
Indices: 297834--298074 Score: 473
Period size: 34 Copynumber: 7.1 Consensus size: 34
297824 CCTCCCGGTA
297834 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
297868 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
297902 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
297936 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
297970 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298004 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298038 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
298073 GG
1 GG
298075 CCTTTAGGCA
Statistics
Matches: 206, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
34 202 0.98
35 4 0.02
ACGTcount: A:0.09, C:0.32, G:0.30, T:0.29
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 297334 -- 297833
GAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACA
CAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTC
CCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAA
GTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGA
GGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCAT
TGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCA
ATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAA
TCCCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 298075 -- 298574
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCTAACAAG
ATCCGCTGTTAAACCAGTGAATAAAGGGTGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
ATTAGGAATTCGATTTCTCCGCTGTTTTGCAGCGTTAAAGTGCTGTTAAACTAATGGTTCTGCGA
TCCGCTTCTGAGACATGTTCAGGACATGAAGGGATGGCTTGGGCAACCTAATCGCATGGTGGAAG
GACTAATCCCGGCCGAAGAATCTATCAAGGAATAAAGGTGGGGGAATTCTGTAAAGCGCTAGCGA
CCCCCTACCCCTTCACAAAGCGCTTCGCGCCACCACCACTACTAGCAATGAATATCCTCGAATAT
GGAATATCCTCTAGTACAAGGACCTGTACAGTCGTATCATAACTTTATGCTGGGATTAGCTGAGG
ATGGGTCCCGGAGGAAAAGATGGTATGGTATGGCCCTTTGATAGC
Found at i:299832 original size:18 final size:18
Alignment explanation
Indices: 299809--299855 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
299799 CTAACTCCAT
299809 GGAAGGCACAGAAGACAC
1 GGAAGGCACAGAAGACAC
* * * *
299827 GGAAGGGACGGAATACGC
1 GGAAGGCACAGAAGACAC
299845 GGAAGGCACAG
1 GGAAGGCACAG
299856 GTCGGGAAGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.40, T:0.02
Consensus pattern (18 bp):
GGAAGGCACAGAAGACAC
Left flanking sequence: Indices 299309 -- 299808
GCTAGTAGGGAAGCGGGCCGATACCGACGTACCAATCATCGTCCTTCCCCAAGCCTCTGGTTGGG
GGGCCTTTAAAGTTGCCGTGAAAGCGCTACGCGCCCGCCCCACCCTTGAAGGGGAGGCTAACGGG
GGAGGGGGCATTAAAGATAATTTGCCATAGTAGGGCCGGGTGGGCAAATAGAGCTTACTTCCGAT
TCGGATTCTGCGACGGCTGCTAAGTCGTCGTAGCGGGTAGGCTAGGCGCTAGTGCCTTGCCGGGA
GGTTGTCACACGCCTGGGCGTGTAAAGAAAGGCGGGAAGGCCTAACGGGCTATGGGGGTAGGGAG
GACCCGCCTAAGGTCCAAAGAGCGGGCGGAGCAGTAGGCACGTAATCAGCAGAAGGCGCTTACGA
CACGGAATCGGCTACAGGCACTATGGCTACAGGCGCGAGATTAGCGGAGGCAGAAAACGCGGAAT
GCTAGGCTTTTTGAAGGCTTTATCAGAATCTGAAACTAACTCCAT
Right flanking sequence: Indices 299856 -- 300355
GTCGGGAAGCAGCCTTCCGGGACCTAGAGGGGGCCGGCACACCACGAGCCGGCAGGGGAAGCGCC
TCTCAGAGCGCGGTCCCCTACCTACGGTAACCCACCAATCCAAAGTAGGTCAAGGTGGATGCACT
ACCTTTTCGTGCAGAGCTATGTTACAGTAATTTAATTTCATTGAAAATTAATAAATCACGGCACT
CCTCTCACCCGAAGAAGTGGATGCTTGGGGATCACAGCTGAGACAGACTGTGAATTAACTGGATA
AGGAAGAGCTAGGGTGGCGGGTGGGAGAAGCAAGAGCTATTGAGAAGTCGATTGTTCAATGTGAC
AGCTATACAGACAAAAGATTGAATGCAGTACCCGCTTTAAAAAAGCATCATCTCTCTCACCCACC
CATTCACGAGGAGCTAGCCTTGTCCTTTTCTCGCCATCTCCACCACACGGAATCACGTAGATAGA
AATAAGTGGCGAGGCCCTCTGGAGCGGGATCGTTCCATGGTTCTG
Found at i:300629 original size:34 final size:34
Alignment explanation
Indices: 300591--300658 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
300581 AACTCCCCCA
300591 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
300625 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
300659 CTATCGGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.32, T:0.09
Consensus pattern (34 bp):
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
Left flanking sequence: Indices 300091 -- 300590
AGACAGACTGTGAATTAACTGGATAAGGAAGAGCTAGGGTGGCGGGTGGGAGAAGCAAGAGCTAT
TGAGAAGTCGATTGTTCAATGTGACAGCTATACAGACAAAAGATTGAATGCAGTACCCGCTTTAA
AAAAGCATCATCTCTCTCACCCACCCATTCACGAGGAGCTAGCCTTGTCCTTTTCTCGCCATCTC
CACCACACGGAATCACGTAGATAGAAATAAGTGGCGAGGCCCTCTGGAGCGGGATCGTTCCATGG
TTCTGTAAGACCTCGTATGATGCTGTTGGTCCGGTGGCGTATTCTAGTGCACGCATACCGGCGCT
TTCACTTTGTCAAAACACGTATATAGAAGAAGCTTCACAAACCATTCAGTGTGGTTCAGCAACAG
TCGATTCTTCCGTTCCATTCGTTGGAAGGCCTAACGGAATTAACAACGATCCAACCGGACCCACC
CACTTTGTAGGTGGTGGTGGGGTCGGGAGTTGGCCAACTCCCCCA
Right flanking sequence: Indices 300659 -- 301158
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTACTAGGCAGGAAATTCTGTGAGATTT
TGTACGGTGTTCAGTAGGTTCAATTACTACTGTATCGAAAAGAACGCATTGGATGGATGCCTAGG
CATTGAGAAGTAAGGACGCTTTCAAAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGG
ATCTCCAATCGGGAAACCGTATCCAAGCTTTAGGGCATGCTTAAAAGTGCTGCGGCTCCGCTTTG
GACCTCCAAAACTGGCGCGAACCGAAACATCGTTGTAGCCAAAGGAAAGGAAATCAACCGAGACT
CCGTTAGTAGCGGCGAGCGAAAGCGGATTAGGCAAGCGGCAGGGGAAATAACCACCCCCAATACC
CAGGGGGGAACTTGCGGGGGCTTTAAACCCCCAACTCCAACTCCTCCCTTCGGTCGGACCCTGCG
GGATTCTGAAAAGGTTGGAAAATCTGGCCAAAGAAGGTGATAGCC
Found at i:304321 original size:82 final size:82
Alignment explanation
Indices: 304186--304591 Score: 791
Period size: 82 Copynumber: 5.0 Consensus size: 82
304176 GGACCGCAAG
304186 GGCCCTCCGATAGGAGGGCAACTCCG-A--CCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
304248 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
304265 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
304330 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
304347 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
304412 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
304429 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
304494 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
304511 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
304576 ACCGATAGGGAGGAGT
66 ACCGATAGGGAGGAGT
304592 GGGGGGAGTT
Statistics
Matches: 324, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
79 26 0.08
80 1 0.00
82 297 0.92
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (82 bp):
GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTT
Left flanking sequence: Indices 303686 -- 304185
TGAATAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACG
TCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTTTGCCGAGAACTGCGAGAAGCCTACCCTAGT
ACGAGAGGACTGGGTTGGGTCAACCTATAGTGTTCCGGTTGTTGTGCCAATAGCAGCGCCGGGTA
GCTAAGTTGGTAGGGAAGAACCGCTGAAAGCATCTAAGCAGGAAATCCTTCTCTAGACAAGTTCT
CCTAAAAGGTGAAAGAGCATCACTTCGATAGGCGAGGGGTGAAAGCACCGCAAGATGGGCGCTTC
CTCGTACTAATAGAGATTTACTTTTGGCAGAACTAGAGAAAGCGCGCCTTGCCGGCCCAGCTTCG
GTTCCCGGCTGGCAAGGGGAAAGCGCGAGGACAGGGGCTTTAGCCTACTCCTTTAAACCCCCACA
CCACCACCATGAAGTGGTGGGGGTTTAAAGGAGTTGGACCGCAAG
Right flanking sequence: Indices 304592 -- 305091
GGGGGGAGTTGGCCAACTCCTTTAAACCCCACCACCCCACATGAATTGGGTGGGTAGGGAGTTGG
AAAGCGCTTGCCAAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAGAAGGTTTCA
ATTCATTTTAAATTAAAGTAAATTAAAGTAACTAGAAGGTTTCAATTCATTTTAAATTAAAGTAA
ATTAAAGTAACTAGAAGGTTTCAATTCATTTTAAATTAAAGTATCACTTATAAATAATAGATAGG
GGTTCAAATTCACAAGGACTTTTTAATTTTGAAATTAAAAAGTCTTTGTAACTTTGTATTTCCCT
TTTTGTACGGAAGTTTCCCCCCTAATAGTTTACTAGAGTGGCTTAGCGTCCCACGCTGAGCCGGG
GTTTGCCAGGCCCACTTAAGGTATCGTGGAGGTTTTAAAGAGGTGGGAGGCCGAAAGACTTTCTT
GCAGGCTACGCTTCCCGTCTATCGACCCTTCGGGCCCCATTGCAC
Found at i:304732 original size:44 final size:44
Alignment explanation
Indices: 304669--304829 Score: 322
Period size: 44 Copynumber: 3.7 Consensus size: 44
304659 AGCGCTTGCC
304669 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
304713 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
304757 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
304801 AAGGTTTCAATTCATTTTAAATTAAAGTA
1 AAGGTTTCAATTCATTTTAAATTAAAGTA
304830 TCACTTATAA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 117 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (44 bp):
AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
Left flanking sequence: Indices 304169 -- 304668
AGGAGTTGGACCGCAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGGTCC
GAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATTCCGA
TAGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGG
GCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGG
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTGGGGGGAGTTGGCCAACTCCTTTAAACCCCAC
CACCCCACATGAATTGGGTGGGTAGGGAGTTGGAAAGCGCTTGCC
Right flanking sequence: Indices 304830 -- 305329
TCACTTATAAATAATAGATAGGGGTTCAAATTCACAAGGACTTTTTAATTTTGAAATTAAAAAGT
CTTTGTAACTTTGTATTTCCCTTTTTGTACGGAAGTTTCCCCCCTAATAGTTTACTAGAGTGGCT
TAGCGTCCCACGCTGAGCCGGGGTTTGCCAGGCCCACTTAAGGTATCGTGGAGGTTTTAAAGAGG
TGGGAGGCCGAAAGACTTTCTTGCAGGCTACGCTTCCCGTCTATCGACCCTTCGGGCCCCATTGC
ACATTGATTTTACAGCGAGTAATAGGAAGAGTAAGAAGAAGAAATCTTGGTTCGCGCTTTCTCCA
ATTGGGCTCACCTATCCATGCCGAATCAATCAATTCGAAACGTCTAAAATACATGACTTTAAACG
TAAATTCCCGCGAAGCGGGACGCTACCCAATCGCGGGGTAGAGTAATTGGCTAACTCGTTGGGCT
CATGACCCAAGCATGCAGGTTCGAACCCTGCCTCCGCCAAACCGG
Found at i:305687 original size:35 final size:35
Alignment explanation
Indices: 305601--305693 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 35
305591 CCTCCGATAG
* * **
305601 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
305636 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
305671 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
305694 AGGAGTTGGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.25, C:0.33, G:0.31, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 305101 -- 305600
ACAGCGAGTAATAGGAAGAGTAAGAAGAAGAAATCTTGGTTCGCGCTTTCTCCAATTGGGCTCAC
CTATCCATGCCGAATCAATCAATTCGAAACGTCTAAAATACATGACTTTAAACGTAAATTCCCGC
GAAGCGGGACGCTACCCAATCGCGGGGTAGAGTAATTGGCTAACTCGTTGGGCTCATGACCCAAG
CATGCAGGTTCGAACCCTGCCTCCGCCAAACCGGCCCCCGCAATCAAACGCACGCTTTTCCAATA
GAATCACGTAGATAGAATGGATTCTCGAATAAAGCCACTCCGCCCCTTACAGTGGAGGTCCGACC
CCTACAGCTAGCTGGGTGCCTATCGCCTAGAAAGTAAAATGACTTTAATTTCATTTCATTGAAAA
TTAAAGGTTCTTACCGAAAACACCCGGACAGCTGCCAGGGGAAAGTACGCATCACTTCGCTGTCG
TCTGTATAGGGAGAGATCAACTCTGTTTCGAGGGCCCTCCGATAG
Right flanking sequence: Indices 305694 -- 306193
AGGAGTTGGAGGAGTTGGAGGAGTTGGCAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGA
GACTACGGGCCGAGCCTGAGAGCAGGGTGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGG
AGGGCAAGGGCCGGGTCGTGGGTCCCCTGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGG
GCCGAGCCTGAGGGCAGGGTGGTGGGCTGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGA
GCCGCGCTCACGGCACAAATAACAAGTTGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCT
TCTACACGAAAAACCTCAAAAACAACATTGAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
Found at i:305704 original size:9 final size:9
Alignment explanation
Indices: 305692--305720 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
305682 CGACCTACCG
305692 GGAGGAGTT
1 GGAGGAGTT
305701 GGAGGAGTT
1 GGAGGAGTT
305710 GGAGGAGTT
1 GGAGGAGTT
305719 GG
1 GG
305721 CAAGGCCCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 305192 -- 305691
AAACGTCTAAAATACATGACTTTAAACGTAAATTCCCGCGAAGCGGGACGCTACCCAATCGCGGG
GTAGAGTAATTGGCTAACTCGTTGGGCTCATGACCCAAGCATGCAGGTTCGAACCCTGCCTCCGC
CAAACCGGCCCCCGCAATCAAACGCACGCTTTTCCAATAGAATCACGTAGATAGAATGGATTCTC
GAATAAAGCCACTCCGCCCCTTACAGTGGAGGTCCGACCCCTACAGCTAGCTGGGTGCCTATCGC
CTAGAAAGTAAAATGACTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTACCGAAAACACCCG
GACAGCTGCCAGGGGAAAGTACGCATCACTTCGCTGTCGTCTGTATAGGGAGAGATCAACTCTGT
TTCGAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 305721 -- 306220
CAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGGCCGAGCCTGAGAGCAGGG
TGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGGGCCGGGTCGTGGGTCCCC
TGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCTGAGGGCAGGGTGGTGGGC
TGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTCACGGCACAAATAACAAGT
TGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGAAAAACCTCAAAAACAACA
TTGAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
Found at i:306161 original size:65 final size:64
Alignment explanation
Indices: 306073--306217 Score: 272
Period size: 65 Copynumber: 2.2 Consensus size: 64
306063 CCTCCGACAG
306073 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA-AGGGTCCGAACGAAGT
306138 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
*
306202 GAGGACCACTCCGACC
1 GAGGACAACTCCGACC
306218 TACCGGGAGG
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
64 31 0.39
65 48 0.61
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (64 bp):
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 305573 -- 306072
CAACTCTGTTTCGAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTTGG
AGGAGTTGGAGGAGTTGGCAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGG
CCGAGCCTGAGAGCAGGGTGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGG
GCCGGGTCGTGGGTCCCCTGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCT
GAGGGCAGGGTGGTGGGCTGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTC
ACGGCACAAATAACAAGTTGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGA
AAAACCTCAAAAACAACATTGAATCAAAAAAGGGTCCTCCGACAG
Right flanking sequence: Indices 306218 -- 306717
TACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGAACCCTGAAATCATCTTTGACACCAAGCA
GCAGCATAGAGTCATCCGTCCCCGTCCTTCGCCACTAGCTCCGCCTTCCCCCTCCTCGTGCCGCC
ACTTCTGGGTGTTGCTGGAAGGAAAAGAAGTTTAAAGTCCTAAAGTCATGTGAGGTTCCGGTGGA
AAAGAGTCAATATTTACTCTTGCAAGCAGCCACGGAGGGCGATCCCCTGCCGAGTAAGAGCACTC
GAGCTTTATGAGTGTGCAGAAGATCTTTTTTGGCCTTCAACATCTCCGAGCATGAATTCCTTAAG
CGGAAGCCATACGACGCCGACCTCACTCCTATTGAGGTCGAGGTTTTACAAGAAGCTATGGTAGC
CCTGGAGAGAAACTTAAAAACTATGCATTTAAGTGAAGTGCTCCTCGAAATCGCTTAAAAGTAAT
TTGAAAAACCATGAAATGAAAGTTCGTGAAGAAGGCTAGGCAGGG
Found at i:306235 original size:9 final size:9
Alignment explanation
Indices: 306223--306253 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
306213 CGACCTACCG
306223 GGAGGAGTT
1 GGAGGAGTT
306232 GGAGGAGTT
1 GGAGGAGTT
306241 GGAGGAGTT
1 GGAGGAGTT
306250 GGAG
1 GGAG
306254 AACCCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 305723 -- 306222
AGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGGCCGAGCCTGAGAGCAGGGTG
GAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGGGCCGGGTCGTGGGTCCCCTG
GTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCTGAGGGCAGGGTGGTGGGCTG
CTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTCACGGCACAAATAACAAGTTG
ACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGAAAAACCTCAAAAACAACATT
GAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
AAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
AAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 306254 -- 306753
AACCCTGAAATCATCTTTGACACCAAGCAGCAGCATAGAGTCATCCGTCCCCGTCCTTCGCCACT
AGCTCCGCCTTCCCCCTCCTCGTGCCGCCACTTCTGGGTGTTGCTGGAAGGAAAAGAAGTTTAAA
GTCCTAAAGTCATGTGAGGTTCCGGTGGAAAAGAGTCAATATTTACTCTTGCAAGCAGCCACGGA
GGGCGATCCCCTGCCGAGTAAGAGCACTCGAGCTTTATGAGTGTGCAGAAGATCTTTTTTGGCCT
TCAACATCTCCGAGCATGAATTCCTTAAGCGGAAGCCATACGACGCCGACCTCACTCCTATTGAG
GTCGAGGTTTTACAAGAAGCTATGGTAGCCCTGGAGAGAAACTTAAAAACTATGCATTTAAGTGA
AGTGCTCCTCGAAATCGCTTAAAAGTAATTTGAAAAACCATGAAATGAAAGTTCGTGAAGAAGGC
TAGGCAGGGCTTCAGTGGTGGCGCCAAACCCTAGGAGCCTTCTTT
Found at i:307509 original size:66 final size:68
Alignment explanation
Indices: 307345--307531 Score: 209
Period size: 71 Copynumber: 2.7 Consensus size: 68
307335 GACCTTTAAA
* * * *
307345 AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAACTCCG
1 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGA-AGGGAGGAGTTGGAGGAGTTGGC-ACTCC-
*
307410 ACCTGT
63 ACCTCT
*
307416 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTC-CTCC-C
1 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG-CACTCCAC
*
307479 GTCT
65 CTCT
* *
307483 -GGGTCCGAGCGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGG
1 AGGGTCCGAACGAAGTGAGGACAACTCCG-A--CCGAAGGGAGGAGTTGG
307532 CCTACACTCC
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.25
67 4 0.04
69 21 0.21
70 19 0.19
71 33 0.32
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.14
Consensus pattern (68 bp):
AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCACTCCACC
TCT
Left flanking sequence: Indices 306845 -- 307344
GGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAG
GACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGCCCTTTTAATTAAATAAAAGGTTCGCTCG
GACCCTAGATTTTGTTGCTGGAAGGGGAGTTTTAACTTTCTATAGAAGTGCCCACCTCAAAAGAG
AAAGGGAAGCTCTGAAATACTCTTCTGACGGAGCTTCCAGTTCCAATCCACACTACTCCTTTTGG
CAAGTATCATTGGATCGGTTCAATAATTCTAACGGGTAGCCTAGGAGGGGGAAAAGAATGAACAT
GTTAATCGTACTTCTTCCACACTCTGCACGGGCCGGGGCGAGTAGAAGCAGCACTGTAACGGGCA
CAAAAACTCTTGAATATCAGGGCAGGGGGCCTTCGGCCCCTTTAAAGGTGGGCCGAAGGCCCCCC
TGCCCATAGGGTCTGACCGAAGGGAAGACAACTCCGACCTTTAAA
Right flanking sequence: Indices 307532 -- 308031
CCTACACTCCCGATAGGGTCCGTTCAGGACAACTCCCGATAGGGTCCGTTCAGGACAACTCCGAC
CGATAGGGAGGAGTTGGAGTTGGACAAAAACAAACCGAACAAAAAACTCCACTATGAGTGCCAGA
CGACTTTCGATTATCAAACAACCCGTCTCTTCTACGCTTAACTAGCATTTGATAGATTATCCAAC
CCCGAGCAATCTGAGTCATTGGTGGGGTTTCGGTTCGTTAGCTGCTATTCGTTCAGTAATTTAGA
CCATTACCGGCGTTTTCCCAGCCATGCATTATACACCTCATGTCGATCCAGCTTTCCACAGCGTG
GAACACATTATGAGAGATGTAAAAGGAGGCTGGTTGCTTCGTTATATGCATGCCAATGGGGCTAG
TATGTTCTTCATTGTAGTTTATCTCTATTTCTTCCGTGGTTTATACTACGGAAGTTATACCAGTC
CTAGAGAATTTGTTTGGTGCCTTGGAGTGGTCATCTCACTATTAA
Found at i:307566 original size:26 final size:26
Alignment explanation
Indices: 307537--307593 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
307527 GTTGGCCTAC
307537 ACTCCCGATAGGGTCCGTTCAGGACA
1 ACTCCCGATAGGGTCCGTTCAGGACA
307563 ACTCCCGATAGGGTCCGTTCAGGACA
1 ACTCCCGATAGGGTCCGTTCAGGACA
307589 ACTCC
1 ACTCC
307594 GACCGATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (26 bp):
ACTCCCGATAGGGTCCGTTCAGGACA
Left flanking sequence: Indices 307037 -- 307536
GAGAAAGGGAAGCTCTGAAATACTCTTCTGACGGAGCTTCCAGTTCCAATCCACACTACTCCTTT
TGGCAAGTATCATTGGATCGGTTCAATAATTCTAACGGGTAGCCTAGGAGGGGGAAAAGAATGAA
CATGTTAATCGTACTTCTTCCACACTCTGCACGGGCCGGGGCGAGTAGAAGCAGCACTGTAACGG
GCACAAAAACTCTTGAATATCAGGGCAGGGGGCCTTCGGCCCCTTTAAAGGTGGGCCGAAGGCCC
CCCTGCCCATAGGGTCTGACCGAAGGGAAGACAACTCCGACCTTTAAAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAACTCCGACCTGTAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCCGTCTGGGTCCGAG
CGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGGCCTAC
Right flanking sequence: Indices 307594 -- 308093
GACCGATAGGGAGGAGTTGGAGTTGGACAAAAACAAACCGAACAAAAAACTCCACTATGAGTGCC
AGACGACTTTCGATTATCAAACAACCCGTCTCTTCTACGCTTAACTAGCATTTGATAGATTATCC
AACCCCGAGCAATCTGAGTCATTGGTGGGGTTTCGGTTCGTTAGCTGCTATTCGTTCAGTAATTT
AGACCATTACCGGCGTTTTCCCAGCCATGCATTATACACCTCATGTCGATCCAGCTTTCCACAGC
GTGGAACACATTATGAGAGATGTAAAAGGAGGCTGGTTGCTTCGTTATATGCATGCCAATGGGGC
TAGTATGTTCTTCATTGTAGTTTATCTCTATTTCTTCCGTGGTTTATACTACGGAAGTTATACCA
GTCCTAGAGAATTTGTTTGGTGCCTTGGAGTGGTCATCTCACTATTAATGATTGTGACTGCTTTT
ATAGGGTACGTACTACCTCGGGGTCAAATGAGCTTTCGGGGAGCT
Found at i:311289 original size:18 final size:18
Alignment explanation
Indices: 311248--311290 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
311238 GAGTTGGTCT
311248 AAGATTCGACGGAGGTAG
1 AAGATTCGACGGAGGTAG
* *
311266 AGGATTCGTCGGCAGG-AG
1 AAGATTCGACGG-AGGTAG
311284 AAGATTC
1 AAGATTC
311291 AGCAGGAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.30, C:0.14, G:0.37, T:0.19
Consensus pattern (18 bp):
AAGATTCGACGGAGGTAG
Left flanking sequence: Indices 310748 -- 311247
ATATTTTCTCAGGATGAGGCAAAACGCGTTAGCGTTTTGGGGGAAAACGCGTCCCGCGTTTTCCC
CCCGACAGCAAGAGTGCCATGGGTTTTGAATCTTGTTGGAATCCAAGACTCGGAAGAAGCGGAAG
GGCTTCGTTCACCAAGAATCGTTTGGCCAGAACCATGTAAACCGAACCTTTTTTCACCGGAACGA
TTAAACAAAAAAAGAGTTTGGATTGAACCAACCAGGATTTGGCGTGACCGTGAAAAAAGGGTCAA
AGGTTTTCTTCCTAATTCAATGAAAGGTGGGTATGCTGTAGCTGTCGCAGGGCCCGTAGCTCCTC
CTCCCAGGAGTCTTTTCCGCAGGCGTCGGGGATTCAGCGGAAATGGTAGATTCAACAGAAGCAGA
AGATTCGTATTCAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCTAAAGGCCCCCTGCCC
TCCGACAGGAGGGCAACAAATAATTCCGAAGGGAGGAGTTGGTCT
Right flanking sequence: Indices 311291 -- 311790
AGCAGGAATGGTTGGATAAAATTCAAGATTCTGAACATGAACCCGAAGGACTGGAATATCGTGGT
AGAAGCGATTTGTGCTGCGCCAACCTTTTCGAAGAGGAAAAAGCCGTGGTTACTTTAATCTAATT
TCATTGAAAATGAAAGGTTACTTAGGACAACAGCGCTTTTAAAAGGGCAGCCCTTTCTAAGGCTC
AAGCACCACTAGACTAAGCGTTTGCAGGGGGCGGCCGCAGCCTTCTAAGCACCAGCAGCAATCGT
ACCACCGGAAGTCTAACCAACAGCCTCCATTGCATCAATAGCCTCCGGCACCAGCAACAGCCTAT
TAAGCACTATTAGCAGCCTCTTAACTAGCAACAGCAACATTCTAAACATCAGCCTAGCAGCACCA
ATAGCCTCTCCTTAACCAGCCACCGCTGATGCAGCCGGCACCAGCAGCCTATTAAGCATTACCAG
AAGTTTTTCAAGAGTTTCTTACTAGGGAATACGCTGCTGCTTCTA
Found at i:312684 original size:20 final size:21
Alignment explanation
Indices: 312638--312687 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 21
312628 TATCGATGGG
312638 TGGGCAAGTCGGCCTAGCTTTCTT
1 TGGGCAAGTCGGCCTAG---TCTT
312662 TGGGCAAGTCGGCCTAG-CTT
1 TGGGCAAGTCGGCCTAGTCTT
312682 TGGGCA
1 TGGGCA
312688 GGCGGGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.35
24 17 0.65
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (21 bp):
TGGGCAAGTCGGCCTAGTCTT
Left flanking sequence: Indices 312138 -- 312637
GCGTGCGCTTAGTGAGGAGAAGCGGCTGCTGCTAACGGAAGCGCTTTACTTTAAAGTTGCTTTAA
TTTTCAATGAAATTAAATGAAAGGTTCTTTACCGACTTTTAAAAGGGCCCTTTTAAAAGGAGGAA
TGATGCTTTTTCTATCGGAATGAAGGATCTTAGCCTCCCTATCCATATGCAGTAGCTATGATTGC
GCCTCTACAGGAAAGGGGCGGGCTTGACGACCATCTCACCGAAGAAAGATGAACAGCTTCCGCCA
CTTTATAGCGCTCCCAACCTAACCGGATATGAAGGCAGGGAATATTCGGACTGACCCTCTATCGT
GGTCCTTGCACTATGAAGCCTGTTACGTAGGGATTAGCTAAATGGAAGCGGAGGTGCAGATCAAA
GGAAGTGGGCGGGTGCACGATTCCCATACTGGTGTGGGGCTTTTTTTCTCTCTTATCTCCCTCCA
CGAGAAGGAACGGAGAAGGCTTGAAGGAGAGTGCATATCGATGGG
Right flanking sequence: Indices 312688 -- 313187
GGCGGGACTAGCTCTGGGTCGGCCTAGCGGGCGCACAGTGCCTAGCTTTGGGCGAAGGCGGGACT
TGCTTTTTCTCCGGGCGAAGGCGCCGGGACTATAGCTTTGGGTTCGACCCCCTAAAGGGTATTTA
AAGGGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACAACTCCTCCCTAAGCCTTAGTCCCAGTTGATGATTTTCCGACAACTCTATCTGGCC
TTTCTAGAAAGCCGATTCTGCCCCTCGAGCAGACGATCTTGAACCCTCCTTCCTTCAGCCCTCTC
GCCGTAGCACCACCCCATCTCCACCACACAGAATCACGTAGATAGAAAGAGCCTCTGGAGCGGGA
TTGTTTCATGGGCGAAGCCGCCCCAATTCAATACACGATTGGCGCTATAGGGGATTGGTGAATGG
GGGATGGTGCTTGAGCTTGAGCGAAAGGGAAGGCGGGGTTGAGCG
Found at i:313488 original size:51 final size:51
Alignment explanation
Indices: 313419--313515 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
313409 GCCTTTTGAC
*
313419 TCCCCTTTTTTGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
1 TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
*
313470 TCCCCTTTTTCGCTTCCAGAGGGAGAATCGATGGATGCCAAAACCT
1 TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCT
313516 AACCTACACA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (51 bp):
TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
Left flanking sequence: Indices 312919 -- 313418
TGATGATTTTCCGACAACTCTATCTGGCCTTTCTAGAAAGCCGATTCTGCCCCTCGAGCAGACGA
TCTTGAACCCTCCTTCCTTCAGCCCTCTCGCCGTAGCACCACCCCATCTCCACCACACAGAATCA
CGTAGATAGAAAGAGCCTCTGGAGCGGGATTGTTTCATGGGCGAAGCCGCCCCAATTCAATACAC
GATTGGCGCTATAGGGGATTGGTGAATGGGGGATGGTGCTTGAGCTTGAGCGAAAGGGAAGGCGG
GGTTGAGCGAAAGGTTTCACAGGATGGTGCACCTTTTAAAAGGTCGCGAAAGGTGAGTGGGCCCA
TGTCCTGTTAGGTTGCTTGGGTGTGTTGTGTGGTGGCAGCAAATCCCGTAAATAGAAAGCTGGCT
ACGGCTAGCGAGCGGGAATCCGAAATGGCAGGCTTGGGCACTTTAATGCGCCGGTAAGTTACTTT
AATTTAATTTCATTGAAAATTAAGTTGAAAAAACCGCCTTTTGAC
Right flanking sequence: Indices 313516 -- 314015
AACCTACACACCGCTTTCATCGAAGATGGAATCCTTTACTCCCTATTGAGCGAACCATTCTGCAG
GGAGAGGGACTACGCCGATAGGCCCAATGGGAGGTTCACTAGCCACAAGAAGGCCTAACGGCGCC
TTCGACCCCAGTGACCTACCAGTTTAACGAAGGTAGAGGAGCTTCCGAGCCCTTCCACCAACTCT
GGCGGGCAATCGTCCCTTCACTGCCATCCCTTCATGAAAAATAAAGTAGCACCACCTTCCTCAGC
CAACCTCGGCCCTTGAATTATCGGGGAATCAGTAAATAAGTGAAAGCTCATTTTCACCCTTTTAA
ATTAAAGTCACGTACTTTAACGCAGCAGATTCAAGCTTTGGCGTCTTCTGCCTCCCCCTTGCCCG
ACAAAATTTCGTATAGATAGTACTTTGGTTCTCGAAAGCGAAGGGCAGGGGGGCGCGTTAGCGCC
CCCTTTCAAGGGCAGCCTGGCAGGCTGACCTGCCAAAGTCCAAGT
Found at i:314600 original size:41 final size:39
Alignment explanation
Indices: 314554--314645 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
314544 GATCGTGCAT
*
314554 AATCGTCTGATCTAAGGAAT-AATTGTCTCCCCCCTCCTCAG
1 AATCGTCTGATC-AA-G-ATCAATCGTCTCCCCCCTCCTCAG
* *
314595 AATCGTCTGATCAAGATCGATCGTCTTCCCCCTCCTCAG
1 AATCGTCTGATCAAGATCAATCGTCTCCCCCCTCCTCAG
314634 AATCGTCTGATC
1 AATCGTCTGATC
314646 GTTGGTCTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.04
39 31 0.66
40 2 0.04
41 12 0.26
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (39 bp):
AATCGTCTGATCAAGATCAATCGTCTCCCCCCTCCTCAG
Left flanking sequence: Indices 314054 -- 314553
TACTCTTACGGAGGCCTCGCTCTGTTGGACTAAGATTCTTCTGAGATTGGATCTTTGTCATTCAT
GTTAGTACTATGACCCGAAAACAGAGCGATCTGTATCATTGGGTATCAGCTTCGCACTCTTACCC
AGAGATTGGCGTAAATAATAAGCGGAGATTCTTCGACCTGCCGCTTCAGGGGAATAGTTCCAATG
GTAGAACAATGGTCTCCAAAACCAAAGGTTAAGGGTTCGAATCCCTTTTCTCCTGATTCACCTAT
TAGATAGTCCTTTCCCACTCTCACTACTAAGTGCTCCCGGCAGCTGAGCTTCCAGCCTAGCAATT
TGCACACGTGATTTAGCCGGCAAAGAGAAGACGCATCGATCGTCTCTGTCTTCGTCTGCCGGATC
TAGGGCTTTGGGTTATCGTCTGATCGCTCGCCGGGGCTAGGAGGATAATCGAATTCTGCTGAAGC
CTTTAAGAGCGTCTGCTTCTACGCAAACATCGTCTGATCGTGCAT
Right flanking sequence: Indices 314646 -- 315145
GTTGGTCTGGGGGATAGAATCGTCTTATCTGGGGGCTATAATCGAATTCTGCTCTAGGGTCCGAG
CGAAGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACAACCCCGACCTACCGGGAGGAGTTGGGGGAGTTGGGCATAATCGTCTGGTTGGAGG
TCTTTTGTTGTTTTTTGACATTTTTGCCTCGAACGCCCAGAAAGATCTGCCTAAGCCGCTTTTAA
AAGCGCGGCTCAATTCCACACAAGGACGTGTCCATGCCGGCAGCGCGCCACCCCTACGCTACGCG
TGCTCGACACCGCAGGTAACTATCATACGAAACCCGTAATCTCACCGGAGAACGGACCCCGGCAT
ATGAGGCTAACGTCCCCTCTCTGTCTCCACGTGCAGGTCCGTCGAGGCTACCCTGCTTCAACGAT
GGCTTCCCGCCGCATTGACGCTTTATGAGAGGGAAAAAAAGCTTC
Found at i:317340 original size:33 final size:33
Alignment explanation
Indices: 317288--317382 Score: 136
Period size: 33 Copynumber: 2.9 Consensus size: 33
317278 TACTTAGGGC
* * *
317288 GGAACTAGCTGAAAGGGATAAGGAACTTGAGGA
1 GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
*
317321 GGAACTGGCTAAAAAGGATAAGGAACATGAGGA
1 GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
* *
317354 GGGACTGGCTAAAAAGGATGAGGAACTTG
1 GGAACTGGCTAAAAAGGATAAGGAACTTG
317383 GCAGAGTTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.40, C:0.09, G:0.36, T:0.15
Consensus pattern (33 bp):
GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
Left flanking sequence: Indices 316788 -- 317287
ATGACTTCAACTTCACCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGACCGTCTTTGACA
GGATTCGAGCCCTATAAGTCTCCCCATTGCTTGTTAGTTAAGTGGGGAGAGAGAACTAGCCCCAT
CTCTTGATTACGAAGATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTC
CCCTAAAGGGAATGCCCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTT
CTTCTAATTCCTCTAGGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACC
ACCTTGGTTCAGGGCGGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGAT
GCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACC
CAAGGAAGTGATCGATATTGGTGAAGCAACCTATATACTTAGGGC
Right flanking sequence: Indices 317383 -- 317882
GCAGAGTTGGCTAAACTTAAGGAAGAAAAAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTC
CTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAAC
TCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTT
TTTTTCGATCCTTATTAAGGTACTCACTCGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGT
AAAGGCAAGGATCAACAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAG
GAAGAAAGGACCGGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTA
ATAGGAAGAAAGGACCATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTC
ACAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTACGCTC
Found at i:317397 original size:31 final size:33
Alignment explanation
Indices: 317303--317397 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 33
317293 TAGCTGAAAG
* *
317303 GGATAAGGAACTTGAGGAG-GAACTGGCTAAAAA
1 GGATAAGGAACATGAGCAGAG-ACTGGCTAAAAA
* *
317336 GGATAAGGAACATGAGGAGGGACTGGCTAAAAA
1 GGATAAGGAACATGAGCAGAGACTGGCTAAAAA
* * *
317369 GGATGAGGAACTTG-GCAGAG-TTGGCTAAA
1 GGATAAGGAACATGAGCAGAGACTGGCTAAA
317398 CTTAAGGAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
31 8 0.15
32 4 0.07
33 42 0.76
34 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.36, T:0.16
Consensus pattern (33 bp):
GGATAAGGAACATGAGCAGAGACTGGCTAAAAA
Left flanking sequence: Indices 316803 -- 317302
CCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGACCGTCTTTGACAGGATTCGAGCCCTAT
AAGTCTCCCCATTGCTTGTTAGTTAAGTGGGGAGAGAGAACTAGCCCCATCTCTTGATTACGAAG
ATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTCCCCTAAAGGGAATGC
CCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTTCTTCTAATTCCTCTA
GGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACCACCTTGGTTCAGGGC
GGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGATGCTAAGTTGAACACT
AAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACCCAAGGAAGTGATCGA
TATTGGTGAAGCAACCTATATACTTAGGGCGGAACTAGCTGAAAG
Right flanking sequence: Indices 317398 -- 317897
CTTAAGGAAGAAAAAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTGACCTGGCAGTGC
CAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAA
TTCGGAGTTGTCCTCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTAT
TAAGGTACTCACTCGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAAGGATCAA
CAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAGGACCGGA
TCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAGGAC
CATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCC
CCTATCGGGGGTAAGTGGCTCGCTACGCTCGCCCGAATTGCGTAT
Found at i:317501 original size:46 final size:46
Alignment explanation
Indices: 317418--317541 Score: 227
Period size: 46 Copynumber: 2.8 Consensus size: 46
317408 AAAAAGGCCG
317418 GCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTGACCTGGCAGT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
317461 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
317507 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCT
317542 CCTGTCGGAG
Statistics
Matches: 78, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
43 19 0.24
46 59 0.76
ACGTcount: A:0.16, C:0.34, G:0.23, T:0.27
Consensus pattern (46 bp):
GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
Left flanking sequence: Indices 316918 -- 317417
CTCTTGATTACGAAGATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTC
CCCTAAAGGGAATGCCCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTT
CTTCTAATTCCTCTAGGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACC
ACCTTGGTTCAGGGCGGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGAT
GCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACC
CAAGGAAGTGATCGATATTGGTGAAGCAACCTATATACTTAGGGCGGAACTAGCTGAAAGGGATA
AGGAACTTGAGGAGGAACTGGCTAAAAAGGATAAGGAACATGAGGAGGGACTGGCTAAAAAGGAT
GAGGAACTTGGCAGAGTTGGCTAAACTTAAGGAAGAAAAAGGCCG
Right flanking sequence: Indices 317542 -- 318041
CCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTATTAAGGTACTCACTC
GAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAAGGATCAACAAGCAGCCTTGGA
ACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAGGACCGGATCAACAAGCAGCCT
TGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAGGACCATCTTAGGGTAGA
CCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCCCCTATCGGGGGTAA
GTGGCTCGCTACGCTCGCCCGAATTGCGTATGTATATAGGAACAGTGCAGGGAAAGGCCTTCAAA
AATGGCAGTGGTAAGACTTGTATGCCCTTGCCTCACTGGGTGGCCTATTTCCCTCTCCTTCAGAT
GGGCAAGAGGTTAGCGCGGGGCAGAGGCGGGAGGGGAAAGCAGAG
Found at i:317728 original size:69 final size:69
Alignment explanation
Indices: 317651--317788 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
317641 GTAAAGGCAA
* *
317651 GGATCAACAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAG
1 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
317716 GACC
66 GACC
317720 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
1 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
317785 GACC
66 GACC
317789 ATCTTAGGGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (69 bp):
GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
GACC
Left flanking sequence: Indices 317151 -- 317650
TACCTAGCAGTGTAAGCCTTTAAAGATGCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGA
TAAGGGAGAATGGGTTGGCACTGAACCCAAGGAAGTGATCGATATTGGTGAAGCAACCTATATAC
TTAGGGCGGAACTAGCTGAAAGGGATAAGGAACTTGAGGAGGAACTGGCTAAAAAGGATAAGGAA
CATGAGGAGGGACTGGCTAAAAAGGATGAGGAACTTGGCAGAGTTGGCTAAACTTAAGGAAGAAA
AAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTA
TCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCC
TCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTATTAAGGTACTCACT
CGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAA
Right flanking sequence: Indices 317789 -- 318288
ATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCCC
CTATCGGGGGTAAGTGGCTCGCTACGCTCGCCCGAATTGCGTATGTATATAGGAACAGTGCAGGG
AAAGGCCTTCAAAAATGGCAGTGGTAAGACTTGTATGCCCTTGCCTCACTGGGTGGCCTATTTCC
CTCTCCTTCAGATGGGCAAGAGGTTAGCGCGGGGCAGAGGCGGGAGGGGAAAGCAGAGACTCGGG
TAGTATTCGCCTTCAGCCTCCGAAGGGCTTCAAACGTGTAGCCCTGGCCTAAGTAACTTAATTTT
CAATGAAATTAAACTAAAGTAACTTAGGCTTTCGTTAATTTACGATCTTTAATTTTAACCTTTTA
AAAGTATCGTAAATTAACGAAAGCCTAAGTTACTTTAGTTTTAAAAGGGATTCGAAGAATCCCTG
TTCATTAATCGAAATAATTTCGTATATAGAACTTTAAAGTGCTTC
Found at i:319080 original size:24 final size:21
Alignment explanation
Indices: 319043--319109 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 21
319033 CATTATTCGA
319043 CTAATTTTAAATTAATGAACC
1 CTAATTTTAAATTAATGAACC
*
319064 CTAATAGCTTTCAATTAATGAACC
1 CTAAT---TTTAAATTAATGAACC
319088 CTAATTTTAAATTAATGAACC
1 CTAATTTTAAATTAATGAACC
319109 C
1 C
319110 GTATAGGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 21 0.51
24 20 0.49
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (21 bp):
CTAATTTTAAATTAATGAACC
Left flanking sequence: Indices 318543 -- 319042
CGGGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGAGGAC
AACTCCGACCTACCGGGAGGAGTTGGGGGACAACAAATGATTCCGCCTTTAAAGAGGAGTTGGAA
ATGGGGTTATGGAAAATGTTTGAGAATCCATTCATGGGGTGCCGGGAAAATGAGGTCGATGCCTT
TTCCCACGTAGCGAGTAGCCAGTTTCTCCGATGCAGCAGTTTCAGTAGCCCCAGCAGCAGAAGCA
GCTGTAGTTTCAGTTTCAGTCCCAGCAGAGTTCGCCCCAGCAGTAAGAAATTTCATTTTCAATGA
AATTCAATGAAAGGTTCTTTACGCTTCCGCTGGCGCACTTAAATAGCGCCACTAAACCACAACTA
TTGGCGCGGGCAGTTCTCTCTTCTTGCCCACCCACTCACACGCAGGCGGGCACTCTTCTTCAAAA
GGGTGGGGTGCCGGGGGAGGGGGACCCTCGCACCTCATTATTCGA
Right flanking sequence: Indices 319110 -- 319609
GTATAGGCTCGGCTTAGGCGGCCTAGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGC
GCTATACGCGCGCTGACACGTGCCCGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAA
AGCATCCCACCTGAGTGTGCTGCACTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCT
GTGCGGTGTGCGCCCAACCCCTTCCCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGA
GCCCTAAACTAGCCCAGCACATAAGTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGA
ATATGGGGTGTGGGGCCCCGGATCTTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTC
ACCTTCTTCGTAATCTCCGTCCCCAACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTTTGGAG
AGTTTCCATTCGAATGCTGTGGAGAGTTTCCATTTGAATGCTGTG
Found at i:319592 original size:24 final size:24
Alignment explanation
Indices: 319560--319613 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
319550 GGTTCCTCTT
319560 TGGAGAGTTTCCATTCGAATGCTG
1 TGGAGAGTTTCCATTCGAATGCTG
*
319584 TGGAGAGTTTCCATTTGAATGCTG
1 TGGAGAGTTTCCATTCGAATGCTG
319608 TGGAGA
1 TGGAGA
319614 AAATCCATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.33
Consensus pattern (24 bp):
TGGAGAGTTTCCATTCGAATGCTG
Left flanking sequence: Indices 319060 -- 319559
AACCCTAATAGCTTTCAATTAATGAACCCTAATTTTAAATTAATGAACCCGTATAGGCTCGGCTT
AGGCGGCCTAGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGCGCTATACGCGCGCTG
ACACGTGCCCGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAAAGCATCCCACCTGAG
TGTGCTGCACTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCTGTGCGGTGTGCGCCC
AACCCCTTCCCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGAGCCCTAAACTAGCCC
AGCACATAAGTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGAATATGGGGTGTGGGG
CCCCGGATCTTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTCACCTTCTTCGTAATC
TCCGTCCCCAACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTT
Right flanking sequence: Indices 319614 -- 320113
AAATCCATTGCTAAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTA
TCGGATTATTCATCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCAT
ATGCATTCACCCCTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGA
GGAAACAGTCACGGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCC
CCCGTAGGAAAACGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGG
TGGGGTGCGCCCTCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTC
CGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTG
Found at i:319620 original size:24 final size:24
Alignment explanation
Indices: 319569--319622 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
319559 TTGGAGAGTT
***
319569 TCCATTCGAATGCTGTGGAGAGTT
1 TCCATTCGAATGCTGTGGAGAAAA
*
319593 TCCATTTGAATGCTGTGGAGAAAA
1 TCCATTCGAATGCTGTGGAGAAAA
319617 TCCATT
1 TCCATT
319623 GCTAAGTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (24 bp):
TCCATTCGAATGCTGTGGAGAAAA
Left flanking sequence: Indices 319069 -- 319568
AGCTTTCAATTAATGAACCCTAATTTTAAATTAATGAACCCGTATAGGCTCGGCTTAGGCGGCCT
AGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGCGCTATACGCGCGCTGACACGTGCC
CGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAAAGCATCCCACCTGAGTGTGCTGCA
CTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCTGTGCGGTGTGCGCCCAACCCCTTC
CCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGAGCCCTAAACTAGCCCAGCACATAA
GTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGAATATGGGGTGTGGGGCCCCGGATC
TTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTCACCTTCTTCGTAATCTCCGTCCCC
AACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTTTGGAGAGTT
Right flanking sequence: Indices 319623 -- 320122
GCTAAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTATCGGATTAT
TCATCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCATATGCATTCA
CCCCTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGT
CACGGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGA
AAACGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCG
CCCTCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACA
ACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCA
CTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGTCCTCCGA
Found at i:320183 original size:34 final size:35
Alignment explanation
Indices: 320126--320210 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 35
320116 CCTCCGACAG
*
320126 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
320161 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
320195 GAGGACCACTCCGACC
1 GAGGACCACTCCGACC
320211 TACCGGGAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 32 0.65
35 17 0.35
ACGTcount: A:0.29, C:0.31, G:0.31, T:0.09
Consensus pattern (35 bp):
GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
Left flanking sequence: Indices 319626 -- 320125
AAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTATCGGATTATTCA
TCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCATATGCATTCACCC
CTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGTCAC
GGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGAAAA
CGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCGCCC
TCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACAACT
CCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGTCCTCCGACAG
Right flanking sequence: Indices 320211 -- 320710
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCC
TTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCC
CTGGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTT
CTTCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAA
ACTGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTG
GGTTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCT
CTGTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGC
TAGGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAAACCC
Found at i:320309 original size:24 final size:26
Alignment explanation
Indices: 320278--320342 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
320268 GTACTTCCTT
320278 CCCTCTCTTCCCTAGGGTAGAGGAAA
1 CCCTCTCTTCCCTAGGGTAGAGGAAA
320304 CCCTCTCTTCCCTAGGGTAGAGGAAA
1 CCCTCTCTTCCCTAGGGTAGAGGAAA
320330 CCCTCTCTTCCCT
1 CCCTCTCTTCCCT
320343 GGAACTCTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.37, G:0.18, T:0.26
Consensus pattern (26 bp):
CCCTCTCTTCCCTAGGGTAGAGGAAA
Left flanking sequence: Indices 319778 -- 320277
CTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGTCACGGTCTGTACTTATCTAAACCCC
ACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGAAAACGCGTAGCGTTTTCCTGGGCCC
TCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCGCCCTCACTTGGCCTCGCCTCCTTTC
CCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACAACTCCGACCCTCTCCCTATCGGTCG
AGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGT
GGGGGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACC
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCCTT
Right flanking sequence: Indices 320343 -- 320842
GGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTTCT
TCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAAAC
TGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTGGG
TTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCTCT
GTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCTA
GGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTATCTTCCCTGGGGTAAAGGAA
ACTCTCTCTTCTCTAGTTGAGGGAGAGGGAACCTTTAGCGGCAGGGAGAGGAAACCTCTAGCGGC
AGGGAAGGGAAACTTTCCTTCCCTCGGGAAAGGAAACCCCTCTTC
Found at i:320725 original size:26 final size:26
Alignment explanation
Indices: 320665--320748 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
320655 TCTTCCTTAG
*
320665 CTAGGGTGAAGGAAATTCCCTCTCTTCC
1 CTAGGGTAAAGGAAA--CCCTCTCTTCC
* *
320693 CTAGGGTAGAGGAAACCCTATCTTCC
1 CTAGGGTAAAGGAAACCCTCTCTTCC
* * *
320719 CTGGGGTAAAGGAAACTCTCTCTTCT
1 CTAGGGTAAAGGAAACCCTCTCTTCC
320745 CTAG
1 CTAG
320749 TTGAGGGAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 34 0.72
28 13 0.28
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (26 bp):
CTAGGGTAAAGGAAACCCTCTCTTCC
Left flanking sequence: Indices 320165 -- 320664
ACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGG
AGTGGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCCTTCCCTCTCTTCCCTAGGG
TAGAGGAAACCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCTGGAACTCTCTTCCCTAG
GGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTTCTTCCCTTCTTTCCCGGGA
AAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAAACTGTTGGTGCCGAAAGTG
TTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTGGGTTGTGAAGTGCCTGACA
CGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCTCTGTAGGGCTGGCGATGGG
GCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAG
Right flanking sequence: Indices 320749 -- 321248
TTGAGGGAGAGGGAACCTTTAGCGGCAGGGAGAGGAAACCTCTAGCGGCAGGGAAGGGAAACTTT
CCTTCCCTCGGGAAAGGAAACCCCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCTCCTTCCCTTC
TCTCTCTTCCCGCTGGGTAGAGCAAACTCCCCTCCAGCAGACAATCGGACGGTAATCAGACGGTA
AGACGAGAGATTGGACAATTAGACGAGAGGATGGGACGATAACTCCAAGAAGACGAGAGATACCT
CTCCCAGCGGGTAAAGGAAAGGGAAGGGGAGGCTTTCTCTTCCGGTGCTTGGGAACTGATTCAAC
GTCGACTGATAAGCACTGCTGATGGCAATTAGAACCGCTGTTGAGGACACTGGAATCAGCCCTTT
TAAGGGTTATGAAATTGTCGTGCACTGTAGAAATGGGTGCGCCCTTTTAATTCCTTCACGAGTTT
CCTAGTTAGGATTACATCCAAGACGTCCTGAATTCAACTAATTTT
Found at i:320782 original size:23 final size:23
Alignment explanation
Indices: 320752--320813 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
320742 TCTCTAGTTG
320752 AGGGAGAGGGAACCTTTAGCGGC
1 AGGGAGAGGGAACCTTTAGCGGC
* *
320775 AGGGAGAGGAAACCTCTAGCGGC
1 AGGGAGAGGGAACCTTTAGCGGC
*
320798 AGGGA-AGGGAAACTTT
1 AGGGAGAGGGAACCTTT
320814 CCTTCCCTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.31, C:0.16, G:0.40, T:0.13
Consensus pattern (23 bp):
AGGGAGAGGGAACCTTTAGCGGC
Left flanking sequence: Indices 320252 -- 320751
ATCAGCCCATTCCCCGGTACTTCCTTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCT
AGGGTAGAGGAAACCCTCTCTTCCCTGGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTA
GCTAAGGGAAAGGACCTTCCCTTTCTTCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAA
TAACTTGGCACTGGTGGAACCGAAACTGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGC
TTTCGGCCTTGTAGGCGATGTTTGGGTTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAA
TTGCTTGCTCCCGAAACAAGGCCTCTGTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAAT
GAGAAGGAAACTCTCTTCCTTAGCTAGGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAA
ACCCTATCTTCCCTGGGGTAAAGGAAACTCTCTCTTCTCTAGTTG
Right flanking sequence: Indices 320814 -- 321313
CCTTCCCTCGGGAAAGGAAACCCCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCTCCTTCCCTTC
TCTCTCTTCCCGCTGGGTAGAGCAAACTCCCCTCCAGCAGACAATCGGACGGTAATCAGACGGTA
AGACGAGAGATTGGACAATTAGACGAGAGGATGGGACGATAACTCCAAGAAGACGAGAGATACCT
CTCCCAGCGGGTAAAGGAAAGGGAAGGGGAGGCTTTCTCTTCCGGTGCTTGGGAACTGATTCAAC
GTCGACTGATAAGCACTGCTGATGGCAATTAGAACCGCTGTTGAGGACACTGGAATCAGCCCTTT
TAAGGGTTATGAAATTGTCGTGCACTGTAGAAATGGGTGCGCCCTTTTAATTCCTTCACGAGTTT
CCTAGTTAGGATTACATCCAAGACGTCCTGAATTCAACTAATTTTCAATTCATTGAAAATTCATT
GAATTTAGACGCTTTTAAGGGGTCAAAAAAGCAGGTTTAATTGAA
Done.