Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065260
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 369673
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 2 of 4
Found at i:115529 original size:36 final size:39
Alignment explanation
Indices: 115475--115585 Score: 147
Period size: 36 Copynumber: 2.8 Consensus size: 39
115465 CCCAAGGGCC
115475 CTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGG
1 CTCCGATAGGA--GCAACTCCGACCGATAGGGAGGAGTTGG
115516 -TCCGA-AGGA-CAACTCCGACCGATAGGGAGGAGTTGG
1 CTCCGATAGGAGCAACTCCGACCGATAGGGAGGAGTTGG
115552 CCCTCCGATAGGAGGGCAACTCCGACCGATAGGG
1 --CTCCGATAGGA--GCAACTCCGACCGATAGGG
115586 TCCGAACGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
36 27 0.43
39 9 0.14
40 9 0.14
43 18 0.29
ACGTcount: A:0.25, C:0.25, G:0.36, T:0.14
Consensus pattern (39 bp):
CTCCGATAGGAGCAACTCCGACCGATAGGGAGGAGTTGG
Left flanking sequence: Indices 114975 -- 115474
AAGCGTGAGACCATAGCATGTTACAAAAGCGCGGTTGGGGGTTAAGAAATGAAGAGCACCGCGCG
AACTCTATAGTGTCACACGAGATAAGCCCTTAGCCTGGCGAATCGAAGTTCTATTCTTTCTGGTT
AACTGGCCACTTGGTTAACAACCCATGCTACAAGCACGGTGGGAACGCGCGAACGCACGCTGGTG
TGCTTCCTGCCTGTCGAGGTTAAACAGCGACAAGGTTCAGATTGGAGGAGCTGGAAACAGCTGCA
TGGGAGCCGCCCAACTCTTTGGGTACAATTAACGGAACGATATCTTGATACACCAAAACCATAGG
CTTATCGGCGAGATCCAACGGTGGACTGGATCCCCTATGGAAGTCATAGGACCTTTAGTACCCAC
CCAGCGCTTCGCGCCACTCCGGCCTTTATTCCAATATTGTCCCACGAGTTTTAATGGCTCGAAGG
CTCGAAAAAAAACCGAAGGGCCCTTTAAAAGTGCCCCCAAGGGCC
Right flanking sequence: Indices 115586 -- 116085
TCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGT
CCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTC
CGACAGGAGGACAACTCCGAATTCCGATAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGCCAGGGGAGCGCATAGCGCTCCCCTGGCCGGGCCCTGTGCCTTTA
AACGCCCCGGCACCACCACCCATAAATGGGTGGTTAGGGGAGTGCCGGCAGGCCAACTCCTTTAA
ACCCCACACCACCCATGAAGTGGTGGGGTTTAAAGGAGTTGGGGTTTCCGTTAGGAAACCCCCCC
TGCCCCACCACCATCGGGTGGGGCGCGGTGCCTGCCCCTCCATAA
Found at i:118226 original size:34 final size:34
Alignment explanation
Indices: 118188--118277 Score: 171
Period size: 34 Copynumber: 2.6 Consensus size: 34
118178 TCCCACTCCT
118188 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
118222 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
*
118256 CCCTTCGGTCGGAGTTGTCCTC
1 CCCTTCGGTCGGAGTGGTCCTC
118278 CGGACCCTGG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.08, C:0.33, G:0.29, T:0.30
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 117688 -- 118187
AGGGAAGCGAGGCGCCGAGAAATGGCGCGAAGCGCCCGCCGCAGGGCTAGGTGGTTCGAAGGGGC
TAGCTTTCCACAAAGGTCTTAGCTTCCCCCGCCTAATAACGGCAGGGTAGCGCTACGCGCTACCC
GCGGGGGGTGCGGAGCACCCCCCTGCCCGCCGCGCCCCCCCATAGCTCATGAAAGGGCTACGTAG
CGATGGATGGCAGAGGGTCCGTAGTACCCGCCTACCCGAAAGGGACCAGGTGAAGCACTGGAGTA
GTGATCCAGTAGCCGGGAAGGGGCCTGAGTAAAAGCCTTGATAGGCGGCTATACTCTACACATTC
ACAAAGCTCAAACCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGT
CGGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGGCGCTACCGGCAGGTTTTCGCGCG
TAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 118278 -- 118777
CGGACCCTGGCAGGGTCCTCCGACAGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCG
ATAGGACAACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGG
GGGCGCGTAGCGCCCCCTGCCCCTGACCCAGGTTCCATGACACCAAGACCAGACGGTTATACCAT
CGAAGGTGGTACGTCGCTAGAACAGCTGAAAAGTATGCAAGGCAGAACCGGTTTTGGTGGGGGAC
TAACGCGTTTCCCCCCGTGGTGGTCCAGTGGGGAGGGGGATCTCAGTGGGGGTGGAGCCGGGATT
TAAATTAATTTAATTTACAAAACCGGTAAGAGGAAGAAGCAAGAGGGCAGGTAGCTTCGCGCCCC
CTTCATGAATCCATGCCACCTTTAGGTTCACCCCCCGGAAAACGCGCGAAGCGCGAGTAGTATGC
GCGGCCACCCTGCTGCGCCCCTTCTCTCTCAAAAGGGGAAGCGCG
Found at i:122167 original size:9 final size:9
Alignment explanation
Indices: 122153--122181 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
122143 GAATCATGCC
122153 CCAACTCCT
1 CCAACTCCT
122162 CCAACTCCT
1 CCAACTCCT
122171 CCAACTCCT
1 CCAACTCCT
122180 CC
1 CC
122182 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 121653 -- 122152
CGACCTTTCCGAGAGACTCTTGTTGACTGTAGGCCGGCTACATCGACTCTTTCGAGAGCTAGCTA
GTTAGTGTTTTCTAACGAAAGCGCCTACGTACTACATCGACTTCTCTGATATTTCAGCCTAGGGT
TCTCACCCACTCCTAGCCCACATTAGTGCCGAAGGCCTTCAGGCACGTACTTTGCATTTATGCTA
GCTCCTTTTTCCCCTTCTTTTTGAGGAAGCCAGCCCTGAGGAAATTCAAAGGTCGTCTCTCCGGA
AAGCTTTTTACTGGAGGCCAGCTGTATGCGAGTAGCTGAGATTTTACTGAATGGGAGTGCCCGCT
TTCAGTCGAGTGTCTTAGGCTTAAATGGGCCACCACTCGCCCTTTAGGGGAGTGGGACGCAGCCA
GAATCATCCTCTCCTTTCAGTCGAGTGTCTGGCTGGTGGTGGGTGGTGGACCCGGGGAGGGCACT
AGAGGTTGACCGGCAGCGCGTAGCGAAAAAGTCGAGAATCATGCC
Right flanking sequence: Indices 122182 -- 122681
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGAATTCGGAGTTGTCCTCGCCTCGGAC
CCTTCGGTCCCTTCGGGCCAACTCCTCCCTAGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCGGG
CCCTTTAAAGTGGCACTTTAATTTCATTGAAATTAGATTAAAGTAACGCTTTAAAAGGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCC
GTCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGA
GTGGTCCTATCGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGG
GGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
Found at i:122867 original size:35 final size:35
Alignment explanation
Indices: 122823--122891 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
122813 GCGGTTAATC
122823 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
122858 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
122892 CAGCGGCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 122323 -- 122822
TTCGGGCCAACTCCTCCCTAGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCGGGCCCTTTAAAGT
GGCACTTTAATTTCATTGAAATTAGATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGG
ACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAAC
CTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATC
GGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGG
CCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTTAATTTTCAATGAAATTAAAG
TAAAGTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 122892 -- 123391
CAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGGTTCGGGGTCCGAACCCGT
ACTTTAATTTAATTTAATTTAAACGTACGTTTTTAGCCTTAAATTGAATTGAAACTAAATTAAAG
GTTCTTTAAAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTT
GGTCCGAGGCGAGGACAACTCCGACCGCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGG
AGGAGTTGGGGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCTGACCTACC
GGGAGGAGTTGGGGGAGTTGGTCCCCCCTTCTCTCTCTCCCGAAC
Found at i:123250 original size:29 final size:31
Alignment explanation
Indices: 123217--123276 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 31
123207 GGGGGGAGTT
123217 GGTCCGA-G-GCGAGGACAACTCCGACCGCG
1 GGTCCGACGAGCGAGGACAACTCCGACCGCG
123246 GGTCCGAGCGAAGCGAGGACAACTCCGACCG
1 GGTCCGA-CG-AGCGAGGACAACTCCGACCG
123277 AAGGGAGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 7 0.26
31 1 0.04
33 19 0.70
ACGTcount: A:0.23, C:0.33, G:0.37, T:0.07
Consensus pattern (31 bp):
GGTCCGACGAGCGAGGACAACTCCGACCGCG
Left flanking sequence: Indices 122717 -- 123216
GTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTTAAAG
CGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATT
AAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAACCTCAGCGGCCTTTTAAAAGTCG
CTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCT
TAAATTGAATTGAAACTAAATTAAAGGTTCGGGGTCCGAACCCGTACTTTAATTTAATTTAATTT
AAACGTACGTTTTTAGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTT
Right flanking sequence: Indices 123277 -- 123776
AAGGGAGGAGTTGGGGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCTGAC
CTACCGGGAGGAGTTGGGGGAGTTGGTCCCCCCTTCTCTCTCTCCCGAACCCTCTCTCTTATCCC
CCCTCCCCCCCTCACCTTGCCCCACCTGCGTAGGACTCCTTAGGTAAGCAAATCTCTTCAATTTA
GTAAATAGAATGAGATTCTTTCGATGGGATCGAAAAACCTCTCGCCCAAGGTGCTTCTACGGAAG
CCGGTCACCGATTGGCTAAGAACCTATCGCTCAGAATTTGCTCATTTTTCCGGGGAGGGTGTCCT
TTGGGACACCTCGATAACTCAAGGGTCAGGGAAGCGCTACGCGCTTCCCTAGGGCGGCCGCCCTG
TCCGGACGAAGTGAGGACAACTCCCCGGGGAGTTGGGGGAAGCTTTTTATTATTATTATTATTAT
TATTCCGAATACATACCCTTCTGGATTGACCCGCGTCCCTTCATT
Found at i:126405 original size:30 final size:30
Alignment explanation
Indices: 126370--126451 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
126360 GGAGAGGGAT
126370 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
1 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
126400 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
1 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
*
126430 GAAAGGAAACCCTCTCTCCCCT
1 GAAAGGAAACCCTCTCTTCCCT
126452 CTCTTCCTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.20
Consensus pattern (30 bp):
GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
Left flanking sequence: Indices 125870 -- 126369
GAATGGATCTTGATAAAGTCACTCAATTTGCTGCCAGCGTCAAAAGTTGTAAACCCCCCGAAGTT
TATAAAGGGAGAGGTATACGGTATCAGAACGAAGTTATACAAAAGAAACCGGGAAAGAAGAAGCA
AATCATGTCATATATTCTAGGAACCAGATCGGTTTCCGGTAAACAAGTCAGAATTGCCTCGGTTT
CAATCTCTGGGACTGGACCCAAAAGAGCCGTTAAGGTTTGTGATCAATTGGGTATCAGTGATAGC
ATTAAGGTTCATGAGTTGACTAAGCATGAAATTGACAAAGTTCTCGGAATAATACGTAGAAAGCA
TTTTTTGGTTGATTCAGAATTGAAAAGAGAGATCAAGCCAAATACTAAACGATTGATTAGTATTA
GTTGTTACCGCGGATTCCGTCACAAAGCGGGATTGCCGTTACGCGGTCAACGAACTCATACTAAT
GCTAAAACTTGTCGCGTCGCGACTTTTAAAAGGGCGGAGAGGGAT
Right flanking sequence: Indices 126452 -- 126951
CTCTTCCTCCCCGCCTCTCATTTCGTTATGCGTTATGAGTTTGAATCAAAGAAGAAGCCCTTAAA
GGTCCAGCCAATTAAAAGTCTGAATTCAACTAATTTTCATAGTTGAACTTTGACTTTTAAGTCGA
AAATTAATTGACTTTAGACTTTAACGAGTTGGAGGACTTTTAAAAGCCCGATTTCCTATTCTGTT
ACAGTCCCCATAGGGTCCGAAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCTCTAACCAGAAAACTCGAACATACGG
GTAGGGGCAGGTGGTGCGGCAGGCACCCCCTGGGTTAGCTAGGGGGCTACCCTGGCCCGGGAAGG
GAGTGGGGGGGCTTTAAAGCGAGAGAGAGGAGAGTGGGAAGGCCC
Found at i:127891 original size:34 final size:34
Alignment explanation
Indices: 127850--127914 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
127840 GCTTTAAAAG
127850 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
127884 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
127915 TACCGGGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.32, T:0.09
Consensus pattern (34 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Left flanking sequence: Indices 127350 -- 127849
AAGCCCTTGCAGCAGGTGGACGGCGAACTCAACTGCGATCTGTCACCTATAGGGCAGGGGGGCGA
GCTTGCGAGCCCCTTTAAAGGTCAGCCTTAGGGCTGCCCTGCCCAGCGCACCGTAAGGCCCCGGC
AGCCAGGTCATGGACCAGTACCACATTTTTCTTAGCGGGGGGAGGGAAAGAGTCGGCAAATCGTC
TGCTGTTTTTGTGTGGTGCGGCTCGCCCGTCTGTTTCTGTAGAAAGAAATATTCCAAACTACTTT
GACCCACGTAGGCGAAGCACTCTAAGTGCGCGTAGCGGCAGGCTTCGCCTTCGGCCTGCTGCTCC
TGGCTCTGCTTCCAGCTCACCCTTTTCCCAGTTCGCGAAAGACTAAGGTAGCCCGGCCAATCAAG
AATAGATAGGGCGGGGATGAGCGCTTTAAAAGGATCAATCTTTTTTGTCTAGGGTCCGAGCGACG
CGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAG
Right flanking sequence: Indices 127915 -- 128414
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCTATTCTTCTCGGGTGCCTCCGATTCTTTCC
CTTCTCGATCTAAAGCCTCTAGGCCCACACCTCCACATTCAGGTAATAGCCATTTCCTTCTCCCA
ACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCCGCCTACCTGGGGCTAGCCGTTCC
TTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTGAATTGAATTTAATCGCACCTTTT
AATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCAAGAGACC
ACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTATTAGTGC
CAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCGGCTAGTA
AGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATTTCT
Found at i:128333 original size:26 final size:26
Alignment explanation
Indices: 128301--128381 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
128291 CGCGGTATTA
*
128301 GTGCCAGCCAAAGCGGCCAGTAAGTG
1 GTGCCAGCCAAAGCGGCTAGTAAGTG
128327 GTGCCAGCCAAA---GCTAGT-AGCT-
1 GTGCCAGCCAAAGCGGCTAGTAAG-TG
128349 -TGCCAGCCAAAGCGGCTAGTAAGTG
1 GTGCCAGCCAAAGCGGCTAGTAAGTG
*
128374 ATGCCAGC
1 GTGCCAGC
128382 ACTTAAGGGC
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
21 11 0.23
22 2 0.04
23 6 0.13
24 7 0.15
25 2 0.04
26 19 0.40
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (26 bp):
GTGCCAGCCAAAGCGGCTAGTAAGTG
Left flanking sequence: Indices 127801 -- 128300
GACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTG
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGG
AGGAGTGGGGGGAGTTGGCTATTCTTCTCGGGTGCCTCCGATTCTTTCCCTTCTCGATCTAAAGC
CTCTAGGCCCACACCTCCACATTCAGGTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGA
CGCGGAGCAGGGTACGATAAAGCCCCGCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATT
ATTTCCTTACCCGAGGAATTGAATTGAATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGA
ACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTT
GCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTATTA
Right flanking sequence: Indices 128382 -- 128881
ACTTAAGGGCCCAACGTACTATCTACCATTTCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCG
CTACGCGCTTCCACTTGTGAAGTTCACCCCACCACCAACCAACAGAAGCGAAAGCCCTTGCGCAC
TGGGTTTCTTGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAA
GTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGG
TCCTACGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGT
TGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAA
Found at i:128604 original size:69 final size:70
Alignment explanation
Indices: 128522--128664 Score: 261
Period size: 69 Copynumber: 2.1 Consensus size: 70
128512 TGGGTTTCTT
128522 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
128586 ACTCC
66 ACTCC
* *
128591 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
128656 ACTCC
66 ACTCC
128661 GACC
1 GACC
128665 GAAGGGAGGA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 40 0.56
70 31 0.44
ACGTcount: A:0.27, C:0.34, G:0.29, T:0.10
Consensus pattern (70 bp):
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
ACTCC
Left flanking sequence: Indices 128022 -- 128521
GTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCC
GCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTG
AATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGC
CGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGT
TGATAGAGCCGCGGTATTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAG
CTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATT
TCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCC
ACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTT
Right flanking sequence: Indices 128665 -- 129164
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAG
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
Found at i:128610 original size:35 final size:35
Alignment explanation
Indices: 128522--128664 Score: 261
Period size: 35 Copynumber: 4.1 Consensus size: 35
128512 TGGGTTTCTT
128522 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
* *
128557 GACCGA-AGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
128591 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
128626 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
128661 GACC
1 GACC
128665 GAAGGGAGGA
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
34 32 0.31
35 71 0.69
ACGTcount: A:0.27, C:0.34, G:0.29, T:0.10
Consensus pattern (35 bp):
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
Left flanking sequence: Indices 128022 -- 128521
GTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCC
GCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTG
AATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGC
CGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGT
TGATAGAGCCGCGGTATTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAG
CTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATT
TCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCC
ACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTT
Right flanking sequence: Indices 128665 -- 129164
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAG
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
Found at i:128706 original size:9 final size:9
Alignment explanation
Indices: 128668--128703 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
128658 TCCGACCGAA
128668 GGGAGGAGT
1 GGGAGGAGT
128677 GGGAGGAGT
1 GGGAGGAGT
128686 GGGAGGAGT
1 GGGAGGAGT
*
128695 TGGAGGAGT
1 GGGAGGAGT
128704 TGGTCCTACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 128168 -- 128667
ACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCA
AGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTA
TTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCG
GCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATTTCTTCTCTGACGCCGA
TCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCCACCACCAACCAACAGA
AGCGAAAGCCCTTGCGCACTGGGTTTCTTGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 128704 -- 129203
TGGTCCTACGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGG
AGTTGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGT
CTCTGACCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATT
GAATCCACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGG
CTCGGAAGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTT
CTTGTGGCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCG
Found at i:128841 original size:9 final size:9
Alignment explanation
Indices: 128829--128859 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
128819 CCGACCGAAG
128829 GGAGGAGTT
1 GGAGGAGTT
128838 GGAGGAGTT
1 GGAGGAGTT
128847 GGAGGAGTT
1 GGAGGAGTT
128856 GGAG
1 GGAG
128860 AGGAAACTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 128329 -- 128828
GCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCC
AACGTACTATCTACCATTTCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCC
ACTTGTGAAGTTCACCCCACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTTGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 128860 -- 129359
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCC
CACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTG
ACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCG
AGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGG
Found at i:129173 original size:18 final size:18
Alignment explanation
Indices: 129150--129190 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
129140 AGAAAGGCCA
129150 ACTCCCCCCACTCCTCCC
1 ACTCCCCCCACTCCTCCC
129168 ACTCCCCCCACTCCTCCC
1 ACTCCCCCCACTCCTCCC
129186 ACTCC
1 ACTCC
129191 TCCCGGTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.71, G:0.00, T:0.17
Consensus pattern (18 bp):
ACTCCCCCCACTCCTCCC
Left flanking sequence: Indices 128650 -- 129149
AGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGG
ACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGT
GCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGG
TGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCC
GCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTC
CTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAG
TGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCA
Right flanking sequence: Indices 129191 -- 129690
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTGACCTGG
CAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTGTC
TAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAG
AGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGGAA
GGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTC
CTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAA
GAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCT
AGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTT
Found at i:129191 original size:9 final size:9
Alignment explanation
Indices: 129150--129194 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
129140 AGAAAGGCCA
*
129150 ACTCCCCCC
1 ACTCCTCCC
129159 ACTCCTCCC
1 ACTCCTCCC
*
129168 ACTCCCCCC
1 ACTCCTCCC
129177 ACTCCTCCC
1 ACTCCTCCC
129186 ACTCCTCCC
1 ACTCCTCCC
129195 GGTAGGTCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.11, C:0.71, G:0.00, T:0.18
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 128650 -- 129149
AGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGG
ACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGT
GCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGG
TGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCC
GCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTC
CTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAG
TGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCA
Right flanking sequence: Indices 129195 -- 129694
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTGACCTGGCAGT
GCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTGTCTAAA
GACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAGAGTT
TCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGGAAGGAA
GGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTT
CCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGA
GGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGG
AAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCC
Found at i:129401 original size:53 final size:47
Alignment explanation
Indices: 129334--129430 Score: 131
Period size: 48 Copynumber: 1.9 Consensus size: 47
129324 AGACCCTCCG
129334 GTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAGA
1 GTTTCCTTTACCTCAGCT----A-GGGAAGAAAGGGAAGGG-AAGGGAAGAGA
*
129387 GTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAG
1 GTTTCCTTTACCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAG
129431 GAAGGGAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
47 8 0.19
48 17 0.40
49 1 0.02
53 17 0.40
ACGTcount: A:0.32, C:0.13, G:0.38, T:0.16
Consensus pattern (47 bp):
GTTTCCTTTACCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGAGA
Left flanking sequence: Indices 128834 -- 129333
AGTTGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGT
CTCTGACCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATT
GAATCCACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGG
CTCGGAAGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTT
CTTGTGGCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTATCGGTCGGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGC
CCTCCTATCGGAGGGCCCTTCGGTCGAGTGTCTAAAGACCCTCCG
Right flanking sequence: Indices 129431 -- 129930
GAAGGGAAGAGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGC
TAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCC
CTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGA
AGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTT
TCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCT
TTCTGATTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGG
AAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGG
GTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTC
Found at i:129435 original size:4 final size:5
Alignment explanation
Indices: 129413--129463 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
129403 CTAGGGAAGA
* *
129413 AAGGG AAGGG AAGGG AA-GG AAGGG AAGAG ACCCGGG AA-GG AAGGG AAGGG
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG A--AGGG AAGGG AAGGG AAGGG
129463 A
1 A
129464 GTTTCCCTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 8 0.21
5 27 0.71
7 3 0.08
ACGTcount: A:0.41, C:0.06, G:0.53, T:0.00
Consensus pattern (5 bp):
AAGGG
Left flanking sequence: Indices 128913 -- 129412
ACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCC
ACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTC
TACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGA
ACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCC
CCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGG
GCCCTTCGGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAG
GGAAGGGAAAGGGAAGAGAGTTTCCTTTCCCTCAGCTAGGGAAGA
Right flanking sequence: Indices 129464 -- 129963
GTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAA
GAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTC
CTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGG
TTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCT
AGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATACTT
TCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTG
GTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCG
ATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCC
Found at i:129458 original size:9 final size:9
Alignment explanation
Indices: 129405--129461 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
129395 TCCCTCAGCT
*
129405 AGGGAAGAA
1 AGGGAAGGA
129414 AGGGAAGGGA
1 AGGGAA-GGA
129424 AGGGAAGGA
1 AGGGAAGGA
129433 AGGGAAGAGA
1 AGGGAAG-GA
*
129443 CCCGGGAAGGA
1 --AGGGAAGGA
129454 AGGGAAGG
1 AGGGAAGG
129462 GAGTTTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 23 0.56
10 10 0.24
11 2 0.05
12 6 0.15
ACGTcount: A:0.42, C:0.05, G:0.53, T:0.00
Consensus pattern (9 bp):
AGGGAAGGA
Left flanking sequence: Indices 128905 -- 129404
CCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCC
ACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGA
AGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTG
GCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
CCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCT
ATCGGAGGGCCCTTCGGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGG
GAAGAAAGGGAAGGGAAAGGGAAGAGAGTTTCCTTTCCCTCAGCT
Right flanking sequence: Indices 129462 -- 129961
GAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGA
AAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATT
TCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAG
GGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAG
CTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATAC
TTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGAT
TGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGC
CGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTC
Found at i:129652 original size:30 final size:26
Alignment explanation
Indices: 129615--129696 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 26
129605 CTAGGGAAGA
129615 GAGGGAAGGGAAGGTTTCCTTTCCCTT
1 GAGGGAAGGGAAGGTTTCCTTTCCC-T
* *
129642 AGCTAGGGAAGAGAGGGTTTCCTTTCCC-
1 -G--AGGGAAGGGAAGGTTTCCTTTCCCT
*
129670 GAGGGAAGGGGAGGTTTCCTTTCCCT
1 GAGGGAAGGGAAGGTTTCCTTTCCCT
129696 G
1 G
129697 CCGCTAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
25 21 0.46
26 1 0.02
27 1 0.02
28 1 0.02
30 22 0.48
ACGTcount: A:0.18, C:0.20, G:0.35, T:0.27
Consensus pattern (26 bp):
GAGGGAAGGGAAGGTTTCCTTTCCCT
Left flanking sequence: Indices 129115 -- 129614
ATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCCCCCCACT
CCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGG
TCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTC
GGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGG
AAAGGGAAGAGAGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAG
AGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGA
GAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTT
TCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGA
Right flanking sequence: Indices 129697 -- 130196
CCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGA
TTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGG
TTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAA
GAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTAC
CTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCCCCCAGTCGAGTGGGAAGCCAGTCC
CTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTT
CGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCC
CTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGGGGACAGAGC
Found at i:129775 original size:16 final size:16
Alignment explanation
Indices: 129754--129797 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
129744 TGGGCTCTAC
*
129754 CTTTCTGATTAGCATG
1 CTTTCTGATTAGCATA
129770 CTTTCTGATTAGCATA
1 CTTTCTGATTAGCATA
129786 CTTTCTGATTAG
1 CTTTCTGATTAG
129798 TGTATGGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (16 bp):
CTTTCTGATTAGCATA
Left flanking sequence: Indices 129254 -- 129753
GGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTG
TCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAG
AGAGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGG
AAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCT
TCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGG
AAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAG
CTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTT
TCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTAC
Right flanking sequence: Indices 129798 -- 130297
TGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGG
GTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCA
GTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTA
CCTCCCCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGT
CCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTT
GGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGG
GGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTACCGGAGAATG
GGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGG
Found at i:129971 original size:37 final size:37
Alignment explanation
Indices: 129924--130047 Score: 202
Period size: 37 Copynumber: 3.4 Consensus size: 37
129914 GGCCGATCTC
129924 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
*
129961 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCC
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
129998 CCCAGTCGAGTGGGAAGCCAGT--C-CCTCTACC-CT
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
130031 CCCTAGTCGAGTGGGAA
1 CCC-AGTCGAGTGGGAA
130048 TAGAACCAGT
Statistics
Matches: 84, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
33 4 0.05
34 21 0.25
35 1 0.01
37 58 0.69
ACGTcount: A:0.18, C:0.39, G:0.24, T:0.19
Consensus pattern (37 bp):
CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
Left flanking sequence: Indices 129424 -- 129923
AGGGAAGGAAGGGAAGAGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCC
CTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTT
CCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGG
GAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGG
TTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGC
TCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAG
AGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGA
AGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTC
Right flanking sequence: Indices 130048 -- 130547
TAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAA
AAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCG
ATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTA
CCGGAGAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAG
AGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGA
GGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGA
GAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCG
CACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAA
Found at i:130281 original size:27 final size:27
Alignment explanation
Indices: 130217--130284 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
130207 TGGAGCCAGT
*
130217 CGGGGAATGGACTGGATAAGGCCGTAC
1 CGGGGAATGGGCTGGATAAGGCCGTAC
* * *
130244 CGGAGAATGGGCTGGATCAGGCGGTAC
1 CGGGGAATGGGCTGGATAAGGCCGTAC
130271 CGGGGAATGGGCTG
1 CGGGGAATGGGCTG
130285 AAGGCCTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.46, T:0.15
Consensus pattern (27 bp):
CGGGGAATGGGCTGGATAAGGCCGTAC
Left flanking sequence: Indices 129717 -- 130216
CTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAG
CATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTT
CTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGAT
TGGGCCGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAA
GCCAGTCCCTCCTCTACCTCCCCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAG
TGGGAATAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGA
AGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATG
GAGTCGATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGT
Right flanking sequence: Indices 130285 -- 130784
AAGGCCTGGAAGGGGCAGGAGAGAGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGA
GTTTCTTCCCGGTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTT
TCTTCTCGGGCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
GCGGGAGAAAGAGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCG
CAACCTTCTCCGCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTA
TTCCCACTCGACTGGCTCTATCCCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGA
GGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTT
CCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAA
Found at i:130454 original size:56 final size:56
Alignment explanation
Indices: 130368--130501 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
130358 CCGGTATTAT
* * * *
130368 GCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTT-CTCGG
1 GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCT-GG
*
130424 GCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
1 GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
*
130480 GCGGGAGAAAGAGAAAGGTTGC
1 GCGGAAGAAAGAGAAAGGTTGC
130502 GCACTTTAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
56 68 0.97
57 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (56 bp):
GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
Left flanking sequence: Indices 129868 -- 130367
GAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTCGA
GTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCC
CCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGTCCTTC
CACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTTGGAGC
TCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGGGGACA
GAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTACCGGAGAATGGGCTG
GATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGAAAGTTTGCGC
ACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTAT
Right flanking sequence: Indices 130502 -- 131001
GCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGA
AGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATC
CCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATT
CAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTAGGGTAGGGGAAACC
CCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCTGGGTGGGGGAAACCCCCTTTCCCTGGGGT
AAAGGAAATCCCCTCTTCCCTAGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTC
CCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTC
TCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAGCGGACAATCGGA
Found at i:130626 original size:20 final size:20
Alignment explanation
Indices: 130601--130664 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
130591 AGTGGAAGGG
*
130601 CTGGCTCTATTCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
130621 CTGGCTCTATCCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
*
130641 CTGGCTCCATCCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
130661 CTGG
1 CTGG
130665 GGAGGGTGGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.14, C:0.44, G:0.17, T:0.25
Consensus pattern (20 bp):
CTGGCTCTATCCCCACTCGA
Left flanking sequence: Indices 130101 -- 130600
CAGAGAAGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCAT
CAGATGGAGTCGATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTG
GATAAGGCCGTACCGGAGAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAA
GGGGCAGGAGAGAGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCG
GTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGC
GGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAG
AGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCC
GCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGG
Right flanking sequence: Indices 130665 -- 131164
GGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCC
CTCCACCCTTCCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTC
CCTGGGTGGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCCTAGTTGAGGAGGA
GGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCT
AGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAG
CGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAGACGATAACTCCG
AGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCCTTCTCTTCCGGT
GCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTG
Found at i:130776 original size:25 final size:26
Alignment explanation
Indices: 130748--130847 Score: 125
Period size: 25 Copynumber: 4.0 Consensus size: 26
130738 TTCCTCTCTA
* *
130748 GGGTAGGGGAAA-CCCCTATTCCCTG
1 GGGTAAGGGAAACCCCCTCTTCCCTG
130773 GGGTAAGGGAAACCCCCTCTTCCCT-
1 GGGTAAGGGAAACCCCCTCTTCCCTG
**
130798 GGGTGGGGGAAACCCCCT-TTCCCTG
1 GGGTAAGGGAAACCCCCTCTTCCCTG
* *
130823 GGGTAAAGGAAATCCCCTCTTCCCT
1 GGGTAAGGGAAACCCCCTCTTCCCT
130848 AGTTGAGGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
24 6 0.09
25 41 0.64
26 17 0.27
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (26 bp):
GGGTAAGGGAAACCCCCTCTTCCCTG
Left flanking sequence: Indices 130248 -- 130747
GAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGA
AAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGAGGAGA
GAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGAGAGGT
TGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCGCACTT
TAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGAAGCGAA
AGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATCCCCACT
CGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCC
CAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTA
Right flanking sequence: Indices 130848 -- 131347
AGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAAC
CCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAA
CCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAG
ACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCC
TTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAATTGG
AACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCGTTCA
CAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGCTTTGGTTGGGAGGGAGAGGGAAGGT
ACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTGGGAGG
Found at i:130807 original size:50 final size:50
Alignment explanation
Indices: 130748--130847 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
130738 TTCCTCTCTA
*
130748 GGGTAGGGGAAA-CCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCT
1 GGGTAGGGGAAACCCCCT-TTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
* *
130798 GGGTGGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCCT
1 GGGTAGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
130848 AGTTGAGGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 41 0.89
51 5 0.11
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (50 bp):
GGGTAGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
Left flanking sequence: Indices 130248 -- 130747
GAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGA
AAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGAGGAGA
GAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGAGAGGT
TGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCGCACTT
TAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGAAGCGAA
AGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATCCCCACT
CGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCC
CAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTA
Right flanking sequence: Indices 130848 -- 131347
AGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAAC
CCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAA
CCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAG
ACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCC
TTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAATTGG
AACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCGTTCA
CAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGCTTTGGTTGGGAGGGAGAGGGAAGGT
ACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTGGGAGG
Found at i:130890 original size:22 final size:22
Alignment explanation
Indices: 130847--130887 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
130837 CCCTCTTCCC
*
130847 TAGTTGAGGAGGAGGGAACCTT
1 TAGTTGAGGAGGAGGAAACCTT
*
130869 TAGTTGAGGGGGA-GAAACC
1 TAGTTGAGGAGGAGGAAACC
130888 CTTCCCTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.29, C:0.10, G:0.41, T:0.20
Consensus pattern (22 bp):
TAGTTGAGGAGGAGGAAACCTT
Left flanking sequence: Indices 130347 -- 130846
TGAGTTTCTTCCCGGTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGG
GTTTCTTCTCGGGCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCC
TGGGCGGGAGAAAGAGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCT
CCGCAACCTTCTCCGCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCT
CTATTCCCACTCGACTGGCTCTATCCCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGT
GGAGGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACC
CTTCCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCTGGGT
GGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCC
Right flanking sequence: Indices 130888 -- 131387
CTTCCCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTC
CTTCTCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGAT
CAGACCAATCAGACGAGAAGATGAGACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGG
GTAAAGAAAAGGGGAAGGAAAAGCCTTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGA
TAGCACTGCTGCTGGTGGCAATTGGAACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCC
TACTCTCCCCTTCACCGATCGTTCACAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGC
TTTGGTTGGGAGGGAGAGGGAAGGTACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTG
GGAGGGCTCGGGAGCTCCATGAGCTCCATACGGGGGCAGCCGGGA
Found at i:132450 original size:9 final size:9
Alignment explanation
Indices: 132436--132464 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
132426 CTCTGGAGAG
132436 CCAACTCCT
1 CCAACTCCT
132445 CCAACTCCT
1 CCAACTCCT
132454 CCAACTCCT
1 CCAACTCCT
132463 CC
1 CC
132465 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 131936 -- 132435
GTATTTGTTAACAGTCATGGCAATCGGTTCGTTCTTCCTTTCCTGGTTTTCATGGGAGTTTGTTA
GTGGGAGCTACAGTGGAAGCAAGAGCTATAAGTGGCGCTCTCTCTGTATACCATAAGGTTAAGCA
AGTGCCAGTGCCAGTGCCAGTGCTGGTGGTGGGGTGCGTTTCCCCGACTAGTCGAAGTCCTTCGC
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAG
Right flanking sequence: Indices 132465 -- 132964
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCGGGCCAACTC
CTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCAC
TCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGG
GGAGTCAGGTTCAATCCACTTAAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTG
CTACGGTAGGCTACTGACGCTACGCCCGCTACGGCTACGTTAGCA
Found at i:132607 original size:36 final size:38
Alignment explanation
Indices: 132561--132639 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 38
132551 TTCGTTCGGA
132561 CCCTATCGGTCGGAGTTGCCCT-TC-GGGCCAACTCCT
1 CCCTATCGGTCGGAGTTGCCCTATCGGGGCCAACTCCT
*
132597 CCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCT
1 CCCTATCGGTCGGAGTTGCCCTATC-G-GGGCCAACTCCT
132637 CCC
1 CCC
132640 ACTCCCCCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 21 0.55
37 2 0.05
40 15 0.39
ACGTcount: A:0.13, C:0.38, G:0.25, T:0.24
Consensus pattern (38 bp):
CCCTATCGGTCGGAGTTGCCCTATCGGGGCCAACTCCT
Left flanking sequence: Indices 132061 -- 132560
AAGCAAGTGCCAGTGCCAGTGCCAGTGCTGGTGGTGGGGTGCGTTTCCCCGACTAGTCGAAGTCC
TTCGCCTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACC
AAGAGCACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAA
AGGCCTTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTC
TCTCTCGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCG
GGTAGAAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACT
CCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCAC
TCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 132640 -- 133139
ACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAGAGGGCGGC
CCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTTAAATAGCGAAGGATACGGGGATTC
TTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCTACGCCCGCTACGGCTACGTTAGCA
CGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGGGTAAAATACATGACTTTAAAGCAG
GTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAATAGGGGGGCAAATAATGGATCCATG
GGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTTTGTT
Found at i:132649 original size:9 final size:9
Alignment explanation
Indices: 132631--132684 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
132621 CGGAGGGCCA
132631 ACTCCTCCC
1 ACTCCTCCC
*
132640 ACTCCCCCC
1 ACTCCTCCC
132649 ACTCCTCCC
1 ACTCCTCCC
*
132658 ACTCCCCCC
1 ACTCCTCCC
132667 ACTCCTCCC
1 ACTCCTCCC
132676 ACTCCTCCC
1 ACTCCTCCC
132685 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 132131 -- 132630
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACTCCTCC
AACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGAC
CGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCA
Right flanking sequence: Indices 132685 -- 133184
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATC
GGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTTAAAT
AGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCTACGC
CCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGGGTAA
AATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAATAGGG
GGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTTTGTT
GGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCCCCCT
Found at i:132652 original size:18 final size:18
Alignment explanation
Indices: 132631--132680 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
132621 CGGAGGGCCA
132631 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
132649 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
132667 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
132681 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 132131 -- 132630
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACTCCTCC
AACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGAC
CGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCA
Right flanking sequence: Indices 132681 -- 133180
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCC
TATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTT
AAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCT
ACGCCCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGG
GTAAAATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAAT
AGGGGGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTT
TGTTGGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCC
Found at i:132721 original size:35 final size:35
Alignment explanation
Indices: 132682--132809 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
132672 TCCCACTCCT
132682 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
132717 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
132752 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *
132787 CCCTATCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
132810 CTATCGGAGG
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 132182 -- 132681
CCAATGACCAAGAGCACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGG
TAAGCGAAAAGGCCTTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGG
GAAGCTCTCTCTCTCGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGC
TCCGTCTCGGGTAGAAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACT
CCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTTGCCCTTCGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCT
CCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 132810 -- 133309
CTATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACT
TAAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGC
TACGCCCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCG
GGTAAAATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAA
TAGGGGGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACT
TTGTTGGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCCCCCTTGCATTACTTCACTT
CCGGTTTCGTAGTTTTCTACTTTAAACACAGATCCGTAAGCGGTCTGAGGGCGCATAGATCGGGT
TCATTACCCTTCCTATGTATGATGAGAATACCTTCATCCGATTTA
Found at i:133989 original size:39 final size:39
Alignment explanation
Indices: 133935--134012 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
133925 GTCAAGCCAC
133935 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
1 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
133974 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
1 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
134013 CTTTTCAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (39 bp):
TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
Left flanking sequence: Indices 133435 -- 133934
GGCAGGCCGGATCCTTCAAGGGGGGTTGCTTCGTTGGAGGTTTCAAAGGGTTCCATCGGTTTTCA
TTACCATCAAACCTTCAATATCGCATAGTATGCTGCTTTGAAACAACAAGTCTCGTATCTGGTAA
TCCCAATCAACTTTCATTACCATCAAATGATTGGGATTCCAATAAAGCTTGGTCTCAAAATGCCC
TCAAAAGTCATGTATTTTAAAATTAATTGAATTTAATTTAATTTGGAATTTAATTTATCACTTTA
ATTAATAATTAATTTTCAATTAAATTAAATTAAAGTAACTTAGCCGCCCTTTAAATAAAGGGTGT
ATTCGCCATTTCCGTCCGGTTCAATAAAGCAAGGAGGCTTTTTCAACGGATCAGTAACGAGTCTA
TATCTTCTGGGCTGTCGGAGAAATTCCAGCATTTCTTGAATCGCTTGAAGTTCTGTCTCATTCTC
AAATATTGCTTGCGTTCCTTGAAGGTTTTTCTCCAGTCAAGCCAC
Right flanking sequence: Indices 134013 -- 134512
CTTTTCAATAAAAGGCTCCTCGTCCTTCGCTTTGAGCAAAGCTCTCAGTTCCTGAATCTCTTCCT
TCGACTTTTCCAATCCATGCACTTTGAGGGCTGTCTCTCTGCTCCGCTTCCCGCACTTTTAAAAG
GCCTTTTAAAAGGCCCGTTTTCCCACTCGAAAGTGTTACCACCTCCCATTCTTAGAGTCTTAGAG
ATGGAATCCCAAGTTCTAGAGGCCCTTTAAGGACCTTCATTTCTCCCTCGAATTCGGGGAAGAGT
GAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCAAACACCCTTTAAGC
GCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCCGACAAGAGAAAGCTGCTG
CAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATCGTTATGCACGAGAG
TTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCC
Found at i:134150 original size:12 final size:12
Alignment explanation
Indices: 134133--134157 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
134123 GCTTCCCGCA
134133 CTTTTAAAAGGC
1 CTTTTAAAAGGC
134145 CTTTTAAAAGGC
1 CTTTTAAAAGGC
134157 C
1 C
134158 CGTTTTCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CTTTTAAAAGGC
Left flanking sequence: Indices 133633 -- 134132
AAAGTCATGTATTTTAAAATTAATTGAATTTAATTTAATTTGGAATTTAATTTATCACTTTAATT
AATAATTAATTTTCAATTAAATTAAATTAAAGTAACTTAGCCGCCCTTTAAATAAAGGGTGTATT
CGCCATTTCCGTCCGGTTCAATAAAGCAAGGAGGCTTTTTCAACGGATCAGTAACGAGTCTATAT
CTTCTGGGCTGTCGGAGAAATTCCAGCATTTCTTGAATCGCTTGAAGTTCTGTCTCATTCTCAAA
TATTGCTTGCGTTCCTTGAAGGTTTTTCTCCAGTCAAGCCACTAAGAACCTTTAATTTAATTTCA
TTGAAAATTAAAGTGATAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGACTTTTCAATA
AAAGGCTCCTCGTCCTTCGCTTTGAGCAAAGCTCTCAGTTCCTGAATCTCTTCCTTCGACTTTTC
CAATCCATGCACTTTGAGGGCTGTCTCTCTGCTCCGCTTCCCGCA
Right flanking sequence: Indices 134158 -- 134657
CGTTTTCCCACTCGAAAGTGTTACCACCTCCCATTCTTAGAGTCTTAGAGATGGAATCCCAAGTT
CTAGAGGCCCTTTAAGGACCTTCATTTCTCCCTCGAATTCGGGGAAGAGTGAACCACAAATTCAT
TCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCAAACACCCTTTAAGCGCTTTTTGCACCCTT
TGGTAAGTGCGCGTTAGACACTATAATTTTCCGACAAGAGAAAGCTGCTGCAAATCGTTCGATAA
TGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATCGTTATGCACGAGAGTTACGAGAAAATATG
GACGCAAAAAAGAGGACCTTTAAGGCGCCCTTTAAGTCTGTCACTATTTTTGTTTATTCATGGGT
GTTTGTTTTGATGACCCTCTCAAGGTCGGGCTGGCCCCCTAAGGGCGGGGTGCTTGCTAGCGGTT
ACTTCGGGACTGACTCCCCCGCCTACGGGAGTTTGGAGTTGGCCG
Found at i:134766 original size:8 final size:8
Alignment explanation
Indices: 134755--134799 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
134745 TCGTCTTATC
134755 GTCTGATT
1 GTCTGATT
*
134763 GTCTCATT
1 GTCTGATT
134771 GTCTGATT
1 GTCTGATT
134779 G---GATT
1 GTCTGATT
*
134784 GTCTTATT
1 GTCTGATT
134792 GTCTGATT
1 GTCTGATT
134800 AAGCTGTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
5 5 0.17
8 25 0.83
ACGTcount: A:0.13, C:0.13, G:0.22, T:0.51
Consensus pattern (8 bp):
GTCTGATT
Left flanking sequence: Indices 134255 -- 134754
TCGAATTCGGGGAAGAGTGAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGAT
TCCAAACACCCTTTAAGCGCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCC
GACAAGAGAAAGCTGCTGCAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAA
TATCGTTATGCACGAGAGTTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCCTT
TAAGTCTGTCACTATTTTTGTTTATTCATGGGTGTTTGTTTTGATGACCCTCTCAAGGTCGGGCT
GGCCCCCTAAGGGCGGGGTGCTTGCTAGCGGTTACTTCGGGACTGACTCCCCCGCCTACGGGAGT
TTGGAGTTGGCCGCCTAACGCTCCGCTTGCTAGTACGTGGCTTCGTCATAGCATTGAAGCCGACA
GCTCCATAGACGTCTCCCTATATACTGCATTTCCATCGTCTTATC
Right flanking sequence: Indices 134800 -- 135299
AAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTCTCAAAGGCAAAGCCGCCCTTTTAA
AAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCTTTGGAAAAGGCAAAGCCTTTAAAA
AGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAACGGCGCGGCAAGGAAACGAAGTCA
TAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTCGTTAGGGCTACAGCTACTACGCGG
GTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCGGGCTACGCGCCTGAGTAAGGCCGG
GTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACGGGCGTACTACAGCTACGCGGGAGC
AGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTGATTTAATTTAATTTAATTTACCCG
TAAGCTACGCGGACCCATATACGTAAGCTGGCGGGTCCGTAAGCT
Found at i:134783 original size:21 final size:21
Alignment explanation
Indices: 134759--134799 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
134749 CTTATCGTCT
134759 GATTGTCTCATTGTCTGATTG
1 GATTGTCTCATTGTCTGATTG
*
134780 GATTGTCTTATTGTCTGATT
1 GATTGTCTCATTGTCTGATT
134800 AAGCTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.22, T:0.51
Consensus pattern (21 bp):
GATTGTCTCATTGTCTGATTG
Left flanking sequence: Indices 134259 -- 134758
ATTCGGGGAAGAGTGAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCA
AACACCCTTTAAGCGCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCCGACA
AGAGAAAGCTGCTGCAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATC
GTTATGCACGAGAGTTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCCTTTAAG
TCTGTCACTATTTTTGTTTATTCATGGGTGTTTGTTTTGATGACCCTCTCAAGGTCGGGCTGGCC
CCCTAAGGGCGGGGTGCTTGCTAGCGGTTACTTCGGGACTGACTCCCCCGCCTACGGGAGTTTGG
AGTTGGCCGCCTAACGCTCCGCTTGCTAGTACGTGGCTTCGTCATAGCATTGAAGCCGACAGCTC
CATAGACGTCTCCCTATATACTGCATTTCCATCGTCTTATCGTCT
Right flanking sequence: Indices 134800 -- 135299
AAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTCTCAAAGGCAAAGCCGCCCTTTTAA
AAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCTTTGGAAAAGGCAAAGCCTTTAAAA
AGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAACGGCGCGGCAAGGAAACGAAGTCA
TAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTCGTTAGGGCTACAGCTACTACGCGG
GTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCGGGCTACGCGCCTGAGTAAGGCCGG
GTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACGGGCGTACTACAGCTACGCGGGAGC
AGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTGATTTAATTTAATTTAATTTACCCG
TAAGCTACGCGGACCCATATACGTAAGCTGGCGGGTCCGTAAGCT
Found at i:135297 original size:16 final size:17
Alignment explanation
Indices: 135276--135309 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
135266 GACCCATATA
*
135276 CGTAAGCT-GGCGGGTC
1 CGTAAGCTACGCGGGTC
135292 CGTAAGCTACGCGGGTC
1 CGTAAGCTACGCGGGTC
135309 C
1 C
135310 ATTAGCCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.15, C:0.29, G:0.38, T:0.18
Consensus pattern (17 bp):
CGTAAGCTACGCGGGTC
Left flanking sequence: Indices 134776 -- 135275
ATTGGATTGTCTTATTGTCTGATTAAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTC
TCAAAGGCAAAGCCGCCCTTTTAAAAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCT
TTGGAAAAGGCAAAGCCTTTAAAAAGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAA
CGGCGCGGCAAGGAAACGAAGTCATAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTC
GTTAGGGCTACAGCTACTACGCGGGTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCG
GGCTACGCGCCTGAGTAAGGCCGGGTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACG
GGCGTACTACAGCTACGCGGGAGCAGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTG
ATTTAATTTAATTTAATTTACCCGTAAGCTACGCGGACCCATATA
Right flanking sequence: Indices 135310 -- 135809
ATTAGCCTGTAAGCTATGTGGTCCCAAATACCCATTTGCCGCTGCTACGGCTACTGACGCTACGC
CCGCTACGGCTCAAAGCTAACGCGCTAAAGACTCTTTGGCAAAGTCAAAGCCTAGCAGACTCGAA
GGAGAAGTCGCGGGCGGACTCAAAGTCAGAGGCAAAGCTTAAAGTCATGTATTTTACCGGCTTTC
TTTAAAGTACTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTGAGTTCACGCAAACGAATTT
ACTTTAATTTTCAATTAAATTAAGGTGGGGGCCTCCGGCCCCCAGTAACGCTTTAATTTTAAACT
AAATTAAATTCAAGTACTTTCAAGAAAGAAAGAAAGTGCCGTGGATACTTTAATTTAATTTAATT
GAAAATTAAAGTATCTTCAGTCCGCCCTTTTAAAAGTTCGCACGCACGTAGACTCTTTGGCAAAG
GCAAAGCCGCGTAGGCGCACGTAGACGGCCAAGCCGCGACTTTTA
Found at i:136107 original size:34 final size:34
Alignment explanation
Indices: 136069--136133 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
136059 GCACGTTTTA
** *
136069 CTTTAATTTTCAATTAAATTAAATTAAAGTAACG
1 CTTTAATTTGAAACTAAATTAAATTAAAGTAACG
*
136103 CTTTAATTTGAAACTAAATTAAATTCAAGTA
1 CTTTAATTTGAAACTAAATTAAATTAAAGTA
136134 CTTTCAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (34 bp):
CTTTAATTTGAAACTAAATTAAATTAAAGTAACG
Left flanking sequence: Indices 135569 -- 136068
TACTTTAATTTTCAATTAAATTAAGGTGGGGGCCTCCGGCCCCCAGTAACGCTTTAATTTTAAAC
TAAATTAAATTCAAGTACTTTCAAGAAAGAAAGAAAGTGCCGTGGATACTTTAATTTAATTTAAT
TGAAAATTAAAGTATCTTCAGTCCGCCCTTTTAAAAGTTCGCACGCACGTAGACTCTTTGGCAAA
GGCAAAGCCGCGTAGGCGCACGTAGACGGCCAAGCCGCGACTTTTAAAAGGAGGCGCACGTAGAC
TCAAAGGCCAAGCCGTAGCGTTAGGGCGCAGACTCTTTGGAAAAGGCAAAGCTTAGCGAAGCGTA
AACTCGTCAAAGGCAAAGCCTTTTAAAAAGCGCAGACTCTTTGGAAAAGGCCGTGGTTACTTTAA
TTTAATTTAATTGAAAATTAAAGGTTCTTAGCGCCAAGCGACTTTTAAAAGGAGGCGCACGTAGA
CTCTTTCAAAGGCAAAGCCGCCCTTTTAAAAGTTCGCACGTTTTA
Right flanking sequence: Indices 136134 -- 136633
CTTTCAAGTTATTACTTTAATTTTCAATTAAATTAAATTAAAGTAAACTTAGTCCGCCCTTTTAA
TTAAAAGTTCGCGCAAACTCAAAGCTAACGCTTTTTTTAAAAGGGCGACTGAGTCAATTGATTCA
ATTGAAACTATTTAATTTAATTTAATTTAACGCTCAAACTCTTCGGATAAGTCGAAGCTTAGGAC
TCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCACAGTCGAAGGCAAAGGCCTA
GCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTGGGTGGTCCCATCTATTAGGTGGTCCCATC
CAATAGGCTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCAGTAGGTGGGGCAGCGGCTA
CGGCTAAGCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGGAGCTTAAACCACCCATTAG
TAAACCCATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGA
Found at i:136465 original size:17 final size:17
Alignment explanation
Indices: 136430--136465 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
136420 AGAAGGGTTG
* *
136430 GGTGGTCCCATCTATTA
1 GGTGGTCCCATCCAATA
136447 GGTGGTCCCATCCAATA
1 GGTGGTCCCATCCAATA
136464 GG
1 GG
136466 CTCTAGAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (17 bp):
GGTGGTCCCATCCAATA
Left flanking sequence: Indices 135930 -- 136429
CTCTTTGGAAAAGGCCGTGGTTACTTTAATTTAATTTAATTGAAAATTAAAGGTTCTTAGCGCCA
AGCGACTTTTAAAAGGAGGCGCACGTAGACTCTTTCAAAGGCAAAGCCGCCCTTTTAAAAGTTCG
CACGTTTTACTTTAATTTTCAATTAAATTAAATTAAAGTAACGCTTTAATTTGAAACTAAATTAA
ATTCAAGTACTTTCAAGTTATTACTTTAATTTTCAATTAAATTAAATTAAAGTAAACTTAGTCCG
CCCTTTTAATTAAAAGTTCGCGCAAACTCAAAGCTAACGCTTTTTTTAAAAGGGCGACTGAGTCA
ATTGATTCAATTGAAACTATTTAATTTAATTTAATTTAACGCTCAAACTCTTCGGATAAGTCGAA
GCTTAGGACTCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCACAGTCGAAGGC
AAAGGCCTAGCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTG
Right flanking sequence: Indices 136466 -- 136965
CTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCAGTAGGTGGGGCAGCGGCTACGGCTAA
GCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGGAGCTTAAACCACCCATTAGTAAACCC
ATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGAGTAAACCCGCTATGTGGGCGGGTAAAC
CTGTAAGGCACCTACGCGGGCCCATATACGTAAGGCGGGTCCGGGACCCATTAGCGGGCCTGTAA
GCTATGTGGGTAAACCACCCATTAGCGGACCCACCCATTAGCGGGCCTGTGAGGTGGGTACCATT
GGGTAGACCCGTAAGCTACGCGGGTAAACCACCCATTAGCGGGTGAACCACCCATTAGCGGGTAA
ACTAAACCTGTACGGCACCTATGTGGGTAAACCCATAAGCAAGCTATGTGGGCGGTTGGGTAATG
ATCAATCAATAGAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTC
Found at i:136834 original size:19 final size:19
Alignment explanation
Indices: 136810--136857 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
136800 CGTAAGCTAC
136810 GCGGGTAAACCACCCATTA
1 GCGGGTAAACCACCCATTA
*
136829 GCGGGTGAACCACCCATTA
1 GCGGGTAAACCACCCATTA
136848 GCGGGTAAAC
1 GCGGGTAAAC
136858 TAAACCTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (19 bp):
GCGGGTAAACCACCCATTA
Left flanking sequence: Indices 136310 -- 136809
ATAAGTCGAAGCTTAGGACTCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCAC
AGTCGAAGGCAAAGGCCTAGCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTGGGTGGTCCCA
TCTATTAGGTGGTCCCATCCAATAGGCTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCA
GTAGGTGGGGCAGCGGCTACGGCTAAGCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGG
AGCTTAAACCACCCATTAGTAAACCCATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGAG
TAAACCCGCTATGTGGGCGGGTAAACCTGTAAGGCACCTACGCGGGCCCATATACGTAAGGCGGG
TCCGGGACCCATTAGCGGGCCTGTAAGCTATGTGGGTAAACCACCCATTAGCGGACCCACCCATT
AGCGGGCCTGTGAGGTGGGTACCATTGGGTAGACCCGTAAGCTAC
Right flanking sequence: Indices 136858 -- 137357
TAAACCTGTACGGCACCTATGTGGGTAAACCCATAAGCAAGCTATGTGGGCGGTTGGGTAATGAT
CAATCAATAGAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCC
GCTAACTCTCTCTCTCTCTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAG
AATTCACACAGAGGCCTTGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCA
CTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGG
CACCAACAGTTTTGGTTCCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGC
AGCAGAAGCAGTTTCAGGACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGT
GGTTCATTCCGGGTCAACAGAACGTGTCGGGTCAACAGAACATGT
Found at i:137345 original size:18 final size:18
Alignment explanation
Indices: 137322--137367 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
137312 TGGTTCATTC
*
137322 CGGGTCAACAGAACGTGT
1 CGGGTCAACAGAACATGT
137340 CGGGTCAACAGAACATGT
1 CGGGTCAACAGAACATGT
137358 CGGGTCAACA
1 CGGGTCAACA
137368 AATGGAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.15
Consensus pattern (18 bp):
CGGGTCAACAGAACATGT
Left flanking sequence: Indices 136822 -- 137321
CCCATTAGCGGGTGAACCACCCATTAGCGGGTAAACTAAACCTGTACGGCACCTATGTGGGTAAA
CCCATAAGCAAGCTATGTGGGCGGTTGGGTAATGATCAATCAATAGAGCGGAAAGAGAGAGCTTC
CAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCTCTCTCTCTCTCTCATTCCCT
GCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACACAGAGGCCTTGTTCCGGGAGC
AAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACATCGCCTACAAGGC
CGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTTCCACCAGCGCCA
ATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAGGACCAGTGCTGC
AGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTC
Right flanking sequence: Indices 137368 -- 137867
AATGGAATGGATGCCGTCGAATCAACGTCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGGT
TCCGGGTACTTCATTCCGGGTGGTTCATTCCGGGTCAAATAGAACAACCCATTCCATTCCGTTCG
TAGTTCATTTCGGGTAAACAAATGGAAGAAAGTCCCCATTCCATTCCGTTCGTAGCTCATTCCGG
GTAGGTGGTTCATTCCGGGTAGTTCATTCCTGGTAGTTCCAAGTACTTCATTCCGGATCAACAGA
ACGTGCAACAGAACGTATCAGGTCAACCCCATTTGGGAAAGCTAAAGCGAAAGCCTGGAAGAATG
GAATCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAAGCCTGCTCCCCCAGCTCGGACTAGAA
GGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCGACCTAAAGGCCCCTCTCCCTTCGTGG
TAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTCCCTCTC
Found at i:137451 original size:14 final size:14
Alignment explanation
Indices: 137432--137467 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
137422 TTCCAGGTGG
137432 TTCCGGGTACTTCA
1 TTCCGGGTACTTCA
**
137446 TTCCGGGTGGTTCA
1 TTCCGGGTACTTCA
137460 TTCCGGGT
1 TTCCGGGT
137468 CAAATAGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.08, C:0.25, G:0.31, T:0.36
Consensus pattern (14 bp):
TTCCGGGTACTTCA
Left flanking sequence: Indices 136932 -- 137431
GAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCT
CTCTCTCTCTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACAC
AGAGGCCTTGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAAC
CCAAACATCGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAG
TTTTGGTTCCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGC
AGTTTCAGGACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTC
CGGGTCAACAGAACGTGTCGGGTCAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCG
AATCAACGTCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGG
Right flanking sequence: Indices 137468 -- 137967
CAAATAGAACAACCCATTCCATTCCGTTCGTAGTTCATTTCGGGTAAACAAATGGAAGAAAGTCC
CCATTCCATTCCGTTCGTAGCTCATTCCGGGTAGGTGGTTCATTCCGGGTAGTTCATTCCTGGTA
GTTCCAAGTACTTCATTCCGGATCAACAGAACGTGCAACAGAACGTATCAGGTCAACCCCATTTG
GGAAAGCTAAAGCGAAAGCCTGGAAGAATGGAATCTGCATCATTTGCTCGATCCAAAGCCAGAGC
GAAAGCCTGCTCCCCCAGCTCGGACTAGAAGGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATC
ATCGACCTAAAGGCCCCTCTCCCTTCGTGGTAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCA
AGTCCCTCTCCCTTCGTCAGGGTACAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGG
AAAGGATTAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGC
Found at i:137512 original size:45 final size:48
Alignment explanation
Indices: 137455--137565 Score: 129
Period size: 52 Copynumber: 2.3 Consensus size: 48
137445 ATTCCGGGTG
*
137455 GTTCATTCCGGGT-CAAATAGAA-CAA-CCCATTCCATTCCGTTCGTA
1 GTTCATTCCGGGTACAAATAGAAGAAACCCCATTCCATTCCGTTCGTA
* *
137500 GTTCATTTCGGGTAAACAAATGGAAGAAAGTCCCCATTCCATTCCGTTCGTA
1 GTTCATTCCGGGT--ACAAATAGAAGAAA--CCCCATTCCATTCCGTTCGTA
*
137552 GCTCATTCCGGGTA
1 GTTCATTCCGGGTA
137566 GGTGGTTCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
45 12 0.22
48 8 0.15
49 2 0.04
50 1 0.02
52 31 0.57
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
GTTCATTCCGGGTACAAATAGAAGAAACCCCATTCCATTCCGTTCGTA
Left flanking sequence: Indices 136955 -- 137454
CTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCTCTCTCTCTCTCTCATTCCCTGCC
TCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACACAGAGGCCTTGTTCCGGGAGCAAG
AATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACATCGCCTACAAGGCCGA
AAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTTCCACCAGCGCCAATT
GATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAGGACCAGTGCTGCAGC
AGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTCCGGGTCAACAGAACGTGTCGGGT
CAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCGAATCAACGTCCCCATTCCGTGTT
CAGTCCGGGTAGTTCCAGGTGGTTCCGGGTACTTCATTCCGGGTG
Right flanking sequence: Indices 137566 -- 138065
GGTGGTTCATTCCGGGTAGTTCATTCCTGGTAGTTCCAAGTACTTCATTCCGGATCAACAGAACG
TGCAACAGAACGTATCAGGTCAACCCCATTTGGGAAAGCTAAAGCGAAAGCCTGGAAGAATGGAA
TCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAAGCCTGCTCCCCCAGCTCGGACTAGAAGGC
TGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCGACCTAAAGGCCCCTCTCCCTTCGTGGTAG
GTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTCCCTCTCCCTTCGTCAGGGTACAGCGCGTT
AACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAGGATTAAGGTTCTTCCAGTGCGCGTAGCCA
ATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCAATGATCCCAAGTAGGCTCTGTATTTC
AAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGGGTGTAA
Found at i:137589 original size:14 final size:14
Alignment explanation
Indices: 137570--137601 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
137560 CGGGTAGGTG
137570 GTTCATTCCGGGTA
1 GTTCATTCCGGGTA
*
137584 GTTCATTCCTGGTA
1 GTTCATTCCGGGTA
137598 GTTC
1 GTTC
137602 CAAGTACTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.22, G:0.25, T:0.41
Consensus pattern (14 bp):
GTTCATTCCGGGTA
Left flanking sequence: Indices 137070 -- 137569
TGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACAT
CGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTT
CCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAG
GACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTCCGGGTCAA
CAGAACGTGTCGGGTCAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCGAATCAACG
TCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGGTTCCGGGTACTTCATTCCGGGTGGTTCA
TTCCGGGTCAAATAGAACAACCCATTCCATTCCGTTCGTAGTTCATTTCGGGTAAACAAATGGAA
GAAAGTCCCCATTCCATTCCGTTCGTAGCTCATTCCGGGTAGGTG
Right flanking sequence: Indices 137602 -- 138101
CAAGTACTTCATTCCGGATCAACAGAACGTGCAACAGAACGTATCAGGTCAACCCCATTTGGGAA
AGCTAAAGCGAAAGCCTGGAAGAATGGAATCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAA
GCCTGCTCCCCCAGCTCGGACTAGAAGGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCG
ACCTAAAGGCCCCTCTCCCTTCGTGGTAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTC
CCTCTCCCTTCGTCAGGGTACAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAG
GATTAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTA
CCAATGATCCCAAGTAGGCTCTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATC
TGGGTGTAACATAACGCTTGAAATACGGAGCCTACTTTTTGAAAA
Found at i:138412 original size:22 final size:22
Alignment explanation
Indices: 138382--138475 Score: 75
Period size: 22 Copynumber: 4.1 Consensus size: 22
138372 CGGGAAGGAA
138382 GAGG-CTTTCGCTCTCTCTCTG
1 GAGGTCTTTCGCTCTCTCTCTG
****
138403 GAGGTCTTTCGCTCTGGAAGCT-
1 GAGGTCTTTCGCTCT-CTCTCTG
* *
138425 GAAGTCTTTTGCTCTCTCTCTGGG
1 GAGGTCTTTCGCTCTCTCTCT--G
138449 AGAGGATCTTTCGCTCTCTCTCTG
1 -GAGG-TCTTTCGCTCTCTCTCTG
138473 GAG
1 GAG
138476 AGAAGAAGTT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
21 6 0.11
22 23 0.43
23 5 0.09
24 1 0.02
25 3 0.06
26 16 0.30
ACGTcount: A:0.11, C:0.27, G:0.27, T:0.36
Consensus pattern (22 bp):
GAGGTCTTTCGCTCTCTCTCTG
Left flanking sequence: Indices 137882 -- 138381
CAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAGGATTAAGGTTCTTCCAGTGC
GCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCAATGATCCCAAGTAGGCT
CTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGGGTGTAACATAACGCTTG
AAATACGGAGCCTACTTTTTGAAAAAGAAAAGAACCGACGAAAATTCATTGAATTTACTTTAATT
AATTTTCAATTAAATTAAATTAAAGTAATTTAATTGAAAATTAATTTCAATACTTTTTTAAAGAA
AGAAAGAAAGAAAGGAATTTGAAGCTTAAATTAATTTAAAATCAGAGTACCACACCATTTAAAAG
CCTTTTAAAAGGGCTAGTTGCTAAGGAAAAACGGCTAGCCCTTATAGGTGTTAGAAGGGGCGCCA
AGAAAGCAGGCTTTCTCTCTCTTTCGCTCTCTCTCCGGGAAGGAA
Right flanking sequence: Indices 138476 -- 138975
AGAAGAAGTTCTCGCTCTCTTGTGTTGATCGGGGCCGATCGGATTGCGGATTTGAGTAAATGATG
CAGATTCCAGTTCCGCTGGAGTTCCGCGGAATCCGAATTGATTCAATGAAATCCGCTTAGGAATT
GAGTCAATAGAGATTCAATGAAAATTAGAGATTCAATGAAGCTTCTCTCCCCATCGCTCCCCCCA
ATCGATTGGGACGATTGGGTACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCACT
TCTCGTCGGATTCTGGGGGTATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATACC
CCATCGACTGATTGGGATCATCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCCA
ATCGATTGGGGAAGGAAGAAGCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTGC
TCGAACAAGTTAGCTTGGTTACGTGTTCGAATGTGTTTCCCCGAC
Found at i:138490 original size:28 final size:26
Alignment explanation
Indices: 138430--138495 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
138420 AAGCTGAAGT
* * *
138430 CTTTTGCTCTCTCTCTGGGAGAGGAT
1 CTTTCGCTCTCTCTCTGGGAGAAGAA
138456 CTTTCGCTCTCTCTCTGGAGAGAAGAA
1 CTTTCGCTCTCTCTCTGG-GAGAAGAA
*
138483 GTTCTCGCTCTCT
1 CTT-TCGCTCTCT
138496 TGTGTTGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 17 0.50
27 8 0.24
28 9 0.26
ACGTcount: A:0.14, C:0.27, G:0.23, T:0.36
Consensus pattern (26 bp):
CTTTCGCTCTCTCTCTGGGAGAAGAA
Left flanking sequence: Indices 137930 -- 138429
TAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCA
ATGATCCCAAGTAGGCTCTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGG
GTGTAACATAACGCTTGAAATACGGAGCCTACTTTTTGAAAAAGAAAAGAACCGACGAAAATTCA
TTGAATTTACTTTAATTAATTTTCAATTAAATTAAATTAAAGTAATTTAATTGAAAATTAATTTC
AATACTTTTTTAAAGAAAGAAAGAAAGAAAGGAATTTGAAGCTTAAATTAATTTAAAATCAGAGT
ACCACACCATTTAAAAGCCTTTTAAAAGGGCTAGTTGCTAAGGAAAAACGGCTAGCCCTTATAGG
TGTTAGAAGGGGCGCCAAGAAAGCAGGCTTTCTCTCTCTTTCGCTCTCTCTCCGGGAAGGAAGAG
GCTTTCGCTCTCTCTCTGGAGGTCTTTCGCTCTGGAAGCTGAAGT
Right flanking sequence: Indices 138496 -- 138995
TGTGTTGATCGGGGCCGATCGGATTGCGGATTTGAGTAAATGATGCAGATTCCAGTTCCGCTGGA
GTTCCGCGGAATCCGAATTGATTCAATGAAATCCGCTTAGGAATTGAGTCAATAGAGATTCAATG
AAAATTAGAGATTCAATGAAGCTTCTCTCCCCATCGCTCCCCCCAATCGATTGGGACGATTGGGT
ACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCACTTCTCGTCGGATTCTGGGGGT
ATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATACCCCATCGACTGATTGGGATCA
TCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCCAATCGATTGGGGAAGGAAGAA
GCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTGCTCGAACAAGTTAGCTTGGTT
ACGTGTTCGAATGTGTTTCCCCGACTGGGCGGGAGTCCTTTGCCT
Found at i:139205 original size:25 final size:25
Alignment explanation
Indices: 139170--139224 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
139160 TTTCCGCTCC
*
139170 CTCTCTCGAAGATGGGAAGCTCTCT
1 CTCTCTCGAAGAAGGGAAGCTCTCT
*
139195 CTCTCTGGAAGAAGGGAAGCTCTCT
1 CTCTCTCGAAGAAGGGAAGCTCTCT
139220 CTCTC
1 CTCTC
139225 GGGCGGGCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (25 bp):
CTCTCTCGAAGAAGGGAAGCTCTCT
Left flanking sequence: Indices 138670 -- 139169
AATCGATTGGGACGATTGGGTACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCAC
TTCTCGTCGGATTCTGGGGGTATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATAC
CCCATCGACTGATTGGGATCATCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCC
AATCGATTGGGGAAGGAAGAAGCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTG
CTCGAACAAGTTAGCTTGGTTACGTGTTCGAATGTGTTTCCCCGACTGGGCGGGAGTCCTTTGCC
TAGATGCATGGGAGCCACTTCTTGCTCGGACTTTGGGGGCACCTCGCCGAACACCAATGACCAAG
AGCACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGCGAAAAGGCC
TTGCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCC
Right flanking sequence: Indices 139225 -- 139724
GGGCGGGCGGGTGGAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAA
CTCTCTCTTGCTCTCTCTCTCTCCCAAGCACTCTCTCGGGTGGAAGACACTCTCTTTTGCTCTCT
CTCTCCCCGCTCTCGGGCGGGAACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGG
GAATAAATTCTGGGGGGTGGAAGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGG
GCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCGTCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGG
ATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCTGGGTTCGGAGTTTTCCGTTCCAG
GTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTA
AATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGCAGG
Found at i:139511 original size:20 final size:20
Alignment explanation
Indices: 139486--139526 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
139476 ATCGATTGGG
139486 CGGAGTTTCCGTCTCTCTCT
1 CGGAGTTTCCGTCTCTCTCT
139506 CGGAGTTTCCGTCTCTCTCT
1 CGGAGTTTCCGTCTCTCTCT
139526 C
1 C
139527 TCGGTTCGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.37, G:0.20, T:0.39
Consensus pattern (20 bp):
CGGAGTTTCCGTCTCTCTCT
Left flanking sequence: Indices 138986 -- 139485
TCCTTTGCCTAGATGCATGGGAGCCACTTCTTGCTCGGACTTTGGGGGCACCTCGCCGAACACCA
ATGACCAAGAGCACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGC
GAAAAGGCCTTGCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCCCTCTCTCGAAG
ATGGGAAGCTCTCTCTCTCTGGAAGAAGGGAAGCTCTCTCTCTCGGGCGGGCGGGTGGAACCCCT
TACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAACTCTCTCTTGCTCTCTCTCTC
TCCCAAGCACTCTCTCGGGTGGAAGACACTCTCTTTTGCTCTCTCTCTCCCCGCTCTCGGGCGGG
AACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGGGAATAAATTCTGGGGGGTGGA
AGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGGG
Right flanking sequence: Indices 139527 -- 140026
TCGGTTCGGGGGTGGAAGAATGGATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCT
GGGTTCGGAGTTTTCCGTTCCAGGTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTC
TCTCCCTCTCGGGCGTTAAATTAAATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGC
AGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGAAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGGGATAAATTTCAAATTCTTGG
ATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGAC
Found at i:139588 original size:21 final size:21
Alignment explanation
Indices: 139562--139629 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
139552 TCCCCTTCCC
139562 TTCCGTTCTGGGTTCGGAGTT
1 TTCCGTTCTGGGTTCGGAGTT
139583 TTCCGTTCTGGGTTCGGAGTT
1 TTCCGTTCTGGGTTCGGAGTT
** *
139604 TTCCGTTCCAGGTTCAGAG-T
1 TTCCGTTCTGGGTTCGGAGTT
139624 TTCCGT
1 TTCCGT
139630 CTCTCTCTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 7 0.16
21 37 0.84
ACGTcount: A:0.07, C:0.22, G:0.29, T:0.41
Consensus pattern (21 bp):
TTCCGTTCTGGGTTCGGAGTT
Left flanking sequence: Indices 139062 -- 139561
CACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGCGAAAAGGCCTT
GCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCCCTCTCTCGAAGATGGGAAGCTC
TCTCTCTCTGGAAGAAGGGAAGCTCTCTCTCTCGGGCGGGCGGGTGGAACCCCTTACCCCCTATC
GGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAACTCTCTCTTGCTCTCTCTCTCTCCCAAGCACT
CTCTCGGGTGGAAGACACTCTCTTTTGCTCTCTCTCTCCCCGCTCTCGGGCGGGAACAAACTCTG
GAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGGGAATAAATTCTGGGGGGTGGAAGAATGGATTC
CCCAATCGATTGGGCCGAGCTCGAATCGATTGGGCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCG
TCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGGATTCCCCTTCCC
Right flanking sequence: Indices 139630 -- 140129
CTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTAAATTCAATTAATTTT
AAAGCTCTCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGT
CCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTC
CGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAA
GGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAG
GAGTTGGGATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCG
CCGGGACCGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGA
ACCCCACCGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTA
Found at i:139867 original size:9 final size:9
Alignment explanation
Indices: 139855--139883 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
139845 CCGACCGAAG
139855 GGAGGAGTT
1 GGAGGAGTT
139864 GGAGGAGTT
1 GGAGGAGTT
139873 GGAGGAGTT
1 GGAGGAGTT
139882 GG
1 GG
139884 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 139355 -- 139854
CTCTCCCCGCTCTCGGGCGGGAACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGG
GAATAAATTCTGGGGGGTGGAAGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGG
GCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCGTCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGG
ATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCTGGGTTCGGAGTTTTCCGTTCCAG
GTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTA
AATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 139884 -- 140383
TCCGAAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TGGGAGGAGTTGGGATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCT
GGCCCGCCGGGACCGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGAC
GAACGAACCCCACCGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACT
CACTTGACAGAGTGTTCCCTCTCACAGAAGGGGTCTATTGTACAAGTTGTGTTTTATTGGTTCGG
GGAAGATTTCAGAGAAGGGAAGGTAGGGTTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGAGGTT
CGGGGAGGGTTTCAGGGAGGGGGCCACGCAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGA
CACCCTCCCCCCCCGTCCCACGGCCCGCCATCATCGATTCTTGCT
Found at i:140253 original size:34 final size:34
Alignment explanation
Indices: 140202--140288 Score: 131
Period size: 34 Copynumber: 2.6 Consensus size: 34
140192 GTGTTTTATT
* *
140202 GGTTCGGGGAAGATTTCAGAGAAGGGAAGGTAG-
1 GGTTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
*
140235 GGTTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGA
1 GG-TTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
140270 GGTTCGGGGAGGGTTTCAG
1 GGTTCGGGGAGGGTTTCAG
140289 GGAGGGGGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
33 2 0.04
34 45 0.92
35 2 0.04
ACGTcount: A:0.23, C:0.07, G:0.49, T:0.21
Consensus pattern (34 bp):
GGTTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
Left flanking sequence: Indices 139702 -- 140201
TCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACG
AAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGG
GATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGAC
CGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGAACCCCAC
CGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACTCACTTGACAGAGT
GTTCCCTCTCACAGAAGGGGTCTATTGTACAAGTTGTGTTTTATT
Right flanking sequence: Indices 140289 -- 140788
GGAGGGGGCCACGCAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGACACCCTCCCCCCCCG
TCCCACGGCCCGCCATCATCGATTCTTGCTCCCGGAACAAGGCCTCTGTGTGCTTCGAAGGCTGG
GCGATGGGTCTCTTCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCTAGCTAGG
GAGAAAGAGCTAGGGAGAAAGCTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTA
TCGTCTGATTATCCGAGTTATCGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTT
ATCGTCTGATCTATCGGAAAGAATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCG
GGTTCAATCCCCCGGGCTGGGAGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATA
GATCTCTCGTGCAAGGTGTCCATCGTTGATTCTTTCTCCCGCTGG
Found at i:140496 original size:14 final size:14
Alignment explanation
Indices: 140477--140504 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
140467 TCTCTTCCCT
140477 AGCTAGGGAGAAAG
1 AGCTAGGGAGAAAG
140491 AGCTAGGGAGAAAG
1 AGCTAGGGAGAAAG
140505 CTTCCCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.43, T:0.07
Consensus pattern (14 bp):
AGCTAGGGAGAAAG
Left flanking sequence: Indices 139977 -- 140476
CTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGACCGGAGGTGGGGTGAG
TGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGAACCCCACCGACCGGTCCCTACC
ATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACTCACTTGACAGAGTGTTCCCTCTCACAGA
AGGGGTCTATTGTACAAGTTGTGTTTTATTGGTTCGGGGAAGATTTCAGAGAAGGGAAGGTAGGG
TTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGAGGTTCGGGGAGGGTTTCAGGGAGGGGGCCACG
CAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGACACCCTCCCCCCCCGTCCCACGGCCCGC
CATCATCGATTCTTGCTCCCGGAACAAGGCCTCTGTGTGCTTCGAAGGCTGGGCGATGGGTCTCT
TCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCT
Right flanking sequence: Indices 140505 -- 141004
CTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTATCGTCTGATTATCCGAGTTAT
CGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTTATCGTCTGATCTATCGGAAAG
AATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCGGGTTCAATCCCCCGGGCTGGG
AGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATAGATCTCTCGTGCAAGGTGTCC
ATCGTTGATTCTTTCTCCCGCTGGTTCAACTGCTTCTGAAGGACCGAAGCTGCTTCTGATGGTGG
CCTTGGAACTGCTGGTGGTGGGACTGGAACTTAGGCTGATAGCGCTGGGACTGCTTCTGCTGGTG
CTTAGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAACTGGAACCGCTGCTGAG
GGCACTGGAACAACGGCTACTGAAACTGGCACTGGGACTAAAGAA
Found at i:140968 original size:21 final size:22
Alignment explanation
Indices: 140929--140970 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
140919 TGATAGCACT
140929 GCTGCTGGTGGCAACTGGAACC
1 GCTGCTGGTGGCAACTGGAACC
140951 GCTGCTGAG-GGC-ACTGGAAC
1 GCTGCTG-GTGGCAACTGGAAC
140971 AACGGCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 10 0.53
23 1 0.05
ACGTcount: A:0.19, C:0.26, G:0.38, T:0.17
Consensus pattern (22 bp):
GCTGCTGGTGGCAACTGGAACC
Left flanking sequence: Indices 140429 -- 140928
TCTTCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCTAGCTAGGGAGAAAGAGC
TAGGGAGAAAGCTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTATCGTCTGATT
ATCCGAGTTATCGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTTATCGTCTGAT
CTATCGGAAAGAATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCGGGTTCAATCC
CCCGGGCTGGGAGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATAGATCTCTCGT
GCAAGGTGTCCATCGTTGATTCTTTCTCCCGCTGGTTCAACTGCTTCTGAAGGACCGAAGCTGCT
TCTGATGGTGGCCTTGGAACTGCTGGTGGTGGGACTGGAACTTAGGCTGATAGCGCTGGGACTGC
TTCTGCTGGTGCTTAGGAACTGATTCAACGTCGACTGATAGCACT
Right flanking sequence: Indices 140971 -- 141470
AACGGCTACTGAAACTGGCACTGGGACTAAAGAAGCTGATGGCACTGGCACAGAAGCTGCTGTTG
CTGGTGGCGTTGAAGCGGCAAGCTGAGGCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCG
TTCACAAGCCTGTAAGGCTCATCTGGAGGTCTCTCCGTTAATGCTTGGGTTGAAAGGGAAAGGGA
AGGCACTGCAGGGAAGGGGGAGAAGCGGGAAGGTTTGGATTGGTGGAAGGGCCAACAAAGGCGAA
GCCTATCCATCCTGACCTGTGCCTCTTTGCCTCACCATCTTCACCACCATGTCAATCCCATCTTC
GATGAAAGCGGTGTGTAGGTTAGGTTTTGGCATCCATCGAGGCAAGCAGGAAAGATGAGGGACTG
AAGGAAAAAGGACTTAGGCGGGTGTAACATATTTTTGGGGGGGTTATTCCGGAACCCCCTCTCTC
ATTCGAGAAGACCATGCTTTGTTGAATTAGGGCTGGCTGAGGTGC
Found at i:141713 original size:9 final size:9
Alignment explanation
Indices: 141701--141745 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
141691 TCCGACCGAA
141701 GGGAGGAGT
1 GGGAGGAGT
141710 GGGAGGAGT
1 GGGAGGAGT
*
141719 GGGGGGAGT
1 GGGAGGAGT
*
141728 GGGGGGAGT
1 GGGAGGAGT
141737 GGGAGGAGT
1 GGGAGGAGT
141746 TGGTCCTCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.71, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 141201 -- 141700
TGGATTGGTGGAAGGGCCAACAAAGGCGAAGCCTATCCATCCTGACCTGTGCCTCTTTGCCTCAC
CATCTTCACCACCATGTCAATCCCATCTTCGATGAAAGCGGTGTGTAGGTTAGGTTTTGGCATCC
ATCGAGGCAAGCAGGAAAGATGAGGGACTGAAGGAAAAAGGACTTAGGCGGGTGTAACATATTTT
TGGGGGGGTTATTCCGGAACCCCCTCTCTCATTCGAGAAGACCATGCTTTGTTGAATTAGGGCTG
GCTGAGGTGCCAATCGGAGGCTTTTTTCTTGCCAAAACGAGCGTTTTGGAAAGAAAAAAGGTTGG
GCGTTTAAATGACTTTAAAGTCGCTTCCCGGCCTTTTTGCGCAAATTCTCAAAAAGGGGATTCAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 141746 -- 142245
TGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCC
GACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGGTAATTTGCT
TGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGG
GGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAA
TGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCAT
TAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAAC
CTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCTACC
Found at i:142178 original size:35 final size:35
Alignment explanation
Indices: 142134--142202 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
142124 GCGGTTAATC
142134 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
142169 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
142203 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 141634 -- 142133
GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGG
ACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTCTCCCTATCGG
TCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGGGG
AGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGGTAATTTGCTTGAATTTAAGCGCTCCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGC
GGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 142203 -- 142702
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACC
GGGAGGAGTTGGTTTTGTTGGCCTTTAGGCCACCCGGGGCGCGTTAGCGCTGACAACCAACTCCT
CCCTGTCGGTCGGAGTTGCCCTTCGGGCCCTGGGTTCCCTGCCTACGGCATTCGTCACCAACCGA
CTTGCGGGAACAACTTACTATCTTTCCTTGAAAACCACGGCGAGAATGCTCCCGAATAGCGTTCA
GTGCTTCTAACTGAATCTCTATTTGTTGGCATGGCACAGCTTGCACCGTTCGTTCGCACAACGGT
GAGCGCTCCGCCGTCTCATTCGGACATGATTCTCCAATCATTTGCGTACCTGAGCGCAAGCTGAG
TAATGGGGATTCATGCTGTTCCTTGAACTCAGACCACAGAGCTTCTTGAGAACCAGGAGTATGCT
GTAGATCTGTTTGAATGCCTCCGGCCCTCGCCTCAGAAGTCGCTC
Found at i:142252 original size:22 final size:22
Alignment explanation
Indices: 142226--142274 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
142216 CGAGCGAAGC
142226 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
142248 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
142270 GAGGA
1 GAGGA
142275 GTTGGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 141726 -- 142225
GTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAG
TGGGTCCGATAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCG
CGAAAACCGGGTAATTTGCTTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTTGC
CCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
TAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAA
GGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAA
GGAAATTAAATTAAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGC
Right flanking sequence: Indices 142275 -- 142774
GTTGGTTTTGTTGGCCTTTAGGCCACCCGGGGCGCGTTAGCGCTGACAACCAACTCCTCCCTGTC
GGTCGGAGTTGCCCTTCGGGCCCTGGGTTCCCTGCCTACGGCATTCGTCACCAACCGACTTGCGG
GAACAACTTACTATCTTTCCTTGAAAACCACGGCGAGAATGCTCCCGAATAGCGTTCAGTGCTTC
TAACTGAATCTCTATTTGTTGGCATGGCACAGCTTGCACCGTTCGTTCGCACAACGGTGAGCGCT
CCGCCGTCTCATTCGGACATGATTCTCCAATCATTTGCGTACCTGAGCGCAAGCTGAGTAATGGG
GATTCATGCTGTTCCTTGAACTCAGACCACAGAGCTTCTTGAGAACCAGGAGTATGCTGTAGATC
TGTTTGAATGCCTCCGGCCCTCGCCTCAGAAGTCGCTCTGATAGTGTCACCAAGAGTCTTTTGAC
TAGAGGGAACAAAACCTACCAAACAAACAGCTACTAGTATTTCTT
Found at i:143635 original size:48 final size:48
Alignment explanation
Indices: 143580--143674 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
143570 GGTCCCCACA
*
143580 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
*
143628 AGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGG
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGG
143675 GGGCGCTACT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.21, G:0.41, T:0.09
Consensus pattern (48 bp):
AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
Left flanking sequence: Indices 143080 -- 143579
AAGAATTGAGGGAGCCAGTCAAAGGCTACTGGAACACCAGATACGAAGACTACCCAAGCTAATGA
TAAAGGCAAGAAGACTTTCCGGCCGAGTCTCATTGGTTAATCATAACGATATCGTGAAAATGCTG
CACAAACCCATATATGTACGAACGGAAAGAAAGGAACCTTAATACTGAACCGGATTGAGCCCGGA
ATCGCCTGTAGAAGAGGAAAATCTAAGATAGGCAGCCAACCCCCTGGAGAAAGCAATGTGCATAG
ACTAGGAGAGTAAGGGCGCAGCTCCTTAAAGGCCCTGCCGCCCTTATTAGGTGTATCCACACCCT
TCTCAAAGAACCGTACGTGACACTCTCGCGTCATACGGCTCCGTCCCGGATTGAGTCTCCTCCCC
TCTAACCAACGCAACGTCTAGGTCTTCGAACCTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCA
CTTGTGGGTGACCCATACCATACCCTTGAGAAGGGGGTCCCCACA
Right flanking sequence: Indices 143675 -- 144174
GGGCGCTACTTTAAACCCCCGGGGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCGGTAGGTCAGAGTTGTCCTCGCCTCGGACCCGCCCTCCGG
ACCAACTCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGG
GCCCTACAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTC
TTCCCGGCCCTGCCGGGAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAA
AGTGCGAAGGGGAGCGGGAGAAGAGGCCCGCCCCCCTAGCTCCCG
Found at i:143795 original size:31 final size:33
Alignment explanation
Indices: 143727--143796 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 33
143717 CCCCACTCCT
*
143727 CCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCAGAGTTGTCCTCAC-TCG-TCGGA
*
143762 CCCGGTAGGTCAGAGTTGTCCTCGC-C-TCGGA
1 CCCGGTAGGTCAGAGTTGTCCTCACTCGTCGGA
143793 CCCG
1 CCCG
143797 CCCTCCGGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 9 0.27
33 1 0.03
35 23 0.70
ACGTcount: A:0.11, C:0.33, G:0.31, T:0.24
Consensus pattern (33 bp):
CCCGGTAGGTCAGAGTTGTCCTCACTCGTCGGA
Left flanking sequence: Indices 143227 -- 143726
ACGAACGGAAAGAAAGGAACCTTAATACTGAACCGGATTGAGCCCGGAATCGCCTGTAGAAGAGG
AAAATCTAAGATAGGCAGCCAACCCCCTGGAGAAAGCAATGTGCATAGACTAGGAGAGTAAGGGC
GCAGCTCCTTAAAGGCCCTGCCGCCCTTATTAGGTGTATCCACACCCTTCTCAAAGAACCGTACG
TGACACTCTCGCGTCATACGGCTCCGTCCCGGATTGAGTCTCCTCCCCTCTAACCAACGCAACGT
CTAGGTCTTCGAACCTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCACTTGTGGGTGACCCATA
CCATACCCTTGAGAAGGGGGTCCCCACAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGG
GAGGAGTTGGCAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGCGCT
ACTTTAAACCCCCGGGGGCCGGCAAGGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 143797 -- 144296
CCCTCCGGACCAACTCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCC
TTCGGAGGGCCCTACAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCA
GGTGGTTCTTCCCGGCCCTGCCGGGAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCC
TGCCCAAAAGTGCGAAGGGGAGCGGGAGAAGAGGCCCGCCCCCCTAGCTCCCGGGGTTTCGAAGT
GGGGACCCGGGTTGTCCCTTAGGACAAGCGCCTAAGCGCTACTTCCGTAACAAAGGGTGGCCTTG
CCGGGCCAACGTCGCCCCGCCACCACCACCACCCATGAATGGGTG
Found at i:143820 original size:9 final size:9
Alignment explanation
Indices: 143806--143834 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
143796 GCCCTCCGGA
143806 CCAACTCCT
1 CCAACTCCT
143815 CCAACTCCT
1 CCAACTCCT
143824 CCAACTCCT
1 CCAACTCCT
143833 CC
1 CC
143835 CGGTAGGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 143306 -- 143805
GCAGCCAACCCCCTGGAGAAAGCAATGTGCATAGACTAGGAGAGTAAGGGCGCAGCTCCTTAAAG
GCCCTGCCGCCCTTATTAGGTGTATCCACACCCTTCTCAAAGAACCGTACGTGACACTCTCGCGT
CATACGGCTCCGTCCCGGATTGAGTCTCCTCCCCTCTAACCAACGCAACGTCTAGGTCTTCGAAC
CTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCACTTGTGGGTGACCCATACCATACCCTTGAGA
AGGGGGTCCCCACAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGCAGG
GTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGCGCTACTTTAAACCCCCG
GGGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCGGTAGGTCAGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGA
Right flanking sequence: Indices 143835 -- 144334
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACT
CCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACAGGGCAACTCCGAATTCCGATAG
GGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTCTTCCCGGCCCTGCCGGGAAGCCGGCCTTTC
TCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAAAGTGCGAAGGGGAGCGGGAGAAGAGGCCCG
CCCCCCTAGCTCCCGGGGTTTCGAAGTGGGGACCCGGGTTGTCCCTTAGGACAAGCGCCTAAGCG
CTACTTCCGTAACAAAGGGTGGCCTTGCCGGGCCAACGTCGCCCCGCCACCACCACCACCCATGA
ATGGGTGGTTAGGGTCCTCCGACAGGAGGACAACTCCGACCGATA
Found at i:144505 original size:40 final size:40
Alignment explanation
Indices: 144451--144541 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
144441 TTGGAGGAGT
144451 GGGAGG-GTTGGTCCGATAGGACCACTCCGAATTCCGAGA
1 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
*
144490 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGATA
1 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
144530 GGGAGGAGTTGG
1 GGGAGGAGTTGG
144542 GCGTTTAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 6 0.12
40 44 0.88
ACGTcount: A:0.23, C:0.20, G:0.38, T:0.19
Consensus pattern (40 bp):
GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
Left flanking sequence: Indices 143951 -- 144450
CCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACAGGGCAACT
CCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTCTTCCCGGCCCTGCCGG
GAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAAAGTGCGAAGGGGAGCG
GGAGAAGAGGCCCGCCCCCCTAGCTCCCGGGGTTTCGAAGTGGGGACCCGGGTTGTCCCTTAGGA
CAAGCGCCTAAGCGCTACTTCCGTAACAAAGGGTGGCCTTGCCGGGCCAACGTCGCCCCGCCACC
ACCACCACCCATGAATGGGTGGTTAGGGTCCTCCGACAGGAGGACAACTCCGACCGATAGGGTCC
GAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 144542 -- 145041
GCGTTTAAAGTGCTTTAGCCAACTCCTTTAAACCCCACCACCACCTACAAAGTGGGTGGGGTTTA
AAGGAGGTTGGGCTTCCGTCAGGAAGCCCGCAGGGGGCCCCCCATGCGGAGCGCGTAGCGCCAAC
TTTATGAAAACGTGAAAGAGTGGGAGCGTGAAAGCTCCCACGCTTTCACGCTCCCACTTCGGAAT
TATTGCGTAGCGTTTTCACTTCAGAAGTGCCCATCCCCTGATGCGGCCCCAAAAGGGGGGAAAGC
AGTGCGCTTCCCCCCGGCCCCCCGTATGAAAGACCGCGCCTATTGCGCTTCCCCTACCTTTGGGC
AGAGACCGCGCCTATCTAGATTTACAAGACGCGACGCGTTGGATGCGTTTTCCCCGGCTCCGTTG
CCTACTGGGGGATAGTTGAAGCTCGCTTCTTTTCCATCGTTTTCTTGGTCCTCTCGACCCCTGGC
TGGGGCCCCTACCCCAGCCAGTGGCTAAAGCCCGTCATCTCGAAT
Found at i:147353 original size:31 final size:31
Alignment explanation
Indices: 147318--147379 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
147308 CGGACCCTGG
*
147318 CAACTCCTCCCGGTAGGTCGGAGTTGTCCTC
1 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
147349 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
1 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
147380 GCTTCGCTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.13, C:0.35, G:0.27, T:0.24
Consensus pattern (31 bp):
CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
Left flanking sequence: Indices 146818 -- 147317
ACAATGACGTGAGAGGGCATTTATGCGGGAAGCTACGCTTCCCATTTTTTGAGGAAGGGCGAAGC
GGATACGTAAAACGAAAGTTTCCACTTAAAAACATCTTGTACGTCAGACGGTTTAAAGGGCAGAG
CAGCCCCCCGTGAGGGGGGCTGCTCGCGGGTGGCCTAAAGGCCACCCTGCCGGGGGCCAGGTATG
GGGACGGGGCAGGGCAGGCCAGCCTGCCGGGCTGCCCGCTTAAAGGGGGCTGCTACGCGCCCCCC
TCTCCCTATCGGTCGAGTGGTTTGCTGGCGCCCCTGCCCTTTAAACGCCAACTCCCCTGGCTCGG
AATTATTTGTTGCCAACTCCTCCCTAGGAATTATTTGTTGTCTTCCAACTCCCCCCACTCCTCCA
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACC
GATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTGG
Right flanking sequence: Indices 147380 -- 147879
GCTTCGCTCGGACCCTACAGGTCGGACCAACTCCTCCCTTCGGGATTCGGAGTTGGCCCGGGTCC
GACTACCGGAGGACAACTCCGACCGAGGGGAGGAGTTGGCCCAACTCCTCCCTTCGGTCGGAGTT
GTCCTCGCCTCGGACCCTTGATGCCCATACCACCCCACTTTCTTTATAGATGGTGGTGGTATGGG
CATCAAAGGCGACAGTGGTTTAAAGGCCAACTTTGATCGTTTTCACTTCAGAAGTGCCCTTCCTT
AACGAAGGGGCGTTAGCGTAACCCCGAGTTCGGGTGGCAGGCCACCCTGCCCCATCCGGCGGGGG
TACCACATACCCGCGAAGCGCTACGCGCCCTAGAGCGTAGCGAAGGATTCTAAAAAGGGGCGGTC
AGTTCGGCCGCCCCCCATAACCGGCCCACGATGTTCCCACAGCAGGTGGTTCTTCCCTCAGGGAA
GCCGGCCTTCCCGCCTTTATTAGTCCTTATCCCCGCTCTTTCTGT
Found at i:148676 original size:46 final size:46
Alignment explanation
Indices: 148626--148771 Score: 213
Period size: 46 Copynumber: 3.4 Consensus size: 46
148616 ACAACTCCGA
148626 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
148672 CCGATAGGGAGGAGTTGG---TCCGA-AGGA---CAACTCCG-A--
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
148708 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
*
148754 CAGATAGGGAGGAGTTGG
1 CCGATAGGGAGGAGTTGG
148772 TCCGAAGGAC
Statistics
Matches: 89, Mismatches: 1, Indels: 20
0.81 0.01 0.18
Matches are distributed among these distances:
36 18 0.20
38 1 0.01
39 13 0.15
40 4 0.04
42 4 0.04
43 13 0.15
44 1 0.01
46 35 0.39
ACGTcount: A:0.25, C:0.21, G:0.37, T:0.16
Consensus pattern (46 bp):
CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
Left flanking sequence: Indices 148126 -- 148625
CACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATACGTAGAAGACTTTGGCTTGAA
CCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAGGTTTGGCGCTTAAAAGCGCC
TAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGGATTGTTTCTTTCATGATCGA
GTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAATCGATTCACCACGATGAGAT
ATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAAAGTGCAGTCCGTGACGGCCT
AGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCAGCCATTTCGACTCGTGGGCT
GGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGATGACTCGGTGAGAAGCCTTC
ACGTCGAAGGGCAGGGGCCCCCAAGGGTCCGAAGGACAACTCCGA
Right flanking sequence: Indices 148772 -- 149271
TCCGAAGGACCACTCCGACCGATAGGGAGGCCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGA
GGACAACTCCGGCCTACCGGGAGGAGTTGGGGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTC
CCGCCAAGGGGGGTTAAAAGTAGCGCCCCCCTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGG
TTTTACTTTCCGGCGCGTAGCGCTTTCTCGGCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGC
GTCAATGCCGTCAAGAGTTTCTCTCTGTGCGTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGG
ATCTATTCGGGGTCTCGTTGTAAGCTGCTACGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTC
GTTTCCCTGGGAAATTGCCCTTGCCGGGCTTTACCACCCTTGCTATCACCTATCTGACTAAATAT
CGGTTCCATGCATTGTTCGTTCACTCGTTCTTCGACCGGGTCATC
Found at i:148733 original size:39 final size:36
Alignment explanation
Indices: 148606--148801 Score: 194
Period size: 46 Copynumber: 4.9 Consensus size: 36
148596 GGCCCCCAAG
148606 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
148642 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTT
1 GG---TCCGA-AGGA---CAACTCCG-A--CCGATAGGGAGGAGTT
148688 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
*
148724 GGCCCTCCGATAGGAGGGCAACTCCGAATTCAGATAGGGAGGAGTT
1 GG---TCCGA-AGGA---CAACTCCG-A--CCGATAGGGAGGAGTT
*
148770 GGTCCGAAGGACCACTCCGACCGATAGGGAGG
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGG
148802 CCAACTCCGA
Statistics
Matches: 137, Mismatches: 3, Indels: 40
0.76 0.02 0.22
Matches are distributed among these distances:
36 31 0.23
38 2 0.01
39 25 0.18
40 8 0.06
42 8 0.06
43 26 0.19
44 2 0.01
46 35 0.26
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (36 bp):
GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
Left flanking sequence: Indices 148106 -- 148605
TTATGCTCCCTTGGTAGGGCCACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATAC
GTAGAAGACTTTGGCTTGAACCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAG
GTTTGGCGCTTAAAAGCGCCTAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGG
ATTGTTTCTTTCATGATCGAGTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAA
TCGATTCACCACGATGAGATATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAA
AGTGCAGTCCGTGACGGCCTAGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCA
GCCATTTCGACTCGTGGGCTGGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGA
TGACTCGGTGAGAAGCCTTCACGTCGAAGGGCAGGGGCCCCCAAG
Right flanking sequence: Indices 148802 -- 149301
CCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGGCCTACCGGGAGGAGTTGG
GGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTCCCGCCAAGGGGGGTTAAAAGTAGCGCCCCC
CTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGGTTTTACTTTCCGGCGCGTAGCGCTTTCTCG
GCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGCGTCAATGCCGTCAAGAGTTTCTCTCTGTGC
GTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGGATCTATTCGGGGTCTCGTTGTAAGCTGCTA
CGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTCGTTTCCCTGGGAAATTGCCCTTGCCGGGCT
TTACCACCCTTGCTATCACCTATCTGACTAAATATCGGTTCCATGCATTGTTCGTTCACTCGTTC
TTCGACCGGGTCATCCTACTTCAAAGGTATACTGCATTTTCGTTC
Found at i:148743 original size:82 final size:82
Alignment explanation
Indices: 148606--148801 Score: 374
Period size: 82 Copynumber: 2.4 Consensus size: 82
148596 GGCCCCCAAG
148606 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
*
148671 TCCGATAGGGAGGAGTT
66 TCAGATAGGGAGGAGTT
148688 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
148753 TCAGATAGGGAGGAGTT
66 TCAGATAGGGAGGAGTT
*
148770 GGTCCGAAGGACCACTCCGACCGATAGGGAGG
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGG
148802 CCAACTCCGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 112 1.00
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (82 bp):
GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
TCAGATAGGGAGGAGTT
Left flanking sequence: Indices 148106 -- 148605
TTATGCTCCCTTGGTAGGGCCACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATAC
GTAGAAGACTTTGGCTTGAACCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAG
GTTTGGCGCTTAAAAGCGCCTAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGG
ATTGTTTCTTTCATGATCGAGTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAA
TCGATTCACCACGATGAGATATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAA
AGTGCAGTCCGTGACGGCCTAGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCA
GCCATTTCGACTCGTGGGCTGGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGA
TGACTCGGTGAGAAGCCTTCACGTCGAAGGGCAGGGGCCCCCAAG
Right flanking sequence: Indices 148802 -- 149301
CCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGGCCTACCGGGAGGAGTTGG
GGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTCCCGCCAAGGGGGGTTAAAAGTAGCGCCCCC
CTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGGTTTTACTTTCCGGCGCGTAGCGCTTTCTCG
GCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGCGTCAATGCCGTCAAGAGTTTCTCTCTGTGC
GTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGGATCTATTCGGGGTCTCGTTGTAAGCTGCTA
CGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTCGTTTCCCTGGGAAATTGCCCTTGCCGGGCT
TTACCACCCTTGCTATCACCTATCTGACTAAATATCGGTTCCATGCATTGTTCGTTCACTCGTTC
TTCGACCGGGTCATCCTACTTCAAAGGTATACTGCATTTTCGTTC
Found at i:150727 original size:34 final size:34
Alignment explanation
Indices: 150689--150753 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
150679 CCTCCCGGTA
150689 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
150723 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
150754 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 150189 -- 150688
CCCCCACCCCTTATTAGGGGGTTTAAAGTAGCGCCCCCAACTCCTCCCTTCGGTCGGAGTGGTCC
TCGCTTCGCTCGGACCCTGGCAACTCTTCCCGGTAGGTCGGAGTTGCCCTCCTGCCGGAGGGCAG
GGGGGCGCTACTTTAAACCCCCCGGGGCCGAAGGCCCCCTGGCAACTCGTTAAAGTCTAAAGTCA
ATTAATTTTCGCGCTGAATTCAACTAATTTTCAATTAATTTAAAATTAGTTGAATTCAGACTTTT
AAGTCGAAAATTCATTGAATTTGAACGGAATTCAAATTTGTTGTCCCCCAACTCCTCCCTCCGGT
CGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGAATTCGGAGTTGTCCTCCCGGTAGGCCGGCAG
TTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 150754 -- 151253
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCC
TCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTGCAGAAAGTACTCCATGGGGAATATTA
TGTCGCACCCCCATGTTGTTGGGGGCGATCGAGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTT
TTCCGTCCGGAGTGCTTGTCCAGGGAGGGAGTTTACTCGACCCCCTCGTTTCGGTAGGAATTAGT
CCCCTACGAGAGATGATCCCGGGACATTGGCTTCCGCCAACAGTG
Found at i:151007 original size:39 final size:42
Alignment explanation
Indices: 150919--151023 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 42
150909 AAAGGTTCTT
*
150919 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG--CTCCTGTC-G-G
150965 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG-TCCT-TC-G
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGCTCCTGTCGG
*
151004 GACCAACTCCTCCCTATCGG
1 GACCAACTCCTCCCTCTCGG
151024 TCGGAGTTGC
Statistics
Matches: 57, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
39 20 0.35
42 2 0.04
43 4 0.07
46 31 0.54
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.24
Consensus pattern (42 bp):
GACCAACTCCTCCCTCTCGGAATTCGGAGTGGCTCCTGTCGG
Left flanking sequence: Indices 150419 -- 150918
TAATTTAAAATTAGTTGAATTCAGACTTTTAAGTCGAAAATTCATTGAATTTGAACGGAATTCAA
ATTTGTTGTCCCCCAACTCCTCCCTCCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGAA
TTCGGAGTTGTCCTCCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGT
ACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 151024 -- 151523
TCGGAGTTGCCCTCCTTCGGAGGGCCCTGCAGAAAGTACTCCATGGGGAATATTATGTCGCACCC
CCATGTTGTTGGGGGCGATCGAGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTTTTCCGTCCGG
AGTGCTTGTCCAGGGAGGGAGTTTACTCGACCCCCTCGTTTCGGTAGGAATTAGTCCCCTACGAG
AGATGATCCCGGGACATTGGCTTCCGCCAACAGTGAACTCTTAAGGATCGCATCCCGCGCATATT
CCGCATTATAGCCCGCGACTGATTCAGCTTCTGCTTCTGGTGGATCGGACGGAGCTCGATTAGTT
TCTGCTGAGCAAGAAATGGAAAACATAATCGATACAGGAAACAAGGGAATGCCAAACCATATCTA
CTTTTACGCTATGACAATCTCACTGAAGTTACGAGAACCTACACAGATTAGTACAGTATACCGAG
AGGGGCAGGGTGGCCTTGCCGGCCACCCTAGGCGCCCGGCAAGGG
Found at i:151040 original size:39 final size:37
Alignment explanation
Indices: 150964--151044 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 37
150954 TCCTGTCGGA
* *
150964 GGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTC
1 GGACCAACTCCTCCCTATCGG-A-TCGGAGTGCTCCTTC
151003 GGACCAACTCCTCCCTATCGG-TCGGAGTTGCCCTCCTTC
1 GGACCAACTCCTCCCTATCGGATCGGAG-TG--CTCCTTC
151042 GGA
1 GGA
151045 GGGCCCTGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
36 6 0.16
37 2 0.05
39 29 0.78
ACGTcount: A:0.15, C:0.37, G:0.23, T:0.25
Consensus pattern (37 bp):
GGACCAACTCCTCCCTATCGGATCGGAGTGCTCCTTC
Left flanking sequence: Indices 150464 -- 150963
TGAATTTGAACGGAATTCAAATTTGTTGTCCCCCAACTCCTCCCTCCGGTCGGAGTTGTCCTCGC
TTCGCTCGGACCCTTCGGAATTCGGAGTTGTCCTCCCGGTAGGCCGGCAGTTAAAAGTGTTTAAA
GCTCCCTAGTACTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAA
CTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCA
ATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
CCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGA
Right flanking sequence: Indices 151045 -- 151544
GGGCCCTGCAGAAAGTACTCCATGGGGAATATTATGTCGCACCCCCATGTTGTTGGGGGCGATCG
AGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTTTTCCGTCCGGAGTGCTTGTCCAGGGAGGGAG
TTTACTCGACCCCCTCGTTTCGGTAGGAATTAGTCCCCTACGAGAGATGATCCCGGGACATTGGC
TTCCGCCAACAGTGAACTCTTAAGGATCGCATCCCGCGCATATTCCGCATTATAGCCCGCGACTG
ATTCAGCTTCTGCTTCTGGTGGATCGGACGGAGCTCGATTAGTTTCTGCTGAGCAAGAAATGGAA
AACATAATCGATACAGGAAACAAGGGAATGCCAAACCATATCTACTTTTACGCTATGACAATCTC
ACTGAAGTTACGAGAACCTACACAGATTAGTACAGTATACCGAGAGGGGCAGGGTGGCCTTGCCG
GCCACCCTAGGCGCCCGGCAAGGGCGCCTGGCCCCCCGGTCAGAA
Found at i:153081 original size:33 final size:33
Alignment explanation
Indices: 153027--153090 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
153017 CCTCCCGGTA
* *
153027 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
153060 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
153091 TTATGGGCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 152527 -- 153026
ACTTGGATAAGTCTGGAGTGCCTATCGATGCATGTCCAGGGCATATGCCTAGGGAACGGGTGGGA
AGTTTTCCAGTTCCCGGCGCCCGCCTCCTGTCATCAGTTCTTCGGCCACACCGGAGTATCCTACT
ACTATCGTTGTCCGGATCGGAAATATAGCTGTTGGCTAAGAGAGAGTTTCCTCACACCTCACATG
GGAGTCCTGCGACCTTAGACCCTTTTTCTACCAAAGTGCTAACTAAGTTACCCGTTTCGTCTCGC
CGGATATCCTCTCGTCATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCCTGCCGGAGGGCAG
GGGGGCGCTACTTTAAACCCCCCTTTAAAGGGGTGGGGGGCCTCCGGCCCCCCCGGGCCCTTTGG
GCCAGCCTCGGCCGGCAAGGCCCCCTGCCCTTGGCTAGACTCTTCCTGTTGTAGCCAGCCAACTC
CTCCCGGTAGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 153091 -- 153590
TTATGGGCCCTGAGGCTATTCGGTTCGTCCCACACGAGACTCGATCGGGCACTCATCAGCCGCCG
CCCAATCTGACCATCCCCCCGGCCCACAAGGAGAATCCCTCTATTGGCAACTCTCGGTCCGAAGG
AGACTCCCCCGATAGGGGAGGGGACTCGACCGATAGGGTCAGGTTGGCCGGCAGGGCCACCCTAG
GGCGGCCTAGCCCTGTCCGACCCACCGGGTCCGGGCGAAGCGAGGACGACTCCCCGGTTGGGAGT
TGGGGAGGTTTCGCTTTCTCTGATTCTGCTGTGCCTTCCTTTAGCCCCCAAACTCCCCTCCATCC
ATAGTTCCGTAGGGGAGGCGGAGACACGGCTTTGCTTTTCGAGTGCCCCCAGTAAATAAATGGAA
GTAAGCCCTGCGTGTTTCCGGCACAGCGTATTATCACCTACAGCCCTTTCCTCCAAGCACTTTCA
ATCGGCAACAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGC
Found at i:158474 original size:9 final size:9
Alignment explanation
Indices: 158460--158488 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
158450 CTTTAAACGC
158460 CCAACTCCT
1 CCAACTCCT
158469 CCAACTCCT
1 CCAACTCCT
158478 CCAACTCCT
1 CCAACTCCT
158487 CC
1 CC
158489 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 157960 -- 158459
AATCTACTGGGTTGTTTCCAACCGACGATTGGACGCACGATCTACTATTTACTTGATTCCCATCT
GGATTGGGCTTTCGATCTACGAGCGAACAGCTGCAGGAAGGGTGGACATTGGGAAAACGCTAGAA
TTATGAGTCGGTTACAAAAAGTCCAAATGACTCTTTATTCAGCTCTTTTTATAATGAATTAGAAT
TCAGCGCCCTTTAAAGTTCCTCAAGGAGTACCGACTTCACCCAACTCCCGTCCCCACCCACTTCA
TGGGTGGTGGTGGGGCAGGGTTGTCCGTTAGGACAAGCGCCGGGCAGTTAAAAGTAGCGCTGCCC
TTGCCAGGCCCCGGGAGTTGGCCCTCCCCCTCCCTGGGTCGGGGGGGTGTCCTCCGGACCAACTC
CTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCCTTGCGGTCCAACTCCTTTAAACCCCA
CCAACTTTGTGGGGGGGCGGGAGTAGGCTAAAGCACTTTAAACGC
Right flanking sequence: Indices 158489 -- 158988
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTGGGGGCCCCTGGCCCTGGACGTTTTGCCT
TATCCGATAGGGCGGTGGAGTGAGCCGAGTGCTTCACTTGACAGAAGCCTTTTAAAAGGGTGGCT
TTCAATGTTTGTTGCTAAATAGTCTGGCCTGCTTCGAAGGAGCATTGTTGCGCGCTTCTCTGCTT
TTAGCGATTCTTCCTGTATCTCTTGCTCGCTTCGCCGGGACTTCTCGCCCCTCTCAGTAGGGCAC
GCGCATCTGAAGCTTGCTCCGTTGCGCCCCTTTAAAAGCGCGCTCCGCTCGTTTGCTTCGATAGC
GCCTTACGTGAGAGGGGCAGAATAAGAGCTAAAGCTGCCTAGGGTGTGAGGTCTGGCTTGCGGGG
TTCTTCTCCGGCTCCACCAGCAGCCTTTATCAGCTGCTATGGTTC
Found at i:161230 original size:31 final size:29
Alignment explanation
Indices: 161192--161249 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
161182 GCCAACTCCC
161192 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
1 CCAACTCCT-CC-GTAGGTCGGAGTTGTCTT
* *
161223 CCAACTCCTCCTTCGGTCGGAGTTGTC
1 CCAACTCCTCCGTAGGTCGGAGTTGTC
161250 CTCGCCCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.56
30 2 0.08
31 9 0.36
ACGTcount: A:0.12, C:0.34, G:0.24, T:0.29
Consensus pattern (29 bp):
CCAACTCCTCCGTAGGTCGGAGTTGTCTT
Left flanking sequence: Indices 160692 -- 161191
GGCTGAATCGCGGGGGCCACCACCCCTTAAAACATGTCACTTCGCCCTTAAAAGCGTCTTTGAGT
TCACTTCTGGTGCGCAAAGCGCGTATTGAGATGCTTTTTCAATGGCCCGAACAAATTCGATACGC
GCGGGCCTCTAGGCTTCATCGGCATTCTAGGCTGGCTTGCGTCATCGACTGACTCGGAAAAAGCT
GAATCGGCTGCGAAATCGACTACGTAGGCAAAGGCTGAATTGGCATCTGAGGCCAAATCAGCTTC
ATCGGCATCGGCATTCGCTGAATCGGCATACCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTATCGGAATTATTTGTGGCCAACTCCCCCCACTCCTCCCGGTAG
GTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTGGTCCTCGCTTCGCTCGGACCCTA
CAGGTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCAACTCCC
Right flanking sequence: Indices 161250 -- 161749
CTCGCCCCTTTTAGAAGTCCCGGTGGGTCAGACCCTTATGGGCAGGGGGGCGCGTATTTAAACCC
CCTTTAAAGGGCAGCCTGGCAGGCTGACCTGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTATCGGACCCACTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTGAAG
CTGCTGACTCGGCTTCATCGGCTGAGGCTAAATTCGGCTAGATCGGCTGTAGCTGAATCGACAAG
AAGGTTACTCTAATTTAATTTAATTTAAAATTAAAGTAAATTAGCTTTTGAGTGGCGGATTGCGA
TATCGAATTCAATTCAATAGAATGCTTTCCCTTCGAACCATCGAATTCGACGTTTCCATCCAGGT
TTCTTTTCAAAGTCTTGCCCAATGAGATCTTCTCTTTCAGCAACC
Found at i:162992 original size:34 final size:34
Alignment explanation
Indices: 162951--163015 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
162941 GCTTTAAAAG
162951 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
162985 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
163016 TACCGGGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.32, T:0.09
Consensus pattern (34 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Left flanking sequence: Indices 162451 -- 162950
AAGTTCAGGTTCTTGCTTGCACCTATGTATGAAATTTTGGGACAAGTTCCGTGCTGGCCCACGAG
GAGCCGGTCCAAAGGCCGATAGGCGCACCAAAGAGCTTCCGAAGGCGGGCCTTTGGCGGACCAAG
AAATAAGGAATGCCGAAGGGCTAGGCGGCTACTTCTCTAGATGAGAAGATGTTGCGGTAGGCCTA
CCTAATCCATTCAGTCACTCGCTACTAGGCCCCGCAAACCTAGTGTACGCCTATCCCACCCCCTA
TCGGTACCCTTCCCGGTAACGCAGTGGTAGCGTTTTTGGCAGCCTAGCAGCTAGTGGCCCCCGCG
GCACCGTCCCCGTCCAACTCCTCCCGCCGGAATTCAAATTTGTTGTCCCCCAACTCCTCCAACTC
CTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAG
Right flanking sequence: Indices 163016 -- 163515
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAG
CTCCCTTTTTAGAATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCATTAATTT
TCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAACCTCAGC
GGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCG
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTT
AAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGTGGTC
CTCCTGTCGGAGGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCG
Found at i:163182 original size:35 final size:35
Alignment explanation
Indices: 163138--163206 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
163128 GCGGTTAATC
163138 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
163173 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
163207 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 162638 -- 163137
TAGGCCTACCTAATCCATTCAGTCACTCGCTACTAGGCCCCGCAAACCTAGTGTACGCCTATCCC
ACCCCCTATCGGTACCCTTCCCGGTAACGCAGTGGTAGCGTTTTTGGCAGCCTAGCAGCTAGTGG
CCCCCGCGGCACCGTCCCCGTCCAACTCCTCCCGCCGGAATTCAAATTTGTTGTCCCCCAACTCC
TCCAACTCCTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAG
TGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCTCCCTTTTTAG
AATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 163207 -- 163706
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCC
CTATCGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGCCC
TCCTATCGGAGGGCCCTGGTAGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAA
AGAGCTTTTGGCTTCGAGAACAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAAC
TATGTTACTTTAATTTAATTTAATTTCATTGAAAATTAAAGGTTC
Found at i:163447 original size:43 final size:44
Alignment explanation
Indices: 163372--163543 Score: 134
Period size: 46 Copynumber: 4.0 Consensus size: 44
163362 AAAGGTTCTT
* *
163372 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTATCGG-A-TCGGAGTGGTCCTCCTGTCGGAG
163418 GACCAACTCCTCCCTATCGG-TCGGAGTGG---TCCT-TC---G
1 GACCAACTCCTCCCTATCGGATCGGAGTGGTCCTCCTGTCGGAG
* *
163454 GACCAACTCCTCCCTATCGG-TCGGAGTTGTCCTGACCTG--GCAG
1 GACCAACTCCTCCCTATCGGATCGGAGTGGTCCT--CCTGTCGGAG
* * *
163497 TG-CCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
1 -GACCAACTCCTCCCTATCGG-A-TCGGAGTGGTCCTCCTGTCGGAG
163543 G
1 G
163544 GCCCTGGTAG
Statistics
Matches: 105, Mismatches: 6, Indels: 31
0.74 0.04 0.22
Matches are distributed among these distances:
36 29 0.28
39 3 0.03
40 4 0.04
41 3 0.03
43 28 0.27
44 4 0.04
45 1 0.01
46 33 0.31
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.24
Consensus pattern (44 bp):
GACCAACTCCTCCCTATCGGATCGGAGTGGTCCTCCTGTCGGAG
Left flanking sequence: Indices 162872 -- 163371
GGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAG
TAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCC
GTCGCGAAAACCAGCTCCCTTTTTAGAATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGG
TTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATT
AAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 163544 -- 164043
GCCCTGGTAGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAAAGAGCTTTTGGC
TTCGAGAACAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAACTATGTTACTTTA
ATTTAATTTAATTTCATTGAAAATTAAAGGTTCTTTAGTTTTTTGAATTTGAAATAGTTTCTCGC
TTTCTTTAAAGAGTTTCTCGACTTTTTTTCCTTGAAAGCGCGTAGCGCTAAGTTGCCTGCCCTGC
CTGCCTGTGAAGGGGCTTGGATGATGGAACCAGAGAAGGTGATGGAACCAAAGTACGTGCATGAG
GGGCTTTAGCCACTGGCTGGGGTAGGGGCCCCAGCCAGGGGCGAGAAATGGTATATAGGACGTGC
GGTGCTTTCACTGCCCTGCCTTGCCTGTACCGCCTTCCCTGCCCTTCGGTGTGGGTGCTACGTGC
AGATATTCTGTTTTTGGGACCAGAGAAAAAGGTGGGGTTTTGCCT
Found at i:163462 original size:36 final size:36
Alignment explanation
Indices: 163417--163486 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
163407 TCCTGTCGGA
163417 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
1 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
*
163453 GGACCAACTCCTCCCTATCGGTCGGAGTTGTCCT
1 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCT
163487 GACCTGGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.14, C:0.36, G:0.24, T:0.26
Consensus pattern (36 bp):
GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
Left flanking sequence: Indices 162917 -- 163416
GAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACCACTCCGACC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGT
TGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCTCCCTTTTTAGAATTCGGTCTTTAGACACT
CGACCGAAGGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTA
ATTTTCAAGGAAATTAAATTAAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCC
GCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
CCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGA
Right flanking sequence: Indices 163487 -- 163986
GACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGT
AGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAAAGAGCTTTTGGCTTCGAGAA
CAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAACTATGTTACTTTAATTTAATT
TAATTTCATTGAAAATTAAAGGTTCTTTAGTTTTTTGAATTTGAAATAGTTTCTCGCTTTCTTTA
AAGAGTTTCTCGACTTTTTTTCCTTGAAAGCGCGTAGCGCTAAGTTGCCTGCCCTGCCTGCCTGT
GAAGGGGCTTGGATGATGGAACCAGAGAAGGTGATGGAACCAAAGTACGTGCATGAGGGGCTTTA
GCCACTGGCTGGGGTAGGGGCCCCAGCCAGGGGCGAGAAATGGTATATAGGACGTGCGGTGCTTT
CACTGCCCTGCCTTGCCTGTACCGCCTTCCCTGCCCTTCGGTGTG
Found at i:164754 original size:33 final size:33
Alignment explanation
Indices: 164700--164763 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
164690 CCTCCCGGTA
* *
164700 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
164733 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
164764 TTATGGGCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 164200 -- 164699
GAAAAGAAGAGATGGTGGCTTTGGTTCTGCCCTGCCTTGCCCGTGTGGTGGTGGGGTGGGACAGC
TTTGCGCAAGAGTGAATTGGTTTGTTGGTCAATCAATACTAAGTCTGCCTCTTCTCTTTGGACAG
GAAGGGAAAAAAGGTGAAGGTGGTGTGGGGGAGAAAAACGTCTATAGGACTTTCTGCCCTTGCTG
TCACTGAATCTGCCCCCCCTGCCCGTGAAGTGGGTGCGAAGAAACCCGCCTGTAGCTGCCTCTGA
GAGGCCCAGGCTAAGGTCTGAAATTCCTGCTTCTCTGGAGCTTTTTAAAAGGCCTGCGTGCAGAG
AACGAAGAAGGGGCGCCACTGGTCTGCGAAGCGCTACAGGTTGGGTGGGGAACTTCAGTTGAAGC
GCGTAGCGCCACTCCCTGCCCTTCCCGGGTGGGGACCGCAGAGGTTGGGTAGCGTGCCCTCTTTG
TTTTTGATGGGGGTGCCACTCCAACTCCCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 164764 -- 165263
TTATGGGCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTGTGGTGGGCT
TTCCGTTCCGTTCGGAATTCTGTGTGGACAGAAAGCGGTGGTGGGGCTGAGTCTGCTTTTCCTGC
CTTCCCTGCCTGCCTGTGATGGGACCTTTGAAGGTGCTGCCTTCCCTGCCCGTGAAGTGGGGTGG
GGCAGGCTGGGCTACAGCCCACCCGGCGGGAAGCCGTAAGGCTTGCCTGGCCATCTTTGCCTGTT
CCGAATTCAATGCGATGCGGTGCGGTGGCAGAATGCAGTGCTGCGTACGTAGCTGGCCCTTCTCT
TTCCCTTCTTCCTTCCCGTTCCGTTGGGCGTCGTCCGCCCTCCCTGCCAAAGGTGGGGTGGCCGC
TTCACTTGAAAGGGGTGGGGGTGCGCTCCCTGCCTGTAGGTGGGGGTGGGGTGCCATACAGCCTG
TGTACCACCTGAAGGAAGGTTTACGGCAAGGGGTGGGGGGCCTCC
Found at i:167507 original size:34 final size:35
Alignment explanation
Indices: 167445--167529 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 35
167435 CCTCCGATAG
*
167445 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
*
167480 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
167514 GAGGACAACTCCGACC
1 GAGGACAACTCCGACC
167530 CTCTCCCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 31 0.66
35 16 0.34
ACGTcount: A:0.29, C:0.29, G:0.32, T:0.09
Consensus pattern (35 bp):
GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
Left flanking sequence: Indices 166945 -- 167444
TCAATTCCTTTGGGGGGCCGAATAGCTCCGATCTCTACCGTAGGTGCCAAAGAAGAATGAAAGGA
AGCCCGAAAGAAAGCTAAAAGAAACATGACCTCGGAGACGGTGAACGAAGGAGAACCTACACGAG
GTCCTGATTGTACCACTTTGGTATGATGCCCTTCGTAAGTGGATTCACGTAAAACATCGCGCCAC
CATACAAACATGGTATATAAGATTAATCCCAAGCCTGAACCAGGAAGTGTTGCACCTCCTGTAAA
TGAATGCATGTACATAACACCACCAAGGGTGCTGGCCAAAGCTCCCAGTGACCCCAAAAGAGGCC
ATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCGATGAATCTTTTC
GTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAG
AATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAG
Right flanking sequence: Indices 167530 -- 168029
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGG
AGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCC
GACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGA
CAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGA
Found at i:167672 original size:160 final size:158
Alignment explanation
Indices: 167487--167783 Score: 522
Period size: 160 Copynumber: 1.9 Consensus size: 158
167477 AGTGAGGACC
167487 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
* * * *
167552 TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTG
66 TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGA-AGGGAGGAGTGGGAGGAGTG
167617 GGAGGAGTTGGCCCTCCGATAGGAGGGCA
130 GGAGGAGTTGGCCCTCCGATAGGAGGGCA
167646 ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
1 ACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
* *
167711 CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTT
65 CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTG
167776 GGAGGAGT
130 GGAGGAGT
167784 GGGAGGAGTT
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
159 35 0.27
160 96 0.73
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.14
Consensus pattern (158 bp):
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTGG
GAGGAGTTGGCCCTCCGATAGGAGGGCA
Left flanking sequence: Indices 166987 -- 167486
GGTGCCAAAGAAGAATGAAAGGAAGCCCGAAAGAAAGCTAAAAGAAACATGACCTCGGAGACGGT
GAACGAAGGAGAACCTACACGAGGTCCTGATTGTACCACTTTGGTATGATGCCCTTCGTAAGTGG
ATTCACGTAAAACATCGCGCCACCATACAAACATGGTATATAAGATTAATCCCAAGCCTGAACCA
GGAAGTGTTGCACCTCCTGTAAATGAATGCATGTACATAACACCACCAAGGGTGCTGGCCAAAGC
TCCCAGTGACCCCAAAAGAGGCCATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGA
CACTCATTCCGATGAATCTTTTCGTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGG
GTTTCTCCCTTAATACTCATGAGAATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGA
TAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACC
Right flanking sequence: Indices 167784 -- 168283
GGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGT
TGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCC
TCCTATCGGAGGGCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTG
CCCCCTCATTTCTACGAAGAGCTTCTTCGATAATAGTTTTTACCT
Found at i:167772 original size:9 final size:9
Alignment explanation
Indices: 167758--167795 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
167748 CCGACCGAAG
167758 GGAGGAGTT
1 GGAGGAGTT
167767 GGAGGAGTT
1 GGAGGAGTT
*
167776 GGAGGAGTG
1 GGAGGAGTT
167785 GGAGGAGTT
1 GGAGGAGTT
167794 GG
1 GG
167796 TCCGAAGGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.61, T:0.18
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 167258 -- 167757
CCAAAAGAGGCCATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCG
ATGAATCTTTTCGTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTT
AATACTCATGAGAATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 167796 -- 168295
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGA
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGA
CAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGG
GCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTC
TACGAAGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGT
Found at i:167831 original size:36 final size:39
Alignment explanation
Indices: 167784--167865 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 39
167774 TTGGAGGAGT
167784 GGGAGGAGTTGG-TCCGA-AGGA-CAACTCCGACCGATA
1 GGGAGGAGTTGGCTCCGATAGGAGCAACTCCGACCGATA
167820 GGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATA
1 GGGAGGAGTTGG--CTCCGATAGGA--GCAACTCCGACCGATA
167863 GGG
1 GGG
167866 TCCGAACGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
36 12 0.31
39 5 0.13
40 4 0.10
43 18 0.46
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.13
Consensus pattern (39 bp):
GGGAGGAGTTGGCTCCGATAGGAGCAACTCCGACCGATA
Left flanking sequence: Indices 167284 -- 167783
ACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCGATGAATCTTTTCGTTCCGCAGAGGGG
GCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAGAATTCCCTCGGGGC
TGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGT
CGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
GGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 167866 -- 168365
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
GAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCT
AGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGA
AGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAAC
CCTTTTGATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTC
Found at i:167905 original size:34 final size:34
Alignment explanation
Indices: 167843--168001 Score: 282
Period size: 34 Copynumber: 4.6 Consensus size: 34
167833 CCTCCGATAG
*
167843 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGA-AGGGTCCGAACGAAGT
167878 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
*
167912 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
*
167946 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
167980 GAGGACAACTCCGACCGAAGGG
1 GAGGACAACTCCGACCGAAGGG
168002 AGGAGTTGGA
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
34 104 0.86
35 17 0.14
ACGTcount: A:0.30, C:0.28, G:0.33, T:0.09
Consensus pattern (34 bp):
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 167343 -- 167842
GAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAGAATTCCCT
CGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAG
GAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAA
CGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAAC
GAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTC
CGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAG
Right flanking sequence: Indices 168002 -- 168501
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCTAGTAGA
AGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGAAGAGCT
TCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAACCCTTTT
GATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTCCAATGGTTTCCCTGATTGCTGGAAGT
TCTTCAGAAGTATGAAAGGCTGGAGGACTTTGTACCATCCATTCAAGCGTGGTGTAATTATGTTC
AACAGCCCAAGGACTTGGAGCACACTTGATTCCACTGGTTGAAGT
Found at i:168014 original size:9 final size:9
Alignment explanation
Indices: 168000--168046 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
167990 CCGACCGAAG
168000 GGAGGAGTT
1 GGAGGAGTT
168009 GGAGGAGTT
1 GGAGGAGTT
*
168018 GGAGGAGTG
1 GGAGGAGTT
168027 GGAGGAGTT
1 GGAGGAGTT
168036 GGAGGAGTT
1 GGAGGAGTT
168045 GG
1 GG
168047 TCCTACGGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.21, C:0.00, G:0.60, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 167500 -- 167999
GGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCC
CTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGG
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAG
GAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCC
GACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 168047 -- 168546
TCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCC
TATCGGAGGGCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCC
CCTCATTTCTACGAAGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGA
GAAATCTGAAGAACCCTTTTGATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTCCAATGG
TTTCCCTGATTGCTGGAAGTTCTTCAGAAGTATGAAAGGCTGGAGGACTTTGTACCATCCATTCA
AGCGTGGTGTAATTATGTTCAACAGCCCAAGGACTTGGAGCACACTTGATTCCACTGGTTGAAGT
CACAAAGACTACTACGAAGGAACAAACAATCCCCACTACGGAAAC
Found at i:168110 original size:35 final size:35
Alignment explanation
Indices: 168053--168143 Score: 146
Period size: 35 Copynumber: 2.6 Consensus size: 35
168043 TTGGTCCTAC
* * **
168053 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
168088 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
168123 GGACCACTCCGACCTACCGGG
1 GGACCACTCCGACCTACCGGG
168144 AGGAGTGGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 167553 -- 168052
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGG
GAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACT
CCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGT
TGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTAC
Right flanking sequence: Indices 168144 -- 168643
AGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCTAGTAGAAGGGTTTTGACG
GGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGAAGAGCTTCTTCGATAATA
GTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAACCCTTTTGATTTGTGGCAG
CCGGGTCGACGACTGCCGTTTCTTCTCCAATGGTTTCCCTGATTGCTGGAAGTTCTTCAGAAGTA
TGAAAGGCTGGAGGACTTTGTACCATCCATTCAAGCGTGGTGTAATTATGTTCAACAGCCCAAGG
ACTTGGAGCACACTTGATTCCACTGGTTGAAGTCACAAAGACTACTACGAAGGAACAAACAATCC
CCACTACGGAAACGTAAGAGCCGAAACTACTCGAGGCATTCCATCCAGCGTAAGCATCTGGATAA
TCAGGAATGCGACGTGGCATACCCGAAGGACCTGGGAAATGCATA
Found at i:170421 original size:34 final size:34
Alignment explanation
Indices: 170383--170447 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
170373 CCTCCCGGTA
170383 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
170417 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
170448 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 169883 -- 170382
ATATCCTTGTGGTTCGTGGAAAACAGCCATCTTTGTGCCAAATTGTTCATTTCAACGGAATCAGT
TTTTTCCTGGGGAATAATGCGATAGCCTCCTTCTATTTACCGGGGGGCAACACCCCTGTCTGTAC
TGCGCCCTCTCTTCTAAAGCGGGAGCACCCGTAGAATACTTGACTTTAAACCCCCCACCCGCTTT
AGAGATGGTGGTGGGGGCAGGGTGGCCTAAGCCACCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTAGGAATTATTTGTTGGCCAACTCCCCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGCGGTCGGAGTTGCCCTTTCGGGCAGGGGGCCTTTCTAAGGCCCTCTCCCT
TCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGCCGAAAGGGAACAGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 170448 -- 170947
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCC
TCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCCTTGCTTAACCTGACTCGGGGGTGCAGGGGCC
CCTTCTAAAGGGAGGCGCGCCACCTCTCGACGTTGGCTGAGAGAAGGCCTCCGCTACGCCGGCGT
AGCGCCCGCAGAAAACTAGCGCAAGGCCTTCACGCTAGCACGCGTAGCGTTTTGCCGCAATCGAA
CGCTAGGTAGAGGGGTGGCCTACTGCCGGCCCCATAGGTGAGGCC
Found at i:170701 original size:39 final size:39
Alignment explanation
Indices: 170613--170740 Score: 184
Period size: 39 Copynumber: 3.1 Consensus size: 39
170603 AAAGGTTCTT
*
170613 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG---TCCT-TC---G
170659 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
170698 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
170737 GACC
1 GACC
170741 CTTGCTTAAC
Statistics
Matches: 81, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
39 44 0.54
42 2 0.02
43 4 0.05
46 31 0.38
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (39 bp):
GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
Left flanking sequence: Indices 170113 -- 170612
CCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCCTAGGAATTATTTGTTGGCCAACTCCCCCA
ACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGCGGTCGGAGTTGCCCTTTCG
GGCAGGGGGCCTTTCTAAGGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGCC
GAAAGGGAACAGGTTTTCGCGCGTAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 170741 -- 171240
CTTGCTTAACCTGACTCGGGGGTGCAGGGGCCCCTTCTAAAGGGAGGCGCGCCACCTCTCGACGT
TGGCTGAGAGAAGGCCTCCGCTACGCCGGCGTAGCGCCCGCAGAAAACTAGCGCAAGGCCTTCAC
GCTAGCACGCGTAGCGTTTTGCCGCAATCGAACGCTAGGTAGAGGGGTGGCCTACTGCCGGCCCC
ATAGGTGAGGCCCTGCGAAGCGTAGCGTAGCGGGCGCTACGCTAGCTTCGCGGGTGGTACCGGAG
GTGGCAGGGACAACAATAGTGCGGCCACCGTATAGGCGCTAGCTCCGCTATAGCGGGCACTGTGA
GTGCCCACGATAGCGAAGGCGCTTTGCTTCGCGCGTTTCACTATAGTGCCCCCGGCTGCCGCCTT
CTAGAGGGTAGGCTGCCGGCCTAGCCACGCCCGCTTCGCCCTTCCTGGGGAAAAAAGATGTGCCA
CTATAGTGCCCTCGAGAAGGGGGAAGCCCGCATAAATGCCCTCTC
Found at i:172692 original size:46 final size:46
Alignment explanation
Indices: 172639--172914 Score: 552
Period size: 46 Copynumber: 6.0 Consensus size: 46
172629 GAACAGTGCA
172639 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172685 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172731 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172777 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172823 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172869 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
172915 TGGTTAAGGC
Statistics
Matches: 230, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 230 1.00
ACGTcount: A:0.24, C:0.26, G:0.37, T:0.13
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 172139 -- 172638
TCCCGTAGCAGCCCGTTGTTCCAGCGAGCCCCGGCCTTCATGAATATGCCATTCTATCTACAAGA
TTTTCTGTCAATTTCTGCCTGTTCGAGTAAATTGTCACAACAATTTTCCTGCTTTCCATCAAATG
CCCGTAGAGCTGCTCCTGCCGGCCAGTAGGCTAGGCTGCGGAGACTTGCATGAAGTGCTGCTGCC
CGGGAAAGAATGAGAGGAATAAGGTGAAAGAGGTAGCACTGAACGCCCCCCACTGAAGCCTCCCA
CCCGCTTCTCCCTCTTTTACGCTCGCTTTCGAGCACGCACGAACTAACTTAGCTCCCCTGCCGAG
AATGAGAGGACTTTGAAGCACTTCATGTGAAGGAGACAAAAAGCATCGAACGATATAACCTCTTG
CCCATCTGAAGGAGAGGGGAATAGGCCACCCAGTAAGGCAAGGGCATACAAACCTTACCACTGCC
ATTTCTGAAGACTTCATTATGGAATTGCGTATATAGAACAGTGCA
Right flanking sequence: Indices 172915 -- 173414
TGGTTAAGGCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGT
GGGGGCATCTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTT
CTGCTTGCTCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGC
TACTGGTTAGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCC
GGGCGCGTTTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCGAATTGAAAATTCAA
GGTTATATTTTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGACCCA
AAAACGGAGGAAGTTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGC
ACCCAAAAACGGAGGAAGTTCAATGGTTTTCCGGGTTTTTTCGAC
Found at i:173480 original size:70 final size:70
Alignment explanation
Indices: 173249--173452 Score: 401
Period size: 70 Copynumber: 2.9 Consensus size: 70
173239 AGGTTATATT
173249 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAG-ACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
173313 GGAAG
66 GGAAG
173318 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
173383 GGAAG
66 GGAAG
173388 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
173453 CTTTTTCTTG
Statistics
Matches: 134, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
69 51 0.38
70 83 0.62
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (70 bp):
TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
GGAAG
Left flanking sequence: Indices 172749 -- 173248
ACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGA
GGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCG
ACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGTTAAGGCCCTTCCCTTCCCGGTTTCC
TTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCATCTATCTACGTGTTTTTGCACC
TCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGCTCCGAGTGGTCGAGGGTGTCG
AAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTTAGCTGCCACTGCCGGTAGCCA
GCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGTTTCCTCCTTTTCCAGGTATAG
GGGTGGTCTGTTCGAAAATCCGAATTGAAAATTCAAGGTTATATT
Right flanking sequence: Indices 173453 -- 173952
CTTTTTCTTGAGTTTCCCGGGATTTTTTGACACTTTAGGCGGAAGATACTTTAATTTTCAATGAA
ATTAAATTAAAGTATTCACTTCTTGAATTAATTTTCAATTAAACCTGCTTTTTTGACCCCTTAAA
AGCGTCTAAATTCAATGAATTTTCAATGAATTGAAAATTAGTTGAATTCAGGACGTCTTGGATGT
AATCCTAACTAGGAAACTCGTGAAGGAATTAAAAGGGCGCACCCATTTCTACAGTGCACGACAAT
TTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCTCAACAGCGGTTCTAATTGCCATCAGCAGTG
CTTATCAGTCGACGTTGAATCAGTTCCCAAGCACCGGAAGAGAAAGCCTCCCCTTCCCTTTCCTT
TACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGAGTTATCGTCCCATCCTCTCGTCTAATTGTC
CAATCTCTCGTCTTACCGTCTGATTACCGTCCGATTGTCTGCTGG
Found at i:174087 original size:23 final size:23
Alignment explanation
Indices: 174053--174111 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
174043 GGGAAGGAAA
*
174053 GTTTCC-CTTCCCTGCCGCTAGAG
1 GTTTCCTC-TCCCTGCCGCTAAAG
174076 GTTTCCTCTCCCTGCCGCTAAAG
1 GTTTCCTCTCCCTGCCGCTAAAG
*
174099 GTTCCCTCTCCCT
1 GTTTCCTCTCCCT
174112 CAACTAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.08, C:0.42, G:0.17, T:0.32
Consensus pattern (23 bp):
GTTTCCTCTCCCTGCCGCTAAAG
Left flanking sequence: Indices 173553 -- 174052
CAATTAAACCTGCTTTTTTGACCCCTTAAAAGCGTCTAAATTCAATGAATTTTCAATGAATTGAA
AATTAGTTGAATTCAGGACGTCTTGGATGTAATCCTAACTAGGAAACTCGTGAAGGAATTAAAAG
GGCGCACCCATTTCTACAGTGCACGACAATTTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCT
CAACAGCGGTTCTAATTGCCATCAGCAGTGCTTATCAGTCGACGTTGAATCAGTTCCCAAGCACC
GGAAGAGAAAGCCTCCCCTTCCCTTTCCTTTACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGA
GTTATCGTCCCATCCTCTCGTCTAATTGTCCAATCTCTCGTCTTACCGTCTGATTACCGTCCGAT
TGTCTGCTGGAGGGGAGTTTGCTCTACCCAGCGGGAAGAGAGAGAAGGGAAGGAGAGGTTTCCTT
TCCCTTAGCTAGGGAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAA
Right flanking sequence: Indices 174112 -- 174611
CAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGATAGGGTTTCCTCTACCCTAGGGAAGA
GAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCATC
GCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGCA
CGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTCC
AACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCCC
TTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTTC
CCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCTC
TACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGCTGAT
Found at i:174158 original size:26 final size:26
Alignment explanation
Indices: 174120--174195 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
174110 CTCAACTAGA
*
174120 GAAGAGAGAGTTTCCTTTACCCCAGG
1 GAAGAGAGGGTTTCCTTTACCCCAGG
* * *
174146 GAAGATAGGGTTTCCTCTACCCTAGG
1 GAAGAGAGGGTTTCCTTTACCCCAGG
*
174172 GAAGAGAGGGAATTTCCTTCACCC
1 GAAGAGAGGG--TTTCCTTTACCC
174196 TAGCTAAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 31 0.76
28 10 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
GAAGAGAGGGTTTCCTTTACCCCAGG
Left flanking sequence: Indices 173620 -- 174119
TTAGTTGAATTCAGGACGTCTTGGATGTAATCCTAACTAGGAAACTCGTGAAGGAATTAAAAGGG
CGCACCCATTTCTACAGTGCACGACAATTTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCTCA
ACAGCGGTTCTAATTGCCATCAGCAGTGCTTATCAGTCGACGTTGAATCAGTTCCCAAGCACCGG
AAGAGAAAGCCTCCCCTTCCCTTTCCTTTACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGAGT
TATCGTCCCATCCTCTCGTCTAATTGTCCAATCTCTCGTCTTACCGTCTGATTACCGTCCGATTG
TCTGCTGGAGGGGAGTTTGCTCTACCCAGCGGGAAGAGAGAGAAGGGAAGGAGAGGTTTCCTTTC
CCTTAGCTAGGGAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAAGTTTCCCTTCCCTGCCGCTAGA
GGTTTCCTCTCCCTGCCGCTAAAGGTTCCCTCTCCCTCAACTAGA
Right flanking sequence: Indices 174196 -- 174695
TAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTAC
AGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAA
CCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACA
GTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGA
AGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCC
AGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGG
AAGGAAGTACCGGGGAATGGGCTGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGT
Found at i:174555 original size:24 final size:26
Alignment explanation
Indices: 174521--174585 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
174511 AGAGAGTTCC
174521 AGGGAAGAGAGGGTTTCCTCTACCCT
1 AGGGAAGAGAGGGTTTCCTCTACCCT
174547 AGGGAAGAGAGGGTTTCCTCTACCCT
1 AGGGAAGAGAGGGTTTCCTCTACCCT
174573 AGGGAAGAGAGGG
1 AGGGAAGAGAGGG
174586 AAGGAAGTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.37, T:0.18
Consensus pattern (26 bp):
AGGGAAGAGAGGGTTTCCTCTACCCT
Left flanking sequence: Indices 174021 -- 174520
GAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAAGTTTCCCTTCCCTGCCGCTAGAGGTTTCCTCTC
CCTGCCGCTAAAGGTTCCCTCTCCCTCAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGA
TAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTC
CTTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGC
AAGCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGG
CCGAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCC
AAGTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCC
CTTAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCC
Right flanking sequence: Indices 174586 -- 175085
AAGGAAGTACCGGGGAATGGGCTGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCCCCCACTCCCCTCCTCCCTTCGGT
CGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTC
GGAGTTGTCCTCCGGACCCTTCATATAGAATTGGCACTACCGGGGGAAAGGAGGCGAGGCCAAGT
GAGGGCGCACCCCACCTCTTCTTCATGGGAGGCGAGGCAAAGGGA
Found at i:174691 original size:34 final size:34
Alignment explanation
Indices: 174653--174867 Score: 180
Period size: 34 Copynumber: 6.5 Consensus size: 34
174643 CCTCCCGGTA
174653 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
174687 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
* **
174722 GGTCGGAGTTGTCCTC-CTGTCG-GAGGACCAAC-TC
1 GGTCGGAGTGGTCCTCACT-TCGTTCGGACC--CTTC
** ** * ** * ** *
174756 -CCCCCACTCCTCC-CAC-TC-CTC---CCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
174783 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
174817 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
174852 GGTCGGAGTTGTCCTC
1 GGTCGGAGTGGTCCTC
174868 CTGTCGGAGG
Statistics
Matches: 140, Mismatches: 26, Indels: 29
0.72 0.13 0.15
Matches are distributed among these distances:
27 1 0.01
28 8 0.06
29 3 0.02
30 2 0.01
31 4 0.03
32 1 0.01
33 7 0.05
34 76 0.54
35 37 0.26
36 1 0.01
ACGTcount: A:0.11, C:0.35, G:0.27, T:0.27
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 174153 -- 174652
GGGTTTCCTCTACCCTAGGGAAGAGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCT
TCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAA
GCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCC
GAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAA
GTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCT
TAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTA
CCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGC
TGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 174868 -- 175367
CTGTCGGAGGACCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTC
ATATAGAATTGGCACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCT
TCATGGGAGGCGAGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAA
GGCCCCCTGCCCCCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTC
TTGTTTTCCCAAGAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCT
TACAGGCTCGCTTCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTC
TTTTCGATGACACCTAGCAATGGGTTTTCTCCACTGGCAGCACTT
Found at i:174844 original size:130 final size:130
Alignment explanation
Indices: 174611--174943 Score: 613
Period size: 130 Copynumber: 2.6 Consensus size: 130
174601 AATGGGCTGA
174611 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
174676 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
66 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
174741 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
174806 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
66 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
* *
174871 TCGGAGGACCAACTCCCCCCA---CTCCC-CTCCTCCC-TTCGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
174931 TCGGACCCTTCGG
66 TCGGACCCTTCGG
174944 CCTTTAGGCA
Statistics
Matches: 201, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
125 37 0.18
126 8 0.04
127 5 0.02
130 151 0.75
ACGTcount: A:0.11, C:0.39, G:0.25, T:0.25
Consensus pattern (130 bp):
TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
Left flanking sequence: Indices 174111 -- 174610
TCAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGATAGGGTTTCCTCTACCCTAGGGAAG
AGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCAT
CGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGC
ACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTC
CAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCC
CTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTT
CCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCT
CTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGCTGA
Right flanking sequence: Indices 174944 -- 175443
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTG
GCACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGC
GAGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCC
CCCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCA
AGAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGC
TTCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGAC
ACCTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTTTCTCCACAGCATTCAAATG
GAAACTCTCCACAGCATTCGAATGGAAACTCTCCAAAGAGGAACC
Found at i:174880 original size:34 final size:34
Alignment explanation
Indices: 174783--174880 Score: 119
Period size: 34 Copynumber: 2.9 Consensus size: 34
174773 CCTCCCGGTA
**
174783 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
**
174817 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCT-TC
*
174852 GGTCGGAGTTGTCCTC-CTGTCG-GAGGACC
1 GGTCGGAGTGGTCCTCACT-TCGTGAGGACC
174881 AACTCCCCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
34 39 0.66
35 20 0.34
ACGTcount: A:0.10, C:0.31, G:0.32, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
Left flanking sequence: Indices 174283 -- 174782
GCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCC
GAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAA
GTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCT
TAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTA
CCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGC
TGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTC
CTGTCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 174881 -- 175380
AACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTGGC
ACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGCGA
GGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCCCC
CTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCAAG
AAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGCTT
CGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGACAC
CTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTTT
Found at i:175399 original size:24 final size:24
Alignment explanation
Indices: 175380--175433 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
175370 CAATGGATTT
175380 TCTCCACAGCATTCAAATGGAAAC
1 TCTCCACAGCATTCAAATGGAAAC
*
175404 TCTCCACAGCATTCGAATGGAAAC
1 TCTCCACAGCATTCAAATGGAAAC
175428 TCTCCA
1 TCTCCA
175434 AAGAGGAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.22
Consensus pattern (24 bp):
TCTCCACAGCATTCAAATGGAAAC
Left flanking sequence: Indices 174880 -- 175379
CAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGC
CTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTGG
CACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGCG
AGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCCC
CCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCAA
GAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGCT
TCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGACA
CCTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTT
Right flanking sequence: Indices 175434 -- 175933
AAGAGGAACCATAACGAGAAAACGGAAGTTGATGTTGGGGACGGAGATTACGAAGAAGGTGAAGT
AAAGCATTTAAGTAGCAGCAATATCAGAAATCAGAAGATCCGGGGCCCCACACCCCATATTCAGT
ATGCGGCTTTCTATTCAATTTTTCCATTGCGAGAACTTATGTGCTGGGCTAGTTTAGGGCTCGCT
TAGGGAACACTGGGAAGCGCACTTTCCAAGTCCCGGGAAGGGGTTGGGCGCACACCGCACAGGAT
ACGGTAGGAACTTATCCGGAGTGAAGGGCCTGCTAGTGCAGCACACTCAGGTGGGATGCTTTCTC
CTCCGTCTAGCGCCCACTTAGGGAATGGGATGTGCGGGCACGTGTCAGCGCGCGTATAGCGCTGG
GGCAGGCGCCTAAGCCTAGCTACGCGCGCTGAGCCTAGGCCGCCTAAGCCGAGCCTATACGGGTT
CATTAATTTAAAATTAGGGTTCATTAATTGAAAGCTATTAGGGTT
Found at i:175910 original size:21 final size:21
Alignment explanation
Indices: 175884--175950 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 21
175874 GAGCCTATAC
175884 GGGTTCATTAATTTAAAATTA
1 GGGTTCATTAATTTAAAATTA
*
175905 GGGTTCATTAATTGAAAGCTATTA
1 GGGTTCATTAATTTAAA---ATTA
175929 GGGTTCATTAATTTAAAATTA
1 GGGTTCATTAATTTAAAATTA
175950 G
1 G
175951 TCGAATAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 21 0.51
24 20 0.49
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (21 bp):
GGGTTCATTAATTTAAAATTA
Left flanking sequence: Indices 175384 -- 175883
CACAGCATTCAAATGGAAACTCTCCACAGCATTCGAATGGAAACTCTCCAAAGAGGAACCATAAC
GAGAAAACGGAAGTTGATGTTGGGGACGGAGATTACGAAGAAGGTGAAGTAAAGCATTTAAGTAG
CAGCAATATCAGAAATCAGAAGATCCGGGGCCCCACACCCCATATTCAGTATGCGGCTTTCTATT
CAATTTTTCCATTGCGAGAACTTATGTGCTGGGCTAGTTTAGGGCTCGCTTAGGGAACACTGGGA
AGCGCACTTTCCAAGTCCCGGGAAGGGGTTGGGCGCACACCGCACAGGATACGGTAGGAACTTAT
CCGGAGTGAAGGGCCTGCTAGTGCAGCACACTCAGGTGGGATGCTTTCTCCTCCGTCTAGCGCCC
ACTTAGGGAATGGGATGTGCGGGCACGTGTCAGCGCGCGTATAGCGCTGGGGCAGGCGCCTAAGC
CTAGCTACGCGCGCTGAGCCTAGGCCGCCTAAGCCGAGCCTATAC
Right flanking sequence: Indices 175951 -- 176450
TCGAATAATGAGGTGCGAGGGTCCCCCTCCCCCGGCACCCCACCCTTTTGAAGAAGAGTGCCCGC
CTGCGTGTGAGTGGGTGGGCAAGAAGAGAGAACTGCCCGCGCCAATAGTTGTGGTTTAGTGGCGC
TATTTAAGTGCGCCAGCGGAAGCGTAAAGAACCTTTCATTGAATTTCATTGAAAATGAAATTTCT
TACTGCTGGGGCGAACTCTGCTGGGACTGAAACTGAAACTACAGCTGCTTCTGCTGCTGGGGCTA
CTGAAACTGCTGCATCGGAGAAACTGGCTACTCGCTACGTGGGAAAAGGCATCGACCTCATTTTC
CCGGCACCCCATGAATGGATTCTCAAACATTTTCCATAACCCCATTTCCAACTCCTCTTTAAAGG
CGGAATCATTTGTTGTCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACC
CTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCCG
Found at i:177350 original size:69 final size:69
Alignment explanation
Indices: 177205--177342 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
177195 ACCCTAAGAT
* *
177205 GGTCCTTTCTTCCTATTAGAAAGCTCCTTACACCTTTTGGCTAACTGTTTCAAGGCTGCTTGTTG
1 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
177270 ATCC
66 ATCC
177274 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
1 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
177339 ATCC
66 ATCC
177343 TTGCCTTTAC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (69 bp):
GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
ATCC
Left flanking sequence: Indices 176705 -- 177204
GAAGCACTTTAAAGTTCTATATACGAAATTATTTCGATTAATGAACAGGGATTCTTCGAATCCCT
TTTAAAACTAAAGTAACTTAGGCTTTCGTTAATTTACGATACTTTTAAAAGGTTAAAATTAAAGA
TCGTAAATTAACGAAAGCCTAAGTTACTTTAGTTTAATTTCATTGAAAATTAAGTTACTTAGGCC
AGGGCTACACGTTTGAAGCCCTTCGGAGGCTGAAGGCGAATACTACCCGAGTCTCTGCTTTCCCC
TCCCGCCTCTGCCCCGCGCTAACCTCTTGCCCATCTGAAGGAGAGGGAAATAGGCCACCCAGTGA
GGCAAGGGCATACAAGTCTTACCACTGCCATTTTTGAAGGCCTTTCCCTGCACTGTTCCTATATA
CATACGCAATTCGGGCGAGCGTAGCGAGCCACTTACCCCCGATAGGGGGTAAGGGTCCTGTGAGA
TGGTTCTGTAAGATGCCGTATGCGGCTAGAGGTCTACCCTAAGAT
Right flanking sequence: Indices 177343 -- 177842
TTGCCTTTACTTTTAGCTGGAGCTAGTAGTTTTGAAACACTCTCGAGTGAGTACCTTAATAAGGA
TCGAAAAAAACTTAATTGAAGAGGCGGTGAAATTCTCATTCAATAGCAGGCAGTCAGACGATCAT
TCGTTTGAATTCAATAGCAAAGGTCACTCAGTCAATTCTCGGTTAGAGAGGGCAGGGCGCCTAAG
GGAAATATAGGCGACTTAGACGCCCTAGTAGGCGTTTTTTAGGCCCCAAAGAGCGTTGAAGGCAG
GCGAAACCCCTAGGGAATTTAATTGAATTTAAACCACCCTCCCTCCTCAAGGCATTCGGGAAAGA
TGCGTTAAGGGCTTGCGTCTTAGTCTGGCCACCCCGCCGAAGCAGACGCAAAGCGGCTTAACCTA
TAGAGACACTCCTAGGGACCTGTAGGAGGTCTAGAGCGCTAGCAAGCAGTGTCGAGGCTCGGGAA
TGCTAGCCACTTAGCTAGCATCGCCTGATTGAGAGTATTTCATTG
Found at i:184994 original size:37 final size:35
Alignment explanation
Indices: 184944--185047 Score: 147
Period size: 37 Copynumber: 2.9 Consensus size: 35
184934 AAGCACCTAA
184944 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTGGG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAGT--G
184981 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
* ** *
185016 G-TACTTTAATTTCATTGAATTTAAAATTAAAG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAG
185048 CAACTTTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
34 27 0.43
35 2 0.03
37 34 0.54
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (35 bp):
GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
Left flanking sequence: Indices 184444 -- 184943
CCCCAGTGATGGGTAGGAGACCCCAGTGTAGGTCCCCAGGGTGGGTAGGACACACCTACTAGTAG
GTAACCCAATGCGGTGTCAGTGTGGCCCCTAGTAGGTAGGGGGTAGACCCCCACCCAACCATCTA
CGGGGCAGCCCCATCTCAAAAAACTCTTTCTCTTGGAAAGCGATCTATCTGCGGGCTGTAGTCGG
ATTATTTATTTACCAGTGCTTCCAGAGGTAAATTGGCTATAGAGAGGGATTCTTTTCTAGTAGAG
CTTCCAATTATGACTAGTGGACTGGGACGGACTCTCGACAATTCGCTTCCATAATTGCCTAGACA
ACGAGGAGACGCCCGGCCCCTAGCGGCCTGTGGAAGGAGTGGGTGGTACTTTCTCGGCAACCAGC
CAAGCCTTTCTTCCTTCCTGAAGCGCAGACTGAGGCTAGCAAGGTTTGCTTTAATTTTAAATTCA
ATGAAATTTCAGTAATTTAATTGAATTTAAAATTAAAGCACCTAA
Right flanking sequence: Indices 185048 -- 185547
CAACTTTAAAGTAAAGTGAAGCGCTTCCAATTCGTAGCGCATGGGCGGGTCTAACTCACCTCTAG
AAAAGGATGGTACACCCTAACAGGCCTTGGCACCGGGACCAGTCTTAAGTGGGTGGGGAGTTATC
GACCCCTCACCAATTCCATTCCATAGTACAGTAGTCGATCCGGGGCGCGAGCGCCCCACCATCAA
AACCTTGAAAGCGCGTAGCGCAAAGAACACTCGTGGCGAAGCGCGTAGCGCAAGGATTGCTTTTT
CTTCCCCAGCCCTTGAACGATTTCGATCGGAGGGACGGGTCTCCGATGAATATCGGGCACCAGGA
TGAATTAACGTCCTAATCGGGCGTTTCCACATATTTCTCCACAGGGCACTAACCTTCACGATCTT
TCGGAAGGAACCCATTCCGATGGACTAATCGCAGACGGGGAACCGAGCAGATAGAGGCCCGTAAG
TCTCTGATCCGATGTGCACTGCTCAGGTGGATAGGTAAGAACGCT
Found at i:186836 original size:79 final size:79
Alignment explanation
Indices: 186705--186851 Score: 294
Period size: 79 Copynumber: 1.9 Consensus size: 79
186695 GGGTGTAGGC
186705 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
186770 AGTGGTCCTTCGGA
66 AGTGGTCCTTCGGA
186784 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
186849 AGT
66 AGT
186852 TGCCCTCCTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.13, C:0.37, G:0.22, T:0.28
Consensus pattern (79 bp):
CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
AGTGGTCCTTCGGA
Left flanking sequence: Indices 186205 -- 186704
TAGCTAATTCTCCCTTTTTTGAGTGAAAACTGGACTTTTTAAAGGCCTTTGAAACTATCATTATT
TCACATAATTCAGGAACTTCCGAAATGTGGGTATGATTAAGTTTTAATAACAAATCCTGGCGCAG
TACATTCTCGTAGTGAAAACGGAGTATACTTGGAGTAAACATAAGTAGGCTTTTTTCTGGCTGTT
TGTGAATCGGTCGTCGGATGGAATCCACATTTTGTTTCTAGCTGAATCCATACATCCTCGTTCTG
CCCTTTCAACAGGAAGGGGCTGAAGCCGGTTATCATTGATCAATAATCCCGCCCCGCATAGTCCC
ACCCACTTCATGGATGGTGGTGGGGACGGGAGTGTTGGCCTGCCGGCCGAGGCTGGCCCGGAAGG
GCCCGGGGGGGGCCGGAGGCCCCCCACCCCTTTATGAAGTTCCAAAAGATCCAACCGCCAGGTAA
GGGAAAGCGCGTGGCTAGGCAGAATGGTTGTTCCGGGGTGTAGGC
Right flanking sequence: Indices 186852 -- 187351
TGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGC
CCTTAAGTGATCCTTTCTATATACGTGAACTCCCCATCTCTTCCGCCTTTTCTAGAGCACACAAA
AATCGGTGGGTAGGGAGTTGGACTTTAGCCTTAGGGGCCTAAAGCCCACTATAGTGCAACGCAAT
TCGAATGACGTTTCTGATTGAGGAAGGCATCTCCCTCCTAGGCATCCTATACATCCCATATCCCA
TCCCCTACCTCCATCCGAATGCTCGAACGAGGGTCCGATAGGACAACTCCGACCGTAAGAACCTT
TAATTTAAATTAAATTAAATTAAAGTAACCCCTTTAAATAAATAAAGGGTTGGTTTAAAATTAAT
TGAATTTAATTCATACAACTCCTCCTGGGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTC
TTACGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCC
Found at i:187958 original size:33 final size:36
Alignment explanation
Indices: 187931--188002 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 36
187921 TTAAAAGAAC
187931 CTTGAATTTTCAATGAAATTAAATT-AAAGTAACCCCTA
1 CTTGAATTTTCAATGAAATTAAATTAAAAGTAA--CC-A
187969 CTTGAATTTTCAATGAAATTAAATT-AAAGTAACC
1 CTTGAATTTTCAATGAAATTAAATTAAAAGTAACC
188003 GCGGGCACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 2 0.06
38 32 0.94
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (36 bp):
CTTGAATTTTCAATGAAATTAAATTAAAAGTAACCA
Left flanking sequence: Indices 187431 -- 187930
GGATCAATTCCTTCAATCAGCAAAACAGCCCTATAAGTCCTTCCGCAGGAGGAAGAAAATAAAGC
AGCCTTGCTACTACTTCCGCTGTCGAGTTTTAAAATGAATTGAATTTAATTTGAAAAAAATGCTC
TTTATTTACTTTAGTTTAATTTCATTGAAAATTAAAGCAACATTCACTTAATTTTCAATGAAATT
AAATTAAAGCCTTTAAAGGACATTTTAAATTAATTGAAAATTAGGCAAAGAGGAAGAAAAAATCA
GCTATTAGTGCTTCAATCCTTAACGCATTCTAACGGGGGCGGGTCTGGCACTGAATTCGATGGGT
CTTACTCTGACTCACCCTGGCCGGCAGCCCTTCAACCCCTCTTGCCCGGGAGGCCAGCCAGTCCC
TTAGTCCCCCACTGGCGTATGTTAGGATCAGCCTTCTCCGCGGCAAGGCGCTTCAGCATTTTAAG
TGAAGGAGAAGCGTTTTCTGTATTTTAAGTTGCCTTTAAAAGAAC
Right flanking sequence: Indices 188003 -- 188502
GCGGGCACCCGCGTGTTTCTCGAGTGAACGACAGACTGAACCTATCAGTGAAAAGAGATTGGGTT
TTCCTAGAGGTACCGCCTTCTCAGCTCCCTCCAGCAGAGCAGCAGCCATCCCAGCAGACTGAGGT
GCCACAGCTTCCAAAGTCTCCATCGGCAGAGCAGCAGCCCTTTAGCGGTACACCCGCGAGAAGGA
TTCCAAGGTACGGGAGCCAGTTGAGCTGCCGTCACTGCCAGTCAAGAAGAAGGAACCGCCATAGC
GGATAGGCAAGGCCCGAGTTAACTGAGAGTAGAATTTTCTTCCTATATACGGCGTGAATTGCTAG
CCTTCCAAACCTCTTTCGGGATGGAAAAGGAGCCAACCAATCAAAGATCTCTCTGACCCCTTTTA
AAAGTCCGAGAAAGAATTACTGTTGTGTGGTCAACAATAATTCTAAATATGCGATGTCTCTTTAG
AAGCCACTAATAAATCCCTACATCAGTAATTCACGAGACCTCAGC
Found at i:189133 original size:9 final size:9
Alignment explanation
Indices: 189119--189154 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
189109 TATCGGACCA
189119 ACTCCTCCC
1 ACTCCTCCC
*
189128 ACTCCTCCA
1 ACTCCTCCC
189137 ACTCCTCCC
1 ACTCCTCCC
189146 ACTCCTCCC
1 ACTCCTCCC
189155 TTCGGTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.14, C:0.64, G:0.00, T:0.22
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 188619 -- 189118
TTAAAAGTCACAGTGTGCCTTTTAAAAATTCCTTGGACCAGCTCTTTAAAGGTCCGGCAAGCGTA
GGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCTATCATGCGGTTTCTTGGGATCCTGAC
CCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGGTGGTTTGGAAGACATTAAGACCTTCT
GTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCGGTTTGCCAGGGCAACTGCCAGCCCTA
TGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCATGCTCCGTAAGGTGGCATTAACGTCC
AGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACCTAGGACGCCCTTTAAACCCCTTTAAA
GAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATCGGACCA
Right flanking sequence: Indices 189155 -- 189654
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCT
ATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGCA
CTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTGG
GTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTAA
GCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTGGGACTAGC
Found at i:189139 original size:18 final size:18
Alignment explanation
Indices: 189116--189153 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
189106 TCCTATCGGA
189116 CCAACTCCTCCCACTCCT
1 CCAACTCCTCCCACTCCT
189134 CCAACTCCTCCCACTCCT
1 CCAACTCCTCCCACTCCT
189152 CC
1 CC
189154 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.63, G:0.00, T:0.21
Consensus pattern (18 bp):
CCAACTCCTCCCACTCCT
Left flanking sequence: Indices 188616 -- 189115
CTTTTAAAAGTCACAGTGTGCCTTTTAAAAATTCCTTGGACCAGCTCTTTAAAGGTCCGGCAAGC
GTAGGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCTATCATGCGGTTTCTTGGGATCCT
GACCCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGGTGGTTTGGAAGACATTAAGACCT
TCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCGGTTTGCCAGGGCAACTGCCAGCC
CTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCATGCTCCGTAAGGTGGCATTAACG
TCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACCTAGGACGCCCTTTAAACCCCTTT
AAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTTG
TCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATCGGA
Right flanking sequence: Indices 189154 -- 189653
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGC
TATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGC
ACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTG
GGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTA
AGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTGGGACTAG
Found at i:189259 original size:64 final size:64
Alignment explanation
Indices: 189158--189321 Score: 319
Period size: 64 Copynumber: 2.6 Consensus size: 64
189148 TCCTCCCTTC
*
189158 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
189222 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
189286 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
189322 TCGGAGTGGT
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 99 1.00
ACGTcount: A:0.14, C:0.29, G:0.32, T:0.26
Consensus pattern (64 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 188658 -- 189157
AGCTCTTTAAAGGTCCGGCAAGCGTAGGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCT
ATCATGCGGTTTCTTGGGATCCTGACCCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGG
TGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCG
GTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCA
TGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACC
TAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAA
CTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATC
GGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 189322 -- 189821
TCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTT
ACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAA
ATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTC
CTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCG
CTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTG
GGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTCCCTTGTAAGCTAACTCG
TAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTTGATATGCATCGTGGCCC
AGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTA
Found at i:189334 original size:34 final size:35
Alignment explanation
Indices: 189286--189369 Score: 152
Period size: 34 Copynumber: 2.4 Consensus size: 35
189276 ATAGGGAGAG
189286 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
*
189320 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
189355 GGTCGGAGTTGTCCT
1 GGTCGGAGTTGTCCT
189370 TCTGTCGGAG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 31 0.66
35 16 0.34
ACGTcount: A:0.10, C:0.30, G:0.30, T:0.31
Consensus pattern (35 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 188786 -- 189285
GGTGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAAC
CGGTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCG
CATGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAA
CCTAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCC
AACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTA
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 189370 -- 189869
TCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGC
ACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGAC
TCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATC
CTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATC
CCCCAATCCTTGGTCTGGGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTC
CCTTGTAAGCTAACTCGTAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTT
GATATGCATCGTGGCCCAGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTACGC
TAGCCCCCCACCCTTTAGGTACAACGGTTTCACTCGGTCTTTCGA
Found at i:189383 original size:34 final size:34
Alignment explanation
Indices: 189286--189386 Score: 107
Period size: 34 Copynumber: 3.0 Consensus size: 34
189276 ATAGGGAGAG
* **
189286 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
**
189320 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCT-TC
* *
189355 GGTCGGAGTTGTCCT-TCTGTCG-GAGGACCCTT
1 GGTCGGAGTGGTCCTCACT-TCGTGAGGACCCTT
189387 ACCCCCTATC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
33 1 0.02
34 40 0.67
35 19 0.32
ACGTcount: A:0.10, C:0.30, G:0.30, T:0.31
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
Left flanking sequence: Indices 188786 -- 189285
GGTGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAAC
CGGTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCG
CATGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAA
CCTAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCC
AACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTA
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 189387 -- 189886
ACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAA
ATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTC
CTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCG
CTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTG
GGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTCCCTTGTAAGCTAACTCG
TAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTTGATATGCATCGTGGCCC
AGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTACGCTAGCCCCCCACCCTTTA
GGTACAACGGTTTCACTCGGTCTTTCGAGTGTGTAGGCAGTTCCT
Found at i:196726 original size:34 final size:34
Alignment explanation
Indices: 196665--196856 Score: 357
Period size: 34 Copynumber: 5.6 Consensus size: 34
196655 AAGGGTCCGA
*
196665 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
*
196700 AGGACAACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
196734 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
196768 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
196802 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
196836 AGGACCACTCCGACCGAAGGG
1 AGGACCACTCCGACCGAAGGG
196857 AGGAGTTGGA
Statistics
Matches: 156, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
34 139 0.89
35 17 0.11
ACGTcount: A:0.30, C:0.29, G:0.32, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 196165 -- 196664
TAGCAATTATGCTTGCTATGGGCTTACAGCACTCGACCGATTCACGGCGGGTCGAGTGCCGTCTT
CATCTCCGGGAGAGGGGATAGTATTACTTGTTTCTGATAGATCGCTGCGCTCGATAGCTCGCTAT
AGGTTCATCCCGATACCCTACTAGGTTTCACTAGCGGTGCCCTCTAGGCAAACTTTCAGAGAAAA
CAAGGTGGCACACTAATTTACAATTAAATTAAATTAAAGTAAATTTAGCCTAAAGAGATTCCTTT
TCCCGCGTCCTTGTGACCCATTGATCAATAATCGGGAAGAGAACCCAGGAAGAAAAAGCTGGAAT
AAGCAGAAATTCAATACGGAGATTAAATAAGAAGAAAAGGGTGTATAGCTCAGTCGGTAGAGCAC
CTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAGGAACGTCGAGGGGAAAAA
GGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGA
Right flanking sequence: Indices 196857 -- 197356
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTCGCCCTCCGATAGGAGGGCAACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAGGAGTTG
GTCCTCCGATAGGAGGACAACTCCGAATTCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGAC
CTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAACT
GCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCCCTCTCACTACGTTCGAGTGCCCCCTTTCAAT
AAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTAGTATATGCCCTTCCAGGAAAAGTGGTGCCTG
TAGGCAGCCTGCCGGGAAGCGCTACCTGACCCATCCAGACCCTCTCCTATGGGGAACACGGCCGT
CCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAAAAAGGGCGGCT
Found at i:196867 original size:9 final size:9
Alignment explanation
Indices: 196855--196890 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
196845 CCGACCGAAG
196855 GGAGGAGTT
1 GGAGGAGTT
196864 GGAGGAGTT
1 GGAGGAGTT
*
196873 GGAGGAGTG
1 GGAGGAGTT
196882 GGAGGAGTT
1 GGAGGAGTT
196891 CGCCCTCCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 196355 -- 196854
GAAAACAAGGTGGCACACTAATTTACAATTAAATTAAATTAAAGTAAATTTAGCCTAAAGAGATT
CCTTTTCCCGCGTCCTTGTGACCCATTGATCAATAATCGGGAAGAGAACCCAGGAAGAAAAAGCT
GGAATAAGCAGAAATTCAATACGGAGATTAAATAAGAAGAAAAGGGTGTATAGCTCAGTCGGTAG
AGCACCTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAGGAACGTCGAGGGG
AAAAAGGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGAAGGACAACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 196891 -- 197390
CGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGAATTCCGAT
AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCGGGAGGA
GTGGGGGGAGTTGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCC
CTCTCACTACGTTCGAGTGCCCCCTTTCAATAAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTA
GTATATGCCCTTCCAGGAAAAGTGGTGCCTGTAGGCAGCCTGCCGGGAAGCGCTACCTGACCCAT
CCAGACCCTCTCCTATGGGGAACACGGCCGTCCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAA
AAAGGGCGGCTTCCCACACCCTTACCCTCCCTACGGCCTTTAGGC
Found at i:197063 original size:22 final size:22
Alignment explanation
Indices: 197037--197085 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
197027 CGAACGAAGT
197037 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
197059 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
197081 GAGGA
1 GAGGA
197086 GTGGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 196537 -- 197036
GCTCAGTCGGTAGAGCACCTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAG
GAACGTCGAGGGGAAAAAGGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGAAG
GACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACG
AAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TTGGAGGAGTTGGAGGAGTGGGAGGAGTTCGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCT
CCGATAGGAGGACAACTCCGAATTCCGATAGGGTCCGAACGAAGT
Right flanking sequence: Indices 197086 -- 197585
GTGGGGGGAGTTGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCC
CTCTCACTACGTTCGAGTGCCCCCTTTCAATAAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTA
GTATATGCCCTTCCAGGAAAAGTGGTGCCTGTAGGCAGCCTGCCGGGAAGCGCTACCTGACCCAT
CCAGACCCTCTCCTATGGGGAACACGGCCGTCCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAA
AAAGGGCGGCTTCCCACACCCTTACCCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGG
GTCGGGTAAGTGGCTCGCTATCGCTCGCCCGAGAGTGACAAACTGCCATAATAAAGACCAAGAAC
AGACCAGAGAGAAAGAGTCTGTGGAAGAGCAACGGAAGCTCATAGAGAAACCCTAGGGCATTGGC
TCGTTCAAAGAACTACTGCTGCTTTTTCAGTCCCAACCATTCCTA
Found at i:200944 original size:9 final size:9
Alignment explanation
Indices: 200933--201004 Score: 126
Period size: 9 Copynumber: 8.0 Consensus size: 9
200923 CTCCGGACCA
*
200933 ACTCCTCCA
1 ACTCCTCCC
200942 ACTCCTCCC
1 ACTCCTCCC
200951 ACTCCTCCC
1 ACTCCTCCC
200960 ACTCCTCCC
1 ACTCCTCCC
*
200969 ACTCCTCCA
1 ACTCCTCCC
200978 ACTCCTCCC
1 ACTCCTCCC
200987 ACTCCTCCC
1 ACTCCTCCC
200996 ACTCCTCCC
1 ACTCCTCCC
201005 GGTAGGTCGG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.14, C:0.64, G:0.00, T:0.22
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 200433 -- 200932
GTGTGTGCCGGTCTTCCTGCTTCGTCGGAAAAAGTTACTAGCTGCAGTGCATCGTCCGATCTCGC
TGGTCCTAGATCTCCTGCTAGCTCAGCCTAGACCTGCAGTAGGGCAGGGCAGCCCGGCAGGCTGA
CCGGCTCGCAAGCTCGCCCCCCTGCCCTACTAGGGCGGGTTTCCGGTTCGAAACGGTTGTTGATT
GTGTAATCTCTTCCTCCGTCCCGTGCCAGGGGGCCGCACAAGGCATGCGTTCGTCCTTCCGATGA
AGGAAAAAAGCCTAGCAGCCTTTTAAAGGCGCCAGTAGATGGATGTATCCACCACCTGATAGACC
ATGAAAAGGTTTTAGCGCATTCATCTAGGAATGCCGCCTGACGTGTTTAGAAGTGGATTCGAACC
ACTGACCCAAGGATTTTCAGTCCTTTGCTCTAACCAACTGAGCTACCTAAACTACTAGATGAATG
AAGCCCTCCCCCTCCCGGTAGGTCGGGGGAGTGTCCTCCGGACCA
Right flanking sequence: Indices 201005 -- 201504
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTT
CGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTGGT
TTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCCAC
CTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGGTA
AAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAGGG
GCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTT
Found at i:201041 original size:35 final size:35
Alignment explanation
Indices: 201002--201198 Score: 367
Period size: 35 Copynumber: 5.6 Consensus size: 35
200992 TCCCACTCCT
201002 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
201037 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
201072 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
201107 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
201142 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
201177 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
201199 TCGGACCCTT
Statistics
Matches: 159, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 159 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 200502 -- 201001
CCTAGATCTCCTGCTAGCTCAGCCTAGACCTGCAGTAGGGCAGGGCAGCCCGGCAGGCTGACCGG
CTCGCAAGCTCGCCCCCCTGCCCTACTAGGGCGGGTTTCCGGTTCGAAACGGTTGTTGATTGTGT
AATCTCTTCCTCCGTCCCGTGCCAGGGGGCCGCACAAGGCATGCGTTCGTCCTTCCGATGAAGGA
AAAAAGCCTAGCAGCCTTTTAAAGGCGCCAGTAGATGGATGTATCCACCACCTGATAGACCATGA
AAAGGTTTTAGCGCATTCATCTAGGAATGCCGCCTGACGTGTTTAGAAGTGGATTCGAACCACTG
ACCCAAGGATTTTCAGTCCTTTGCTCTAACCAACTGAGCTACCTAAACTACTAGATGAATGAAGC
CCTCCCCCTCCCGGTAGGTCGGGGGAGTGTCCTCCGGACCAACTCCTCCAACTCCTCCCACTCCT
CCCACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 201199 -- 201698
TCGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTGG
TTTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCCA
CCTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGGT
AAAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAGG
GGCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTTCGTTAAAAAAACTAACTAG
CGGCAGCTTTAATTGAAGGCGCCGCTTTGAAAGGCTCAAAAAAACACTAGCTAGCTCGCTTTGGC
ACAAAAACACTAGCTAGCTCTCGGAAGCCAAGTTGGCGCCGCTTTGAAAGGCTCAAAAACACTAA
CTAGCTAGCTAAGTAACTTAATTTTCAATTAAATTAAATTAAAGT
Found at i:201717 original size:14 final size:14
Alignment explanation
Indices: 201698--201724 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
201688 TAAATTAAAG
201698 TAACTTATGCGCTT
1 TAACTTATGCGCTT
201712 TAACTTATGCGCT
1 TAACTTATGCGCT
201725 CAAAAAACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (14 bp):
TAACTTATGCGCTT
Left flanking sequence: Indices 201198 -- 201697
TTCGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTG
GTTTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCC
ACCTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGG
TAAAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAG
GGGCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTTCGTTAAAAAAACTAACTA
GCGGCAGCTTTAATTGAAGGCGCCGCTTTGAAAGGCTCAAAAAAACACTAGCTAGCTCGCTTTGG
CACAAAAACACTAGCTAGCTCTCGGAAGCCAAGTTGGCGCCGCTTTGAAAGGCTCAAAAACACTA
ACTAGCTAGCTAAGTAACTTAATTTTCAATTAAATTAAATTAAAG
Right flanking sequence: Indices 201725 -- 202224
CAAAAAACGAATTGAAAGGCTTACTTTTAAAATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAA
ATTGTTTTGGCTTCGTTTAAAGAAAACAGCTAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCT
TTCGTTAAAAAAACTAACTAACTAGCGTACGCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAA
TCAGTAAAGAGGAAAATTTACTTCCTTTTCCCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCC
GGGAGCATAGCCTACTTCCTCTTGGGCTGGGCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAAT
AGGACAGGGTCGAGCTTTCTGAAAAGTATCCTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCC
AGGGAAGGCCCTACCCGTAAATCTTTGGCCTTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTG
CCCCTACCCTGCCCAAGAAGCCCGGCAGGGCGCTTGCCAACTCCT
Found at i:202273 original size:9 final size:9
Alignment explanation
Indices: 202255--202308 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
202245 CTTCGGACCA
202255 ACTCCTCCC
1 ACTCCTCCC
*
202264 ACTCCCCCC
1 ACTCCTCCC
202273 ACTCCTCCC
1 ACTCCTCCC
*
202282 ACTCCCCCC
1 ACTCCTCCC
202291 ACTCCTCCC
1 ACTCCTCCC
202300 ACTCCTCCC
1 ACTCCTCCC
202309 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 201755 -- 202254
AATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAAATTGTTTTGGCTTCGTTTAAAGAAAACAGC
TAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTAACTAACTAGCGTAC
GCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAATTTACTTCCTTTTC
CCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACTTCCTCTTGGGCTGG
GCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCTTTCTGAAAAGTATC
CTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCCGTAAATCTTTGGCC
TTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAAGAAGCCCGGCAGGG
CGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 202309 -- 202808
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
Found at i:202278 original size:18 final size:18
Alignment explanation
Indices: 202255--202304 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
202245 CTTCGGACCA
202255 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
202273 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
202291 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
202305 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 201755 -- 202254
AATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAAATTGTTTTGGCTTCGTTTAAAGAAAACAGC
TAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTAACTAACTAGCGTAC
GCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAATTTACTTCCTTTTC
CCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACTTCCTCTTGGGCTGG
GCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCTTTCTGAAAAGTATC
CTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCCGTAAATCTTTGGCC
TTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAAGAAGCCCGGCAGGG
CGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 202305 -- 202804
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGA
GTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGG
TCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGG
Found at i:202345 original size:35 final size:35
Alignment explanation
Indices: 202306--203267 Score: 1706
Period size: 35 Copynumber: 27.7 Consensus size: 35
202296 TCCCACTCCT
202306 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202341 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202376 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202411 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202446 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202481 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202516 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202551 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202586 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202621 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202656 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202691 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202726 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202761 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202796 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202831 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202866 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202901 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202936 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
202971 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203006 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203041 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203076 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203111 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *** * *
203146 CCC--T---TCGGCCT-TTAGGCAC-TCG-ACCGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
*** *
203173 TAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGG-TA-GGTCGGAGTGGTCCTCACTTCGTTCGGA
203210 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *
203245 CCCTATCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
203268 CTATCGGAGG
Statistics
Matches: 889, Mismatches: 28, Indels: 20
0.95 0.03 0.02
Matches are distributed among these distances:
27 3 0.00
28 3 0.00
29 4 0.00
30 5 0.01
33 1 0.00
34 5 0.01
35 859 0.97
36 4 0.00
37 5 0.01
ACGTcount: A:0.12, C:0.29, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 201806 -- 202305
TTAAAGAAAACAGCTAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTA
ACTAACTAGCGTACGCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAA
TTTACTTCCTTTTCCCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACT
TCCTCTTGGGCTGGGCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCT
TTCTGAAAAGTATCCTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCC
GTAAATCTTTGGCCTTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAA
GAAGCCCGGCAGGGCGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCT
CCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 203268 -- 203767
CTATCGGAGGGCCCTGGGGAAGAGGATCGAGTTGGCAGGTAGCGCTACGCGCTACCGCGGGAGGT
GCTGCGCACCTCCCAGCCCTTGCAAACAGCTTGATGCACTATCTCTCTTCAACCCCCAAGCGCAC
GATGTGGCCATCCCTCACCTTCCTTTGCTTCAAACGGCGCGTTCATGTCCTTCCCCAAGCGCACG
ATGTGGCAGAAGGAACGAGTAACCTGATTCAAAGAGTGGAATGCATTAGCTGTCTGCTCTGGTTG
ACAGAAAGGGTCGGGGAGGGGCAACCACTCATTGTTAAGACCAAAGGGTTGGGCGGAAAGGAAGA
ATAGTTCCGCCGCTATTGGTTCTCCCGCAGCTCGGGAGTATCCAGCTGCAAGAATCCCAACTCGG
TGCCTTTTGAGAAGAGTTGCTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTCGGGGGG
GAGTCATCGTCCATCTAGGCCTCTACGGCAGAATCAGTCAGAGAG
Found at i:204264 original size:64 final size:64
Alignment explanation
Indices: 204163--204294 Score: 246
Period size: 64 Copynumber: 2.1 Consensus size: 64
204153 CTGAAGTGCT
*
204163 AGGGTCCGAGCGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
*
204227 AGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
204291 AGGG
1 AGGG
204295 AGGAGTTGGG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.14
Consensus pattern (64 bp):
AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
Left flanking sequence: Indices 203663 -- 204162
TTTGAGAAGAGTTGCTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTCGGGGGGGAGTC
ATCGTCCATCTAGGCCTCTACGGCAGAATCAGTCAGAGAGGCCTGAGAGACGGTATTTAAAGGCG
AAAGTCAGCGGTTCGAATCCGCGTACTGTCTCCAGCCCGTGATCCGATTCAATACAATGGTATAG
GATAGGGATGAAACAATCTCGATTTCATCTTGTATTTATGGACGTTGGTAAGATCGAGGCATTTA
AAAGATGATGGCATAGCTCTTTAATGGCGAGGTTCAAACGAAGAAGGGCTTATGGTGGCGTCGGC
ACCCAGAGACGAAGAAGGGCGTAGCAATCGACGAAATCTTCGGGGAGCTGAAAACAAGCATAGAT
CCGGTCCCGAATAGGGCCTTCGAACTGCCACTGAATTCATAGGCAGGCAAGAGACAACCTTAGAA
CTGAAACATCTTAGTAGCCAGAGAAAAAGGAAGCGCTGAAGTGCT
Right flanking sequence: Indices 204295 -- 204794
AGGAGTTGGGGGAGTTGGGCAGCTAGAGCGAAATGGGAGTAACCTAAACCGCGAAAACGGTGTTG
TGGGGGAGCGATACGAGCTTTGTGCTGCGGCGGTGAAGCGGTTGAGTCCCGCACCCCAGATGGTG
AGAGTCCATACGCCGAAAGCATCACTGGCTCACGCTCTAACCCGAGTACGCATGGGAGTGGAATC
CCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGTACTAC
CAGTACCGTGAGGGAGAGGTGGAAAGAACCCCCATCATCGGGGAGTGAAATAGCACATGGAACCT
ACAGCTCCCAAGCAGCAGTGGGAGGAGAATCGGATCTCTGACCTGCCTGTTGAAGAATGAGCCGG
CGACTCATAGGCTTTAAAGGCCTGGTTGAGGAAACCCACCACCGGAGCCATAGCGAAAGCGAGTC
TTCCCAGGGCAATTGTCACTGCTTATGGACCCAACCTGGGTGATC
Found at i:206681 original size:9 final size:9
Alignment explanation
Indices: 206669--206706 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
206659 CCGACCGAAG
206669 GGAGGAGTT
1 GGAGGAGTT
206678 GGAGGAGTT
1 GGAGGAGTT
206687 GGAGGAGTT
1 GGAGGAGTT
206696 GGAGGAGTT
1 GGAGGAGTT
206705 GG
1 GG
206707 TCCGAAGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.58, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 206169 -- 206668
CACTTGTTGGGTGCCCCTCCGGCAGAAAGGAAAGCGCGGGACTCGATGTTTGAGCTGCACTCGAA
TATTTCGGTGTCTGAATTGGCACTCGCATACAATCACTCGATTTAGGCAGCTTAGCCGCCGAATA
CCGAGAGCTTATACTTACTTGATTTGGAGGAAAAGTAAAGAGCCTATTATTTCATTATACGGAGT
ATTCCGGTGAAGCTGAACTAAATTAAATTAAGTTAAATTAATTTCAGCGCTTTAATTTTCAATGA
AATTAAAGTGAATTACTTTAATTTTCAATGAAATGAAATTAGAAAATGCACTTTTTCTGTTAGGG
CCTGGCAAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 206707 -- 207206
TCCGAAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCCGCCCCTGAATCGAGGAAGGATATTTTCACACGCCCTCG
CTTCTTCGAGGCTCTCCCACCGGTTGTGCTCGATACAACAAGCATACGCACAACACACCTTCCAA
GGCAAGGCATCCACCGGTACAGGCGCGAAGCCCCCAGAAAGAAGACACAATGCTCCTACCGTGCT
TCGGCATCCCCGGCGGCGTAGACGCGTGGTAGCAGGTAACTTCTTGATTAATTGAGCTTCACAGC
TTCATCTATATACATACGCCCCTATCCATTACTCCCCCAAAGGGG
Found at i:206751 original size:35 final size:35
Alignment explanation
Indices: 206712--206927 Score: 396
Period size: 35 Copynumber: 6.2 Consensus size: 35
206702 GTTGGTCCGA
* * **
206712 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206747 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206782 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206817 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206852 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206887 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
206922 AGGACC
1 AGGACC
206928 CGCCCCTGAA
Statistics
Matches: 177, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 177 1.00
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 206212 -- 206711
CGATGTTTGAGCTGCACTCGAATATTTCGGTGTCTGAATTGGCACTCGCATACAATCACTCGATT
TAGGCAGCTTAGCCGCCGAATACCGAGAGCTTATACTTACTTGATTTGGAGGAAAAGTAAAGAGC
CTATTATTTCATTATACGGAGTATTCCGGTGAAGCTGAACTAAATTAAATTAAGTTAAATTAATT
TCAGCGCTTTAATTTTCAATGAAATTAAAGTGAATTACTTTAATTTTCAATGAAATGAAATTAGA
AAATGCACTTTTTCTGTTAGGGCCTGGCAAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGG
GTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGA
Right flanking sequence: Indices 206928 -- 207427
CGCCCCTGAATCGAGGAAGGATATTTTCACACGCCCTCGCTTCTTCGAGGCTCTCCCACCGGTTG
TGCTCGATACAACAAGCATACGCACAACACACCTTCCAAGGCAAGGCATCCACCGGTACAGGCGC
GAAGCCCCCAGAAAGAAGACACAATGCTCCTACCGTGCTTCGGCATCCCCGGCGGCGTAGACGCG
TGGTAGCAGGTAACTTCTTGATTAATTGAGCTTCACAGCTTCATCTATATACATACGCCCCTATC
CATTACTCCCCCAAAGGGGAAACACGGATCAATCCATTGTACCCTTAATGGATTGATCAATTAGG
TCACGGATTGGTCCATTAAGGGATGCATTAATTGTTTGAGAAATGACAGATCGATGGACCACCCC
TGATAGATATAACACTGGGCTCCTTGCATTCCTTTGTTCTGCTGTCTCGGTGTCTAATAGGCGTC
CTAACTTCCCGTGTAGCCCGCCACTACGATAACACCAATAACCGC
Found at i:209659 original size:46 final size:46
Alignment explanation
Indices: 209605--209922 Score: 430
Period size: 46 Copynumber: 7.4 Consensus size: 46
209595 ACCACTCCGA
209605 CCGA-AGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
209650 CCGAGAGGGAGGAGTTGG---TCCG-TAGGA---CCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
209689 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
* *
209735 CCGAGAGGGAGGGGTTGG---TCCG-TAGGA---CAACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
209774 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
*
209820 CCGAGAGGGAGGAGTTGG---TCC--TACGGA---CAACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATA-GGAGGGCCACTCCGAATT
209859 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
*
209905 CCGATAGGGAGGAGTTGG
1 CCGAGAGGGAGGAGTTGG
209923 TCCGAAGGAC
Statistics
Matches: 242, Mismatches: 7, Indels: 47
0.82 0.02 0.16
Matches are distributed among these distances:
39 87 0.36
41 2 0.01
42 24 0.10
43 24 0.10
44 2 0.01
45 4 0.02
46 99 0.41
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (46 bp):
CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
Left flanking sequence: Indices 209105 -- 209604
CTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCGTGGGTAAAGTGGA
CGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCGCGGCCCGAATCAA
TATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGGCCCCCCCACCCGT
TAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGAAATTAACGGTCAA
ATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAGCGGAAGCGGCGCT
TCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCTCAGTTGGTTAGAG
TGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTCGACGAGTACTCGT
TTACTTTCCCACCTCAGGGTCCGAACGAAGTGAGGACCACTCCGA
Right flanking sequence: Indices 209923 -- 210422
TCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGGTCAGGGAAGCTAGATAGGCGCTTC
CCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGGTGAGTGGAGCCTATAGCCATGGAT
TCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCACGCTAGACGCACGCAAGCTAGCCT
CACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAA
GTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAG
TTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGCCCCTGCCG
Found at i:209688 original size:39 final size:41
Alignment explanation
Indices: 209592--209959 Score: 390
Period size: 39 Copynumber: 8.9 Consensus size: 41
209582 GAACGAAGTG
209592 AGGACCACTCCG-A--CCGA-AGGGAGGAGTTGGCCCTCCGAT
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
209631 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGG-TCCG-T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
209673 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
*
209716 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGGGTTGG-TCCG-T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
209758 AGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
209801 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGG-TCC--T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
209842 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
*
209886 AGGAGGGCCACTCCGAATTCCGATAGGGAGGAGTTGG-TCCGA-
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
209928 AGGACCACTCCG-A--CCGATAGGGAGGAGTTGGC
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGC
209960 AGGGTCAGGG
Statistics
Matches: 291, Mismatches: 7, Indels: 64
0.80 0.02 0.18
Matches are distributed among these distances:
36 18 0.06
38 1 0.00
39 99 0.34
41 2 0.01
42 36 0.12
43 30 0.10
44 2 0.01
45 4 0.01
46 99 0.34
ACGTcount: A:0.23, C:0.25, G:0.36, T:0.16
Consensus pattern (41 bp):
AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
Left flanking sequence: Indices 209092 -- 209591
GTGAGGTGCTTCACTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCG
TGGGTAAAGTGGACGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCG
CGGCCCGAATCAATATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGG
CCCCCCCACCCGTTAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGA
AATTAACGGTCAAATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAG
CGGAAGCGGCGCTTCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCT
CAGTTGGTTAGAGTGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTC
GACGAGTACTCGTTTACTTTCCCACCTCAGGGTCCGAACGAAGTG
Right flanking sequence: Indices 209960 -- 210459
AGGGTCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGC
GGGGTGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGC
ACCACGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGA
GTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGC
CCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCC
Found at i:209731 original size:85 final size:85
Alignment explanation
Indices: 209592--209959 Score: 617
Period size: 85 Copynumber: 4.4 Consensus size: 85
209582 GAACGAAGTG
209592 AGGACCACTCCG-A--CCGA-AGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
209653 AGAGGGAGGAGTTGGTCCGT
66 AGAGGGAGGAGTTGGTCCGT
209673 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
*
209738 AGAGGGAGGGGTTGGTCCGT
66 AGAGGGAGGAGTTGGTCCGT
*
209758 AGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
209823 AGAGGGAGGAGTTGGTCC-T
66 AGAGGGAGGAGTTGGTCCGT
*
209842 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
* *
209907 GATAGGGAGGAGTTGGTCCGA
65 GAGAGGGAGGAGTTGGTCCGT
*
209928 AGGACCACTCCG-A--CCGATAGGGAGGAGTTGGC
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGC
209960 AGGGTCAGGG
Statistics
Matches: 274, Mismatches: 7, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
81 12 0.04
82 19 0.07
84 7 0.03
85 235 0.86
86 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.36, T:0.16
Consensus pattern (85 bp):
AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
AGAGGGAGGAGTTGGTCCGT
Left flanking sequence: Indices 209092 -- 209591
GTGAGGTGCTTCACTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCG
TGGGTAAAGTGGACGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCG
CGGCCCGAATCAATATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGG
CCCCCCCACCCGTTAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGA
AATTAACGGTCAAATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAG
CGGAAGCGGCGCTTCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCT
CAGTTGGTTAGAGTGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTC
GACGAGTACTCGTTTACTTTCCCACCTCAGGGTCCGAACGAAGTG
Right flanking sequence: Indices 209960 -- 210459
AGGGTCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGC
GGGGTGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGC
ACCACGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGA
GTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGC
CCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCC
Found at i:210189 original size:35 final size:35
Alignment explanation
Indices: 210145--210271 Score: 184
Period size: 35 Copynumber: 3.7 Consensus size: 35
210135 CCTCCGATAG
* *
210145 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
* *
210180 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
* *
210215 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
*
210250 GAGGACAACTCCGACCGA-AGGG
1 GAGGACCACTCCGACCGACAGGG
210272 AGGAGTGGGA
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
34 3 0.04
35 82 0.96
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.10
Consensus pattern (35 bp):
GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
Left flanking sequence: Indices 209645 -- 210144
GAATTCCGAGAGGGAGGAGTTGGTCCGTAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCC
TCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGGGTTGGTCCGTAGGACAACTCCGAATTC
CGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGGTC
CTACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
CCGATAGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGGTCAGGG
AAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGGTGAGTG
GAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCACGCTAG
ACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAG
Right flanking sequence: Indices 210272 -- 210771
AGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACC
ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGT
TGGTCTGGGATGCCCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCCGGTGCTA
GCAAGAAGATGATGGACAACACCCCTTTAAGCGGGAAGCAGCGCTCAGCCGGTTTAAAGTCATGT
ATTTTAACCGATTTAAACCTTCATGAAGTTGCCTTCCGTAGGCCCCGACCCCCGGCTAACCATCT
AGGCGCACCACTACAGTGCTCTAGACAGATGGCGGCACTATAGTGATAAGGCGCTACGCGCTGAA
CCTTAGGGGCGCCGGAGGCAGCAGGTCGCCCCCCCCCTGCCCTACCAAGAGAGAACCGCTTTTTC
TATTTCCCGGCGCAAGCCATGGAGGTATGGCTGAGTGGCTTAAGG
Found at i:210325 original size:9 final size:9
Alignment explanation
Indices: 210269--210322 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
210259 TCCGACCGAA
210269 GGGAGGAGT
1 GGGAGGAGT
210278 GGGAGGAGT
1 GGGAGGAGT
210287 GGGAGGAGT
1 GGGAGGAGT
210296 GGGAGGAGT
1 GGGAGGAGT
*
210305 GGGGGGAGT
1 GGGAGGAGT
*
210314 TGGAGGAGT
1 GGGAGGAGT
210323 TGGTCCGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.20, C:0.00, G:0.67, T:0.13
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 209769 -- 210268
GAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGAG
TTGGTCCTACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTC
CGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGG
TCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGG
TGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCA
CGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACTCCGA
CCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 210323 -- 210822
TGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGA
GGAGTTGGAGGAGTTGGTCTGGGATGCCCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTT
TTCTGCCGGTGCTAGCAAGAAGATGATGGACAACACCCCTTTAAGCGGGAAGCAGCGCTCAGCCG
GTTTAAAGTCATGTATTTTAACCGATTTAAACCTTCATGAAGTTGCCTTCCGTAGGCCCCGACCC
CCGGCTAACCATCTAGGCGCACCACTACAGTGCTCTAGACAGATGGCGGCACTATAGTGATAAGG
CGCTACGCGCTGAACCTTAGGGGCGCCGGAGGCAGCAGGTCGCCCCCCCCCTGCCCTACCAAGAG
AGAACCGCTTTTTCTATTTCCCGGCGCAAGCCATGGAGGTATGGCTGAGTGGCTTAAGGCATTGG
TTTGCTAAATCAACATACAATAGTCTTGTATCATGGGTTCGAATC
Found at i:211497 original size:35 final size:32
Alignment explanation
Indices: 211418--211501 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 32
211408 CGGGTCCGAG
**
211418 GCGAGGACAACTCCGACCTACCGGGAGGAGTT
1 GCGAGGACAACTCCGACCTACCGGGAGGAGAA
* *
211450 G-GAGGACAACTCCGACCTACCGGGTCCGAGCGAA
1 GCGAGGACAACTCCGACCTACCGGG--AG-GAGAA
211484 GCGAGGACAACTCCGACC
1 GCGAGGACAACTCCGACC
211502 CTCTCCCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
31 23 0.52
32 1 0.02
33 1 0.02
34 3 0.07
35 16 0.36
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.10
Consensus pattern (32 bp):
GCGAGGACAACTCCGACCTACCGGGAGGAGAA
Left flanking sequence: Indices 210918 -- 211417
GTTCACCACCATCTGGAATTCTCGAGAATCGAGGGAACATCGTGGGCTAGTTAAGCCTAGCCTCG
GCCCCCTTTCTCTCCAGAAGAAAAAGGCGGGTAGCCTTCACTTATGGGAGTGACTACTCACTCGT
CGCCTACGAGTAGTCTACCTCACAGTAGTGGCGTTGCTCCGAATCACTGCCCGGGAGAGAGGCTG
AGCTATCGATAGCAAAGAGGCTGAGACGACCCTTATCCCAAAAGGGCGGCCCTCTCCTCCTTTCG
GTCGAGTGTCTATCGGCGAGGTAAGCGCGTAGCGCCCGCAGGCCTTCACGCTATGCGTTTTGGCC
TCGCCCTCTCCCTAATAAGGTCTCGTGTCTAAAGACCCGCATACATAATAGGCCCTTAGGCCACC
ACCCTAATATATTTATACGTGATTCTACCTCTTTTAGATCCAGGCTGCCCAACTCCTCTTTAAAG
GCGGAATTCAAATTTGTTGTCCTCCTGCCGGAGGGCGGGTCCGAG
Right flanking sequence: Indices 211502 -- 212001
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCG
AAGGGAGGAGTTGGGGGAGTTGGAAGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAAC
TCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTT
GGAGGAGTTGGGTCTTCGGATCTTCCTCTGTGACTGTAGTAGGCTCCATGAGGTAGACCTCCTGC
ATAGTCACACCTAGTGACCAAGGCACGGAGTCGGAGGACGGCTGAGTGTACTGCTTCTTGAGCCT
GAGGGTCACTTCCATCAACGTGAGGGTGCTGGACCTGAGCCTCTCAGAGAGGGTATATTCCCATT
TTACCCCTCTCTATCAAGGACAAACCCGCCTTTAAAGGTCCGAAC
Done.