Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065260
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 369673
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 4
Found at i:842 original size:35 final size:35
Alignment explanation
Indices: 803--929 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
793 TCCCACTCCT
803 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
838 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
873 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
908 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
930 TCGGACCAAC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 303 -- 802
ATTTCTTCCGGCCTCCTCCTACCCATCATCTATCTCTGGGTGCCTAGTAGGGGGACGAGGGTAAG
GGAAGTGACGGCAACGGCACTTACCGCCCTCCTATCGGGCCCGCCCGGAACTGTAGTACGCTCCC
GCCACAATGATGATGGGGTGGGCAGGGTAGCGCGTAGCGCTACCCGCTAGCACCCCCCTTAGGAG
GCTAGGGAAGCGGCTTCGAACCTTCATTAAGGAAACCCTTTGCGAAGTTGGCGAAGCAGAGCCTT
CGCTATCGTGGGTCCCCCCGGCAGGAGGACACTCCCCCCGGGGGAGGTTCCGACTATGGGAGGAC
ACTCGACCGAAGGGGTCAGGTTTGCCCCTTTAGTCCCCACCCACTTTAGAGAGGGTGGTGGGGCA
GGGCGTCGCCCAACTCCCTACCCACCACCACCCACCTTGTGGGCGGTGGTGGTTGTCCAACTCCT
CCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCT
Right flanking sequence: Indices 930 -- 1429
TCGGACCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCC
TTGGGACACCCCCAACCCTGGCTGGGGCCAGGGTAGCGCTACCCGCCCGGGTCCGCACCCCCCAG
GCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCTTCGGTCGGTTGAGTGGCTAAAGCC
CCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGGGTGAGTGGTTCGCGCTCAC
CTGAAGTTCCGGGTGCGCGTAGCGCCTCAACCACTATAGTGCTGCCCCTTTAAACCCCAGCAAGT
GGCCCTTTCGGCTCAGTTGGAAGCGCGTAGCGCACTGAATAATTCCGAAGTGCGCTACGCGCTGA
CAACCTGAATTACCCACTGTAGTAATATACCGGGTAAGTGCTACC
Found at i:1530 original size:35 final size:35
Alignment explanation
Indices: 1484--1610 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
1474 AAGGGTCCGT
* **
1484 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1519 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1554 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1589 AGGACCACTCCGACCTACCGGG
1 AGGACCACTCCGACCTACCGGG
1611 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 984 -- 1483
GGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCCTTGGGACACCCCCAACCCTGGCTGGGGCCAGGGTAGCGCTACCCGCCCGGGTCC
GCACCCCCCAGGCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCTTCGGTCGGTTGAG
TGGCTAAAGCCCCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGGGTGAGTGG
TTCGCGCTCACCTGAAGTTCCGGGTGCGCGTAGCGCCTCAACCACTATAGTGCTGCCCCTTTAAA
CCCCAGCAAGTGGCCCTTTCGGCTCAGTTGGAAGCGCGTAGCGCACTGAATAATTCCGAAGTGCG
CTACGCGCTGACAACCTGAATTACCCACTGTAGTAATATACCGGGTAAGTGCTACCCCCGCCCTG
CCGCCCTTCTAGAAATAAGTGCCCCTTTTTCACAGAAGGGTCCGT
Right flanking sequence: Indices 1611 -- 2110
AGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGCCA
GCCTCCGAAGGGACGGGGTGGAACTATAGGGCGGCCACCCGGCGGGAAGCGCGTAGCGCTTCAAC
TGAAGTCAGTCCCACCACAAGCCCTTCTCTCTTAAAAGGATTTATCCTGAGGATTTCAGTGGAGG
CACTTCCAGTGCCGAAGGCCCAGCAAGGCCGGCTTCACTATAGTGCGTTAGCGCTACCCAACTCG
TTAAAGTCTAAAGTCAATTAATTGAAAATTAATTGACTTTGAACGGAATTCCAATTTGTTGTCCC
CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTT
AGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGAC
Found at i:3395 original size:5 final size:5
Alignment explanation
Indices: 3385--3409 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
3375 CTTTTCAGAG
3385 AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA
3410 CCCCTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAGTA
Left flanking sequence: Indices 2885 -- 3384
ACAGTTATATGATTCCGGAGGAGGATTTGGAATTGGGTCAATTACGGTTACTGGAAGTGGACAAT
CGAGTGGTTGTACCAGCCAAGACTCATCTACGTGTGATTATAACACCTGCTGATGTGCCTCATAG
TTGGGCTGTACCTTCCTTAGGGGTAAAATGTGATGCTGTCCCTGGTCGTTTAAATCAGACTTCCC
TTTTTCTTAAACGAGAAGGGGTTTACTATGGTCAGTGCAGTGAACTCTGCGGAACCAATCATGCG
TTTACGCCTATTGTCGTAGAAGCTGCTTCTTCGGATGATTATCTCTCCTGGGTATCCAGCGGTCA
ATAACCAATGATGCTTGTGTTTATTGGACCTTCCATTGGGTACTATGACGCTAGTGCTTCCGGTG
ATGATTTTTTCGCCAAAAATCATTTTATTTTACTTTAATTTTCGTCTTCAATTAATTTTAAATTA
ATTGAAAATTAGTTGAATTCAGTGCGTCGAGTCCGCTTTTCAGAG
Right flanking sequence: Indices 3410 -- 3909
CCCCTTTTAATTAATTAAGTGCCGTTTCCTTTTTCCCTTTCTCTTTTAAGGGGGCTCTACGTGGT
AGTGTTTCCGGTGGGGATTTATCCGGGTTGGATCCTGCAGGAGGTGCCGGGAAAACGCTACGCGT
TTTCCTTCCGGCACTTCATAAATTGGGCTAAAGCACTCCCCTAACCACCCATGAATGGGTGGTGG
TGCCGGGGCGTTTAAAGGCACAGGGCCCAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCT
CCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCG
GGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGTAGAATACTTGACT
TTAAAGTTAAAGTACGTGACTTTAAAGGGTTAAAAGGCACGCGCCCCCTGCCCGAAAGGGCAACT
CCGACCTACCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGGAG
Found at i:5651 original size:64 final size:64
Alignment explanation
Indices: 5567--5731 Score: 312
Period size: 64 Copynumber: 2.6 Consensus size: 64
5557 GCCACTCCGA
*
5567 CCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
5632 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
5696 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
5732 GAAGGGAGGA
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
64 95 0.96
65 4 0.04
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (64 bp):
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
Left flanking sequence: Indices 5067 -- 5566
GGGCCAGGGGCCCCCAAGGGTCCGACCGAAGGGTCCGAGGCGAGGACAACTCCGACCGCGGGTCC
GAGCGAAGCGAGGACGACTCCGACCGAAGGGAGGAGTTGGGGGACAACCGTTGTATCCTTTCCTT
CCTTTGCCTAGCAGCCATCCTTCCTTTTTGAAGCGATTCCTTCGCGAGCGTATACTCGCAGCCAT
AGGTTTACTCTTCAGCCGATTCTCTGCCTTTTCGAAGCGCCTTTCCGAAGCAATTCTTTCTTCCC
TTTCTTTATTTCCCTCTCATTTTCTTTCTCCCTTTCCTTTCAACTCCTCCCTATCGGTCGGAGTG
GCCCTCCTTCGGAGGGCCCTGCAAGTTCACCAAAAGTGAAGTCGGTTGGAGGCGGTTTGAGGCAA
GGAGAGGCCATGTTCCAGAAGATGAAATCGAAGCTAAGCACCCAAACTAGGGGACACTTCACCTA
TGCGCAGCTTCGCTCACAGGGCCCTCCGAAGGAGGGCCACTCCGA
Right flanking sequence: Indices 5732 -- 6231
GAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGGAGGACCACTCCGACCGAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCTTTTCGAAGCAAATCCT
TCGATTCCTTCGAAGCCCAGCCTCCGGCACGAGGCCCAGCAGCCAGCCAAAGCCCAGCACAGTCC
AACACAGCCTTTCCACAGCCTTCTCTTCGAAGCTTTCCATTGCCCAGAGAATCGAAGCAAGTACC
AAGCACGTAGTGGGTGAGACTGCAACCTTGCAGCCTTGCCCAGCAGCATTCCTTTCTTCGCCTTG
CCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCGAGCGCAGCCTCGCAGCTGCCTTCTTTTTCTCT
ACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTGCTTGGTGAACAGCCTAAAGCATTACTTCTTCA
CGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGTATCTGCGAAACG
Found at i:5748 original size:9 final size:9
Alignment explanation
Indices: 5736--5764 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
5726 CCGACCGAAG
5736 GGAGGAGTT
1 GGAGGAGTT
5745 GGAGGAGTT
1 GGAGGAGTT
5754 GGAGGAGTT
1 GGAGGAGTT
5763 GG
1 GG
5765 TCCGGAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 5236 -- 5735
CTTCGCGAGCGTATACTCGCAGCCATAGGTTTACTCTTCAGCCGATTCTCTGCCTTTTCGAAGCG
CCTTTCCGAAGCAATTCTTTCTTCCCTTTCTTTATTTCCCTCTCATTTTCTTTCTCCCTTTCCTT
TCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTTCGGAGGGCCCTGCAAGTTCACCAAAAGTGA
AGTCGGTTGGAGGCGGTTTGAGGCAAGGAGAGGCCATGTTCCAGAAGATGAAATCGAAGCTAAGC
ACCCAAACTAGGGGACACTTCACCTATGCGCAGCTTCGCTCACAGGGCCCTCCGAAGGAGGGCCA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 5765 -- 6264
TCCGGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TGGGGGGAGTTGGCCTTTTCGAAGCAAATCCTTCGATTCCTTCGAAGCCCAGCCTCCGGCACGAG
GCCCAGCAGCCAGCCAAAGCCCAGCACAGTCCAACACAGCCTTTCCACAGCCTTCTCTTCGAAGC
TTTCCATTGCCCAGAGAATCGAAGCAAGTACCAAGCACGTAGTGGGTGAGACTGCAACCTTGCAG
CCTTGCCCAGCAGCATTCCTTTCTTCGCCTTGCCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCG
AGCGCAGCCTCGCAGCTGCCTTCTTTTTCTCTACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTG
CTTGGTGAACAGCCTAAAGCATTACTTCTTCACGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGT
ATCTGCGAAACGAAGCGCGTAGAAGCGCGTAGCGCCAACTACTAT
Found at i:6453 original size:17 final size:17
Alignment explanation
Indices: 6407--6442 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6397 ATCACCGCTT
*
6407 AAAGTCAATTATCGCCA
1 AAAGTTAATTATCGCCA
6424 AAAGTTAATTATCGCCA
1 AAAGTTAATTATCGCCA
6441 AA
1 AA
6443 TGTACATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (17 bp):
AAAGTTAATTATCGCCA
Left flanking sequence: Indices 5907 -- 6406
GCCAAAGCCCAGCACAGTCCAACACAGCCTTTCCACAGCCTTCTCTTCGAAGCTTTCCATTGCCC
AGAGAATCGAAGCAAGTACCAAGCACGTAGTGGGTGAGACTGCAACCTTGCAGCCTTGCCCAGCA
GCATTCCTTTCTTCGCCTTGCCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCGAGCGCAGCCTCG
CAGCTGCCTTCTTTTTCTCTACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTGCTTGGTGAACAG
CCTAAAGCATTACTTCTTCACGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGTATCTGCGAAACG
AAGCGCGTAGAAGCGCGTAGCGCCAACTACTATCTATCTTTCTCTCTGACGCGGATGGTTTTCAC
CAATCTTTAAAACAAAAAAGGAGGCACTTTTATTTTAAAAGGCTTGATTTGGTGATAACGGCACA
GGTGATAACTCTGGTCCTATCGCCAAATTCTGAATATCACCGCTT
Right flanking sequence: Indices 6443 -- 6942
TGTACATTATCACCAACTACAAAGAAGCCTGCGAATGGCACGACATCGACTTCTCGTGTCTCGAT
TCTGCTCTCTAGCACCCCATTTTAGGTAGGGAAAGCAAACAGAGGCACTCGATTTTAAGGTGGTT
TTATTTTACAAAGAGGGCCTGGGCAGCGCGTAGCGCTGAAACCCAATTCGCATCTTCCGATTCAG
TCGCATCTTCCGAAATTTCCTTTATGCGTTGGTAGGCTTTCGAAAGAACCTTTAATTGAATTTCA
TTGAAAATTAAAGCAAATTTACTTTAATTTTCAATTAAGTTAAATTAAAGTAACTTAGAGCATTA
AAGTAAATTTGTAAATTTACTTTAATTTTAGGAAAACGCGTGTTTCACGCTACGCTGTGGCGTTT
ACGCGCGAAGCGCCGCCTATCATAATAATGCGCTGGCTATTCTACTCCCGGGACCTCAGATTTCG
ACAGGCTGACCTTTACCCGTACAGATGGGATTCGATGGCATAGAA
Found at i:7808 original size:23 final size:22
Alignment explanation
Indices: 7774--7830 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
7764 GTATGCTCTC
7774 AGAAAGGGAAATATCTTTCCCAA
1 AGAAAGGGAAATATCTTTCCC-A
* * *
7797 AGAAAGGTAAATTTCTTTTCCA
1 AGAAAGGGAAATATCTTTCCCA
7819 AGAAAAGGGAAA
1 AG-AAAGGGAAA
7831 CCAACTCCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.10
23 26 0.90
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (22 bp):
AGAAAGGGAAATATCTTTCCCA
Left flanking sequence: Indices 7274 -- 7773
GCGCTCAGGCGTGTGGCCACAACTCACTGAGTGGGGTTAAAGTCAGTGAGGTTAAAGCGCGTAGC
GCCTAGACCCACCCACCTGCGCAAGCAGGAAGGGGCAGAGCAGCCTAGGCCGTAGCGGGTAGGGT
ACCATACCCAGGTAGGCGCGCTCTACCCAACGCGCCCTAGTAGCGCACTTTACTGTTGCTTTCCC
TTTATCTAATGCGCTTTCCCCTTCTTCGACTAACGCGCTTTCCTTTAAACAACGCGCTTTCCCGT
TAGCCGCCCGTTAGCCCGTAGGCACTTTCTAGCCTGTGAGCCCTAACAACGCACTTTCTCAGCCT
GTGAGCCTACAGCGCCTGGGCTGGGCTACAATAAGACCCAAAGCTGTATTATCGTACACTCCCTA
TGCGCATTTAAAAGCGCACTTTCCCGGGGTGCTATGTAATCTTTTCCGAAAATCTAGCGCTTTAA
AGGGCCCTTTATTTGAAAGGCCGATTTTCTTTAGCGTATGCTCTC
Right flanking sequence: Indices 7831 -- 8330
CCAACTCCCCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTAAC
AGCGTGGTTGTTTACTGATAAAAAAGGGCCTATCCGTTGATCTTGCTTCTGAACCCTCGCACCCG
CTTTAAAGGGCAAGAGCACCGATTAGGCCGCGGACCCACCCCCATGAAAGGCAGGCGGGAAGTTC
TCCTCTCAGGGAGGCCCCCTCCCCTGTCTGTTGGGCAGCCTTTTATGTGGGGCTTGGGCTCTGTC
TGTTGGGACCCGGGGCATTACTCTGTGGGCAGAAAGAGAGGCCGGTGGAAGGCTCCTAGCTTCCC
GGCAGGCTTTCTTCCTGGGCCGGCGGAAAGAAAGTGGCATTAGTCGGATCGTGAGATCGTTCTAT
CTACCATATTTTACGTCGACCCTCCGCACTGGAACCCTTTTTTTC
Found at i:7910 original size:35 final size:35
Alignment explanation
Indices: 7864--7948 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
7854 TCCTCCCTTC
*
7864 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
* *
7899 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
7934 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
7949 TCGGACCCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
Left flanking sequence: Indices 7364 -- 7863
CAGGAAGGGGCAGAGCAGCCTAGGCCGTAGCGGGTAGGGTACCATACCCAGGTAGGCGCGCTCTA
CCCAACGCGCCCTAGTAGCGCACTTTACTGTTGCTTTCCCTTTATCTAATGCGCTTTCCCCTTCT
TCGACTAACGCGCTTTCCTTTAAACAACGCGCTTTCCCGTTAGCCGCCCGTTAGCCCGTAGGCAC
TTTCTAGCCTGTGAGCCCTAACAACGCACTTTCTCAGCCTGTGAGCCTACAGCGCCTGGGCTGGG
CTACAATAAGACCCAAAGCTGTATTATCGTACACTCCCTATGCGCATTTAAAAGCGCACTTTCCC
GGGGTGCTATGTAATCTTTTCCGAAAATCTAGCGCTTTAAAGGGCCCTTTATTTGAAAGGCCGAT
TTTCTTTAGCGTATGCTCTCAGAAAGGGAAATATCTTTCCCAAAGAAAGGTAAATTTCTTTTCCA
AGAAAAGGGAAACCAACTCCCCCAACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 7949 -- 8448
TCGGACCCTAACAGCGTGGTTGTTTACTGATAAAAAAGGGCCTATCCGTTGATCTTGCTTCTGAA
CCCTCGCACCCGCTTTAAAGGGCAAGAGCACCGATTAGGCCGCGGACCCACCCCCATGAAAGGCA
GGCGGGAAGTTCTCCTCTCAGGGAGGCCCCCTCCCCTGTCTGTTGGGCAGCCTTTTATGTGGGGC
TTGGGCTCTGTCTGTTGGGACCCGGGGCATTACTCTGTGGGCAGAAAGAGAGGCCGGTGGAAGGC
TCCTAGCTTCCCGGCAGGCTTTCTTCCTGGGCCGGCGGAAAGAAAGTGGCATTAGTCGGATCGTG
AGATCGTTCTATCTACCATATTTTACGTCGACCCTCCGCACTGGAACCCTTTTTTTCTGGATCTG
TGCAAGGTCGATCAATCCCTCTTTCGTTTCCCCTGCCTACGGGCACCTCAGAAGGGATTTGCCCC
GGCAGGGGCAGCCTGCAGGGCGCCGGGCTCATCAAAGGGGTGGTA
Found at i:8628 original size:9 final size:9
Alignment explanation
Indices: 8616--8644 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8606 CCGACCGAAG
8616 GGAGGAGTT
1 GGAGGAGTT
8625 GGAGGAGTT
1 GGAGGAGTT
8634 GGAGGAGTT
1 GGAGGAGTT
8643 GG
1 GG
8645 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 8116 -- 8615
GTCTGTTGGGCAGCCTTTTATGTGGGGCTTGGGCTCTGTCTGTTGGGACCCGGGGCATTACTCTG
TGGGCAGAAAGAGAGGCCGGTGGAAGGCTCCTAGCTTCCCGGCAGGCTTTCTTCCTGGGCCGGCG
GAAAGAAAGTGGCATTAGTCGGATCGTGAGATCGTTCTATCTACCATATTTTACGTCGACCCTCC
GCACTGGAACCCTTTTTTTCTGGATCTGTGCAAGGTCGATCAATCCCTCTTTCGTTTCCCCTGCC
TACGGGCACCTCAGAAGGGATTTGCCCCGGCAGGGGCAGCCTGCAGGGCGCCGGGCTCATCAAAG
GGGTGGTAGAATCGAACCAGGCCCTTCCCAAACGCCTTAACCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 8645 -- 9144
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGTTGGTTAGCCCGGCACCAGGGTTGGTTAT
CTCATTTACCCAATTTGCCGGACTGATCGAGCTCATTTTCCCGGGCATTTTTCCCTTCTTATTTA
CCCAATTCTAGGTCTCGACCCGCCGGGGCCCTTTAACTTGTAACACAGATCGATGATAGCCCCAA
CTTTAAGCAGACATCTCGCAATGGCAGAACAGCCTACAAACGTTTTCTTGCCTTTCAAATAAAGT
TTCTATCCCAGGACCTTTTAAAAGTCGCCCCGAAATCACAATGAACCGATTAGTCGGTAGCGATT
TCGGGTGCGGAGCCGTCATTGTAAAAGGTAATCAGGTTGGCCTTTTAAAAGGGCCGAGAATATCA
CACGGTACACATTCGCCCGGAAGATATATGAACTCTTCCCAGAAGCCAATCATATCGATTTCGAT
AACAAATCCTTTAGACCCCCAGAAGTGCACAGATCAAGAAACTTC
Found at i:9684 original size:43 final size:43
Alignment explanation
Indices: 9623--9878 Score: 458
Period size: 43 Copynumber: 6.0 Consensus size: 43
9613 CTTTAAAAGG
*
9623 GTGAAGCGGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
9666 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9709 GTAAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9752 GTGAGGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9795 GTGAAGCGGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
* *
9838 GTGAAGCGGATGCCGCAGAGGCTGAAGCTGCGGCGGGCTCG
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCG
9879 AAGTAAGGCC
Statistics
Matches: 206, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 206 1.00
ACGTcount: A:0.21, C:0.23, G:0.43, T:0.12
Consensus pattern (43 bp):
GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
Left flanking sequence: Indices 9123 -- 9622
AGTGCACAGATCAAGAAACTTCTATCGAGTAGCAGCAGCTACTTCTGGGGCAACGATACCCCTTC
CGATAAGCACCAACAGCAGCAACCCAATGAATTAAGTACCGTTCAGAAGCCTCTAGAAATTGAAT
CTAATGCATACTCAGCACTAAAGGACTCTGACAATGGTTGTTTCGTGGGGACCCTGCCGCACGGG
GGCCCACTCGTCCATTGCTGTGTCACAGAAAACGGTGAAAGCTGATGTCACGGTTTCTTCACCTT
CCCATACGAGTGCCATAGTCCCTTCATCAGTACCTGCTGGTCACTCCGCAGGCGCCTTGTCTCCT
CGTCACGATTTTAGAAGCTGCTTCTAAAAGGCTCGGATGGAACATACCATTGCCATTCTAGAACA
TCAAGTCGCACTTAATGCTAAGACATTAAGTTTCGAGTCTTCTGATTCACGACTCCTAGAGAGCC
ACGGCTCTCAGGAGTCAAAAACCCTTGCTAGAGCCCTTTAAAAGG
Right flanking sequence: Indices 9879 -- 10378
AAGTAAGGCCGAAGACGCTGCTAAAGCGGATGCTGCGGCGAGCCCTTTAAAAGGGTGAAGCGGAT
GCCGCAGAGGATGACCCGACTAGCAAGTCGCCTGAGCCGCCTACTGAGGTTCAGTCCATTCATGG
TGATTTCCATGATGATGATTGGGCACTTTAAAGTGGAACAAGAGTGGTTAAGAGAGCTAGACGCG
GAAGAGGAGGAAATGGAACAATTTATGAGCCAGTTGTATGCCTCCCGCAGACCAGTGCCACCCCC
CTCTGGTACTTCGAGTGTGGAGAAGGAGATACAAGAGTTGGTGAGAAAGATAAGGGAGGAGAAAA
AGGAGGAAATGGAACAATTTATGAGCCAGTTGTATGCCTCCCGCAGGGAAGAAGTATGGGATGCT
GAGGCGGAGAAGCAGCCTTCTTCCTCCCTTGGGAAGACCCAGCTGCGCGCGTGCTACCACCAGTG
CCACCCTCCTCAACAACCGGGGTTCGCCGGGCCATTTGGAGGCCA
Found at i:12035 original size:35 final size:35
Alignment explanation
Indices: 11986--12118 Score: 223
Period size: 35 Copynumber: 3.8 Consensus size: 35
11976 GTTGGCCCTC
* * **
11986 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12020 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12055 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12090 CGAAGTGAGGACCACTCCGACCTACCGGG
1 CGAAGTGAGGACCACTCCGACCTACCGGG
12119 AGGAGTGGGA
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
34 5 0.05
35 89 0.95
ACGTcount: A:0.26, C:0.33, G:0.31, T:0.11
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
Left flanking sequence: Indices 11486 -- 11985
CGATTTCTCCGCCTTTCTAGCCTACCCGAGGTAGGAATGGTTGTGAGGCTGTTTTATGGTCACTG
AGTCTAGAGAATAAAAGGAAGACCACGTAGTTCTCGAACAAACTGAAGTTCATAGGAAGGGAAGC
GTAGCATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGA
ACAAACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTT
TTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGG
ATTTTTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTC
Right flanking sequence: Indices 12119 -- 12618
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAG
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGAGGAGTTGGCGG
ATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGTGAAGGGACCTATAA
AACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCATCAGCAAGGCCCTT
AGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAAAGAGTCGTCTCATA
GAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCACACTTCTGAAGGTAA
TTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCCCCCCTGCCCTCCGG
CAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGA
Found at i:12128 original size:9 final size:9
Alignment explanation
Indices: 12116--12169 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
12106 CCGACCTACC
12116 GGGAGGAGT
1 GGGAGGAGT
12125 GGGAGGAGT
1 GGGAGGAGT
*
12134 GGGGGGAGT
1 GGGAGGAGT
12143 GGGAGGAGT
1 GGGAGGAGT
*
12152 GGGGGGAGT
1 GGGAGGAGT
12161 GGGAGGAGT
1 GGGAGGAGT
12170 TGGTCCTCCG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 11616 -- 12115
GTAGCATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGA
ACAAACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTT
TTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGG
ATTTTTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 12170 -- 12669
TGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAG
GGAGGAGTTGGCGGATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGT
GAAGGGACCTATAAAACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCA
TCAGCAAGGCCCTTAGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAA
AGAGTCGTCTCATAGAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCAC
ACTTCTGAAGGTAATTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCC
CCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAA
Found at i:12143 original size:18 final size:18
Alignment explanation
Indices: 12120--12169 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
12110 CCTACCGGGA
12120 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
12138 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
12156 GGAGTGGGAGGAGT
1 GGAGTGGGAGGAGT
12170 TGGTCCTCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.70, T:0.12
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 11620 -- 12119
CATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGAACAA
ACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTTTTCG
ACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGGATTT
TTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGCAACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 12170 -- 12669
TGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAG
GGAGGAGTTGGCGGATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGT
GAAGGGACCTATAAAACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCA
TCAGCAAGGCCCTTAGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAA
AGAGTCGTCTCATAGAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCAC
ACTTCTGAAGGTAATTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCC
CCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAA
Found at i:13251 original size:79 final size:79
Alignment explanation
Indices: 13098--13267 Score: 270
Period size: 79 Copynumber: 2.2 Consensus size: 79
13088 CCGACCGATA
13098 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
1 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
13163 CCGAAGGGAGGAGT
66 CCGAAGGGAGGAGT
* * *
13177 TGGAGGAGTTGGTCCGGAGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGA
1 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
* *
13241 CCTACCGGGAGGAGT
66 CCGA-AGGGAGGAGT
*
13256 GGGGGGAGTTGG
1 GGGAGGAGTTGG
13268 GCCAAATTTC
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 32 0.39
79 51 0.61
ACGTcount: A:0.25, C:0.22, G:0.41, T:0.12
Consensus pattern (79 bp):
GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGT
Left flanking sequence: Indices 12598 -- 13097
AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTA
CTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCCGAGCGAGCGATAGTTTTTTTAT
GAGTCAACAACGCTACGGAATGGATTGATTCACGGTGGCACATGCTGACTGGAAACCACCGCCAC
AGCCGATAGAAAATCAACTCATTCGGTCCATGAAGGAACTTAAGACCCGGTGACGTGGCCTTTTC
TGGCCAAGAAAAGGGGCGGCCCCGCCCTACCCCTTGCCGTGGCCCAGGGCCGGGGATAGGGGGGC
CAGGGTAGGGGCAGGGGGCCCCCGCCGGGCGCGTAGCGCTACCATAAATACCTCTCCTTCCTGAA
CTCGTTAAGGCATAAGATTCTCAACTGCAAGCGCCGTATTCACTCGTTCTTTGGGGTTCTTTCAC
TCCCTCAATCAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATA
Right flanking sequence: Indices 13268 -- 13767
GCCAAATTTCACCGGTCGTGTGGGTGAAGGGAAAGGTTGTTGAATGTGACTCCTAGTCGATTTAG
TAGACTGCTTTCTGTTAGAAGTTATCTCCGTCTCCCCTTCAAACTTCACGAGAGTACTTCGCTTG
TGCTGCTTCCCTACACCGAAAGTCACTCTCGCAACACTGACAAGGAATGGAATTGATTTAAGCGC
TTAACTCCTAGCTCTAAGACGCCGGGATATGATTCAAGCATCTCGAAAGTGAGAAGGATTTCTGC
TTTCTCAGCCTGTTAACGGAAGATAAAACAATTGCTCTCCCCGCCCTGTGGGAATGGAAGTCAGT
CTGGTTTGCATTGCTATAGGGCTATGAAAAGCATCTCGAAAGTGAGGAGGGAAAAGAATGTACTG
GAAAAAGCTATCTGTACTGCTCTGTTGCAGCCCTTCAATCTTTTTCCAGGATCGGTTCAGCGGAT
CTCAGATCGGTGTCTAAACTTGATAGACGGACGATCGTTCGAATG
Found at i:14476 original size:40 final size:40
Alignment explanation
Indices: 14418--14527 Score: 211
Period size: 40 Copynumber: 2.8 Consensus size: 40
14408 AGAATGTAGC
14418 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
*
14458 CCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
14498 CCAACTCCTCCCTCTCGGAATTCGGAGTGG
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGG
14528 CCCTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.25
Consensus pattern (40 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
Left flanking sequence: Indices 13918 -- 14417
TTCGAACGTAGTCCCCACGCTCATTAAGTACGTACGCTACGCCTCGTAGCCTAGGTAATCTTGCT
GTCTAGTCCGGAACAACATAGGCTACGCGTCGTAATCCCGCCTACGTTGGGAAAAGATTCTTAGT
CCCACCACCGCTTAGATTGGGGAACGTAGGCATCAACCACAATTTGTAGGTCTCTCTTTCATGCA
CGTACGCTATGCATTTACTATGGAACTAGTCGTTGCTTCGCAGTCCTTATGTCCCTAGAAGGAAC
GTAGGCCTTCGGTAGGAGATGTAGCCCTCAGGGAAAGGGTCTTTTTTTAATCCCCCACCTCGTTC
GTGAGTCTGCAGCCCGTAGTTAGTTTGAATGTAGCTCACGTTCAACCTGGAGAAACAACGGCTAC
AATTTTGTAGGTCCCTCATTATGAAAGTTATCTGCCGGCATTCTTGCTTTCTAGTTCCCAAAAAG
GAACGTAGGCTATGCGTTGCAGTCCCTCAATAGGAAGAATGTAGC
Right flanking sequence: Indices 14528 -- 15027
CCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCC
TTTAGGCCAGCCCGGGGGGGCCGGAGGCCCCCCACCCCTTTCAGCAGGAGCCGATCAATTTCGTT
AATTTACTTTAATTTTAACTTAAATTCAATGCACTTTAACGCGCTGGTATTATACCGATTCGACC
AACGTTGAGTGCCCAGGAGGCGAATTGACCCGGAAAGGGCGACCTGTACCGCGGTTATGCAGGTC
CTTGGCCTAATCGACCCTTTAGTGCTTTCGGAAGTGTTCACGTGGAAGGGACGCAGTTTCCGGCC
CCAGAAACAGAATACCTCTAGAGCTACGACTATGATTTGCGCCTACAGGGCCTCGAGCGGAACGC
CCTAACGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTC
CGACCGAAGGGAGGAGTTGGAGGAGTTGGGTGGGTGCTATTGAAA
Found at i:16239 original size:24 final size:24
Alignment explanation
Indices: 16212--16260 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
16202 CCGTATTTCC
* *
16212 CATATACGTACAGAGCCTCTTTTT
1 CATACACGTACAGAGCCTATTTTT
*
16236 CATACACGTACAGAGCGTATTTTT
1 CATACACGTACAGAGCCTATTTTT
16260 C
1 C
16261 TTCCTCTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (24 bp):
CATACACGTACAGAGCCTATTTTT
Left flanking sequence: Indices 15712 -- 16211
CCTGAACGACAGATACGGATTCCCTTCACATGTTTGCACTTCCGAATCTCTTCAAATATGGATGT
ACAGATTTGTACAAATGATTCTCTTTCTTTTGATTTCCAAGAGATTTCTTGAGCTATTAGAGAAG
CACCTTGATAAGAAAAATTCGCTCTTACCGGCTTGATCAATATATTAGTGTTCGTTCGATTGGAC
GAGAAAGATTGCATTCTGGGCCACCAGGGTCTAATCTCTTTCCAGCAACAATGACTGCACATTCT
TCTTTTTCCTTCCATGAATCGGGCATCATTCCCCATAGACAGGCGCCCGCGAGCATCTATGAAGG
GAGAGGAACTGCGGCACGGGTCTCTTTTCCCAGGGATTGTACATTCACATTGGGCATCTCTCTCA
TGGGAGTAATTCCGGCAACACAAACCTCTAACTCCCGTACATAGAGCCTTATCTATAAACATACA
TTCCTTTTCCGGATCCCTTTCCATATATGTACATTCCGTATTTCC
Right flanking sequence: Indices 16261 -- 16760
TTCCTCTTTGTGAACCTAGGCCTTTTAAAGTTCCCGCCGCCGGTAGTATGCTTAGAACAAAACGC
TGTCACAGAATTGTCGTCAGGTGTGTTAACTGTAGTAGGGTCAAAATGAATTTTGTTTTTCATTC
CAAAAAAGGATTCCACAATCAAGGGCATAGTATGCGCAGTTGCTGCGAAAAGTCTATTTTTCGGA
GGCCGAGGCTGGCCCTTTAGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCTTCCAACCGCT
GACTCTAAGGAATCTATTCTGAATCTTTTGTATCGATGGTGATTTATTAGGGTATCCGGAGTAGT
GTTTTTTCCCTACGCGTTTACTTCCCTCTGCCCATTGCAGCTCTCTCGCTTCTCCGTCGTATGTA
CAACCTATACCCTTTATTTCTGTATCGTCCGTACCGTCAGCCCCTTTGTCAAATTTTCCTGTCTC
GAGGCGGCTAAGGCCTGTAGGCCTTGATTGGCGTCGTCGACGATG
Found at i:20223 original size:70 final size:71
Alignment explanation
Indices: 20123--20281 Score: 257
Period size: 70 Copynumber: 2.3 Consensus size: 71
20113 CGGGCAAAGT
*
20123 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGGGC
1 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
* *
20188 -TTTGC
66 GGTAGC
* * *
20193 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCCGCCCTGTCCGAGC
1 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
20258 GGTAGC
66 GGTAGC
20264 GAGGACAACTCCCCGAGC
1 GAGGACAACTCCCCGAGC
20282 TTTAAAGGAG
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
70 61 0.74
71 21 0.26
ACGTcount: A:0.16, C:0.35, G:0.39, T:0.10
Consensus pattern (71 bp):
GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
GGTAGC
Left flanking sequence: Indices 19623 -- 20122
GTTGTCCCGCCTCAAGACGCAAAGGGTTCGGCAGGGGGGTGCTCCGCACCCCCCGCGGGTAGCGC
GTAGCGCTACCCTGCCCCCTTCTAGAATTCGGAGGTAATAGTTTTTTTGTTGTTCCCCCATCTAT
TGTTGCTTTCTTATCCTGTTCTGCAACAAGTCCTCTTATTTAGGCCCTCTAGCCCGAGTCCTCAA
CGCCCTCCCCAGATCGAACCGGAGTTTAGGTATAGAGCTTGCCGGACCAAGCGTAGCCGGCCCCC
CGCCAAATGCTTTCCTCTCTTCGTAGGTCAAGCAGCGACGCTGCTTGCCCCGCTAGCAGATGGTT
TTTTTCATCAGCGGGAGACGTTTTGCTTAGCCTTACGGCGCTCTCGTTTCTGAGCATAGCGATGA
TTCAACGAGTTTAAAGGCGGTTTCACGCCTTCTAGGCCCGCCTAGGCAAGGCCTATCGACTTCCC
CTGTCGTCCGGTAAACGAAGTTATTTTTCAGGGTCCGGGCAAAGT
Right flanking sequence: Indices 20282 -- 20781
TTTAAAGGAGTTGGAAGAAAAGTCCAAAGCTAAGCGCTTTTAAGGGCCCTCCGATAGGAGGGCAA
CTCCGACCGATAGGGAGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATT
TAGTTTCAATTCAATTTAAGGCCTCCTTTCGGAGGACCCGTGAAGGGCCCTCCGATAGGAGGGCA
ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAG
GACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGT
CCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGGAGTTGG
TCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGC
Found at i:20636 original size:9 final size:9
Alignment explanation
Indices: 20624--20670 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
20614 CCGACCGAAG
20624 GGAGGAGTT
1 GGAGGAGTT
20633 GGAGGAGTT
1 GGAGGAGTT
20642 GGAGGAGTT
1 GGAGGAGTT
*
20651 GGAGGAGTG
1 GGAGGAGTT
20660 GGAGGAGTT
1 GGAGGAGTT
20669 GG
1 GG
20671 TCCGGAGGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.21, C:0.00, G:0.60, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 20124 -- 20623
AGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGGGCT
TTGCGAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCCGCCCTGTCC
GAGCGGTAGCGAGGACAACTCCCCGAGCTTTAAAGGAGTTGGAAGAAAAGTCCAAAGCTAAGCGC
TTTTAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGTCCTCACTTCGTTC
GGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGCCTCCTTTCGGAGGAC
CCGTGAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 20671 -- 21170
TCCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGGAGTTG
GTCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGCGCTAGCGCACCACCCGGCA
GCACTCGACGCTGCTGCCTGCCGGTTGCCCCGGCAACTGACCGTATGGTTGAGGTTCCGCCCTAG
GACTTTTGGTGGTCCAAAGGACCTCTAGGCAGTTCCTTTGGATACTCGACTGTGGCCAGGTTCCG
GGGTTTAAAGGTATAAAATGCTGATAGGCACGACCGGAAACTTCTCTCTCCCTTCGGCTTTCCGA
GGCACTTCTATATGAAGTGGAAAGCGCTAGCGCTTTATCCCCGACTGAACTTCGTAAAGAACCTT
TAATTTAATTTCATTGAAAATTAAAGCCCTCCCGCACGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTACTTTAATTTAATTTAATTGAAAATTAAAGTAA
Found at i:20710 original size:27 final size:30
Alignment explanation
Indices: 20680--20736 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
20670 GTCCGGAGGA
20680 CAACTCCG-A-CCGA-AGGGAGGAGTTGGC
1 CAACTCCGAATCCGATAGGGAGGAGTTGGC
20707 CAACTCCGAATTCCGATAGGGAGGAGTTGG
1 CAACTCCGAA-TCCGATAGGGAGGAGTTGG
20737 TCCGACCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.31
28 1 0.04
30 4 0.15
31 13 0.50
ACGTcount: A:0.26, C:0.23, G:0.35, T:0.16
Consensus pattern (30 bp):
CAACTCCGAATCCGATAGGGAGGAGTTGGC
Left flanking sequence: Indices 20180 -- 20679
GTCCGGGCTTTGCGAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCC
GCCCTGTCCGAGCGGTAGCGAGGACAACTCCCCGAGCTTTAAAGGAGTTGGAAGAAAAGTCCAAA
GCTAAGCGCTTTTAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGTCCTC
ACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGCCTCCTT
TCGGAGGACCCGTGAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGG
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGA
Right flanking sequence: Indices 20737 -- 21236
TCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGCGCTAGCGCACCACCCGGCAG
CACTCGACGCTGCTGCCTGCCGGTTGCCCCGGCAACTGACCGTATGGTTGAGGTTCCGCCCTAGG
ACTTTTGGTGGTCCAAAGGACCTCTAGGCAGTTCCTTTGGATACTCGACTGTGGCCAGGTTCCGG
GGTTTAAAGGTATAAAATGCTGATAGGCACGACCGGAAACTTCTCTCTCCCTTCGGCTTTCCGAG
GCACTTCTATATGAAGTGGAAAGCGCTAGCGCTTTATCCCCGACTGAACTTCGTAAAGAACCTTT
AATTTAATTTCATTGAAAATTAAAGCCCTCCCGCACGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTACTTTAATTTAATTTAATTGAAAATTAAAGTAAACCCGCTCCTCTCCTTTCAGT
CGAGTGTATGTCAACCTGGTGTACCCGGGGGTCCAGGTTGACATA
Found at i:23796 original size:9 final size:9
Alignment explanation
Indices: 23782--23819 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
23772 TCGCCTCGGA
23782 CCAACTCCT
1 CCAACTCCT
23791 CCAACTCCT
1 CCAACTCCT
23800 CCAACTCCT
1 CCAACTCCT
23809 CCAACTCCT
1 CCAACTCCT
23818 CC
1 CC
23820 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 23282 -- 23781
CTGTGCTTCGGAGACACGATTGAAGCCCAAGGATTATTGGTGCCGGTTGAACCCCGGGCTCCTTT
CACGACATGCTCTGGTCTCCCTTCGTTCCTCGAGGTGCCTTCCGTCGCTGTGGTATTATTTTAGC
GTTAGAATAAGTGGTGTCCGTCTCGTCGCGGACATCTGCAACGTCCCGACCGACATGATGCGGCG
GGCAATTCATTCGGTGACTTTTTCTTCGCGGTCGCCCTCACTAAACCAACTTGAATCTGAACTAC
GATTCAGATTAAGTCTGACCGAAATCGGATTGACTTTTTGTGCCATATCTTACTATCGTACCTTA
TTTCTTGGGTTGGGGGGGGCTAACGCGTTTTCCCCGCCGGGTTCTTCCTGTTAGGGAAGCTGGCC
AACTCCCCCCACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAG
GCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCCTCGGA
Right flanking sequence: Indices 23820 -- 24319
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGTTGTTTTTGAGGTTT
TTCGTGTAGAAGCAAACTCTCCGAATTTATGACCAACCTTTTCGTTCGTTATCCTCGAACGAACG
AAGACTTTTCCGGTATAGATTTGTGCATAGCAACCAACAAATTCGGGCAGGATAGAAGATCTACG
TGACCAAATTTTCCACTTGATCCTTTTGTTGTTTTTTGACATTTTTGCCTCGAAAAAAGGGCCTT
TCCATACAGATCGTGCCGTGAACTAATTTTGGCGTTTTCTAACCA
Found at i:23856 original size:34 final size:34
Alignment explanation
Indices: 23818--24030 Score: 417
Period size: 34 Copynumber: 6.2 Consensus size: 34
23808 TCCAACTCCT
23818 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23852 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23886 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23920 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23954 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23988 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
24022 CCCTATCGG
1 CCCT-TCGG
24031 AATTCGGAGT
Statistics
Matches: 178, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
34 174 0.98
35 4 0.02
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 23318 -- 23817
TTGGTGCCGGTTGAACCCCGGGCTCCTTTCACGACATGCTCTGGTCTCCCTTCGTTCCTCGAGGT
GCCTTCCGTCGCTGTGGTATTATTTTAGCGTTAGAATAAGTGGTGTCCGTCTCGTCGCGGACATC
TGCAACGTCCCGACCGACATGATGCGGCGGGCAATTCATTCGGTGACTTTTTCTTCGCGGTCGCC
CTCACTAAACCAACTTGAATCTGAACTACGATTCAGATTAAGTCTGACCGAAATCGGATTGACTT
TTTGTGCCATATCTTACTATCGTACCTTATTTCTTGGGTTGGGGGGGGCTAACGCGTTTTCCCCG
CCGGGTTCTTCCTGTTAGGGAAGCTGGCCAACTCCCCCCACTCCTCCCTTCGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCT
CGCCTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCT
Right flanking sequence: Indices 24031 -- 24530
AATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGTTGTTTTTGAGGTTTTTCGTGTAGAAGCAAA
CTCTCCGAATTTATGACCAACCTTTTCGTTCGTTATCCTCGAACGAACGAAGACTTTTCCGGTAT
AGATTTGTGCATAGCAACCAACAAATTCGGGCAGGATAGAAGATCTACGTGACCAAATTTTCCAC
TTGATCCTTTTGTTGTTTTTTGACATTTTTGCCTCGAAAAAAGGGCCTTTCCATACAGATCGTGC
CGTGAACTAATTTTGGCGTTTTCTAACCACTGTTTTGAATCCACTTTTGGTGGGCTTTCCCCAAG
GTGACACCGAAGGTCTACCTCCGGAAGTGCGTCCTTCACCTCCTCCATGAGGATGATCAACTGGA
TTCATAGCAACACCCCGAACAATGGGGCGTCTGCCTAACCACCGGCTTTCTCCTGCTTTGTCAAG
CTTACGTGTACCATGGTTGGGATTGGAAACTATACCAATAGTAGC
Found at i:27275 original size:21 final size:21
Alignment explanation
Indices: 27249--27302 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
27239 CCTATCGGGC
* *
27249 ACTTTAAAGTCGCGTATTTTA
1 ACTTTAAAGTCACGTACTTTA
27270 ACTTTAAAGTCACGTACTTTA
1 ACTTTAAAGTCACGTACTTTA
27291 ACTTTAAAGTCA
1 ACTTTAAAGTCA
27303 AGTATTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (21 bp):
ACTTTAAAGTCACGTACTTTA
Left flanking sequence: Indices 26749 -- 27248
TGCATGCTTCATCCAAAGGCCTTTCATCCGCCTCCGGCCCGTTTTTAAAATGCTTGGGTTCGAAG
ATTCTTTTCTTGTTTTGCTCCAAAAAAGCAGCCCGGATTCTCTGCGCCCAGAGAACGCTATGCGT
TCTCCACCTTCGCGGCGCCTTCGTTTTAGGAAGCGCTTTGCGCCGAACAGGACGTAGCACCCCTT
CGATCCATTATACCGAAGCAATCCAAGAAGAACGGTTTGGGTCATATTCGATTCTTTCTACAACG
CCCAAGGACGAAGTGCTTCGTTTCAAATCAATTCTTCGCTGCAATCGCTTTGAGCCACCCCCTCG
GTGAAAAACAGTAATCCGCCCTGATGGATTTCTCCCAGCAGACCTCCTTAAACTATTAGTTAATC
TCTTCAGTGCTTCTCGGCCACTTATCATTGATTCGGGGTTTTTTACTTTCTTCGAAGAAGCATCA
ATGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTATCGGGC
Right flanking sequence: Indices 27303 -- 27802
AGTATTCTACCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTA
GGCCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCTTT
AAAGCCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGAATTCCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCGGGC
GAAGCGAGGACAACTCCCCGAGCCGGGGAGTTGGGGTGTGACGACGTCCACACAGCAGGTGGTTC
TTCCGCTTCGCGGAAGCCGCCAACGTCATCAATCCATGTACTAGAGGATTGATTGCTCCGCACTT
AGCCATGAGATATATCACGTAGCTGATGCTACCCATGATGAGTGGGCCGCCTTCCTCCGGCCGGT
TAGGCTAGGTTGAGTGGGCCTTCTACAGTGGTTGGCTACGAATAC
Found at i:27490 original size:37 final size:37
Alignment explanation
Indices: 27440--27520 Score: 162
Period size: 37 Copynumber: 2.2 Consensus size: 37
27430 TTTAAAGCCA
27440 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
27477 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
27514 ACTCCGA
1 ACTCCGA
27521 CCGAAGGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (37 bp):
ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
Left flanking sequence: Indices 26940 -- 27439
CCTTCGATCCATTATACCGAAGCAATCCAAGAAGAACGGTTTGGGTCATATTCGATTCTTTCTAC
AACGCCCAAGGACGAAGTGCTTCGTTTCAAATCAATTCTTCGCTGCAATCGCTTTGAGCCACCCC
CTCGGTGAAAAACAGTAATCCGCCCTGATGGATTTCTCCCAGCAGACCTCCTTAAACTATTAGTT
AATCTCTTCAGTGCTTCTCGGCCACTTATCATTGATTCGGGGTTTTTTACTTTCTTCGAAGAAGC
ATCAATGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTATCGGGCACTTTAAAGTCGCGTA
TTTTAACTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGTATTCTACCGGTTTTCGCGACGGCG
CTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGCCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCTTTAAAGCCA
Right flanking sequence: Indices 27521 -- 28020
CCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGC
CGGGGAGTTGGGGTGTGACGACGTCCACACAGCAGGTGGTTCTTCCGCTTCGCGGAAGCCGCCAA
CGTCATCAATCCATGTACTAGAGGATTGATTGCTCCGCACTTAGCCATGAGATATATCACGTAGC
TGATGCTACCCATGATGAGTGGGCCGCCTTCCTCCGGCCGGTTAGGCTAGGTTGAGTGGGCCTTC
TACAGTGGTTGGCTACGAATACAGAGAGAGGTTTCTTCCTATTCCTTCCAATCAACTGCATAGGT
GCCGGGAAGCGTAGCTTCCCGCCGTAGGCGGGGGGTTAAAAGTAGCGCCCCCCTGCCCCACTATA
GTGCTGGCCGGCAAGGCCCGCCACTATAGTGCCTCAGTAGGAAGCTAAGCACACTGCATCACTAG
AGTTGTATGCAGCCACTATTCTATAGGGGGGAAACAAACTTAAAT
Found at i:28358 original size:34 final size:34
Alignment explanation
Indices: 28320--28384 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
28310 CCTCCCGGTA
28320 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
28354 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
28385 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 27820 -- 28319
TATTCCTTCCAATCAACTGCATAGGTGCCGGGAAGCGTAGCTTCCCGCCGTAGGCGGGGGGTTAA
AAGTAGCGCCCCCCTGCCCCACTATAGTGCTGGCCGGCAAGGCCCGCCACTATAGTGCCTCAGTA
GGAAGCTAAGCACACTGCATCACTAGAGTTGTATGCAGCCACTATTCTATAGGGGGGAAACAAAC
TTAAATTAATTGAAAATTAATGACGGGAAGCCGGCCACAACGAACAGCTTCGGAAGAGGGGAGGG
GGCACCCCCCGCCGGGCAGTTAAAAGTAGCGCTGCCCTGGCCAACTCCTCCAACTCCTCCCGGTA
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCT
TTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 28385 -- 28884
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGGCCCACTCCTCCCTCTCGGAATTCGGAGT
TGTCCTCCTGTCGGAGGACCCTGTTCGAAGCATTTTCATCGCACCGGCTTTCGGCAGGGCAGCCC
TGAGGCTGACCTTTAAAGGGGGTTTAAATACGCGCCCCCCTGCCTTTGGTGGGGCGTAGCCGGCG
CGTAGTGCTCCCACAATGGTTCCGCTAAAGTCCCACCTGCCGGGCTTGCCAGGGCCTGCCTTGGA
TTCGTGCAAACACAGTGTGATTCCGCACTTCTGTAGATAAGGTCGAAGCAATTCAACTCATCCTT
TAAAAGTCCGAGGCGAGGACCACTCCGACCTACCGGGAGGAGTTG
Found at i:30039 original size:35 final size:35
Alignment explanation
Indices: 29993--30061 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
29983 ACGGCCGCTG
29993 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
30028 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
30062 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 29493 -- 29992
CCGTCCCCCCCATGCCTGCTGGGTGGGGAGACTTTCCTTTGCCCCAAAAGGCAAAAATGCGTTGA
GCATTAAAGCCCAACAACTCCTTCAAACCCCACCCACTTCCTTGTGGGTGGTGGTGGGGCTTTAG
CCACTGGCTGGGGTAGGGGCCGGGGTGCGGACCCGGGCGGGTAGCGCGTAGCGCTACCCTGGCCC
CAGCAAGGGTAGGGAGTTGGCCTCCGCTTCCTTCTGATTATGCTGAGCCCCGGCCGGCAGACAGA
CTCTCTCGAAAGTGAGCCTCCCCGGCAGACAGGGACTTTGGTCAGATACAGATGGTTTATGCTAG
CTTTCAGGAGTCTTAGCAAGATCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTC
GGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAA
TTAAATTAAATTAAAGGTTCTTTGGGTTCGCTCGGACGGCCGCTG
Right flanking sequence: Indices 30062 -- 30561
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGGAGCGCTTTAAAA
GCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCTCCTTTAAAGGGCCAACTCCC
CCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGC
ACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCAACTCCTCCAACTCCCCCCCCTCC
TCCCACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGA
Found at i:30310 original size:9 final size:9
Alignment explanation
Indices: 30299--30343 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
30289 CTTCGGACCA
*
30299 ACTCCTCCA
1 ACTCCTCCC
*
30308 ACTCCCCCC
1 ACTCCTCCC
*
30317 CCTCCTCCC
1 ACTCCTCCC
30326 ACTCCTCCC
1 ACTCCTCCC
30335 ACTCCTCCC
1 ACTCCTCCC
30344 TTCGGTCGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.11, C:0.69, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 29799 -- 30298
TACAGATGGTTTATGCTAGCTTTCAGGAGTCTTAGCAAGATCAACTCCTCCCTCTCGGAATTCGG
AGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGG
CTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTTGGGTTCGCTCGGACGGCCGCTGA
GGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATT
AATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGGAGCGCTTTA
AAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCTCCTTTAAAGGGCCAACT
CCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTA
GGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCA
Right flanking sequence: Indices 30344 -- 30843
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGC
CTTACGGCTTCCCGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAA
CGGAGTTGGACCATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAAT
TCGGGTGGCCGATATACATGAATTTGGGTGGCCGATCACACAACATATTTGCGTATAATAGAACC
CTTCGCCCAGCACTCAAAACCAATGAACGTACGTGGGCGCAGGAA
Found at i:30427 original size:35 final size:35
Alignment explanation
Indices: 30347--30550 Score: 358
Period size: 35 Copynumber: 5.9 Consensus size: 35
30337 TCCTCCCTTC
* *
30347 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30381 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30416 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30451 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
30486 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30520 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
30551 TATCGGTCGG
Statistics
Matches: 165, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
34 63 0.38
35 102 0.62
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 29847 -- 30346
TCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGT
TTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTTGGGTTC
GCTCGGACGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATT
TAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTT
AAAGTCGGAGCGCTTTAAAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCAACT
CCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 30551 -- 31050
TATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGCTTCC
CGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTGGACC
ATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAATTCGGGTGGCCGA
TATACATGAATTTGGGTGGCCGATCACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCA
CTCAAAACCAATGAACGTACGTGGGCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTT
TTGTGGACTGAAGAGCACGGGACCAATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGT
TTGTGGCTTCGGAGCCGGAAACTGGAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTG
TAACGTGCATGACGAGCCGCAGTCGTGCATGCCGATAATTCCGCT
Found at i:30559 original size:104 final size:103
Alignment explanation
Indices: 30341--30563 Score: 358
Period size: 104 Copynumber: 2.1 Consensus size: 103
30331 TCCCACTCCT
* *
30341 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGTAGGTCGGAGTGGTCCTCACTTCGTTC
30406 GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
66 GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
30444 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 CCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC-GTAGGTCGGAGTGGTCCTCACTTCGT
* *
30509 TCGGACCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
64 TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
30548 CCCTATCGGTCGGAGT
1 CCCT-TCGGTCGGAGT
30564 TGCCCTCCTA
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
103 3 0.03
104 74 0.68
105 32 0.29
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (103 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 29841 -- 30340
AACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAA
TTTAGTTTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTT
GGGTTCGCTCGGACGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACT
TTAATTTAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGAC
CGCTTTAAAGTCGGAGCGCTTTAAAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTA
CGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGA
CCAACTCCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 30564 -- 31063
TGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGCTTCCCGCCGGGTGGGCT
GTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTGGACCATGAGCTTCAGTT
GAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAATTCGGGTGGCCGATATACATGAATTT
GGGTGGCCGATCACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCACTCAAAACCAATG
AACGTACGTGGGCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTTTTGTGGACTGAAG
AGCACGGGACCAATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGTTTGTGGCTTCGGA
GCCGGAAACTGGAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTGTAACGTGCATGAC
GAGCCGCAGTCGTGCATGCCGATAATTCCGCTTAGTGCATGACGA
Found at i:30752 original size:23 final size:23
Alignment explanation
Indices: 30722--30769 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
30712 TTTCTCTCCT
30722 ATATACATGAATTCGGGTGGCCG
1 ATATACATGAATTCGGGTGGCCG
*
30745 ATATACATGAATTTGGGTGGCCG
1 ATATACATGAATTCGGGTGGCCG
30768 AT
1 AT
30770 CACACAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (23 bp):
ATATACATGAATTCGGGTGGCCG
Left flanking sequence: Indices 30222 -- 30721
GTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTG
TCCTTCGGACCAACTCCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCTCCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGC
TTCCCGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTG
GACCATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCT
Right flanking sequence: Indices 30770 -- 31269
CACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCACTCAAAACCAATGAACGTACGTGG
GCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTTTTGTGGACTGAAGAGCACGGGACC
AATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGTTTGTGGCTTCGGAGCCGGAAACTG
GAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTGTAACGTGCATGACGAGCCGCAGTC
GTGCATGCCGATAATTCCGCTTAGTGCATGACGATAATTCCTTTTCTAAAGGGCCGTCCCATAAA
TTCTAGGCAGAGAATGTGCCGCTTGTGAACGTACGTGGGCGCAGGAAGCGCGTAGCGCAAGCCCG
GCCACTTCACGCACAGGTTCTGGCCCGGAAACTGAAGAGCACGTTGAAGTTCGCCGGTAGGCTAC
TTTGGAAGTAACGTGCATGACCACCTTGACGATAATTCCGTAGCG
Found at i:31967 original size:35 final size:35
Alignment explanation
Indices: 31923--31991 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
31913 GCGGTTAATC
31923 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
31958 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
31992 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 31423 -- 31922
CCCTACTTCTATGTGTTTTCGGTAAAAACGCTACGCGCTGCCCTTGCCAGGCCGGAGAAGGCCGA
GGAACGATAGGGGGCCCCCACCTACCTACCCACCACCACCACCCACAAAGTTGGTGGGTCAATGT
GGTATGTAAGGCCACCCACTTCTTCGTTTAAAAGGTGGCTAGGCTGATCAGGGTCCGACCGAAGG
GTCCGAACGAAGTGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTC
CGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGG
AGCGCGTAGCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 31992 -- 32491
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCGAGGGTGGCCCGCCCTTGCCAGGGAAGCGCGC
GCTTACCTGCCCCCCAACTTCTGAAGTTGTTGGCCTCTCCGTCGATTTTCCGCTGCCCGCGAACA
CTTCTGAAGTGTGCAGAGCTCACGCAACTCCGAGGGGTGCCAATCAAGTATATAGATAAGACGAC
CTTCATAGGGGCATAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAG
GTCAGGAACAATGGGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCG
GCATAAAAGCAATGGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCAT
CCACCCAGATCGGAAGAGATGGAAGTGGGGATCCGATCATTTCAA
Found at i:32797 original size:35 final size:35
Alignment explanation
Indices: 32758--32899 Score: 259
Period size: 35 Copynumber: 4.1 Consensus size: 35
32748 CCCCACTCCT
32758 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32793 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
32828 CCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32862 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32897 CCC
1 CCC
32900 TTCGGCCTTT
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
34 32 0.31
35 70 0.69
ACGTcount: A:0.11, C:0.31, G:0.32, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 32258 -- 32757
AGGGGCATAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAGGTCAGG
AACAATGGGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCGGCATAA
AAGCAATGGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCATCCACCC
AGATCGGAAGAGATGGAAGTGGGGATCCGATCATTTCAATATCTGCTGTTGAGGACTCGATTCCA
GGTATTCATAAAGCCTCAAATCTTTCCTTCTCTAGATCCCGATCCATGGGGGCAGTCACCATCTG
GGCATTCAATACCGACTTTAAAGGCCTGTTCTGGTCATCGGACTTAGTTCTTCCTCACCGACCGA
GTCATCGGGCCAACTCCGACCTACCGGGAGGAGTTGGCCCGAGGAGCCAAATAAGAGAAAGGAGA
GAAAGAAGCAAAAGCGTACAGGCGGAGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 32900 -- 33399
TTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCT
ATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAGAAGGTTCACTAACGCTCACCCTATTTGGT
GAGTGGCTCGCCCGAGTGTCCGAGAGATTCCTTTGCAGAGAACGGAGCTTCTTTTGTATACGCAA
TTTCACCGTTCCCCTGTAGCAATTCTTCACTGGCAAGACTCGGCTAACGAGTGTGACTAGGCCAG
TCATTGACGGGACAGCCTCTGCGGCTTTCCTTTTAGCTCCTCCGTTTCGCCCGCAGCACAACCAC
GCACGTGTTGGGACGGCTAGCATGCAGAACCCAAAGAGGGTAAAGGCCCAGGAAAGACATTTTAA
AAGGATCTCCTCTCAAGACTGGAAAGCAACACGCAGCACCGGCAACACTTATTGCACCCACATCA
CAACCAATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAG
Found at i:32876 original size:69 final size:69
Alignment explanation
Indices: 32765--32904 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
32755 CCTCCCGGTA
32765 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
32830 CTTC
66 CTTC
32834 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
32899 CTTC
66 CTTC
32903 GG
1 GG
32905 CCTTTAGGCA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.10, C:0.30, G:0.33, T:0.27
Consensus pattern (69 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTC
Left flanking sequence: Indices 32265 -- 32764
TAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAGGTCAGGAACAATG
GGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCGGCATAAAAGCAAT
GGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCATCCACCCAGATCGG
AAGAGATGGAAGTGGGGATCCGATCATTTCAATATCTGCTGTTGAGGACTCGATTCCAGGTATTC
ATAAAGCCTCAAATCTTTCCTTCTCTAGATCCCGATCCATGGGGGCAGTCACCATCTGGGCATTC
AATACCGACTTTAAAGGCCTGTTCTGGTCATCGGACTTAGTTCTTCCTCACCGACCGAGTCATCG
GGCCAACTCCGACCTACCGGGAGGAGTTGGCCCGAGGAGCCAAATAAGAGAAAGGAGAGAAAGAA
GCAAAAGCGTACAGGCGGAGCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 32905 -- 33404
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCTATCGG
TCGGAGTTGCCCTCCTATCGGAGGGCCCTAGAAGGTTCACTAACGCTCACCCTATTTGGTGAGTG
GCTCGCCCGAGTGTCCGAGAGATTCCTTTGCAGAGAACGGAGCTTCTTTTGTATACGCAATTTCA
CCGTTCCCCTGTAGCAATTCTTCACTGGCAAGACTCGGCTAACGAGTGTGACTAGGCCAGTCATT
GACGGGACAGCCTCTGCGGCTTTCCTTTTAGCTCCTCCGTTTCGCCCGCAGCACAACCACGCACG
TGTTGGGACGGCTAGCATGCAGAACCCAAAGAGGGTAAAGGCCCAGGAAAGACATTTTAAAAGGA
TCTCCTCTCAAGACTGGAAAGCAACACGCAGCACCGGCAACACTTATTGCACCCACATCACAACC
AATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAGGCATC
Found at i:33863 original size:48 final size:47
Alignment explanation
Indices: 33836--33943 Score: 189
Period size: 48 Copynumber: 2.3 Consensus size: 47
33826 TCGGTTAGGC
33836 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTA
1 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCC-A
33884 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTA
1 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCC-A
*
33932 GGGTGGAGACGC
1 GGGTGAAGACGC
33944 TCTCCTCGGA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.19, C:0.30, G:0.40, T:0.12
Consensus pattern (47 bp):
GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCA
Left flanking sequence: Indices 33336 -- 33835
ACTTATTGCACCCACATCACAACCAATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAGG
CATCGACCCGCACCCACACCTGCAGGGAGCACAGCTCCCCCGCCCTCCCCCGTAGCCCCCCGCAT
CCAGCCGCCGCACCCTAGCATCCTAGCTTTGGCTTCTGCCTAGCTTCCTTAGCGCTTCCGCTTCA
TCCGCTTCTGCCCGACGAGCATCCGCTTCATCCGCGGCCGCTTTAGCTAACGCCCTAGCAGCCCA
GCAACCCTTTAGGGCGTTCTTACCCCCTGCTCCACGTAGGCGGGTAGGCCCACTCACGTTGGGAA
CCGAATTAGTAAGTGAACCTAATTGGCACTAAACCATTAAGGGAACCATTAGTGAGTGGGCCTAA
TTAGGTGTGAGTGCTCTCAATGGCGGTGCGAGGTGTTTCCTCTTAGTTAGGTGTTAGGTGCAACT
AAGATTTGGTGCCCCTGATGCCGATTCAGCCAAGGTCGGTTAGGC
Right flanking sequence: Indices 33944 -- 34443
TCTCCTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCT
TTAGACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTT
TCCCTCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAA
TTTTCAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTT
CTTTGCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTG
CTTCAAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATT
TAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGACCAACTCCTCCAACTC
CTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACT
Found at i:34397 original size:9 final size:9
Alignment explanation
Indices: 34383--34420 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
34373 GTCCTTCGGA
34383 CCAACTCCT
1 CCAACTCCT
34392 CCAACTCCT
1 CCAACTCCT
34401 CCAACTCCT
1 CCAACTCCT
34410 CCAACTCCT
1 CCAACTCCT
34419 CC
1 CC
34421 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 33883 -- 34382
AGGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTAGGGTGGAGACGCTCTC
CTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCTTTAG
ACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCC
TCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTT
CAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTT
GCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTC
AAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAAT
TTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34421 -- 34920
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
CGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCG
Found at i:34558 original size:9 final size:9
Alignment explanation
Indices: 34544--34590 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
34534 GTCCTTCGGA
34544 CCAACTCCT
1 CCAACTCCT
34553 CCAACTCCT
1 CCAACTCCT
34562 CCAACTCCT
1 CCAACTCCT
*
34571 CCCACTCCT
1 CCAACTCCT
34580 CCAACTCCT
1 CCAACTCCT
34589 CC
1 CC
34591 CGGTAGGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.19, C:0.60, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 34044 -- 34543
GGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCCTCCCCTAGAAAGGCTTTCAACAGAAAGGCCG
CGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTTCAATTAATTGAAAATTCCTTTAAAGCGCTAA
ATTGAATTAAATTAAATTCTATTAGAATTTCTTTGCTTGCTTCAAATTCAATGAATTTTCAATTA
ATTTAAGCAGCGCTATTAAATTAGAATTTGCTTCAAATTAAATTAATCAAAAAACTCAAATTTTT
CACCAACTCTTTAAAGCGGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGG
AGTGGTCCTTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34591 -- 35090
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCT
GAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATATAGACTCCAGCCTCGAGAAGCGAGTCAC
ACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGTGCCTGCCT
Found at i:34667 original size:171 final size:169
Alignment explanation
Indices: 34383--34695 Score: 563
Period size: 171 Copynumber: 1.8 Consensus size: 169
34373 GTCCTTCGGA
* * *
34383 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGT
1 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGTAGGTCGGAGTGGTCCTCACTTCGT
*
34448 TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
66 TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTT
34513 CGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCT
131 CGGACCCT-TCGGTCGGAGTGGTCCTTCGGACCAACTCCT
*
34553 CCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
1 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCC-GTAGGTCGGAGTGGTCCTCACTTCG
34618 TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
65 TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
34683 TCGGACCCTTCGG
130 TCGGACCCTTCGG
34696 CCTTTAGGCA
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
170 42 0.31
171 95 0.69
ACGTcount: A:0.15, C:0.37, G:0.23, T:0.25
Consensus pattern (169 bp):
CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 33883 -- 34382
AGGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTAGGGTGGAGACGCTCTC
CTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCTTTAG
ACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCC
TCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTT
CAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTT
GCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTC
AAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAAT
TTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34696 -- 35195
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGC
CTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCT
TTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCG
GAGTTGCCCTCCTTCGGAGGGCCCTGAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATATAG
ACTCCAGCCTCGAGAAGCGAGTCACACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGTGCC
TGCCTTCATTCGGCCAGGAGGTGGTTCAACTACTTTAGTTGCTCTCTTTAGCTCCAATAGGTTCG
AGTGACGCCGGTTTACGTTGCTTTGACCGAAGCAGATGGGCACTC
Found at i:34697 original size:64 final size:64
Alignment explanation
Indices: 34596--34952 Score: 678
Period size: 64 Copynumber: 5.6 Consensus size: 64
34586 CCTCCCGGTA
34596 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
34660 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34724 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34788 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34852 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
34916 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
34953 TCGGAGTTGC
Statistics
Matches: 290, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
64 286 0.99
65 4 0.01
ACGTcount: A:0.15, C:0.28, G:0.32, T:0.25
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 34096 -- 34595
AACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTTCAATTAATTGAAAATTCC
TTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTTGCTTGCTTCAAATTCAAT
GAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTCAAATTAAATTAATCAAAA
AACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAATTTCATTGAAAATTAAAGG
TTCTTACGGTCGGAGTGGTCCTTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 34953 -- 35452
TCGGAGTTGCCCTCCTTCGGAGGGCCCTGAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATA
TAGACTCCAGCCTCGAGAAGCGAGTCACACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGT
GCCTGCCTTCATTCGGCCAGGAGGTGGTTCAACTACTTTAGTTGCTCTCTTTAGCTCCAATAGGT
TCGAGTGACGCCGGTTTACGTTGCTTTGACCGAAGCAGATGGGCACTCGAAAGCTGAGAGCCTAC
GACCTCTGCCTGGGTCGGCTAAAGGCTTTGTTGCCCCGGCAACCTACCTTCCCAACGCGCGGCTA
GCGTAGCGCTTCTCCCGATGATCTGCCCGGCTTCGAAAAACGAGTAGGCTTTCTCTAAAAGGATA
AAAACTCGTGGATTATGAATAGAAAATAATATTAAAAGACGTAATAAAACCTCTTTCATTGTTGC
CGTAGCCGCAGGAGGCCTCAGAAGCTACGAGGGAAGACGAAGAGG
Found at i:36703 original size:35 final size:35
Alignment explanation
Indices: 36654--36884 Score: 419
Period size: 35 Copynumber: 6.6 Consensus size: 35
36644 TAGGGCCCTC
* * **
36654 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36688 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36723 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36758 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36793 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36828 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36863 CGAAGTGAGGACCACTCCGACC
1 CGAAGTGAGGACCACTCCGACC
36885 GAAGGGAGGA
Statistics
Matches: 192, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
34 5 0.03
35 187 0.97
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
Left flanking sequence: Indices 36154 -- 36653
CTGCTGAATGGGCTCTAGCCCGCTGCGAAGCGGAATTGGCCCTTCTGAAGTGGTGCTTCGGCAGG
CGCTACGCGCTACCCGCGGGGGGTGCGGAGCACCCCCCTGCCGATAGCCCTTGTGGGCTTGTGCG
AGTAGCAGAGTATCACGCCTGAGAGGCCGGCTGAGTGAGTCCTTCTCCTTGCCCCCAGCCAAGAA
TCGTATTGGCAGTCATGGTCTGCCGTGCCTGCAGGACCCTCTAGTCTGCCTGATACGTCTTGGAC
TGGTTCGACGGTTGGACGGAGAAGTTTTCTTACATCCCGTATATGCGGACAGGAACGAGTTGTTT
GAAAGTTGAGCCAATAATGTTGTTGGTCAAGATGTGGTGTCCAGCCCACATTGGTACGGGTTTGA
TCGAAGCCATCGAGACTTTTCCTTAGCAAGAAGCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTTGCCCTGTAGGGCCCTC
Right flanking sequence: Indices 36885 -- 37384
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGGGGAG
TTGGAGGAGTTGGCTCTTTCTTGCCGGTACTTAATTTTCAATTAAATGCCATTGACTGGGAGCCC
GGCACCCATTCTGCATGGCAGGGAAAAGGAGGAGGCGCGTAGCAATAGAAAGGCATGCAGTAGTC
GTTAAAAACAACTACTGCATGCCCCTCTACCATATACGTCGTTTCTGCCTTGCCTAGGTCTGGCA
CGGGTCGGTGGTGCCTTGCCATTGGGTTGGTGTATGGGTGCCTAGGGCCTATTGGGTATGGGCAC
CCACTCACACGCTCGCTACCTTCGCAAGCAAACACGTATATAGATACAGGTTCTTCACCCTAACC
CGCTGGGGCAAAGCGAAGAACCACTCCCCGGGCCGGTGGTTCTGATGGCCCCTGCCCCCCACCAA
CTCGGTAGGTGGGGGGACCCACGCGCTTGCTCGTTCCTCGTCTAC
Found at i:36962 original size:9 final size:9
Alignment explanation
Indices: 36888--36959 Score: 117
Period size: 9 Copynumber: 8.0 Consensus size: 9
36878 TCCGACCGAA
36888 GGGAGGAGT
1 GGGAGGAGT
36897 GGGAGGAGT
1 GGGAGGAGT
36906 GGGAGGAGT
1 GGGAGGAGT
36915 GGGAGGAGT
1 GGGAGGAGT
36924 GGGAGGAGT
1 GGGAGGAGT
*
36933 GGGGGGAGT
1 GGGAGGAGT
*
36942 GGGGGGAGT
1 GGGAGGAGT
*
36951 TGGAGGAGT
1 GGGAGGAGT
36960 TGGCTCTTTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.19, C:0.00, G:0.68, T:0.12
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 36388 -- 36887
TCTAGTCTGCCTGATACGTCTTGGACTGGTTCGACGGTTGGACGGAGAAGTTTTCTTACATCCCG
TATATGCGGACAGGAACGAGTTGTTTGAAAGTTGAGCCAATAATGTTGTTGGTCAAGATGTGGTG
TCCAGCCCACATTGGTACGGGTTTGATCGAAGCCATCGAGACTTTTCCTTAGCAAGAAGCCAACT
CCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTTGCCCTGTAGG
GCCCTCCGAAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
CGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 36960 -- 37459
TGGCTCTTTCTTGCCGGTACTTAATTTTCAATTAAATGCCATTGACTGGGAGCCCGGCACCCATT
CTGCATGGCAGGGAAAAGGAGGAGGCGCGTAGCAATAGAAAGGCATGCAGTAGTCGTTAAAAACA
ACTACTGCATGCCCCTCTACCATATACGTCGTTTCTGCCTTGCCTAGGTCTGGCACGGGTCGGTG
GTGCCTTGCCATTGGGTTGGTGTATGGGTGCCTAGGGCCTATTGGGTATGGGCACCCACTCACAC
GCTCGCTACCTTCGCAAGCAAACACGTATATAGATACAGGTTCTTCACCCTAACCCGCTGGGGCA
AAGCGAAGAACCACTCCCCGGGCCGGTGGTTCTGATGGCCCCTGCCCCCCACCAACTCGGTAGGT
GGGGGGACCCACGCGCTTGCTCGTTCCTCGTCTACCTGGACGGTGGCACTGCCCGCCGGGTGCTC
CCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGC
Found at i:37923 original size:9 final size:9
Alignment explanation
Indices: 37909--37944 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
37899 TCCGACCGAA
37909 GGGAGGAGT
1 GGGAGGAGT
37918 GGGAGGAGT
1 GGGAGGAGT
*
37927 TGGAGGAGT
1 GGGAGGAGT
37936 GGGAGGAGT
1 GGGAGGAGT
37945 TGGTCCGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 37409 -- 37908
GTGCTCCCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAA
ACTGTCATGAAGACTACCCCTACGACCATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTT
AATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCG
CTTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTT
CGAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGA
GATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 37945 -- 38444
TGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACC
GAGAGGGAGGAGTTGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGA
GGACAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATT
CTTATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAAGA
Found at i:37933 original size:18 final size:18
Alignment explanation
Indices: 37910--37947 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
37900 CCGACCGAAG
37910 GGAGGAGTGGGAGGAGTT
1 GGAGGAGTGGGAGGAGTT
37928 GGAGGAGTGGGAGGAGTT
1 GGAGGAGTGGGAGGAGTT
37946 GG
1 GG
37948 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.63, T:0.16
Consensus pattern (18 bp):
GGAGGAGTGGGAGGAGTT
Left flanking sequence: Indices 37410 -- 37909
TGCTCCCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAAA
CTGTCATGAAGACTACCCCTACGACCATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTTA
ATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCGC
TTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTTC
GAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGAG
ATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 37948 -- 38447
TCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAG
AGGGAGGAGTTGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCA
CTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGAGGA
CAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATTCTT
ATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAAGAAGG
Found at i:37983 original size:36 final size:36
Alignment explanation
Indices: 37936--38052 Score: 144
Period size: 36 Copynumber: 3.1 Consensus size: 36
37926 TTGGAGGAGT
37936 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
1 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
*
37972 GGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAGA
1 GGGAGGAGTTGG---TCCGAAGGA---CCACTCCGACCGATA
* * *
38014 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
1 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
38050 GGG
1 GGG
38053 TCCGAACGAA
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
36 28 0.40
39 16 0.23
42 26 0.37
ACGTcount: A:0.23, C:0.26, G:0.38, T:0.13
Consensus pattern (36 bp):
GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
Left flanking sequence: Indices 37436 -- 37935
CTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAAACTGTCATGAAGACTACCCCTACGACC
ATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTTAATTGAATTTCCTTGAAAATTCAATGA
ACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCGCTTTTATGAGGCAAAAGAAAACCTCGA
GTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTTCGAGCCGGCATACCCGAGTTGCGAGGG
TTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGAGATTTCGCGGTTGGTACCTGGCTCTCC
GGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 38053 -- 38552
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTA
CCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCG
ACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACG
AAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTT
AAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAA
CTGCAAAGTGTAAGGGGTAATTCTTATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAA
GAAGGCTTTCTAAAGAGGCCTTTAAAGTGAGTGAGATACATGATTTAGACTCGGCCGACATGAGG
AGTATTTTCTTCAACGCCATATGGATCCCTTCCCCTTTGGAGGAA
Found at i:38089 original size:35 final size:35
Alignment explanation
Indices: 38032--38157 Score: 216
Period size: 35 Copynumber: 3.6 Consensus size: 35
38022 TTGGTCCTAC
* * **
38032 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38067 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38102 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38137 GGACCACTCCGACCTACCGGG
1 GGACCACTCCGACCTACCGGG
38158 AGGAGTGGGA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 87 1.00
ACGTcount: A:0.26, C:0.33, G:0.29, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 37532 -- 38031
GTTCTTTAATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAA
GGAATCGCTTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAA
CTGTTTTCGAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCC
TGGACGAGATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGG
AGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTC
GAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGA
GGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCC
TCCGAAGGAGGGCCACTCCGACCGAGAGGGAGGAGTTGGTCCTAC
Right flanking sequence: Indices 38158 -- 38657
AGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTG
CCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATTCTTATTCTATCAGGGTGG
CGGGGCCGAAGAAAATCTTTCTAAAGAAGGCTTTCTAAAGAGGCCTTTAAAGTGAGTGAGATACA
TGATTTAGACTCGGCCGACATGAGGAGTATTTTCTTCAACGCCATATGGATCCCTTCCCCTTTGG
AGGAACAGGAAACATTATTTGCCTTCCTCATGAGCCACCCCCTGGTGGCTGTTGCTTGTGCCTCG
ATTCTGATTTTCGTCCTATGGATGTTGGTTCGCACTTTATGGCAT
Found at i:42080 original size:35 final size:35
Alignment explanation
Indices: 42038--42138 Score: 202
Period size: 35 Copynumber: 2.9 Consensus size: 35
42028 TCCGACCGAA
42038 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
42073 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
42108 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
42139 GAAGGGAGGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.26, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 41538 -- 42037
TTGCAGAAACACTTCGCGAAGAGAGCGGGGGTTAAAAACGTGGATTTTTACACCACGTAGCCCCC
CAACGGAATTTCAATAGCACCCACCCTGATGCTATGTAACTATGCCTCGGCCCTTGAGGTTTGGA
AAGACCAAACTTCTATACCTCTTCCTCTCCGTTACTCTCGGCATGGTCATATATATCGACAGAAT
CAAAAGCAATTAGCCGGATTTCTTTAACGGCCGGCCGAGAAAAACGTCGAAGTTAGCAAGAGGTA
ACCTCTTCTATGGGCCTTTAGGCACTCGACCGATAGGGAGAGGCACAAAATTTCCTATTGGTTGG
GGCGCCCTTACAATAGGCATCATGCATGTGGGCTTTAAACCCCCTACAGTACCCCGCCCCCCACC
TACGCGCCTAGCCCGGTGAGTTCGCTTCGCGCCGGCTGGAACCTCAACGCTCTCATTCAGTGGGG
GCAGGGAACTTCCCCCAACCCAACCCTTCCCTTCCTCCGACCGAA
Right flanking sequence: Indices 42139 -- 42638
GAAGGGAGGAGTGGGGGGAGTTGGAAGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTT
AAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGC
CGTGGCGGGAGGAGTGGGGGGAGTTGGCCTTGCCGGCCAACGACCGATAGGGAGTTGGGGTTGGC
CTCTCCTAGATGTTTGGGATACGCAGTGTCCCACACGTGCATGGTGTCCATCGTTGATTTTTCTA
CAGGAAGATGGCCTCTGTGTTGATGTTTGATGGTGGCGTACTCGGGCCCGGCTTTGCTCCCCTGC
CTGGCAGAAGGGCACTAAAGAGTTTGCTAGCGGACCAGGCCACAGGGAGTTACTATTTTCTGCTA
GTCACTGGAGGCCTCGGAAATCGGATACACCCCAACCCTACAACAATACACCGGTACAGCTGGTT
CCCTACCCCTACCAGATACTCGTCGGGGTACCGGGGCAGTGTTCA
Found at i:43356 original size:39 final size:39
Alignment explanation
Indices: 43302--43469 Score: 336
Period size: 39 Copynumber: 4.3 Consensus size: 39
43292 AGGAAGCAGG
43302 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43341 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43380 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43419 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43458 CCAACTCCTCCC
1 CCAACTCCTCCC
43470 ACTCCTCCCG
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.15, C:0.38, G:0.21, T:0.25
Consensus pattern (39 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
Left flanking sequence: Indices 42802 -- 43301
TGGCTTGGGGCCGAGGTAGGCTGGGGGGAACTCAAAATAAGTTTCTTCTTCTGAATTCAACTAAT
TTTCAATTAATTGAAAATTAGTTGAATTCAGCGCGCGCGAAAAGCTTATTCTTCTTCTTCAGCTT
CCGGCCGGGGAGGGGCTTCTTCTTCTCTGGTTGCAGGAGGCTCTTCTTCTTCATCTCCTAAGTTG
TTTCTGCTGAAGCGGCTGGTAGGTACCGCTCAGGCGGCTTCTTCTTCCGTTTCAGCTGGTACCGC
CTTTGTTTTGCTGTTTCTGGTGATTATGATTATGATTATGATTCTGATCATACTGGCCTGCCGGG
TGAAGACGGGCGGGAACGCGAACGCGAACGCGATTAAGAAAAGAATATTGGGAGCGTTTTCAGCC
TTTAAAGAAAGAGTGACGGCAACATCAATTTCATGCGATGCTCTGCTTGATGTGGAGAGCAGAGA
AGTTTTTGAAATGATTAAGTAGTACTCTGTAGTGTAGGAAGCAGG
Right flanking sequence: Indices 43470 -- 43969
ACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTGGGACATAGTGCCTGAGTGCCCGCACTGCACCGCATTGCGTAGC
AGGAAAAGCCCTTTCGATGATGATGGGTAAGTAGCTGGAGGTGGGAAGCCCTAACCCCGCTTCCG
GTTGCCCAGAGTTCATCGGCGAACTGGACCCAGCGATTAGAGGGGCCAGCTTAGAAAGTTTTAAA
CCCAAAACGCTCCAACCACCCTCCGGAGAAACAAACTACGATGGCCTTCCGGCTTGCGACTGGAG
TAGGCCACACCTTTAACCCTTCTTACTATACTGATACTGAAGTACCAAGTAGGGGAACAGTACTT
CATTGCCGGGCGAAAGCCTAGCCTGTAGTACAACTACTTAATAGT
Found at i:43619 original size:35 final size:35
Alignment explanation
Indices: 43476--43618 Score: 259
Period size: 35 Copynumber: 4.1 Consensus size: 35
43466 TCCCACTCCT
43476 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
43511 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
43546 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
43581 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
43616 CCC
1 CCC
43619 TTGGGACATA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 105 1.00
ACGTcount: A:0.11, C:0.31, G:0.32, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 42976 -- 43475
TCTTCTTCATCTCCTAAGTTGTTTCTGCTGAAGCGGCTGGTAGGTACCGCTCAGGCGGCTTCTTC
TTCCGTTTCAGCTGGTACCGCCTTTGTTTTGCTGTTTCTGGTGATTATGATTATGATTATGATTC
TGATCATACTGGCCTGCCGGGTGAAGACGGGCGGGAACGCGAACGCGAACGCGATTAAGAAAAGA
ATATTGGGAGCGTTTTCAGCCTTTAAAGAAAGAGTGACGGCAACATCAATTTCATGCGATGCTCT
GCTTGATGTGGAGAGCAGAGAAGTTTTTGAAATGATTAAGTAGTACTCTGTAGTGTAGGAAGCAG
GCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCCTCTCGGAATTCGG
AGTGGTCCTTCGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCC
TCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCT
Right flanking sequence: Indices 43619 -- 44118
TTGGGACATAGTGCCTGAGTGCCCGCACTGCACCGCATTGCGTAGCAGGAAAAGCCCTTTCGATG
ATGATGGGTAAGTAGCTGGAGGTGGGAAGCCCTAACCCCGCTTCCGGTTGCCCAGAGTTCATCGG
CGAACTGGACCCAGCGATTAGAGGGGCCAGCTTAGAAAGTTTTAAACCCAAAACGCTCCAACCAC
CCTCCGGAGAAACAAACTACGATGGCCTTCCGGCTTGCGACTGGAGTAGGCCACACCTTTAACCC
TTCTTACTATACTGATACTGAAGTACCAAGTAGGGGAACAGTACTTCATTGCCGGGCGAAAGCCT
AGCCTGTAGTACAACTACTTAATAGTACCAAAGGCGACCCCAGACCACGTAGGAAGCGAAGCTTC
TGGGAAAGTGCTTTCCGCTTATAGGAACTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCG
CGAATAGGCAATAAAAAAGAGGGGATTTCTACGCTTGGGACTGGG
Found at i:44575 original size:37 final size:37
Alignment explanation
Indices: 44529--44804 Score: 328
Period size: 37 Copynumber: 7.8 Consensus size: 37
44519 AATGTTGTTA
*
44529 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
44566 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
44603 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
44634 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
44671 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
44702 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
44739 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
*
44776 CTTTCATTTTCAAGGAAATTAAATTAAAG
1 CTTTCATTTTCAATGAAATTAAATTAAAG
44805 TAACCTCACC
Statistics
Matches: 201, Mismatches: 22, Indels: 32
0.79 0.09 0.13
Matches are distributed among these distances:
31 44 0.22
32 2 0.01
33 2 0.01
34 4 0.02
35 2 0.01
36 2 0.01
37 145 0.72
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (37 bp):
CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Left flanking sequence: Indices 44029 -- 44528
ATAGGAACTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCGCGAATAGGCAATAAAAAAGA
GGGGATTTCTACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAA
CTCAAATTGACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATA
GATAAGGTTTAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGC
GCCCGGCACTGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAA
TAACGAACGGCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGC
GTTCTTTGGCAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCG
AAAACCGTAAGAACCTTTAATTTTCAATGAAATTCAATGTTGTTA
Right flanking sequence: Indices 44805 -- 45304
TAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAA
GACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAG
GACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCT
TGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGA
GGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGT
TCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTA
TACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGC
AGGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCT
Found at i:44608 original size:68 final size:68
Alignment explanation
Indices: 44536--44804 Score: 243
Period size: 68 Copynumber: 3.9 Consensus size: 68
44526 TTACTTTAAT
* * *
44536 TTTCA-ATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAA
1 TTTCATATGAAATGAAATTAAA-GGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAA
44600 ATCC
65 ATCC
* ** * * ****
44604 TTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
44669 TCC
66 TCC
* ** * * ****
44672 TTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
44737 TCC
66 TCC
* * * *
44740 TTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAAGGAAATTAAATTAAAG
1 TTTCA---T--ATGAAATGAAATTAAA-GGAAAATACTTTAATTTTCAATGAAATTAAATTAAAG
44805 TAACCTCACC
Statistics
Matches: 169, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
68 117 0.69
69 11 0.07
71 1 0.01
73 11 0.07
74 29 0.17
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (68 bp):
TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
TCC
Left flanking sequence: Indices 44036 -- 44535
CTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCGCGAATAGGCAATAAAAAAGAGGGGATT
TCTACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAAT
TGACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGG
TTTAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGC
ACTGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAA
CGGCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTT
GGCAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCG
TAAGAACCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAAT
Right flanking sequence: Indices 44805 -- 45304
TAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAA
GACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAG
GACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCT
TGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGA
GGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGT
TCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTA
TACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGC
AGGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCT
Found at i:44643 original size:31 final size:31
Alignment explanation
Indices: 44603--44721 Score: 114
Period size: 31 Copynumber: 3.6 Consensus size: 31
44593 AGGGAAAATC
*
44603 CTTTCATTTTCAATGAAATTCAATGTTGTTA
1 CTTTAATTTTCAATGAAATTCAATGTTGTTA
* * * *
44634 CTTTAATTTTCAATGAAATTAAAT-TAAAGGGAAAATC
1 CTTTAATTTTCAATGAAATTCAATGT----TG---TTA
*
44671 CTTTCATTTTCAATGAAATTCAATGTTGTTA
1 CTTTAATTTTCAATGAAATTCAATGTTGTTA
44702 CTTTAATTTTCAATGAAATT
1 CTTTAATTTTCAATGAAATT
44722 AAATTAAAGG
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
30 1 0.01
31 42 0.61
34 2 0.03
37 23 0.33
38 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (31 bp):
CTTTAATTTTCAATGAAATTCAATGTTGTTA
Left flanking sequence: Indices 44103 -- 44602
TACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAATTG
ACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGGTT
TAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGCAC
TGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAACG
GCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTTGG
CAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCGTA
AGAACCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAG
GGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Right flanking sequence: Indices 44722 -- 45221
AAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTC
AAGGAAATTAAATTAAAGTAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCG
ACAGACTCTCGCTCGAAAGACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCC
GGGAGAAAGTAGGCTAAGGACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCC
ATTATGTTACCTAGCCCTTGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGG
TAGCCGACAGAAAAACGAGGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAA
TCAGATCTGTATACGTGTTCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATT
CCTAGAGTCAACAGGCTATACGAGACCTTGTTTTGGTTCTCAGAA
Found at i:44679 original size:105 final size:103
Alignment explanation
Indices: 44497--44805 Score: 387
Period size: 105 Copynumber: 3.0 Consensus size: 103
44487 ACCGTAAGAA
44497 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
44562 AATCCTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAAT
66 AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGG---AT
*
44602 CCTTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
* * *
44667 AATCCTTTCATTTTCAATGAAATTCAA-T---GTTGTT
66 AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGGAT
* * * * * *
44701 ACTTTAATTTTCAATGAAATTAAAT-TAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTA
1 CCTTTAATTTTCAATGAAATTCAATGT----TG---TTACTTTAATTTTCAATGAAATTAAATTA
*
44765 AAGGGAAAATCCTTTCATTTTCAAGGAAATTAAATTAAAGT
59 AAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGT
44806 AACCTCACCT
Statistics
Matches: 179, Mismatches: 13, Indels: 20
0.84 0.06 0.09
Matches are distributed among these distances:
98 1 0.01
99 23 0.13
101 1 0.01
102 2 0.01
104 1 0.01
105 148 0.83
106 1 0.01
109 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.39
Consensus pattern (103 bp):
CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGGAT
Left flanking sequence: Indices 43997 -- 44496
AAGCGAAGCTTCTGGGAAAGTGCTTTCCGCTTATAGGAACTGCCAAAGTGGTTAGTCCACCCGGA
CATTTGGTGGCGCGAATAGGCAATAAAAAAGAGGGGATTTCTACGCTTGGGACTGGGGGGCCGCC
ATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAATTGACCAAATGAGCAAGGCTCATCGCC
TCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGGTTTAATTCTTTCTTGGGGGGCCGAGC
TTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGCACTGGGGGCGGAAGCTACTTTGCGAC
CCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAACGGCATTTCGCTAGTCTCACTGCACT
GGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTTGGCAGGGCAGCGCTACGCGCTGCCCG
GGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCGTAAGAA
Right flanking sequence: Indices 44806 -- 45305
AACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAAG
ACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAGG
ACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCTT
GGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGAG
GTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGTT
CTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTAT
ACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGCA
GGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCTA
Found at i:46552 original size:39 final size:39
Alignment explanation
Indices: 46492--46675 Score: 347
Period size: 39 Copynumber: 4.8 Consensus size: 39
46482 CCGATAGGAC
46492 GGCAACTCCG-A--CCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46528 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46567 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46606 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46645 GGCAACTCCGAATTCCGATAGGGAGGAGTTG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTG
46676 AACAAGTGAA
Statistics
Matches: 145, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
36 10 0.07
37 1 0.01
39 134 0.92
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (39 bp):
GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
Left flanking sequence: Indices 45992 -- 46491
ATTGCCGGGTCTTCGACCAAGGGACGATGTCCAAGCCTACTATACTTGCCGGGGCTTAATGAAGG
ACTTCGGAACAGCTTAAATTACTTTAATTTCAAAAACCTTTCATTTTCAATGAAATTAAATTAAA
GTAACTTTACGCCGATAGTTCGAGGTTCTTTTCGGCCGGGAAGATCCACTGAAGGGTAGGCTGGG
GTAGGAGCGTAGTACTAGGGTAAGCTAAAGCGCATTTGAGTGCGAGTGCACTTAAAACTCCCTAA
TTACGCTAAAGAACCTTTAATTTTCAATTAAATTAAAGGTTCTTTCGTCCAAGAAAAGTTCGAAT
TGGAAGGAATAGATCTTTTCACTCATAGTATTATCTCCCCCTAATACTCTGGAAAGTATGTCCTT
CGCTACTCGGTATAGATTATTCGGAAAGAAATTACGAATTTTTCGACCATAGCTACGTGTCGGAT
GTTGACTTCTTAGAAACTTCACTCTCAAGGGCCGTCCGATAGGAC
Right flanking sequence: Indices 46676 -- 47175
AACAAGTGAACGTTTCTCTATCTACGTGTTTCCCGAAGTGCACCTCACTTCAGTGCACTCCTTTA
AAGAGCCAGAGGAAAGTTCTCTATTGTCTGGCTTCCGCCTTGTGCCTCCACACTAGTGCCCCCGT
AGGGGGACCACTATGGTTCTAGGCCACCACAACAGCGGGAGTGATAAACAGGATATGAATCCCCC
AGTCCTCTTTCCGTCCTGCCCATCCGACTCCCCCTCCCATCTTTGACTCGATTAGCCGATTCCCG
AAGACTGATCCTATCTATTGCCAGGTGGAAGAAAGGCTAGGCTCCCGAGCTGCCTCCAGGGAAGC
GTACGCGGTTTTGGGTTTCTGTGCAAGAGAGTGATGTCTTTAAAGCATGCTTGCATGCAACTTCT
TCGCGTGCCTTCTCGCGAAAAACCAAGATTGTGTAGGTAAGTTTACTTTAATTTTAAATTAAATT
AAATTAAAGAATCCCCACATGACTTTAAAAGGTACTTAATAGGAA
Found at i:48110 original size:51 final size:51
Alignment explanation
Indices: 47997--48094 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
47987 GTCTATCGGA
* * *
47997 GAATGAGCTGAAGGAGCCCTGCCGGGGAATGAGCTGGATTGAGCCTGTCAGG
1 GAATGAGCTG-AGGAGCCCTACCGGAGAATGAGCTGGAGTGAGCCTGTCAGG
* *
48049 GAATGAGCTGAGGGGCCCTACCGGAGAATGGGCTGG-GTGAGACCTG
1 GAATGAGCTGAGGAGCCCTACCGGAGAATGAGCTGGAGTGAG-CCTG
48095 CCGGGAAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
50 4 0.10
51 26 0.65
52 10 0.25
ACGTcount: A:0.22, C:0.19, G:0.42, T:0.16
Consensus pattern (51 bp):
GAATGAGCTGAGGAGCCCTACCGGAGAATGAGCTGGAGTGAGCCTGTCAGG
Left flanking sequence: Indices 47497 -- 47996
AACAAGCAATCAGGTATATAGATAGTTGGCCTGGGGTCACCACCGCTACCACCCGTCAAGTAATT
GGTGGGTTGAGGCGGCACAGAGAAAAGGTTTTAACGCCCGGAAATCAAGGAATCTTCCGCTATAG
CCTTTTAAAGGGCTCACAAGAGTGTTAAGAACCTTTAATTTTCAATTCATTGAAAATTAAAAAAG
GGGGATTGCTTTAATTTAATTTCATTGAAAATTAAAGGTTACTTAGCTATTGCCCATAATTAAGA
TCATCGGACGGGGCCTGGGGCACCACCGTTACCACCCGTCGAGTAATCAATGGGTTGGGGCGCGT
AGTATAGATGAAAGGGTGCCCTAATACACCAGTAGAGCCAGTCTCTCTACCTCCCCTGATCAGTC
GGGGAAGGAATCCCAGGCTTTTAAAGGGCTTCCGCCTTGATTGGATCCTTCAATCGATTATGCCG
GAGCTGATCTCTTCTTCGGGAATGGGCTGAGTCGGGTCTATCGGA
Right flanking sequence: Indices 48095 -- 48594
CCGGGAAATGGGCTGAATGGGGCCTGTCGTAGAATGAGCTGAGTGAGGGCCCGTCGGGGAATGGG
CTGCCGTGAAGCCTGTCGGAGAATGAGCTGAATTGGGTAAATAGGAGTAGGCCCTAACCTAGGCC
CTAACCAAATGTGGATCTAAAACCAGAAAACGGAACTGAGTTCACGGATGAACAGAAGGAACATA
CGTCAATACATCTTGCTGACCCTATCTCACGCAGAGAAGAGAGTGGCCAGTTCGGCATTCGCTGA
GGTGATAGTGGTACAAGTAAGCTCAGGCTTCGACTGTAGGAGCATAGTGGTGAGCAAGGAAGCTC
ACAGTGGGAGGGGCATTACCACTACGGCATCTGGAACAGAGATGCAAGCAAATACACGGTGACTA
AGAAGCTGCGAGCACTCTTCCCTGAGTTCGAGGGGCGCCAATGTAACGTGAGCTTCCACAAGGGG
TGGAATACGAGCTTTTGCAGGTATCTAATGAAAGGTGATGAATCC
Found at i:48150 original size:27 final size:27
Alignment explanation
Indices: 47967--48190 Score: 105
Period size: 26 Copynumber: 8.6 Consensus size: 27
47957 GATCTCTTCT
* * * *
47967 TCGG-GAATGGGCTGAGT-CGGGTCTA
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
*
47992 TCGGAGAATGAGCTGAAG-GA-GCCCTG
1 TCGGAGAATGAGCTG-AGTGAGGGCCTG
* * *
48018 CCGGGGAATGAGCTGGATTGA--GCCTG
1 TCGGAGAATGAGCT-GAGTGAGGGCCTG
* *
48044 TCAGG-GAATGAGCTGAG-G-GGCCCTA
1 TC-GGAGAATGAGCTGAGTGAGGGCCTG
* * * *
48069 CCGGAGAATGGGCTGGGTGA-GACCTG
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
* * *
48095 CCGG-GAAATGGGCTGAATG-GGGCCTG
1 TCGGAG-AATGAGCTGAGTGAGGGCCTG
* *
48121 TCGTAGAATGAGCTGAGTGAGGGCCCG
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
* * * *
48148 TCGGGGAATGGGCTGCCGTGA-AGCCTG
1 TCGGAGAATGAGCTG-AGTGAGGGCCTG
48175 TCGGAGAATGAGCTGA
1 TCGGAGAATGAGCTGA
48191 ATTGGGTAAA
Statistics
Matches: 148, Mismatches: 35, Indels: 31
0.69 0.16 0.14
Matches are distributed among these distances:
24 3 0.02
25 21 0.14
26 77 0.52
27 43 0.29
28 4 0.03
ACGTcount: A:0.21, C:0.19, G:0.42, T:0.18
Consensus pattern (27 bp):
TCGGAGAATGAGCTGAGTGAGGGCCTG
Left flanking sequence: Indices 47467 -- 47966
GCTGCTGGGATGGGCAGAGCTAGGCGCCACAACAAGCAATCAGGTATATAGATAGTTGGCCTGGG
GTCACCACCGCTACCACCCGTCAAGTAATTGGTGGGTTGAGGCGGCACAGAGAAAAGGTTTTAAC
GCCCGGAAATCAAGGAATCTTCCGCTATAGCCTTTTAAAGGGCTCACAAGAGTGTTAAGAACCTT
TAATTTTCAATTCATTGAAAATTAAAAAAGGGGGATTGCTTTAATTTAATTTCATTGAAAATTAA
AGGTTACTTAGCTATTGCCCATAATTAAGATCATCGGACGGGGCCTGGGGCACCACCGTTACCAC
CCGTCGAGTAATCAATGGGTTGGGGCGCGTAGTATAGATGAAAGGGTGCCCTAATACACCAGTAG
AGCCAGTCTCTCTACCTCCCCTGATCAGTCGGGGAAGGAATCCCAGGCTTTTAAAGGGCTTCCGC
CTTGATTGGATCCTTCAATCGATTATGCCGGAGCTGATCTCTTCT
Right flanking sequence: Indices 48191 -- 48690
ATTGGGTAAATAGGAGTAGGCCCTAACCTAGGCCCTAACCAAATGTGGATCTAAAACCAGAAAAC
GGAACTGAGTTCACGGATGAACAGAAGGAACATACGTCAATACATCTTGCTGACCCTATCTCACG
CAGAGAAGAGAGTGGCCAGTTCGGCATTCGCTGAGGTGATAGTGGTACAAGTAAGCTCAGGCTTC
GACTGTAGGAGCATAGTGGTGAGCAAGGAAGCTCACAGTGGGAGGGGCATTACCACTACGGCATC
TGGAACAGAGATGCAAGCAAATACACGGTGACTAAGAAGCTGCGAGCACTCTTCCCTGAGTTCGA
GGGGCGCCAATGTAACGTGAGCTTCCACAAGGGGTGGAATACGAGCTTTTGCAGGTATCTAATGA
AAGGTGATGAATCCCCCTTGGTATGGGGGGAAGAACCCTTGGAAGTGGTACGGGAGCGAGCCAAG
AGTGCAGTGACGAAAAAGAGAATGAATGACTCTTGGAACTTAGTG
Found at i:49797 original size:9 final size:9
Alignment explanation
Indices: 49783--49812 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
49773 ATATGAGCTG
49783 TCCAACTCC
1 TCCAACTCC
49792 TCCAACTCC
1 TCCAACTCC
49801 TCCAACTCC
1 TCCAACTCC
49810 TCC
1 TCC
49813 CTTCGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 49283 -- 49782
GAGGCCTTTAGGAGTCGAGTGTTCTGTCTGAACTTCAATAGCCAACTGAATCATCCCATAACAGC
GGATCGATTGGGTGCAACGCTTCTGGTTGAATGCATTAAACAGCCTTTAAAGGCTGCTCCGGCCA
AACAGCATACCAACACTGAAGCTCCTAGCTGACTTGGAGGCATGCGAGGGGTTAAGTGAAGTGAG
TGAGCGCCTTTTAAAGGCTTTAACTTGTGTCGATCGAGGGAGGCGCTTCAGGTAGCGGCAGCATT
GAGCGATACGGAATTGGAGCAGTGGAAATCCCCAACTTACAAGCTGTTCATGACACCGCAAAACC
CACCGAGGGAGTACCCGACAGGCAGCAAGAAGAACTCAGAGAATTCGCTTGGCTGAATTAAATTG
ATTGCAGACGGGATTATTCAAAGACTTATAGGACGGTGAATGAGCTGTTTCAAGAGACTTACAAA
AGCTCGGAAAATCCCCTAATGCATTTCCCGTCGGAATATGAGCTG
Right flanking sequence: Indices 49813 -- 50312
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGG
CAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTCGTACAGAAAATGA
TTCGCAACGAGTGGTCTGTTCGACAAAGCGAAGTGTCCCTCGCCTAGCCCCGCCTACTAACCTTG
GTAGGCGGGGCGGCGTTGCTGTTTGGGATGAGATGTGAGGTGGCCGACTAGGGGAAGTAGAAGGC
TAGTGGAAAGGTAGAGTTCGAAGCAACCTTTCTCTCTTTAGCCTTCCGCCCGGGAAGAAACTCAA
TCGGAGTTAGAGCCCTTTAAAGTGCGCAAACTTCCTTTCTCTCCCACCTCTCCCAGGCCTGCTAC
ACGACAATCCCTGTAAAGTCTAGGTCTAGGGTCCTCCGACAGGAG
Found at i:50356 original size:35 final size:35
Alignment explanation
Indices: 50310--50569 Score: 459
Period size: 35 Copynumber: 7.5 Consensus size: 35
50300 CCTCCGACAG
* * **
50310 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
* *
50345 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50379 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50414 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50449 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50484 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50519 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50554 GAGGACCACTCCGACC
1 GAGGACCACTCCGACC
50570 CTCTCCCTAT
Statistics
Matches: 221, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
34 33 0.15
35 188 0.85
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 49810 -- 50309
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAG
GGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGA
GGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTCGTACAGAAAA
TGATTCGCAACGAGTGGTCTGTTCGACAAAGCGAAGTGTCCCTCGCCTAGCCCCGCCTACTAACC
TTGGTAGGCGGGGCGGCGTTGCTGTTTGGGATGAGATGTGAGGTGGCCGACTAGGGGAAGTAGAA
GGCTAGTGGAAAGGTAGAGTTCGAAGCAACCTTTCTCTCTTTAGCCTTCCGCCCGGGAAGAAACT
CAATCGGAGTTAGAGCCCTTTAAAGTGCGCAAACTTCCTTTCTCTCCCACCTCTCCCAGGCCTGC
TACACGACAATCCCTGTAAAGTCTAGGTCTAGGGTCCTCCGACAG
Right flanking sequence: Indices 50570 -- 51069
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCC
TCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACC
GGGAGGAGTGGGGGGAGTTGGTTTGCCTCGCCTCCTTCTGTAGCTTCCGCTTCCGTGGAGTAAAA
GAGAAAAGGGCCTTTCGCCCTCCCTTTGCCTCGCCCCCTTCTGTAGCTTTCGTTCTTTCAAAGGC
CTTCTTTTGCTTCCGCTTGCGTAGAAGGAGGGTTTGCTGGGTGGCCCGGCAGGCCACCCGGCGGG
CAGCCCGGCAGGCTGGCCTGGCTCCTCCTCCTAAGGCTGGAGCGT
Found at i:50640 original size:64 final size:64
Alignment explanation
Indices: 50539--50825 Score: 565
Period size: 64 Copynumber: 4.5 Consensus size: 64
50529 CCGACCTACC
*
50539 GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
50603 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
50667 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
50731 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
50795 GGGTCCGAACGAAGTGAGGACAACTCCGACC
1 GGGTCCGAACGAAGTGAGGACAACTCCGACC
50826 TACCGGGAGG
Statistics
Matches: 222, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 222 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (64 bp):
GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
Left flanking sequence: Indices 50039 -- 50538
AGTGTCCCTCGCCTAGCCCCGCCTACTAACCTTGGTAGGCGGGGCGGCGTTGCTGTTTGGGATGA
GATGTGAGGTGGCCGACTAGGGGAAGTAGAAGGCTAGTGGAAAGGTAGAGTTCGAAGCAACCTTT
CTCTCTTTAGCCTTCCGCCCGGGAAGAAACTCAATCGGAGTTAGAGCCCTTTAAAGTGCGCAAAC
TTCCTTTCTCTCCCACCTCTCCCAGGCCTGCTACACGACAATCCCTGTAAAGTCTAGGTCTAGGG
TCCTCCGACAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 50826 -- 51325
TACCGGGAGGAGTGGGGGGAGTTGGTTTGCCTCGCCTCCTTCTGTAGCTTCCGCTTCCGTGGAGT
AAAAGAGAAAAGGGCCTTTCGCCCTCCCTTTGCCTCGCCCCCTTCTGTAGCTTTCGTTCTTTCAA
AGGCCTTCTTTTGCTTCCGCTTGCGTAGAAGGAGGGTTTGCTGGGTGGCCCGGCAGGCCACCCGG
CGGGCAGCCCGGCAGGCTGGCCTGGCTCCTCCTCCTAAGGCTGGAGCGTCCGAGCCTGGAGGAGT
TTGGATGAAATTCAAATCTAAGGCGCTACGCGCTACCCGCGGGGGGTGCGGAGCACCCCCCTGCC
CTGTTGTCTAAGCAAAAATCGATGGTTTGCAAGGTGTCCCGCCAGTGCCAGTGTCACCAACGCGC
TCAGAACGCGCATTTTTCTAATAAAATGACCTCGCGTAACGCCTTACTTTAATGTTAAATTAAAT
TAAATTAAAGTAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
Found at i:51503 original size:9 final size:9
Alignment explanation
Indices: 51489--51526 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
51479 GTTTTTTCTG
51489 CCAACTCCT
1 CCAACTCCT
51498 CCAACTCCT
1 CCAACTCCT
*
51507 CCCACTCCT
1 CCAACTCCT
51516 CCAACTCCT
1 CCAACTCCT
51525 CC
1 CC
51527 CTTCGGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.18, C:0.61, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 50989 -- 51488
GGGTTTGCTGGGTGGCCCGGCAGGCCACCCGGCGGGCAGCCCGGCAGGCTGGCCTGGCTCCTCCT
CCTAAGGCTGGAGCGTCCGAGCCTGGAGGAGTTTGGATGAAATTCAAATCTAAGGCGCTACGCGC
TACCCGCGGGGGGTGCGGAGCACCCCCCTGCCCTGTTGTCTAAGCAAAAATCGATGGTTTGCAAG
GTGTCCCGCCAGTGCCAGTGTCACCAACGCGCTCAGAACGCGCATTTTTCTAATAAAATGACCTC
GCGTAACGCCTTACTTTAATGTTAAATTAAATTAAATTAAAGTAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGTGGCGGGAGGGCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTT
TACGGGATAACTCCGATAGAAGGCACTGTAGTGGCTAGGAGGTTGGGCCCCCGAAGTAGGGGGTG
GGGCGGGTAAAGTACGTGACTTTAAAGCCTAACCTGTTTTTTCTG
Right flanking sequence: Indices 51527 -- 52026
CTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCCAGGAACAAGCCAAAAACAACCTTTAAAGTTT
TTTCTTAGGCCGGCGCCTTTAAACCCCTCTAGTGGTCCCGTAGGACCTGCTGCCGGCCACCACCA
CCCACTTTATGATGCTGCCCCCCACCCGTGGTGCCGGTCACCTTCGCTCTAGTGCTGGGAAAAAG
GCCCAAACAAGGCCAGTGAACGATCGGTGAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGC
CGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTGGGGGGAGTT
GGCTTCATTCTAATGAATTTCAAGGCTCTCGCTATTGAGATAAGGAGATCCATGGTCACGAAGCC
CTAATAAGGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAAT
Found at i:52533 original size:31 final size:32
Alignment explanation
Indices: 52489--52559 Score: 126
Period size: 31 Copynumber: 2.2 Consensus size: 32
52479 CAATGAAATT
52489 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
1 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
*
52521 AAATTCAA-TGTTGTTACTTTAATTTTCAATG
1 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
52552 AAATTAAA
1 AAATTAAA
52560 TTAAAGGGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 30 0.81
32 7 0.19
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (32 bp):
AAATTAAAGTGTTGTTACTTTAATTTTCAATG
Left flanking sequence: Indices 51989 -- 52488
GGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAATGAATCCATCCGGCTGCTTCGGCAGCGA
CGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGGTCAGAAGAGAACAAC
AGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTGATGCAGCCGGGACTG
ATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTACCCGCTCCTTATGAT
CTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAACTCCGTCATGTATTTT
AAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTTAATTTCATTGAAAAT
TAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTACTTTAATCTAATTTC
ATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATT
Right flanking sequence: Indices 52560 -- 53059
TTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAAT
GAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTC
AATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGTAACAGTAAC
TTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATTATCTCACGGC
CGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGATGAAGGGATT
AGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCG
Found at i:52583 original size:37 final size:37
Alignment explanation
Indices: 52537--52744 Score: 304
Period size: 37 Copynumber: 5.8 Consensus size: 37
52527 AATGTTGTTA
*
52537 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
52574 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
52611 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
52642 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
52679 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
52716 CTTTCATTTTCAATGAAATTAAATTAAAG
1 CTTTCATTTTCAATGAAATTAAATTAAAG
52745 TAACAGTAAC
Statistics
Matches: 152, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
31 22 0.14
32 1 0.01
33 1 0.01
34 2 0.01
35 1 0.01
36 1 0.01
37 124 0.82
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (37 bp):
CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Left flanking sequence: Indices 52037 -- 52536
GGCTGCTTCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTT
GGTCAGAAGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGC
TGATGCAGCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAG
TACCCGCTCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCA
ACTCCGTCATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAAT
TTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGT
TACTTTAATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATTAAA
TTAAAGTGTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTA
Right flanking sequence: Indices 52745 -- 53244
TAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATT
ATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGA
TGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAGACGAT
CCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCCTAGGG
CAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCTGAGAG
GAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGA
Found at i:52599 original size:105 final size:105
Alignment explanation
Indices: 52474--52735 Score: 443
Period size: 105 Copynumber: 2.5 Consensus size: 105
52464 AAAACCTTGA
* ****
52474 ATTTTCAATGAAATTAAATTAAAGTGTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTACT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
52539 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
66 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
* *
52579 ATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTCAATGTTGTTACT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
52644 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
66 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
* *
52684 ATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATT
52736 AAATTAAAGT
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 150 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (105 bp):
ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
Left flanking sequence: Indices 51974 -- 52473
ACGAAGCCCTAATAAGGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAATGAATCCATCCGG
CTGCTTCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGG
TCAGAAGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTG
ATGCAGCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTA
CCCGCTCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAAC
TCCGTCATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTT
AATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTA
CTTTAATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGA
Right flanking sequence: Indices 52736 -- 53235
AAATTAAAGTAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTA
AAGTAAATTATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAG
TTGGGTTGATGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGC
GCAGACGATCCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTG
GTCCTAGGGCAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGA
TTCTGAGAGGAGAGAAGACGATCCTGGAGATTATCTTCCCGATCC
Found at i:52616 original size:68 final size:71
Alignment explanation
Indices: 52544--52744 Score: 245
Period size: 68 Copynumber: 2.8 Consensus size: 71
52534 TTACTTTAAT
52544 TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
52609 TCCTTTCA
66 TCC--TCA
* * * * *
52617 TTTTCAATGAAATTCAA-T---GTTG---TTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 -TTTCAATGAAATTAAATTAAAG-GGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAA
52675 AATCCTTTCA
64 AATCC--TCA
52685 TTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAG
1 -TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAG
52745 TAACAGTAAC
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
68 59 0.54
69 1 0.01
70 1 0.01
71 2 0.02
72 1 0.01
73 1 0.01
74 44 0.40
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.37
Consensus pattern (71 bp):
TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
TCCTCA
Left flanking sequence: Indices 52044 -- 52543
TCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGGTCAGA
AGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTGATGCA
GCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTACCCGC
TCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAACTCCGT
CATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTTAATTT
CATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTACTTTA
ATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATTAAATTAAAGT
GTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAAT
Right flanking sequence: Indices 52745 -- 53244
TAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATT
ATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGA
TGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAGACGAT
CCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCCTAGGG
CAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCTGAGAG
GAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGA
Found at i:52976 original size:9 final size:9
Alignment explanation
Indices: 52962--52999 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
52952 AAGGCCGAAG
52962 GGAGGAGTT
1 GGAGGAGTT
*
52971 GGAGGAGTG
1 GGAGGAGTT
52980 GGAGGAGTT
1 GGAGGAGTT
*
52989 GGGGGAGTT
1 GGAGGAGTT
52998 GG
1 GG
53000 GTTGATGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.63, T:0.18
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 52462 -- 52961
AAAAAACCTTGAATTTTCAATGAAATTAAATTAAAGTGTTGTTACTTTAATTTTCAATGAAATTC
AATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAA
TTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATG
AAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCA
TTTTCAATGAAATTAAATTAAAGTAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAAT
TTCATTGAAAATTAAAGTAAATTATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGG
ACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGA
CAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
Right flanking sequence: Indices 53000 -- 53499
GTTGATGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAG
ACGATCCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCC
TAGGGCAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCT
GAGAGGAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGAATAAGACGATTATTT
TCCACGTGCAGGTATGAATCAGACGATTAGACCGTGCAGACGATTATGGAGACGATCAGACGAGG
AGGAGCTTTTGATCGTCTGCTAAAGCACCAGAATCGTCTGCGAACAAATAACCTTTAATTTAATT
TCAATTAAATTAAAGGTTATTTGCCTCTAGCTGGGCTGCTTTGCCTAAGGAAAAGGCCTTTTCAA
GGTAAAGACTGGCTCGCAAAGGGAGAGGAAGTGAGAAAGCGAAGC
Found at i:56385 original size:33 final size:33
Alignment explanation
Indices: 56343--56406 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
56333 CCTCCCGGTA
* *
56343 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGGTCAGACCCGC
* *
56376 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTTGTCCTCACTTCGGTCAGACCC
56407 TTCGGGCAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.09, C:0.33, G:0.30, T:0.28
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 55843 -- 56342
GGGCCGGAGGCCCCCCCCCTCCAATTCTATAGAAGCCCAAGATGGCGGGCGTTCTTAACCCCTAT
ATCTACGTAAGAATTCACGTAAATAGAAAACGCGAAAGGAAAATCACTACTGTCAGTTGAATCGG
GCTCGGACTAGACGCTAGGGTAGGATGAAGGGCCTGCCCACGCTAGCGGCGGAGGGAGGCCGAGG
CTGGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAACTCCTCCAACTCCTCCC
TTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTCCTATCGGA
GGACCCTTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGG
TGGTGGTGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 56407 -- 56906
TTCGGGCAGGGGGCGCTACGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCC
AACTCCCCCCACTCCTCCCTTTGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAG
GCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGG
AGTTGTCCTCCTATCGGAGGACCAACTCCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCC
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
Found at i:56640 original size:9 final size:9
Alignment explanation
Indices: 56626--56670 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
56616 CGGAGGACCA
56626 ACTCCTCCC
1 ACTCCTCCC
*
56635 ACTCCTCCA
1 ACTCCTCCC
*
56644 ACTCCCCCC
1 ACTCCTCCC
56653 ACTCCTCCC
1 ACTCCTCCC
56662 ACTCCTCCC
1 ACTCCTCCC
56671 TTCGGTCGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.13, C:0.67, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 56126 -- 56625
CGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTCCTATCGGAGGACCCTTTGGGCCAGCCCGGGG
GGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGGTGGGGCAGGGGGGGGCG
CCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCCTCCGGTCGGAGTTGCCA
ACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCGCGGTCGGAGTT
GTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCCGGCGGGCAGCGCGTAGC
GCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCGGAGTTGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCA
Right flanking sequence: Indices 56671 -- 57170
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGGCCGTAGCGGGCCTACGGC
CGGCCACTATGCCCCTACTACCCATAGTGGTCCCGTAGGACCGACCCCTCTGGGGGACCCGGGCG
CGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGCGCTTTCCCGGGACCCCCTACCCCATAAGT
GGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCACCATCTCTA
Found at i:56720 original size:35 final size:35
Alignment explanation
Indices: 56674--56966 Score: 509
Period size: 35 Copynumber: 8.4 Consensus size: 35
56664 TCCTCCCTTC
56674 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56709 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56744 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
56779 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56813 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56848 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
56883 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
56917 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56952 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
56967 TCGGACCCTG
Statistics
Matches: 249, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
34 64 0.26
35 185 0.74
ACGTcount: A:0.11, C:0.29, G:0.33, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 56174 -- 56673
TTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGG
TGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCC
TCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCG
GACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCC
GGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCG
GAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCAACT
CCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 56967 -- 57466
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:56855 original size:104 final size:104
Alignment explanation
Indices: 56674--56966 Score: 532
Period size: 104 Copynumber: 2.8 Consensus size: 104
56664 TCCTCCCTTC
* *
56674 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
56739 CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
65 CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56779 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
56844 GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
66 GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
56883 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
** *
56948 TATCGGTCGGAGTGGTCCT
66 GGTAGGTCGGAGTGGTCCT
56967 TCGGACCCTG
Statistics
Matches: 183, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
104 152 0.83
105 31 0.17
ACGTcount: A:0.11, C:0.29, G:0.33, T:0.27
Consensus pattern (104 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 56174 -- 56673
TTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGG
TGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCC
TCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCG
GACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCC
GGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCG
GAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCAACT
CCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 56967 -- 57466
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:56954 original size:139 final size:139
Alignment explanation
Indices: 56668--56966 Score: 564
Period size: 139 Copynumber: 2.2 Consensus size: 139
56658 TCCCACTCCT
56668 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
56733 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
66 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
56798 TCGTTCGGA
131 TCGTTCGGA
56807 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
* *
56872 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTCGGTCGGAGTGGTCCTCACT
66 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
56936 TCGTTCGGA
131 TCGTTCGGA
56945 CCCTATCGGTCGGAGTGGTCCT
1 CCCT-TCGGTCGGAGTGGTCCT
56967 TCGGACCCTG
Statistics
Matches: 157, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
138 33 0.21
139 124 0.79
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (139 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGA
Left flanking sequence: Indices 56168 -- 56667
GGACCCTTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGG
TGGTGGTGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGC
GCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTT
TGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGA
CCAACTCCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 56967 -- 57466
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:59406 original size:34 final size:34
Alignment explanation
Indices: 59339--59429 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
59329 TTGGTCCGAG
* *
59339 GCGAGGACAACTCCGACCG-CGGGTCCGAGCGAA
1 GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
*
59372 GCGAGGACAACTCCAACCGAAGGGTCCGAACGAA
1 GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
*
59406 GTGAGGACAACTCCGACCGAAGGG
1 GCGAGGACAACTCCGACCGAAGGG
59430 AGGAGTTGGA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 18 0.35
34 34 0.65
ACGTcount: A:0.30, C:0.30, G:0.34, T:0.07
Consensus pattern (34 bp):
GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
Left flanking sequence: Indices 58839 -- 59338
CCTGTCGGAGGGCAGGGGGCCTTGCCGGCCCCTTTAAAGGGGGGCGCGTAGCGCCCCCCTGCCCT
TGGGGGCCCCTGCCCGGCGAACAGGAATCCCAGTAAAAAACAGATCTCCCGAAAGAGTCGACGTT
CCGATCTCGATCAAGCGCGGAGCATAAACGAACAAGGCGGAAGCTGCGCTAATAAGGGTTTAATG
CATCGGAGTCTCTTGGAGCACCGAACCCGTGTCTTCATTACGGCACTACTACTACAGGGCCCTCC
GATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAG
GAGTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTTTAAAAGGGGTCCGAACGAACTTT
TAAAAGGGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAG
Right flanking sequence: Indices 59430 -- 59929
AGGAGTTGGAGGAGTTGGGGGACCACAAATATTTATTCCGCCTTTAAAGAGGAGTTGGCCCGAAA
TCCAATCCCTTCACCTCGAATTCACGTACGTAAGGTTCCCTTTAAATCAATTGGCGGAAATTCTG
AAGTGGAAGCGCTCTCATGGGGGGGTACACTATAGTGCGCTACGCGCTTCCCAGGACGGGTTTAA
GGCGCTACGCGCTTCCCGACCCCCTTAGTAGAAGTACAGGGGGAGGGGCTCCGGCTGTCGTTTCA
GCTTCCGCTCTCATATCTCCCGAACTTCAGATCTGCAGACTGCGGGCAAAGAGTATGGGCATGGA
GGGCAGGGAAGATGGGTGCTACCCAACCCCTTTTCTTCCTTTTACCTTGCCACCTCTTCACGATG
TAGCGATCCCCGATTTACGCGAGGTTGTTTGGGTTGAAAGCGGGTTCAGAAAATAGCAACTTTCC
AACCTTTAAAGTTGGAATTCCAAATATTTTCTGAATTCTCTAGGG
Found at i:60400 original size:35 final size:35
Alignment explanation
Indices: 60354--60457 Score: 208
Period size: 35 Copynumber: 3.0 Consensus size: 35
60344 TTAAAAGCTG
60354 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
60389 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
60424 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
60458 GATTAACCGC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 59854 -- 60353
TGAAAGCGGGTTCAGAAAATAGCAACTTTCCAACCTTTAAAGTTGGAATTCCAAATATTTTCTGA
ATTCTCTAGGGAATCAGCCCTTGAGTTCAACCATTTGTTTGGTGACTCGGGAAATTCAGGGGAAT
CGGGTGGATTCCAAAAGAATTGGGTTTAAGGGGAAGCGCTAGGAGCCGCTTAGCCCGGCAAGGGT
ACTACCTACCTGACGGGGTGGGTCAATCAATTATTCGCCTAGCGCTTTAGCTTCCGGGTTTTAGC
CCGCACGAAGGCAGGTCAGCCTTAAGGCTGCCCTTTAAAGGGGGTTTAAAGTAGCGACTTTAAAC
CAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTT
AGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGGCCCTGCCAACTCCT
CCCGGTAGGTCGGAGTTGTCCTCCCGGTAGGCCTTTTAAAAGCTG
Right flanking sequence: Indices 60458 -- 60957
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCACTTTAATTTCATT
GAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGCGCCCCCGCGGGGCCGGCCAGGCCCCCT
GCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCGATAGGACCACTCCG
AATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGACGGCG
CTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCTCACTTCGTTCGGACCCTA
CAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGAATTCTGGAGTGAGGAGGAATTGAGCTCTA
GTCCCTCGAGGAGGGTTCGGGTTATTTTTCTGTTTCCCCCCCATC
Found at i:61194 original size:25 final size:25
Alignment explanation
Indices: 61166--61221 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
61156 CACGATCGAG
*
61166 CGTGAACAAGAC-ACGAGTGAACGAA
1 CGTGAACAAG-CTACGAATGAACGAA
*
61191 CGTGAACAAGCTACGAATGAACGCA
1 CGTGAACAAGCTACGAATGAACGAA
61216 -GTGAAC
1 CGTGAAC
61222 GATTCTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.41, C:0.21, G:0.27, T:0.11
Consensus pattern (25 bp):
CGTGAACAAGCTACGAATGAACGAA
Left flanking sequence: Indices 60666 -- 61165
AGGAGTTGGAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGACGGCGCTCCTTTAAAGGG
CCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTTTAAAGA
ACCTTTAATTTAGTTTCAATTCAATTTAAGGCCTCACTTCGTTCGGACCCTACAGGGCAACTCCG
AATTCCGATAGGGAGGAGTTGGAATTCTGGAGTGAGGAGGAATTGAGCTCTAGTCCCTCGAGGAG
GGTTCGGGTTATTTTTCTGTTTCCCCCCCATCAATTCGCATAGCTGCGCCCCGGTTCCCCTTTCC
TGAACCATGAGAGGATAAGTCCGATCGTGGGGCGAGCGATAGCGAGCCACTTACCCCCGATAGGG
GGTAAGGGGATCCGACAGGATCCACTTACCCCGATAGGGGTAAGGGGCTCTTCTGACTTCTGAGG
TTGGCCATAATTGGCTGATCCATAGAAAGAAGGTTCACGATCGAG
Right flanking sequence: Indices 61222 -- 61721
GATTCTTTAAACGATACAGTGAAACCCACTACACGGTGAAGGGATTCGAACCCGTACTTTAAATA
CTTTAAAGGCCCACCAGACCGCTCTTTCTGGGGGGTGGGATATAGAGTCAGCTTTTGTCGCGGGG
GCCTTAGGCTCCCTAATCCTCCACACTGTGGTTTTATCCCTCCCGGCGCTTTCTTCTCCGATCTG
GCTTTTAAAAGGGCTTACGCTATTTAGTTCTTCCGCTTCGCGGAAGATTTCGATACATACTGGGT
CACCAGTCGTCGCGTGGAATCAAGTAAATAGAATTTGGTTCGTTCTTCCGCTAAGTCGTCCCTTT
CGTCTAGAGGTTAGGACATCGTCTTTTCATGTCGAAGACACGGGTTCGATTCCCGTAGGGGGTAA
AAGGAAGAGAGTTTCCTACCAGTACATAAGACCGGTTCCTCCCTAGAAAAAACCCTCCCCGGTCG
TCGTGGGAGCCTTTAAAGGCAAGTCTTCCGCTTCGCGGGAGCCGG
Found at i:62796 original size:35 final size:35
Alignment explanation
Indices: 62752--62984 Score: 430
Period size: 35 Copynumber: 6.7 Consensus size: 35
62742 CCTCCGATAG
* * **
62752 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62787 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62822 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62857 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62892 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62927 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
62962 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
62985 AGGAGTGGGA
Statistics
Matches: 194, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 194 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 62252 -- 62751
CTCACTGTCCTTTCTTTTGGAACAAAGCGAAAAACTCGATGCAGACCCTATTGGGGGCAGGGAAA
GGAATAGACATCCTCTATTATTGGGCATCCGCTCACGAGATGTACGACGCCCTGCACATCCTAGC
CTTTCGGGCAGTGGTATTGTAGATAACACTAATAGTAGTACCTTGAGCAATGAAAATTGAAAGGA
CATTCTGGAGATTCGTGCCGTTCTAGAGGACTCACTAGATTGGCACCAGTCTTGAAGGGGTGCAC
CTCCCTTTCGTTCGGTTGCGGCCCTCCTTAGGGAGGGGTGGTGTTTGGGGGGGGCGCGCGTGTCA
CTCGATGGGCACCCCCTACCGAGTGTAAGAAGCCGTTGAGTCTTCGACCCCTTAGAAAGGCGTGG
CCAATTCCTTTCTTGGAGTTGTATAGGCAATTTAAAGGCGGGAAAGCCGCAGAGCAGATTCGATG
GACATGGGGAGAGAATGTCCGGCCTATCCAAGGGCCCTCCGATAG
Right flanking sequence: Indices 62985 -- 63484
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCGGCAAGGCC
AACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCCTTTTAAAGCG
TTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGAAGG
GCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGA
GTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAAGCACTTTTTAGTTA
GGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGCCCCCCCTGCCCCTT
TCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGATCACTGCAGCCGGCC
TTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGG
Found at i:62994 original size:9 final size:9
Alignment explanation
Indices: 62982--63035 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
62972 CCGACCTACC
62982 GGGAGGAGT
1 GGGAGGAGT
62991 GGGAGGAGT
1 GGGAGGAGT
*
63000 GGGGGGAGT
1 GGGAGGAGT
63009 GGGAGGAGT
1 GGGAGGAGT
*
63018 GGGGGGAGT
1 GGGAGGAGT
63027 GGGAGGAGT
1 GGGAGGAGT
63036 TGGCCGGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 62482 -- 62981
TAGATTGGCACCAGTCTTGAAGGGGTGCACCTCCCTTTCGTTCGGTTGCGGCCCTCCTTAGGGAG
GGGTGGTGTTTGGGGGGGGCGCGCGTGTCACTCGATGGGCACCCCCTACCGAGTGTAAGAAGCCG
TTGAGTCTTCGACCCCTTAGAAAGGCGTGGCCAATTCCTTTCTTGGAGTTGTATAGGCAATTTAA
AGGCGGGAAAGCCGCAGAGCAGATTCGATGGACATGGGGAGAGAATGTCCGGCCTATCCAAGGGC
CCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 63036 -- 63535
TGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGC
CCTCCGGCAGAAGGGCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAA
GCACTTTTTAGTTAGGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGC
CCCCCCTGCCCCTTTCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGAT
CACTGCAGCCGGCCTTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGGTAGCGC
ATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCT
Found at i:63009 original size:18 final size:18
Alignment explanation
Indices: 62986--63035 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
62976 CCTACCGGGA
62986 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
63004 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
63022 GGAGTGGGAGGAGT
1 GGAGTGGGAGGAGT
63036 TGGCCGGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.70, T:0.12
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 62486 -- 62985
TTGGCACCAGTCTTGAAGGGGTGCACCTCCCTTTCGTTCGGTTGCGGCCCTCCTTAGGGAGGGGT
GGTGTTTGGGGGGGGCGCGCGTGTCACTCGATGGGCACCCCCTACCGAGTGTAAGAAGCCGTTGA
GTCTTCGACCCCTTAGAAAGGCGTGGCCAATTCCTTTCTTGGAGTTGTATAGGCAATTTAAAGGC
GGGAAAGCCGCAGAGCAGATTCGATGGACATGGGGAGAGAATGTCCGGCCTATCCAAGGGCCCTC
CGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGT
CCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
CGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 63036 -- 63535
TGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGC
CCTCCGGCAGAAGGGCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAA
GCACTTTTTAGTTAGGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGC
CCCCCCTGCCCCTTTCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGAT
CACTGCAGCCGGCCTTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGGTAGCGC
ATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCT
Found at i:66068 original size:72 final size:71
Alignment explanation
Indices: 65951--66089 Score: 251
Period size: 72 Copynumber: 1.9 Consensus size: 71
65941 AGCGTTTCCC
*
65951 CTAGTCCCAGTTGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGGTTGATGATTTTCCGACT
1 CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTT-GTTGATGATTTTCCGACT
66016 AACAATA
65 AACAATA
*
66023 CTAGTCCCAGTCGATGATTTTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
1 CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
66088 AC
66 AC
66090 GATAGTTGGT
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 21 0.32
72 44 0.68
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (71 bp):
CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
ACAATA
Left flanking sequence: Indices 65451 -- 65950
TGGAAGTCCCGCGGGTCATCGTTTCTTCAATTGGCACTTTTCTTTCGGAGAAGATGGTCCTACAT
TGGTACCTATTGAAGAACTTTTTAATGAGTGAAGAGAAGGCCTTTAAAGGCTCTCTAAGGAAGGA
ACTGTCTGGCTAAAGAAGGAATTCTGGAAAGGTACTTTAATTTAATTTCATTGAAAATTAAAGCA
TTATACAGAAGGCTGCTGTCGTCTCGATTCCAAGTGGTGCTCCGTAGCGGCCATCGCCATCCCCA
CTAAGACCTCACCTGCCGGGGGCTTGTGCAAAAGAGAAACGTCGGTCACATTCAAACAAACGAAA
AAGAAACCGCTTTAAAGTAAAGTACACACGAAAGAATTCAGTAGATAGAAGACATGCTCTCTTTC
AAGAGCCCGTTCCTTCTCTTCACTCAGGCAAGCTCATCTTGTTCTCATTCATACAGTTCTTCAGG
AGGAAACAAAGAGTTCTCTTTAAAGTAGATGTTCCAGCGTTTCCC
Right flanking sequence: Indices 66090 -- 66589
GATAGTTGGTGCTTGGGTTGGAGGGGAAGGAAGGGCAAAGTGGTTTCTCTTCATCCTTGCAGACG
ATCCCGAAGACCTGGGAAGAGTCCGAAGCAGACGATCCTCCCACGGGGAAGACAATTCCGCCCAC
CCTACGCAGACGATCCCGCCCCGACGCAATGCAGACGATCCCGGCAAATTCAGATAGATAGTTGA
TGATTTTCCATAACCCTCTCTCACTCACTCACTCGGAACCAAAACCCACTCTCACGCGCTCTCAC
TCACCCGGAAGTTAATGATCTTCCTACACCAATTCCGAGAGATAGTTCATGAGCGGGCCTGCGAA
GGCGTTTAAAGGGCTGTTGTATAATCCGAGTTTGATCCGTGGTTCTGGACCTGGACCTTGGGGCT
ACGCGCGGGGCCTGACGTGTGCACCGGAACTGCTTTGAAGGAGCGTACTCCGTGGCTCCACGTGC
TGGCTTCTGACGTTCTGGTTATGGTTCCGGTTCGGAGGCCCATTC
Found at i:67051 original size:19 final size:19
Alignment explanation
Indices: 67027--67064 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67017 GATTTCCGGT
67027 TTAAAGTCATGTAATTTAC
1 TTAAAGTCATGTAATTTAC
67046 TTAAAGTCATGTAATTTAC
1 TTAAAGTCATGTAATTTAC
67065 CCGCCCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (19 bp):
TTAAAGTCATGTAATTTAC
Left flanking sequence: Indices 66527 -- 67026
CTCCGTGGCTCCACGTGCTGGCTTCTGACGTTCTGGTTATGGTTCCGGTTCGGAGGCCCATTCCG
GCGTTCAGACGCCCAGGTTTCTACCGGCCCTAGTTGCGTGGTGCCTCGGGCCGGCCACTTCGGAT
GAGACGGTTCCCTGCCCTACGCTCTCCACGTTGCGTTGCCTAAGGCACCCCCGCTCCGTAATAAC
CGGGTATAGGGGGTGCCTTCGTGTCCCTTGGTTTGACGCTGTTCTGTGTGCATGGAAATCATTAT
ATAGAATGAACCAGTTTAAAGGCCCGATATCGACCTTTAAAGGCTTTTGCTACTGATTCGAATTC
GGGCCTAAAGACTACTTCCATTCCTTTCTCTACGCTGGTGATGAAGCTAACGTGCACTTACTGTT
GGTAGCGCGTTCCGCCATAGCACGCACTAGCCCGTAGCTACAACTTCCTGGTGCCCTTAGCTCCC
ACGGTGATGCTCCGATCGCTGATTATCGCGGAGCAGATTTCCGGT
Right flanking sequence: Indices 67065 -- 67564
CCGCCCACGTACGATCCTTTGCCATACCCACCGTGCCCCTCTTTTACGAGACCGATCCGCAAACG
GAGGAGGCTGAAGCGACTTTCCAGGCCATTTTATCCAACTCCTCCCTCCGGAATTCGGAGTTGCC
CTCCTGCCGGAGGGCGGGTCCGAGGCGAGGACAACTCCGACCGCGGGTCCGAGCGAAGCGAGGAC
AACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACC
ACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAAGACAACAAATGATTCCGAAGG
GTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCCTTTAAAGGAG
CGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTA
Found at i:68245 original size:33 final size:33
Alignment explanation
Indices: 68191--68254 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
68181 ATAGGGAGAG
* *
68191 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
68224 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
68255 TTCGGGCAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 67691 -- 68190
GAGTGTCCTAGGGCGAGTGCATCAAACATCGAGTAGAAATCGAGTGTTGACAGCGCTACGCGCTT
CCCACGTGAAGGGGGCGCGTGGCGCCACAATAGTGGCCTCGAAACCATCTTTGAAGGTACGAAGT
CACTCGAGTTGGTTTCCGGAAAGGGGGGGAGGGCAGGGCCCCCTTGGGGGCTCCTTCAAAGGTGG
CCTAAAGGCCACCCTTAGAAGGCAAGGGCACTATCAGCGTTACAAAGACTTTTTAATTTCATTGA
AAATTAACGAGAACTTTAAAGCGGCTTTCCCTTTTCCCTTTTCTCTGAAGGGGAAGGTATAATGT
GGAAGGCTTAACGCGAGGAACGAACCGAAGAAAGGGATCGTCTGTTTCCAACTCCTCCCTATCGG
AATTCGGAGTTGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 68255 -- 68754
TTCGGGCAGGGGGCGCTACTTTTAACCCCCGGCGGCCAGCCCTAGGGCTGCCCTGGCCCGGCAGA
AGACGATTTTTCCGGAATCGGATTGCGCCTCAGAAGCAGCTGCTGCGGGGCGTGCGAAACGCCCT
GCTCTTGCCTCGTGTTTGGAGAGAGGGCTCAGCTCAATCAGACTCAGCTCGATTGGCCGACTCAG
AAGCATCTACCGAAGCAGCCCTTTTAAAAGGGTCCTACTCAGCAGCTCGAGATACCGCATAGACT
ACGGACTCGGGCCCTACGGGGCCACGTCACTGGGGTAGGGGCCTGGGGGGTGCGGACCCGGGCGG
GTAGCGCTACGCGCTACCCTGGCCCCAGTAGGGGCCTCAAAAGCTTGCGAAGGCTGCCTTAAGGC
ACCACAGTCAGCTCGCTGTAGCGCCTGTTCTTATCCCTTCGTTCCTAGAACCTTGCAGAGGCCCT
TAGCTAGGGAGGCGATACCAGGGCTAGTTGGTATGACTGCCTACC
Found at i:69999 original size:43 final size:43
Alignment explanation
Indices: 69951--70086 Score: 196
Period size: 43 Copynumber: 3.3 Consensus size: 43
69941 GTCCGAAGGA
69951 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
1 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
69994 CAACTCCGAATTCCGATAGGGAGGAGTTGG---TCCGA-AGGA---
1 CAACTCCG-A--CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
70033 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
1 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
70076 CAACTCCGACC
1 CAACTCCGACC
70087 CTCTCCCTAT
Statistics
Matches: 83, Mismatches: 0, Indels: 20
0.81 0.00 0.19
Matches are distributed among these distances:
36 18 0.22
38 1 0.01
39 13 0.16
40 4 0.05
42 4 0.05
43 24 0.29
44 1 0.01
46 18 0.22
ACGTcount: A:0.25, C:0.26, G:0.34, T:0.15
Consensus pattern (43 bp):
CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
Left flanking sequence: Indices 69451 -- 69950
CGAAACGGATCCTTTTTTCTGTATCGAGAAGCAGAGTTAGTGATAAAGAGGACGGGAATTAAGGA
TGCTTTTTGAAAAACTTTCAGAAATTTGTTTTGTAATGTCTTTTCCGAGTTGCGTGATAACCCGG
CTATTCAAAAACGTGCTCGTACGGAACAAGAAGCAAGACAGTACGAGACGAAGTCGGAACTTTAA
AGTCAAGTATTCTACCGGTCTTGACGCCCTATCCTAAAGGCTTAGGCCATAATCCGTAGACCAAT
CCACCCCTAATTAAATTCCGTTCGGCAGTCTTTACTCGCTATAGAGAAATCGTCCTTGTCCTGTA
ACCGGTAGGCTAAGATTCAATTGCCAACCGGTCTTCAATTAATTTTAAAATACATGACTTTAACA
TAAATTAAATTCAATTCCAGTTGCCGGTTACGAAGGCCCATTACTCATGAGCTCTCGCTCAACGG
GAAAGAGCCGTATGAAGGGCCAGGGGCCCCCAAGGGTCCGAAGGA
Right flanking sequence: Indices 70087 -- 70586
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCAACAAATAATTCCGCACGGGAGGAGTTGGCA
GCGCTACGCGCTGCCCTAGGGGGGCCCCCCTGCCCCACTCTGATAGTAGCAAACCCTCCACGCTT
TCCCTCTGCAAAGAGGTCTTTATTGGGCAACAACCTGAATTGGTATATAGATATCGGATTCACCA
CTCCCACTCTAAACGGCAGGGTGGCCTACGGCCACCTTTAAAGGGCAGGGGGGCGAGCTTGCGAG
CCGGTCAGCCTGCCGGGCTGCCCTGCCCAGGAAAACGCGTAGCGTTTTCCTACGGGGGTACTACA
AAGGTCTTCTAACCGGCAAGGCCCCCTGCCCCCTGTTGGGGGGGGGCTGCCCTGCCCTCTGGAGC
AGTCTGAACCCTTTCTCTTCGTAGGCTAGTTCCACTGGTCGGCTG
Found at i:71386 original size:23 final size:24
Alignment explanation
Indices: 71340--71386 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
71330 AGGCACAGGG
71340 CAACTCCGAATTCCGATAGGGAGGC
1 CAACTCCGAATTCC-ATAGGGAGGC
71365 CAACTCCGAATTCC-TAGGGAGG
1 CAACTCCGAATTCCATAGGGAGG
71387 AGTTGGTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (24 bp):
CAACTCCGAATTCCATAGGGAGGC
Left flanking sequence: Indices 70840 -- 71339
GGGGTAAGAAACCATTCTAGAGATAATTGAGTCTTCTCCCAGAACTGGAAGCAACTAACCATTTA
GATTTTCCAACAACTTCTGTGAACAACCGGATCTGCTATCTGACCAAGCGGGTTCCGGCGACTTC
GGTTCTTAGTTAGACATGTTTAATCCAGGGCCAGGGTCCGACCGCGGGTCCGAGCGACTTTAAAG
CGCAACTCCTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGT
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGACAACAAAGAATTCCGCCTTT
AAAGAGGAGTTGCCAGGGTCCGAGCATAGCGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGG
GCGCTACTTTAAACCCCCGGGGGCCGAACCCTGCCAGGCACAGGG
Right flanking sequence: Indices 71387 -- 71886
AGTTGGTCCGACCGACCTACCGGGAGGAGTTGTCCTCCCGGTAGGTCGGGCAGGGGGTTAAGATT
GAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTA
GTTTCAATTCAATTTAAGGCCCGGTTCGCTCGGACCCGCGGTCGGAGTTGCCCTCGCCTCGGACC
AACCCCCCCAACTCCTCCCGGTAGGTCGGACCCTGGATTTGCCGGGAAAGGGGCGTGTTGTCCCC
CTACCATTATCCGACAGTGCGCGGAGCTCGAGACATAGAAAAATT
Found at i:71669 original size:34 final size:34
Alignment explanation
Indices: 71626--71692 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
71616 ATAGGGAGAG
71626 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
71660 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
71693 TTAAAGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.09, C:0.31, G:0.30, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 71126 -- 71625
AACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGG
AGTGGGGGGAGTTGGAGGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGCCAGGGTCCGAGCA
TAGCGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGGCGCTACTTTAAACCCCCGGGGGCCG
AACCCTGCCAGGCACAGGGCAACTCCGAATTCCGATAGGGAGGCCAACTCCGAATTCCTAGGGAG
GAGTTGGTCCGACCGACCTACCGGGAGGAGTTGTCCTCCCGGTAGGTCGGGCAGGGGGTTAAGAT
TGAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGC
TCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 71693 -- 72192
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCCGGTTCGCTCGGACCCGCGGTCGGA
GTTGCCCTCGCCTCGGACCAACCCCCCCAACTCCTCCCGGTAGGTCGGACCCTGGATTTGCCGGG
AAAGGGGCGTGTTGTCCCCCTACCATTATCCGACAGTGCGCGGAGCTCGAGACATAGAAAAATTG
CTATGGATCACCACCCCAATGATTCTCTGGACCCTTACAGTTCAGAAGAGGACTCTGCTAGTTCA
GAGGAAAGGAATACCTCTTCGGAAGAATAAAAAGGAACTTCATGCGGTCGGTCCCGGAGGGCCGC
CATAAGGAAGCGCTACGCGCTTACCTTCCCTTCTTCGGGCTCGAATCCATGGGATAACTCAGAAG
CCAGACTCGGTGCCGACGATAATACAAGGAGTCGGCACCCAGAATAATTCCAGGGAGGTCCTGAA
GATAGTCTGCGCGGTCTGCTAATATCTGTAGTAGAAGGCTCGCAG
Found at i:73068 original size:86 final size:86
Alignment explanation
Indices: 72923--73108 Score: 345
Period size: 86 Copynumber: 2.2 Consensus size: 86
72913 CGACCGATAG
* *
72923 GGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
1 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
72988 CTCCGACCGAAGGGAGGAGTT
66 CTCCGACCGAAGGGAGGAGTT
*
73009 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCA
1 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
73074 CTCCGACCGAAGGGAGGAGTT
66 CTCCGACCGAAGGGAGGAGTT
73095 GGAGGAGTTGGTCC
1 GGAGGAGTTGGTCC
73109 GGAGGACAAC
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 97 1.00
ACGTcount: A:0.26, C:0.23, G:0.38, T:0.14
Consensus pattern (86 bp):
GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCGAAGGGAGGAGTT
Left flanking sequence: Indices 72423 -- 72922
CGCTATAGTAACCACCATGCGCGTTCTATTCTCTTTTACTCCATCCCTGATCGCTTCTTATGAAG
TCGCGCTGGGAGCCAGTGCTTGCTATATAAAGATTGCTCCATGGATTTTCTCGGAGATGTTTGAT
GCTTCTCGGGGCTTCTTTGGCGACCGTAGAGTCACCGGAGTAATTGCCGGATGAATAGATTATCC
GAACGCTGCTGCTGTTGCTTCGCGGCGAGACGGACCCGACTCCCTCTATGGGACCACCACTCCCC
TGGAGCCCCAGAGCATGTCGGGAAACGAGAGGGCGAAGGAGCCTAGCGCTTCCCCTAGGGCGCCC
AGGCGAAGCCCTTTTTTCTCCTAGGGCTGAGCCTAGCCACTCGCTCCCCCCCCAAAAAGGGGAGG
AATAGCGAGGGCGGAGCTTAGCTTACTGAAGTAAGTCCCGGGACGCTACGCGTCCCCGGGTCCCC
ATTGCGGGGCGTTTTAAGGGTCCGAAGGACAACTCCGACCGATAG
Right flanking sequence: Indices 73109 -- 73608
GGAGGACAACTCCGACCGAAGGGAGGAGTTGGTTTTAAGCCCTGCGCCGAGAACTTCAATAATTT
TTCCCGACCGTGTCTTCGAGACACAGGTGAGGCTTAGGATCACGAACGTAAGGTGGAAAAGGCCG
GCTAGCCAAGGGCCCAGGGCCCCCGAAGGGACCTACCGGGTCCGAGGCGAGGACAACTCCGACCG
AAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGAGTTGGAAGACAAC
TCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGA
Found at i:73559 original size:146 final size:146
Alignment explanation
Indices: 73340--73658 Score: 593
Period size: 146 Copynumber: 2.2 Consensus size: 146
73330 TCCGACCGAA
*
73340 GGGAGGAGTTGGGGGAGTTGGAAGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCA
1 GGGAGGAGTGGGGGGAGTT-G--G-CAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCA
73405 CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCAC
62 CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCAC
73470 TCCGACCTACCGGGAGGAGT
127 TCCGACCTACCGGGAGGAGT
73490 GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
1 GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
73555 GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
66 GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
73620 ACCTACCGGGAGGAGT
131 ACCTACCGGGAGGAGT
73636 GGGAGGAGTGGGGGGAGTTGGCA
1 GGGAGGAGTGGGGGGAGTTGGCA
73659 GCGCTACTTT
Statistics
Matches: 168, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
146 148 0.88
147 1 0.01
149 1 0.01
150 18 0.11
ACGTcount: A:0.24, C:0.25, G:0.37, T:0.14
Consensus pattern (146 bp):
GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCTACCGGGAGGAGT
Left flanking sequence: Indices 72840 -- 73339
GAAGTAAGTCCCGGGACGCTACGCGTCCCCGGGTCCCCATTGCGGGGCGTTTTAAGGGTCCGAAG
GACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCGATAGGAGG
ACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGG
AGTTGGTCCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGTTTTAAGCCCTGCGCCGAGAACTT
CAATAATTTTTCCCGACCGTGTCTTCGAGACACAGGTGAGGCTTAGGATCACGAACGTAAGGTGG
AAAAGGCCGGCTAGCCAAGGGCCCAGGGCCCCCGAAGGGACCTACCGGGTCCGAGGCGAGGACAA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 73659 -- 74158
GCGCTACTTTTAACTGCCCGGCAGGGGGGCGCTACGCTATGCCCTTTAAAGCCCCCGGCGCGGTT
GTTCCAGCTACGCCTTCCGCCTACGACGGCGGTCTAACGACACTCTTAGGCTAGGGAGAGGGTGG
TCCGGATGGGTCAGGTAGCGGCGCTTCTTCTTATAGAAGGCGGCCCACTTTTTTCCCCTAGAAGG
GATTCAATGAATTTTCAATGTACTTTTAGCGCTTCAAATTCAATTAATTTTAAATTAAACGCGAC
TTTAATTAATTAAAAGTGCGCGTTTTGGAAATTCTGTGAGCCCCTTATACAGAAGGGGGCACTCG
ACCGAATTTGGACACTCGACTACGGGTCCTTTGGACACGAGACCGGAGGGCACCATTGTGGAAGC
CGGGGAAGCGCTACGCGCTGGAACTAGGGTGCACTTCCCTGCACTTTCTTAGTGACAACCTTAGT
GGCGCTACGCGCTTTCCCGCTTCAGTGGGAAGCGCTACGCGCTCC
Found at i:74459 original size:34 final size:34
Alignment explanation
Indices: 74421--74487 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
74411 CCTCCCGGTA
74421 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
74455 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
74488 TTAAAGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.09, C:0.31, G:0.30, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 73921 -- 74420
TAATTAATTAAAAGTGCGCGTTTTGGAAATTCTGTGAGCCCCTTATACAGAAGGGGGCACTCGAC
CGAATTTGGACACTCGACTACGGGTCCTTTGGACACGAGACCGGAGGGCACCATTGTGGAAGCCG
GGGAAGCGCTACGCGCTGGAACTAGGGTGCACTTCCCTGCACTTTCTTAGTGACAACCTTAGTGG
CGCTACGCGCTTTCCCGCTTCAGTGGGAAGCGCTACGCGCTCCCCACTGAAGTTCCCCCAACTTC
AGACATGGTGGTGGTGGGGCGCCTTAAAAGGCCAGCTTCTTGATGCCCATACCACACTTTTCTCA
CAGATGGTGGTGGTATGGGCATCAAAGGCTAAGCTGGCCCCAGCAAGGGGCAGGGGGTTAAGATT
GAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 74488 -- 74987
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAAGTT
TAAATTCAATTAAATTCAAGGTTCTTTGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTA
TCGGACCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTT
GCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCC
CTTTAAAGCCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGA
GTGGGAGGAGTTGGGTTTAAAGGAGTTGGCCCTCCCCCTCCCGTAGGTCGGGGGAGTGTCCTCCG
GACCCTGGCTGGGGCCAGGGTAGCGCGTAGCGCTACCCGCCCGGG
Found at i:74716 original size:36 final size:38
Alignment explanation
Indices: 74645--74717 Score: 105
Period size: 40 Copynumber: 1.9 Consensus size: 38
74635 AAGGTTCTTT
*
74645 GGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATC
1 GGACCAACTCCTCCCTCTCGG-A-TCGGAGTTGTCCTATC
74685 GGACCAACTCCTCCCT-TCGG-TCGGAGTTGTCCT
1 GGACCAACTCCTCCCTCTCGGATCGGAGTTGTCCT
74718 CACTTCGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 13 0.41
39 4 0.12
40 15 0.47
ACGTcount: A:0.14, C:0.37, G:0.22, T:0.27
Consensus pattern (38 bp):
GGACCAACTCCTCCCTCTCGGATCGGAGTTGTCCTATC
Left flanking sequence: Indices 74145 -- 74644
GCGCTACGCGCTCCCCACTGAAGTTCCCCCAACTTCAGACATGGTGGTGGTGGGGCGCCTTAAAA
GGCCAGCTTCTTGATGCCCATACCACACTTTTCTCACAGATGGTGGTGGTATGGGCATCAAAGGC
TAAGCTGGCCCCAGCAAGGGGCAGGGGGTTAAGATTGAATTTTCAATGAAATTAAATTAAAGGTT
CTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCT
CCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCT
CACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACG
AAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGC
ACTTCAAATACTTAAGTTTAAATTCAATTAAATTCAAGGTTCTTT
Right flanking sequence: Indices 74718 -- 75217
CACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCC
CCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAAAGCCAACTCCGACCTACGGGTCCGAACGA
AGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGGTTTAAAGGAGTTGGCCCTCC
CCCTCCCGTAGGTCGGGGGAGTGTCCTCCGGACCCTGGCTGGGGCCAGGGTAGCGCGTAGCGCTA
CCCGCCCGGGTCCGCACCCCCCAGGCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCT
TCGGTCGGTTGAGTGGCTAAAGCCCCTCCCGGTGGGTCGGGGGAGTGTCCGGAGGACCCGTGCCG
GGCCAGGCAAGCCTTACGGCTTCCCTAATCACTATTGTGCACTCGACTAGGGAGAGGGAGAGGAC
AAAGCCAAAAAAAACGCATAGCGTGAGCACTATGGTGCGCGTAGC
Found at i:75732 original size:33 final size:33
Alignment explanation
Indices: 75686--75749 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
75676 TTGGCCCAAA
* *
75686 GGGTCTGACCGAAGGGAAGACAACTCCGACCGC
1 GGGTCCGAACGAAGGGAAGACAACTCCGACCGC
* * *
75719 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGGGAAGACAACTCCGACC
75750 CTCTCCCTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.09
Consensus pattern (33 bp):
GGGTCCGAACGAAGGGAAGACAACTCCGACCGC
Left flanking sequence: Indices 75186 -- 75685
ACGCATAGCGTGAGCACTATGGTGCGCGTAGCGAACTGAGTTCGGGTGCGCTATAGTTCCACCCT
GCCCAACAACTTCGAAAGGTTAATTTCATTGAAAATTAAAGTAAATTCAATTAAACAGAAGAAGT
CTAAAGTCAATTAATTTTCAATTAATTGAAAATTAATCGAAACGAAACGTGAGGTACGAGCGTGA
AGGCGGGGACTACGCTTCCCGTCTATCGACCCTCGCATATGTGCAGCAAGAGGGCGCATATGCCT
GGACGAGAGGGCCAACGTACAATAGGTACAGCACACACCACTGGCAAGCGCACCTATGTCTCGGC
ATCAATAGAGTCTTCGGTGGAACCGGTGAACCACGCATCCGCCCTTTAAAGCTGGTTAGATGCGT
GGGGCAGAGGGCTCGTAGTACCCGCCACACCAAACCCCTAACTAACGGCGGTACCGTCAGGGTCC
TCCGACAGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCCAAA
Right flanking sequence: Indices 75750 -- 76249
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCAACTCCGACCGAAGGGAGGGGTTGGACCGGGC
CTCAGTGCTTTCTCCTCGGCCGGGCGCTTATCAGCACCAACAACTTATTGAAGGGCGGCGGATAG
GTGGAGGTCAAGGGCGAGCCTTGTTGAGGGCGACAAGGGAGCACGAAAGGCGGTGGGGGGCCTCC
GGCCCCGGGCTGGCCCTTTGGGCCAGCCTCGGCCTTTCGTCACCTCCAGGTGGGGGGCCGGCCTG
GGCGGCCTGCTATCGGGTGTCCCCTTAAGGTGTAGGGTGAGCGGGGGGGCTCGGTCAATTCAATT
GCCTGTCAAAAGAGCACTTTAGAAGGATTGACGGATAAATCAAGAATTCGAACGATCAATTGCGG
GCGGCGTCCCGGAGACCCTAACCGGGCGGCCGCCTACAGCCTGGT
Found at i:79017 original size:33 final size:33
Alignment explanation
Indices: 78975--79038 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
78965 CCTCCCGGTA
*
78975 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
*
79008 GGTCGGAGTTGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCC
79039 TTCGGAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.08, C:0.34, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 78475 -- 78974
TCAATTTCTGGCCCTGCACCGAACATCCAATGGACCATGGACTAATAATAAACGGCCACTGTATT
ATGAGAAGACTACCATGTCCAGGAGACCGCCCCACAAGGTACATCTTGCGCCTATGGGCCGCTAT
AACTATCCAATACACTCGAAACTGGAACACCACTGAATGTAGGGCTCAGGAAAACGCTACGCGTT
TCCCTTTGTTACGGAAGGGGCGCCGGGGGCGCATAGCTAGCCGCCCCCTGCTCCCTTGCAGTGGG
CTGCCAAGCTACAAGCCCTATCTGTGGCGGGATTCTCTAAAAAGCAAAGGCCCTGGCGAATAAAG
ACCAGGGATATGCCCACCTGGAGACTTGGGATCTCAGCAGTGAATGGAAAGGATAATAAGTTCTA
AGTCGGTTCTGCATAGATAATACTCGAACGAGGAGGGAAAGCGCTATTTTCCGGGCCCGGCCCCC
ACTTGCCGGTGGGAACAAATCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 79039 -- 79538
TTCGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCAGGGGGGCGAGCTTGCGAGCCCCCCTTTAAA
GGGGCCGAAGGCCCCCTGCCCTTGGCCGGCAGGTCGAGACGGTTGTAGGCTCCAACCCAGTATTT
ACCAACAAGCTTCTCGCTCCAACGAACGATATGGACCAATCGGCGTAGACTTGTACGAAATATAC
ACGCAAGACTCTAGTGAGACAAGTCACACGGGATGATGACCCCCGTTAAAAGGCATTGACAATGT
AGTTGGTTCCCCCTTTTAAAGCGGTCCGACCGAAGGGTCCGAGCGAAGCGAGGACAACTCCGACC
TACCGGGAGGAGTGGGGGGAGTTGGCAGGTTTAAAGTCGCTGCTTTAAACCCCCCTTTAAAGGGG
CCGAAGGCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAG
GACAACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGGGGAGTT
Found at i:80456 original size:35 final size:35
Alignment explanation
Indices: 80412--80480 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
80402 GCGGTTAATC
80412 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
80447 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
80481 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 79912 -- 80411
AAAAGCCCCCTTTCTCTCTCAGGACGGGCCGGAGCCGGGCAAGTATGGGGCCGGTAGGGGGGCCA
GGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAAGGCACGCGCCCCCTGCCCCATACCCGG
TCCCCTTCTATCTTCGGGGAAAGCGCGTAGCGCTTTACCTAACGGGTAAGCGCGTAGCTAGCTAT
AGTGCCCCTTGCCCAAAAAGGCCCGGCCGTCTGCCCACTGAATTCGTGGGATTGGGTAAAGACTC
CTGGGTACCGGTCCTACGGACTCCTAGCCGGGGTCTTGCGTGCGGGCGGGGATCAGGTCAAGCGG
GTTTTAAGGCGCTTCGGAGTCAGAAAAGGATACTTGAAGGCGCAGCAGTTTAAATTAAATTAAAT
TAAAGTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 80481 -- 80980
CAGCGGCCGGGTCCGAGCGAAGCGAGGACCACTCCGCCGAAGGGAGGAGTTGGAGGACAACTCCG
ACCTACCGGGAGGAGTTGGGCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGG
AAGTTGGGCTTTAGCCTACTCCTTTAAACCCCACCCCCACCCTAGTTGGTGGGGTTTAAAGGAGT
TGGGCCCCCTAAGTAGACTCTTACACAACGGCCTAGCACTATAGTGCCCGGCCGGCAGACTGAGT
GGTTGGATAGCTAGCCGAAAGCACATAAGGGTGGGACAAGACGAGAGCCCAATAAAACGTAAAGC
ATTTCCCTCTCCGAGACTAACAAAACGTGAACCGGGAGCATACATGACTTTAAAGTGAAAGAAGA
ACACAATTTGTGGAACCAGAGAAGGCCGAAGGTGTTGCCGGGCTAGGGAAGCCGTCTTCTTCGCG
GCTTCCGCCTCCGGCACTAATAATGTGGAGGGGACGCTAATAAGC
Found at i:85150 original size:9 final size:9
Alignment explanation
Indices: 85132--85176 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
85122 CCGGAATCCA
*
85132 ACTCCCCCC
1 ACTCCTCCC
85141 ACTCCTCCC
1 ACTCCTCCC
85150 ACTCCTCCC
1 ACTCCTCCC
85159 ACTCCTCCC
1 ACTCCTCCC
85168 ACTCCTCCC
1 ACTCCTCCC
85177 TTCGGTCGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.11, C:0.69, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 84632 -- 85131
TCTTGAGGCATAGAGGTCCCTTCGAGAGGGAAAGGAGGGCGGCACGGGGGGCGGCGTTCCTACCA
ACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACAAGGCAAAGCGAACTCTGAGTGCTGGGCACA
TGCAACAACTCCGAGTGCAGGGCACATACCAATCAAGTATATAGAGAAGAAGACCTTCCTAAGGC
TGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTCGTCTTCTATACACTCGATTGGTGAACCCGC
TCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGCCGGCTTGCACTCAGAGTTGCGTGTGCCCTC
CTGAAAAGTAGGGAACACCGCCCTCTCAAACATCCCTAAAGCTACATTTAAGGAGAGAGGGCGCA
AAACTCCCTACTTTTGATGGGCTGTCAGAAATGTAGAGGTTGGTTAGATCCAGCTAATGGGCGAT
AGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTATCCGGAATCCA
Right flanking sequence: Indices 85177 -- 85676
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTC
GGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATCTG
TTGGGGCTGCTGGGGCGGCTGAATCTAGGGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAAGA
CTATCCGAATGCCGGGAAGGCTAATGCATAAAGACTCTCAGCCTATCATTACCAGGGCCAATATT
AGCAGACCATGAGTCAGACCTAGGCAGCCAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGGCC
GGCAGGAATGAGGTTATGGCATCAAACCTTCTTGCCCTCACTCCC
Found at i:85219 original size:35 final size:35
Alignment explanation
Indices: 85180--85369 Score: 344
Period size: 35 Copynumber: 5.4 Consensus size: 35
85170 TCCTCCCTTC
85180 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
85215 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
85250 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
85285 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
85320 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
*
85355 GGTCGGAGTTGTCCT
1 GGTCGGAGTGGTCCT
85370 TCGGACCAAC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 151 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 84680 -- 85179
GGGCGGCGTTCCTACCAACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACAAGGCAAAGCGAAC
TCTGAGTGCTGGGCACATGCAACAACTCCGAGTGCAGGGCACATACCAATCAAGTATATAGAGAA
GAAGACCTTCCTAAGGCTGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTCGTCTTCTATACAC
TCGATTGGTGAACCCGCTCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGCCGGCTTGCACTCA
GAGTTGCGTGTGCCCTCCTGAAAAGTAGGGAACACCGCCCTCTCAAACATCCCTAAAGCTACATT
TAAGGAGAGAGGGCGCAAAACTCCCTACTTTTGATGGGCTGTCAGAAATGTAGAGGTTGGTTAGA
TCCAGCTAATGGGCGATAGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTATCCGGAATCCAACT
CCCCCCACTCCTCCCACTCCTCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 85370 -- 85869
TCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATC
TGTTGGGGCTGCTGGGGCGGCTGAATCTAGGGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAA
GACTATCCGAATGCCGGGAAGGCTAATGCATAAAGACTCTCAGCCTATCATTACCAGGGCCAATA
TTAGCAGACCATGAGTCAGACCTAGGCAGCCAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGG
CCGGCAGGAATGAGGTTATGGCATCAAACCTTCTTGCCCTCACTCCCGATACCTTGTGAGAGTCC
AGTGCACTCTGCTGTGCTCTCCTTGATATGGAGGACATGGCTCTCAGGCCCTGGTGCTGAGCCTG
CGTAGCTGCTCAGTTCACTCCCTCCCATAGTCCTCAGTCTTATGGTGTGACTGAAGTCATGCACC
CTTAGTCCATTGGCATCGCATCTGCCTGCCTGGGCACAGGCTAGT
Found at i:85411 original size:105 final size:102
Alignment explanation
Indices: 85167--85399 Score: 297
Period size: 105 Copynumber: 2.2 Consensus size: 102
85157 CCACTCCTCC
85167 CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
1 CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
*
85232 CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTT
66 CTTCGTTCGGACCCGATAGGTCGGAGTGGTCCTCAC-T
** ** * *
85270 CGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
1 CACTC-CTCCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
* * *
85335 CACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGAC-
64 CACTTCGTTCGGACCCGATAGGTCGGAGTGGTCC-TC--ACT
85376 CAACTCCTCCCTATCGGTCGGAGT
1 C-ACTCCTCCCT-TCGGTCGGAGT
85400 TGCCCTCCTT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
103 3 0.03
104 3 0.03
105 81 0.76
106 16 0.15
107 2 0.02
108 2 0.02
ACGTcount: A:0.12, C:0.31, G:0.30, T:0.27
Consensus pattern (102 bp):
CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGATAGGTCGGAGTGGTCCTCACT
Left flanking sequence: Indices 84667 -- 85166
AGGGCGGCACGGGGGGCGGCGTTCCTACCAACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACA
AGGCAAAGCGAACTCTGAGTGCTGGGCACATGCAACAACTCCGAGTGCAGGGCACATACCAATCA
AGTATATAGAGAAGAAGACCTTCCTAAGGCTGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTC
GTCTTCTATACACTCGATTGGTGAACCCGCTCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGC
CGGCTTGCACTCAGAGTTGCGTGTGCCCTCCTGAAAAGTAGGGAACACCGCCCTCTCAAACATCC
CTAAAGCTACATTTAAGGAGAGAGGGCGCAAAACTCCCTACTTTTGATGGGCTGTCAGAAATGTA
GAGGTTGGTTAGATCCAGCTAATGGGCGATAGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTAT
CCGGAATCCAACTCCCCCCACTCCTCCCACTCCTCCCACTCCTCC
Right flanking sequence: Indices 85400 -- 85899
TGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATCTGTTGGGGCTGCTGGGGCGGCTGAATCTAG
GGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAAGACTATCCGAATGCCGGGAAGGCTAATGCA
TAAAGACTCTCAGCCTATCATTACCAGGGCCAATATTAGCAGACCATGAGTCAGACCTAGGCAGC
CAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGGCCGGCAGGAATGAGGTTATGGCATCAAACC
TTCTTGCCCTCACTCCCGATACCTTGTGAGAGTCCAGTGCACTCTGCTGTGCTCTCCTTGATATG
GAGGACATGGCTCTCAGGCCCTGGTGCTGAGCCTGCGTAGCTGCTCAGTTCACTCCCTCCCATAG
TCCTCAGTCTTATGGTGTGACTGAAGTCATGCACCCTTAGTCCATTGGCATCGCATCTGCCTGCC
TGGGCACAGGCTAGTCTGGCAGCTCTAGTCACCCTCCCTATCTCA
Found at i:89018 original size:39 final size:39
Alignment explanation
Indices: 88960--89073 Score: 219
Period size: 39 Copynumber: 2.9 Consensus size: 39
88950 ATAACGCTTA
88960 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
*
88999 TAAGTTACTTTAATCTAATTTCATTGAAAATTAAGTAGC
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
89038 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGT
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGT
89074 TAAGTTCTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (39 bp):
TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
Left flanking sequence: Indices 88460 -- 88959
GGAACCGAAGCGAGGATCTCATGCTATCATTGAACGGCTACCGAACCGCCATACTCAGGTAACCG
GTATCTGTTCCAAGTACATCAACACCCCATAGCTACTTAGGGCCGCACCCTCATGGGTCCAGATC
CACGAATCCCGGCGTGATAGTGGCCTAAAGCAATTAATGGCGCAATCAAATAAGGCTCCACTTAA
TGCCGCAACACCGGTTGAGAAAGGGAAGCGAGAGAGGAACTGCAAGGGTCCGGGCGAAGCGAGGA
CAACTCCCCGAGCTTTAAAGGAGTTGGGATGGTATTTTTTCTTTCCTTGTGAGAGTACTGATTGC
ACTGAGTGAGAATAAACCGCACTTAGTGAGAATGCGTACTGATCCCTACTGGGTTCTTGAGCGGT
AGCCCTTCCCGGCAATTGTAGACTCGGATTCCTTCTCCCTAGGGTAGTAGCAGAGCTTTCCTCCA
GTCACTGAGTAGTAGCTGGTATGGCATGTCAGCCCATAACGCTTA
Right flanking sequence: Indices 89074 -- 89573
TAAGTTCTTTAAAGTAAAGTTTTTACTTTAATTTCATTTAATTTAAAATTAAAGTAATAAAAGTT
TTTGAATGAAAAATTTCCTTCTAAAAAAGGCGAGTACTTTCATCGGCCACTTACCCCCGATAGGG
GGTAAGGACTTTTTCTAGTTTTCCGCGGGTTTCAGCGCGTAGCGCCTCAACCTGTGTTCCCCCGC
TACGCGCTGGCCCCTCGCCGATAGGCGGGTAGCATCTGCTTTGAGCCCTCTCCCTTCTTTTTGCT
TTCCCCAAACTGGCCCGCCTCCCGGTAAGGCACTTCTTGCTCGAATATCTGCATCTCAGAGGGAG
TACTAGAGCTAGCACTAGGGGTCAGAAGAGGGCGTGGACGGATACAGAACAGACATGCTTCTTCA
GCCGACATTCCTATCCTTAGTAGGTGCCAGTGCAAGACCGAACGCAAGAATTTGTGCGCATCGAT
TTCGACTTCTTCACTACTGTCATCCATCGTCATCCCCGGCAAGGC
Found at i:90072 original size:34 final size:34
Alignment explanation
Indices: 90025--90095 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
90015 CTCGTGCGCC
*
90025 GGGTCCGAGCGAAGCGAGGACAACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
* *
90059 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
90093 GGG
1 GGG
90096 AGGAGTTGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.28, G:0.37, T:0.07
Consensus pattern (34 bp):
GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
Left flanking sequence: Indices 89525 -- 90024
CGATTTCGACTTCTTCACTACTGTCATCCATCGTCATCCCCGGCAAGGCGGCCCCCTCCTGGGGA
TTATCCCTTGCCGACTGCGGCCCGGCTGGGGATTATCCTCTCGTTGAGTCAATTGCCACAACCTC
CCGGACAATGTAATCCAATTGTTGATGATGTGACCTACTCTCTGCCCATTCCCCCGGTGGACCAC
AAAGCAAAATTGAGGCATTTCACCGCTGCTTCGGTCACTTACCGGGGCTACTCCCCGGGGATTCT
TTCATACCGATGAGCCAGGAATAGAATATTCCCACGTACACTACTAAATGGTTGCCTTTATCGAG
CTTCGAACCTTCCTTATCATACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTC
GCTACTCATGGCTCTGAAACAGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGG
CAATCGATACAGACACGTTTACGCTTAGGCAAATGCTCGTGCGCC
Right flanking sequence: Indices 90096 -- 90595
AGGAGTTGGAGGAGTTGGCTTTAGAACTTCCCCGCTGCTATAGCTATGGGCTGGCCTAACCTTTC
TAAGGTTAAGCTATTAATTTATCATTGGTCAATAATGTCACGGTTCCACTATCGAGTGACTAATG
CAGCTAAGCTCCTTTCTTTCCGTCCTGGTACCTGGCTGAAACCCTCGGAACAACCCAACTCCCCC
CACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCG
GTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGG
CCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTT
GCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
Found at i:90343 original size:34 final size:35
Alignment explanation
Indices: 90305--90375 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 35
90295 CCTCCCGGTA
*
90305 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
90339 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
90374 GG
1 GG
90376 AATTCGGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.10, C:0.31, G:0.30, T:0.30
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 89805 -- 90304
ATAGAATATTCCCACGTACACTACTAAATGGTTGCCTTTATCGAGCTTCGAACCTTCCTTATCAT
ACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTCGCTACTCATGGCTCTGAAAC
AGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGGCAATCGATACAGACACGTTT
ACGCTTAGGCAAATGCTCGTGCGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCTTTAGAACTTCCCCG
CTGCTATAGCTATGGGCTGGCCTAACCTTTCTAAGGTTAAGCTATTAATTTATCATTGGTCAATA
ATGTCACGGTTCCACTATCGAGTGACTAATGCAGCTAAGCTCCTTTCTTTCCGTCCTGGTACCTG
GCTGAAACCCTCGGAACAACCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 90376 -- 90875
AATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGAC
CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
ACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCC
CTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTAT
CGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCG
GACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCG
GTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGA
Found at i:90473 original size:82 final size:82
Alignment explanation
Indices: 90367--91055 Score: 1336
Period size: 82 Copynumber: 8.5 Consensus size: 82
90357 TTCGTTCGGA
90367 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90432 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90449 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90514 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90531 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90596 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90613 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90678 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90695 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90760 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90777 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90842 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90859 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
90924 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
90941 CCCTATCGG---TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
91003 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
91020 CCCTATCGG---TCGGAGTTGCCCTCCTATCGGAGGGCC
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCC
91056 CTTGGGGGCA
Statistics
Matches: 607, Mismatches: 0, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
79 106 0.17
82 501 0.83
ACGTcount: A:0.15, C:0.36, G:0.24, T:0.25
Consensus pattern (82 bp):
CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCAACTCCT
Left flanking sequence: Indices 89867 -- 90366
CATACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTCGCTACTCATGGCTCTGA
AACAGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGGCAATCGATACAGACACG
TTTACGCTTAGGCAAATGCTCGTGCGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCTTTAGAACTTCC
CCGCTGCTATAGCTATGGGCTGGCCTAACCTTTCTAAGGTTAAGCTATTAATTTATCATTGGTCA
ATAATGTCACGGTTCCACTATCGAGTGACTAATGCAGCTAAGCTCCTTTCTTTCCGTCCTGGTAC
CTGGCTGAAACCCTCGGAACAACCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCA
CTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 91056 -- 91555
CTTGGGGGCACTTTTAAAGGCCCACATTTTTCAAACTTTTCGCCCAAAAAGTAAGTTACTTTAAT
TTAATTTAATTTAAAATTAAGTTACTTGTCTTTGTGGTCACACAACCGCTCGCCCCTTAAAATTA
GGCTCTCTGTGCAAAGACGAGCGAAACTATCCCGTTTGCGGTCACGGAGACTTCTGTAGCTACTA
TTCCGCCCTCTTCTAAACAAAAGGAGAAGGGTGCTGCCGGCAGGCCGGCCTTTTTATTAGCTCTA
GCTCCCACACCGGCAGAGCTGCGACCGGACCAACCGACCATAAGACCTTCTCCAACCCAGCCACG
CACGTATGACCCAAGATTCAGACCGAAAACAGGTTTGTGGTCACACAACACACACACACGTACCC
CCACGCGCCCCCTCAAGAAGGAGGACCACACAGCGCCACAGTTCGGAAGGGTTCTGCCAGCAGGG
AGAATAAGAGCCGCCCGACCACCTAGTTCCCAGACGACCTACGGG
Found at i:91005 original size:22 final size:22
Alignment explanation
Indices: 90937--91005 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
90927 TCGGACCAAC
90937 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
* ** *****
90959 CCCT-CCTATCGGAGGGCCAAC
1 TCCTCCCTATCGGTCGGAGTTG
90980 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
91002 TCCT
1 TCCT
91006 TCGGACCAAC
Statistics
Matches: 30, Mismatches: 16, Indels: 2
0.62 0.33 0.04
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.12, C:0.36, G:0.25, T:0.28
Consensus pattern (22 bp):
TCCTCCCTATCGGTCGGAGTTG
Left flanking sequence: Indices 90437 -- 90936
GGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATC
GGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGG
GCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGT
TGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCC
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGG
AGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAAC
Right flanking sequence: Indices 91006 -- 91505
TCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTTGGGGGCACTTTT
AAAGGCCCACATTTTTCAAACTTTTCGCCCAAAAAGTAAGTTACTTTAATTTAATTTAATTTAAA
ATTAAGTTACTTGTCTTTGTGGTCACACAACCGCTCGCCCCTTAAAATTAGGCTCTCTGTGCAAA
GACGAGCGAAACTATCCCGTTTGCGGTCACGGAGACTTCTGTAGCTACTATTCCGCCCTCTTCTA
AACAAAAGGAGAAGGGTGCTGCCGGCAGGCCGGCCTTTTTATTAGCTCTAGCTCCCACACCGGCA
GAGCTGCGACCGGACCAACCGACCATAAGACCTTCTCCAACCCAGCCACGCACGTATGACCCAAG
ATTCAGACCGAAAACAGGTTTGTGGTCACACAACACACACACACGTACCCCCACGCGCCCCCTCA
AGAAGGAGGACCACACAGCGCCACAGTTCGGAAGGGTTCTGCCAG
Found at i:92750 original size:44 final size:44
Alignment explanation
Indices: 92711--92849 Score: 278
Period size: 44 Copynumber: 3.2 Consensus size: 44
92701 ATTAAAGCAA
92711 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
92755 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
92799 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
92843 CTTTGAA
1 CTTTGAA
92850 AAGGTTGCCA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (44 bp):
CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
Left flanking sequence: Indices 92211 -- 92710
ATCTTTTCTAATATGGGCGCTAAGGTAAAGTTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
CTTTCGCATTAGAGCAAACACCCTTGAATATCGACACAGAATAGATAACTCAGTGAACCCATGTA
CTCGACCAATTCGCGGAAATACCTTCTCTTACGTCTCTTCTACGCTTTAGCTTCAACTCCTGTCC
TATCCGATGAAACTATCATCGAAAGACTTACCAGCGCCTTTAAATGTCGGCACTTACCAGCGGTG
GAAGAAGGTGATTTTATTCTGCAAAGGATTGGTGTCTGGAATACTAGTGCAAGCAAACATAGTTA
TCGCAGAATTTTGCAGAATATATTTCCCGAGTTCGGGGGAGCGGCTCTTCAAGTGGTCTCCCGCA
AGAGTTGGAATTCAGTATCTAAGCTTCTAATGACCAAAGGTGCAGTTTTCGTTGGGGAAGACGGT
GCCGGTAAAGAACCTTTATTTTAATTTAATTTAGAATTAAAGCAA
Right flanking sequence: Indices 92850 -- 93349
AAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGCAGGTTCAAAGAACCT
TTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCGCAGTGGATTCATCAG
TAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAACTTGGAGATTCAAAGG
CTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGCTCTGCTCAAAGTGGG
GGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGT
CCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGG
Found at i:93200 original size:35 final size:35
Alignment explanation
Indices: 93143--93331 Score: 342
Period size: 35 Copynumber: 5.4 Consensus size: 35
93133 AGGGTCCTAC
* * **
93143 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
93178 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
93213 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
93248 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
93283 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
93318 GGACCACTCCGACC
1 GGACCACTCCGACC
93332 GAAGGGAGGA
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 150 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 92643 -- 93142
CAGTTTTCGTTGGGGAAGACGGTGCCGGTAAAGAACCTTTATTTTAATTTAATTTAGAATTAAAG
CAACTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTTCTTTGAAGGCTGCTTTAA
TTCTAAATTAAATTAAATTAAAGGTTCTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAA
AGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGCAGG
TTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCGCAG
TGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAACTTG
GAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGCTCT
GCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTAC
Right flanking sequence: Indices 93332 -- 93831
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGGAGTGGGAGGAGTTGGTCCTACGGACAAC
TCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAGAACCTTTCATTTTCAA
TGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTAAATTAAAGTAACCGCT
TTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGGAACGGGAAGAAGCGCA
GTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTGCCCTAGCTAATAATCT
TGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCTTTTTTTCTTGAAAAGT
GTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGTAAAGTTGCCGGAAACC
TAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGA
Found at i:93347 original size:9 final size:9
Alignment explanation
Indices: 93335--93380 Score: 74
Period size: 9 Copynumber: 5.0 Consensus size: 9
93325 TCCGACCGAA
93335 GGGAGGAGT
1 GGGAGGAGT
93344 GGGAGGAGT
1 GGGAGGAGT
93353 GGGAGGAGT
1 GGGAGGAGT
*
93362 GGGGGGGAGT
1 -GGGAGGAGT
93372 GGGAGGAGT
1 GGGAGGAGT
93381 TGGTCCTACG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 26 0.76
10 8 0.24
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 92835 -- 93334
TAAAGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGC
AGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCG
CAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAAC
TTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGC
TCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 93381 -- 93880
TGGTCCTACGGACAACTCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAG
AACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTA
AATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGG
AACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTG
CCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCT
TTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGT
AAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAG
GTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCG
Found at i:93372 original size:19 final size:18
Alignment explanation
Indices: 93335--93380 Score: 74
Period size: 19 Copynumber: 2.5 Consensus size: 18
93325 TCCGACCGAA
93335 GGGAGGAGTGGGAGGAGT
1 GGGAGGAGTGGGAGGAGT
*
93353 GGGAGGAGTGGGGGGGAGT
1 GGGAGGAGT-GGGAGGAGT
93372 GGGAGGAGT
1 GGGAGGAGT
93381 TGGTCCTACG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.11
Consensus pattern (18 bp):
GGGAGGAGTGGGAGGAGT
Left flanking sequence: Indices 92835 -- 93334
TAAAGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGC
AGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCG
CAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAAC
TTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGC
TCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 93381 -- 93880
TGGTCCTACGGACAACTCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAG
AACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTA
AATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGG
AACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTG
CCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCT
TTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGT
AAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAG
GTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCG
Found at i:93440 original size:37 final size:36
Alignment explanation
Indices: 93372--93441 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
93362 GGGGGGGAGT
93372 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
1 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
93408 GGGAGGAGTTGGTCCGATA-GGACAACTCCGACCG
1 GGGAGGAGTTGGTCC--TACGGACAACTCCGACCG
93442 TAAGAACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
36 15 0.47
37 15 0.47
38 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (36 bp):
GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
Left flanking sequence: Indices 92872 -- 93371
AACGAGGGTATAAAAACTTTCCGGAGGCAGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAAT
TAAAGCAACCCTTTTAAAGGCGCTCCCGCAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAG
GCTCACGGCTCTGCTGGAAGAAAAAAACTTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGA
AGGACTTGGAAATAGCTAGAATAGGGGCTCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTG
CAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGGAGT
Right flanking sequence: Indices 93442 -- 93941
TAAGAACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAA
ATTAAATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAG
AAGGAACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGC
TTTGCCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAG
CCCTTTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGA
AAGTAAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGA
ACAGGTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCGCTACCCGCCCGGGTCC
GCACCCCCCAGGCCCCTTATTAGAGGTTGATTGGTATTACAGCTT
Found at i:94273 original size:35 final size:35
Alignment explanation
Indices: 94216--94305 Score: 137
Period size: 35 Copynumber: 2.6 Consensus size: 35
94206 AGGGTCCTAC
* *
94216 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
* *
94251 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
94286 GGACCACTCCGACCGA-AGGG
1 GGACCACTCCGACCGACAGGG
94306 AGGAGTGGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 3 0.06
35 46 0.94
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.10
Consensus pattern (35 bp):
GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 93716 -- 94215
AAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGTAAAGTTGCCG
GAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAGGTAGTTGAAA
AGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCC
CCTTATTAGAGGTTGATTGGTATTACAGCTTTTTAAAAGGCCGCTACACAAAATGTTGAAAGAGT
TGAGCGCTTTTAAAAGGCGTAACTATCGTAGAGTCGGGAAGAATGATCACTATGTTGCTGCGCAC
TCCCGAAGAAAATGCTAGGAGTTCGAAAATGAGGAGGGAGCATGGAGCCATTGAGACTGTGGTTG
ATGGCATCTACGAAGTAGATTGGAGTCAAAAGCTGAGAAACATCCGGTAGGGTGGCCACAAGAAC
TGTACTTCGGCTGCTTCCTATCCTCATTCGTCCCCAGGGTCCTAC
Right flanking sequence: Indices 94306 -- 94805
AGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTC
CGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGTTGCTCCGAAAGAGCAATCGAG
AGGGAGGTGCGGGCCTGGGGCTCCGGGGTAGTAACTTCGGAGGGTTTTGACGGAAAGTTTTCTCT
AGAATTCTGCTGTAGGTGGGGGAGACGCTTAGAGGGGAAAACGTCGTTAGAGCCCCTGTTTTAGG
CGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCGGCTTATCAATTG
GGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAGAAATCTCGAGTG
TTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGC
Found at i:94315 original size:9 final size:9
Alignment explanation
Indices: 94303--94365 Score: 108
Period size: 9 Copynumber: 7.0 Consensus size: 9
94293 TCCGACCGAA
94303 GGGAGGAGT
1 GGGAGGAGT
94312 GGGAGGAGT
1 GGGAGGAGT
94321 GGGAGGAGT
1 GGGAGGAGT
*
94330 GGGGGGAGT
1 GGGAGGAGT
94339 GGGAGGAGT
1 GGGAGGAGT
*
94348 GGGGGGAGT
1 GGGAGGAGT
94357 GGGAGGAGT
1 GGGAGGAGT
94366 TGGTCCGCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 93803 -- 94302
GTGGGATTTGCTTGAGATCCGGAAACAGAACAGGTAGTTGAAAAGAAAGAATGGGGCCTTTAAAA
GTAGCGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTTATTAGAGGTTGATTGGTA
TTACAGCTTTTTAAAAGGCCGCTACACAAAATGTTGAAAGAGTTGAGCGCTTTTAAAAGGCGTAA
CTATCGTAGAGTCGGGAAGAATGATCACTATGTTGCTGCGCACTCCCGAAGAAAATGCTAGGAGT
TCGAAAATGAGGAGGGAGCATGGAGCCATTGAGACTGTGGTTGATGGCATCTACGAAGTAGATTG
GAGTCAAAAGCTGAGAAACATCCGGTAGGGTGGCCACAAGAACTGTACTTCGGCTGCTTCCTATC
CTCATTCGTCCCCAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 94366 -- 94865
TGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGTTGCTCCGAAAGAGCAA
TCGAGAGGGAGGTGCGGGCCTGGGGCTCCGGGGTAGTAACTTCGGAGGGTTTTGACGGAAAGTTT
TCTCTAGAATTCTGCTGTAGGTGGGGGAGACGCTTAGAGGGGAAAACGTCGTTAGAGCCCCTGTT
TTAGGCGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCGGCTTATC
AATTGGGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAGAAATCTC
GAGTGTTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGCCCCACCCGGGCAGGA
TTCAGTGACAGCGTATGGGCACCCTGCGTAGCTCTTGCTTCCTCC
Found at i:95208 original size:43 final size:40
Alignment explanation
Indices: 95119--95235 Score: 168
Period size: 43 Copynumber: 2.9 Consensus size: 40
95109 ATTAGCCTAA
*
95119 GGTTACTTTAATTTAATTTCATTGAAAATTAAA-G--TGG
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTTAG
95156 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTACTTAG
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGG-T--TTAG
*
95199 GTTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
95236 GGGCGACCTA
Statistics
Matches: 72, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
37 33 0.46
38 1 0.01
40 1 0.01
42 1 0.01
43 36 0.50
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (40 bp):
GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTTAG
Left flanking sequence: Indices 94619 -- 95118
CCCTGTTTTAGGCGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCG
GCTTATCAATTGGGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAG
AAATCTCGAGTGTTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGCCCCACCCG
GGCAGGATTCAGTGACAGCGTATGGGCACCCTGCGTAGCTCTTGCTTCCTCCAGCTACGCTCCCA
ATGAGTGGCCTGCCTTTGACCTTTCTAGGTCGCGTAGCTGCCTTTCGTCACACACATTGTCCCGC
TTCCGACACTTACTAATCTGCGACTTTTACTAATCTGCCGACAGATAGACGACTTTTACTAATGT
GCCTGATCTGCCGTGACTTAGCGCCCATATTAGCCAAGTAGCGCCCTATCTTAGCGGATTAGCCC
TTTTAAAAGGGCGACCTACCTCATTCTGTTGTTTTATTAGCCTAA
Right flanking sequence: Indices 95236 -- 95735
GGGCGACCTACCTTAAATTCAATGAATTTTCAATTAATTGAAAATTAGTGGAATTCCCGATTCTT
TACTTTAGCGGCCGAATCAGCCGAATAAGCCGATGTCGAATCAGCTGCCGGAATCCATGCCTTAA
AAGGGCTCTAGCAGGCCTCTCCTACGGCATTGAGAGAAGAGGGATAGCGGTGAGGACCAGTCCTT
GAGTCAGTATGACCTCTGGCTCAAGGACTGGCCCCAGCCCCACCATCCATAAAGTTGGGTGGTGA
GCGCTACGCGCCACTTAGTGGGTGGGGGACCTTTAAAGTGCTCTCTTTCTCCCCTACTAGAGCGG
GTTGTTTCGGGGGGAAGGGCGGGGCCGAAACGCGCTGCCCTCAACCTCCCAAAGGTCGGTTGAGT
GTCCTTTGACCGCCCTACCCTCGTCATCGGCTGACTCAGCCACTATGCGGACTCAGCAACGGCTG
ATTCGGCCACGTAGCGGGCTCGGCATCGGACTCGACAACGGCTGC
Found at i:95740 original size:18 final size:19
Alignment explanation
Indices: 95719--95756 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
95709 CTCGGCATCG
*
95719 GACTCGACA-ACGGCTGCA
1 GACTCGACATACGGCAGCA
95737 GACTCGACATACGGCAGCA
1 GACTCGACATACGGCAGCA
95756 G
1 G
95757 CGGCTACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.32, G:0.29, T:0.11
Consensus pattern (19 bp):
GACTCGACATACGGCAGCA
Left flanking sequence: Indices 95219 -- 95718
ATTGAAAATTAAAGGTTGGGCGACCTACCTTAAATTCAATGAATTTTCAATTAATTGAAAATTAG
TGGAATTCCCGATTCTTTACTTTAGCGGCCGAATCAGCCGAATAAGCCGATGTCGAATCAGCTGC
CGGAATCCATGCCTTAAAAGGGCTCTAGCAGGCCTCTCCTACGGCATTGAGAGAAGAGGGATAGC
GGTGAGGACCAGTCCTTGAGTCAGTATGACCTCTGGCTCAAGGACTGGCCCCAGCCCCACCATCC
ATAAAGTTGGGTGGTGAGCGCTACGCGCCACTTAGTGGGTGGGGGACCTTTAAAGTGCTCTCTTT
CTCCCCTACTAGAGCGGGTTGTTTCGGGGGGAAGGGCGGGGCCGAAACGCGCTGCCCTCAACCTC
CCAAAGGTCGGTTGAGTGTCCTTTGACCGCCCTACCCTCGTCATCGGCTGACTCAGCCACTATGC
GGACTCAGCAACGGCTGATTCGGCCACGTAGCGGGCTCGGCATCG
Right flanking sequence: Indices 95757 -- 96256
CGGCTACTTCGATTTGGAGTCTGGAGGTGGGGGCGGCACTCGCACAGAGAATGCGCTAAGCGGCG
GGGCCGGGCTACGGGGAGGATGCATAAGCCCGCCCCCGCTATCCCCGCCGAAGGGGAAGGGCTAA
GCTTCTACATACCTGATTTCGCGATCTCACCATTCGGAGCCCTTCCCAGTTTCAGTTTCTCCAGT
TCGCTACGCGTTTCCCTTTCTTTAGATGAGTATTTTCCGACCCTTCCTAATGCTCTCTCTATCGT
TTGATTGTCGTGAGGCTAAAGGGACCGGTATAGGGGATTGATGAAGTTGTATAATAAGCTCAAGT
TCTCCAGGCCCTTCCTAGACCTTATATGACACCTAATAATAACCTCTCAATGTACTATAAGGTCC
TCTTAGTCAGGGGCGGGCTTGATCCAAAAGATTTCCGGATTCTCCGAGGACCGGATCTTTGCAGC
CTAGAATCCGTAACAAAAAACGGGATTCTGAGAGAGAGAGAGGTG
Found at i:96806 original size:33 final size:33
Alignment explanation
Indices: 96764--96826 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
96754 GCCTTTTTAA
96764 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
1 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
96797 AAGGGTCCGAGCGAAGCGAGGACAACTCCG
1 AAGGGTCCGAGCGAAGCGAGGACAACTCCG
96827 ACCCTCTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.37, T:0.06
Consensus pattern (33 bp):
AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
Left flanking sequence: Indices 96264 -- 96763
TTCCGGCCGGATTCTCCGGTAATATAGGAGTTTCAAACCTTCGCCCCAGCAGCAGAAGCAGCAGT
AGCCCAAGTAGTTCCAGTTCCAGTTCCAGTCCCAGTTTCAGCAGTCCCAGCAGCCGTTGCCCCAG
GAGCAGTTGAAGGGGCAGTTGAACGCGAATCAGTTTCAATTGAATCAATTGACTCAGTCGCGGAC
CTTTAAAGGCTGACTCAGTAGCCCTTTCGGATTACTAGGGAAAGGGAAAGGTGGGAAGGTTCGAG
AATTCTGGGGGAGTGTTTAATTGAAAATTAAAGTAATAAGATTACTTTAATTTAATTTAAGACAA
TTTTGCTGCTTTTCTGGCCTAACGCGCTTCTAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTA
AAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTTTTTAA
Right flanking sequence: Indices 96827 -- 97326
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATTTGAATTCCGGAAATTCAATGAATTTC
AATTAATTTTAAAATACATGACTTTAAAGAAAGAAAGAGTTGGAACGGCTTTATCGCTCCTTCCT
CTCAACAACTGCTTCATCGGCAACTTAGGCTACGGCTACGGCAACAGCGGAAACAGCTTATTGCC
TCTTCTTCCTTTCTAGGAAAGCTTCCCCTTCCTGGCCTTCTCCTTCGCTACGCGCCTCTCCTCCT
TCCCTTTCGCTACGTGTCTCTCTTCCTTCTTCTTCGCTACGCGCCTCTTTTCGCCTTTGCTCCTC
TTTCGCTCCTACCCTTAGCCAGTTCCCTTTGCGGGCGCCAGCCTCGAATGGTCTTTCTCTGAAGA
AAAAAGGCTAACTGAGCGAGGCGTAGCACCTGTTTGACCATTCCG
Found at i:97152 original size:27 final size:27
Alignment explanation
Indices: 97122--97199 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
97112 CCCTTCCTGG
97122 CCTTCTCCTTCGCTACGCGCCTCTCCT
1 CCTTCTCCTTCGCTACGCGCCTCTCCT
* * *
97149 CCTTC-CCTTTCGCTACGTGTCTCTCTT
1 CCTTCTCC-TTCGCTACGCGCCTCTCCT
*
97176 CCTTCTTCTTCGCTACGCGCCTCT
1 CCTTCTCCTTCGCTACGCGCCTCT
97200 TTTCGCCTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.04, C:0.46, G:0.12, T:0.38
Consensus pattern (27 bp):
CCTTCTCCTTCGCTACGCGCCTCTCCT
Left flanking sequence: Indices 96622 -- 97121
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCG
CCGTCGCGAAAACCAGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGC
CGGCCTTTTTAAAAGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAGCGAAGCGAG
GACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATTTGAATTCCGGAAATTC
AATGAATTTCAATTAATTTTAAAATACATGACTTTAAAGAAAGAAAGAGTTGGAACGGCTTTATC
GCTCCTTCCTCTCAACAACTGCTTCATCGGCAACTTAGGCTACGGCTACGGCAACAGCGGAAACA
GCTTATTGCCTCTTCTTCCTTTCTAGGAAAGCTTCCCCTTCCTGG
Right flanking sequence: Indices 97200 -- 97699
TTTCGCCTTTGCTCCTCTTTCGCTCCTACCCTTAGCCAGTTCCCTTTGCGGGCGCCAGCCTCGAA
TGGTCTTTCTCTGAAGAAAAAAGGCTAACTGAGCGAGGCGTAGCACCTGTTTGACCATTCCGCAG
TGCAAGTGGCCCAGCAAAGCTCAGAGCGCGTAGAATGCCGTTAGTTATGCATCCGCCGTTAGTTA
TGCATGTTCCGCAATCTATTCGGAAAAGAGGGGGCTGAAGAGGAAGCGCATGGCGGAAGAGAAGA
AGAGGCTAAGCTGTAGTCGAGGCGAAGAGGAAGAAGCGCGCAGTCGTGGCCGGGAGGAAGAGGCT
TCTTTCCGAAAGGATTCGGCGCGTGAATAGGGAGAGGCGCGTAGCAGAGAAGAAGAGGCGATATT
TCGTTTCCGCGCAGTCATTATGAGAGGAACGAAAGAAAGCATCATCGCGTTGTTGAATCCTTGAT
CATTACAGGAACGAAAGAGAGCATCGTCGCCCGGGAAGGAACAGA
Found at i:98975 original size:46 final size:46
Alignment explanation
Indices: 98908--99045 Score: 276
Period size: 46 Copynumber: 3.0 Consensus size: 46
98898 TCTAGGTCTA
98908 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
98954 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
99000 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
99046 TGGTTAAGGC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.24, C:0.26, G:0.37, T:0.13
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 98408 -- 98907
ACCACACCGGACTACCCATTCCCATTATTATGCTATTCAAAATATCATACCAATACGTGTTTTTA
AGTCCCGATCGATACTCGCGGAGTTGATTATCCCTCTCGAGAATGAAGATTTGAAGTAGTTTATA
ATTCATCAAGTATTTAGTACAACTCATGCCTTCGTGTATAGACCGGTGTAGACGAAACCACTTCC
GCCAGTTCGGTAGTAAGTCTATTTCCATCGGCCGGCTGGTGGGAGCGGGAAGTCTGGGATATGTT
TGGTGTTTCTTCCTCCAATCATCCCGATTCACGCCGTACATCAACAGACTATGGGTTTGAGGGTC
ATCCATTACGAAAAGACTTTCCTTTGAGTGGATATGTGGAAGTACGTTATGATGATTCAGAAAAA
CGTGTGGTTTCTGAACCGATGGAGATGACTCAAGAATTTCGTTCTTTCGATTTTTCTAGTCCTTG
GGAACCAATGCCGCGTAGTGACAATCCCTGTAAAGTCTAGGTCTA
Right flanking sequence: Indices 99046 -- 99545
TGGTTAAGGCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGT
GGGGGCATCTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTT
CTGCTTGCTCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGC
TACTGGTTAGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCC
GGGCGCGTTTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTC
TCCCTACCGAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATG
TCCCCAATTGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGAGAGAGCGAGTCC
GCCTGGGAGGAGAGTGAGTCCGCCTGGGTGAGAGTGAGTCCGCCT
Found at i:99535 original size:20 final size:21
Alignment explanation
Indices: 99489--99546 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
99479 TTGCCGGTGA
*
99489 GAGAGCGAGTCCGCCTGGGAG
1 GAGAGTGAGTCCGCCTGGGAG
*
99510 GAGAGTGAGTCCGCCTGGG-T
1 GAGAGTGAGTCCGCCTGGGAG
99530 GAGAGTGAGTCCGCCTG
1 GAGAGTGAGTCCGCCTG
99547 AAAAGGCGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (21 bp):
GAGAGTGAGTCCGCCTGGGAG
Left flanking sequence: Indices 98989 -- 99488
GAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGTTAAG
GCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCAT
CTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGC
TCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTT
AGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGT
TTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTCTCCCTACC
GAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATGTCCCCAAT
TGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGA
Right flanking sequence: Indices 99547 -- 100046
AAAAGGCGTCAACACCGGCGATTCAACTTCATTCGCGCTCCGAAGGGCCGATTGCCGCACCTTTT
AAAGGCCTATCGTCAATGGAAACATGGCCTGTTTCAGGTGGCAGCCTCCCTTCGCCCCTTCTCGT
AGCATCCGCAAACCTTTGCTCTACCTTCCCGGCAAGCGGGAGCAGCAATTCAAGGGAAAGTGGAA
GCAGCGATTGGTGGGTCCTTTCTGTTCGGTAAAAGCTATTTGGTTTCCCGGCTTTGCGGAAGGCA
AAGATTCCTTCCTTTGCGGAAGCTGCGACCTGCTTTGTGGGGAAGCATTTAAGTGCCGCTCCTTC
GCATCTGCAGAATTTGCTCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACTTTAAAGGGCCCACCTCCCCTTGAAGGGAA
AGTAAGACATGAGTGCCGCCTAGTCGCGATATCCTCCCCGGGGGC
Found at i:102270 original size:43 final size:41
Alignment explanation
Indices: 102176--102276 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 41
102166 ATTCCAGCGA
* *
102176 AGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCC-A-AGG
*
102219 AGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCC-AGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACT-CCAAGG
102260 TCAGGACCACTCCGACC
1 --AGGACCACTCCGACC
102277 TACCGGGTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
41 3 0.06
43 46 0.90
44 2 0.04
ACGTcount: A:0.24, C:0.30, G:0.34, T:0.13
Consensus pattern (41 bp):
AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCCAAGG
Left flanking sequence: Indices 101676 -- 102175
CCTTTTGCTTAGACTAGTCACCTAGGTTATCCAGCCTCCCCCGCTCTGGACAGTCAAAATAGAAC
TTCGTAGCATTAGGAAGGAGCTCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTAC
GTACACCTCCCCATACCCACTAGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAA
TAGCACTACGCGCTTTCCCACGGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATA
CGCGCTAATGGAATCGAATCCATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCT
AGTTCCCCCAACCCTTCAGGGTCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGC
GTCTAGGCGAAAGGGGTAGGGGGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCG
CCTTCTTTCTGGCTGTTTCTGTCCAAGAAAAACGGATTCCAGCGA
Right flanking sequence: Indices 102277 -- 102776
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGAC
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCCTATCGGTCGGAGTGGTCCTCCTGTCGGA
GGACCCTAGAATGACTAAATTCGCTAGGCAAACGACAGGGTGATGCGGGATGCACAGAGCAGCTT
ACTTTGCGCAAGCTAAGCTAGACGCAGGCACTTCGTAGTCCGATCACTCTCGCCGCTACCTGCAC
CTGCTCGCGCTTGTTCCGTTCCTTCCCACCTGCCCCGCACCACCGAGAGCGCCCACCTAGACTCT
TGGCCAAAAAGAATACTTTTCACTCAGGCTTGTCGGTTCAACCAACCTCGTTAGCCCCCTTAAAA
GTCTCGGGTCAAAGCCCTCCCTTCGAAGTGACTTCGGAGTCCTAA
Found at i:102308 original size:35 final size:35
Alignment explanation
Indices: 102262--102442 Score: 362
Period size: 35 Copynumber: 5.2 Consensus size: 35
102252 CTGCCAGGTC
102262 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
102297 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
102332 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
102367 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
102402 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
102437 AGGACC
1 AGGACC
102443 CTATCGGTCG
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 146 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 101762 -- 102261
TCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTACGTACACCTCCCCATACCCACT
AGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAATAGCACTACGCGCTTTCCCAC
GGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATACGCGCTAATGGAATCGAATCC
ATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCTAGTTCCCCCAACCCTTCAGGG
TCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGCGTCTAGGCGAAAGGGGTAGGG
GGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCGCCTTCTTTCTGGCTGTTTCTG
TCCAAGAAAAACGGATTCCAGCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATA
GGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGTC
Right flanking sequence: Indices 102443 -- 102942
CTATCGGTCGGAGTGGTCCTCCTGTCGGAGGACCCTAGAATGACTAAATTCGCTAGGCAAACGAC
AGGGTGATGCGGGATGCACAGAGCAGCTTACTTTGCGCAAGCTAAGCTAGACGCAGGCACTTCGT
AGTCCGATCACTCTCGCCGCTACCTGCACCTGCTCGCGCTTGTTCCGTTCCTTCCCACCTGCCCC
GCACCACCGAGAGCGCCCACCTAGACTCTTGGCCAAAAAGAATACTTTTCACTCAGGCTTGTCGG
TTCAACCAACCTCGTTAGCCCCCTTAAAAGTCTCGGGTCAAAGCCCTCCCTTCGAAGTGACTTCG
GAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCC
ATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCT
TTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAA
Found at i:103278 original size:10 final size:10
Alignment explanation
Indices: 103263--103320 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 10
103253 ATCGTCTAAG
103263 GTCTAAGATC
1 GTCTAAGATC
103273 GTCTAAGGACGAATC
1 GTCT-A--A-GA-TC
103288 GTCTAATGATC
1 GTCTAA-GATC
103299 GTCTAAGATC
1 GTCTAAGATC
*
103309 GTCTAGGATC
1 GTCTAAGATC
103319 GT
1 GT
103321 GATCGTCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 19 0.46
11 9 0.22
12 3 0.07
13 1 0.02
14 3 0.07
15 6 0.15
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (10 bp):
GTCTAAGATC
Left flanking sequence: Indices 102763 -- 103262
CTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATT
TACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGT
TTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGC
TCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAG
CCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAG
TTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTC
AAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAA
GGCCTTTAAAAGTCGTATAAGCCTTTAAATGACAAATCGTCTAAG
Right flanking sequence: Indices 103321 -- 103820
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:103308 original size:36 final size:36
Alignment explanation
Indices: 103252--103334 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
103242 TTAAATGACA
103252 AATCGTCTAAG---GTCTAAGATCGTCTAAGGA-CG-
1 AATCGTCTAAGATCGTCTAAGATCGTCT-AGGATCGT
103284 AATCGTCTAATGATCGTCTAAGATCGTCTAGGATCGT
1 AATCGTCTAA-GATCGTCTAAGATCGTCTAGGATCGT
*
103321 GATCGTCTAAGATC
1 AATCGTCTAAGATC
103335 ATCTGATTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
32 10 0.23
33 1 0.02
35 4 0.09
36 20 0.45
37 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (36 bp):
AATCGTCTAAGATCGTCTAAGATCGTCTAGGATCGT
Left flanking sequence: Indices 102752 -- 103251
CTTCGAAGTGACTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGT
GAAGCCGGATTTACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGAC
CGGGAGGTAGTTTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGC
CTTTAAAAGGCTCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCC
AGAGTGAGTAGCCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTT
TCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAA
TCCCGGATTTCAAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCAC
TTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCCTTTAAATGACA
Right flanking sequence: Indices 103335 -- 103834
ATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCGGACGATTCTCCGTA
GAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATGATGGGCTGCCAGTT
CCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGAATTAGTTAGGCACT
GAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCTGAATGGGCACT
GCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAATTGCCGGTTCGGAT
GATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCAAGAGAAACCAATTC
GGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTAAAGTTCGGAAAGCT
GAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCAC
Found at i:103334 original size:10 final size:10
Alignment explanation
Indices: 103285--103320 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
103275 CTAAGGACGA
103285 ATCGTCTAATG
1 ATCGTCTAA-G
103296 ATCGTCTAAG
1 ATCGTCTAAG
*
103306 ATCGTCTAGG
1 ATCGTCTAAG
103316 ATCGT
1 ATCGT
103321 GATCGTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (10 bp):
ATCGTCTAAG
Left flanking sequence: Indices 102785 -- 103284
GCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCCATTGCTAGTCCCAACCA
ACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCTTTAACTCGAACCGAGTT
AAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGCTCAGCGCTACGCGCTTCACAGC
GCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAGCCACGTCGGTCCGATTCTGGGT
GGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGA
AAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATT
TTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGC
CTTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGA
Right flanking sequence: Indices 103321 -- 103820
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:103626 original size:38 final size:37
Alignment explanation
Indices: 103546--103638 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
103536 TTAAAAGGCT
* *
103546 GAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCT
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
* *
103584 GAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCG
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
*
103622 GAATGGGCAATGATGAT
1 GAATGGGCACTGATGAT
103639 AGAATAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
37 5 0.10
38 44 0.90
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.25
Consensus pattern (37 bp):
GAATGGGCACTGATGATGGGCTGCCGTTCGACGTGCG
Left flanking sequence: Indices 103046 -- 103545
GCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAA
AACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATTT
TTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCC
TTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGAATCGTCTAATGATCGTCTAAG
ATCGTCTAGGATCGTGATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTC
GATCGGTCGACACCGGACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGG
GAGGGAAACATTATGATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTC
CGCAGTTCGGACTGAATTAGTTAGGCACTGAATTTTTAAAAGGCT
Right flanking sequence: Indices 103639 -- 104138
AGAATAATTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACT
GAACGCAAGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACG
GCCTTTAAAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCA
CTTTTTTACGGGTAGGGAAACTACGCTTAGGCCACGAACGAGGCAAAGTCTGGCAGCAGCCAATC
GCCAAGTCCCGAAGACCCGGAGAATCTTTTGGAATCCGCGCCCCGTAGCCCTACATGATGGGGTC
CTCCTCGTAGCCCTCGTAGGCCTCGCGTCAACAAGGCCTCTCCGATTTCTGGACTCAGAAGTGAA
TTCCACTGCGTGCACTTATCACTGCTTCGATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAA
GAACCTTTAATTTTCAATTAATTGAAAATTAAAGTTACTTTGGGG
Found at i:104595 original size:34 final size:34
Alignment explanation
Indices: 104557--104694 Score: 276
Period size: 34 Copynumber: 4.1 Consensus size: 34
104547 TCCCACTCCT
104557 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
104591 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
104625 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
104659 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
104693 CC
1 CC
104695 AGCGTTACTT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 104 1.00
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 104057 -- 104556
GATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAAGAACCTTTAATTTTCAATTAATTGAAAA
TTAAAGTTACTTTGGGGGAGACATTGAAATTCGCGCTACGCGCTTCCCTGGCAAGGGGTGGAACT
ATAGTGCACCCTCGCCCTATTCGAGACTCAAAAATCAATGCAGAGGCTATCTCGACTAAGTAAGA
TCGGGCAATAGATGTAGAAGAAGTCAAGTCCCGGCCTGGGCCAGTGTGGGAGGCCGAACCAAACT
GTAAGCTACCGGCCTTCGCTCGAACCCTTTAAAAGGGCTCGGTAATTTAAAAGGCAGCGCTACGT
GCCTAGACCCGGGCGGATGGAGGGTGGTCTTAGACCCTTTTAAAGGTGCTAGCGTTAAAGTACGA
AACCGAAAATGACTTGTATAGACGGTTCACCAAGGCGTACATGGCTAGCTACCGCGTACTGTGAA
ATTAACTTTCGAAGTGACCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 104695 -- 105194
AGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGG
TGTGAAATTAACTTTCTTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGC
CTTGCGGACTACTCGATGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCC
CGATAGGGGGAGGGGCGACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGG
AAAGCGCTACGCGCACCCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTAC
GCGCGCACCCACTACGTAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAAC
ACGGCAGGTAGGCCCCTACTTTCAGTGCCGATATTCGTTCGATGG
Found at i:105304 original size:24 final size:24
Alignment explanation
Indices: 105276--105324 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
105266 TCGCACTTGA
*
105276 CAGCTTAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
105300 CAGCTCAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
105324 C
1 C
105325 TGTCTCAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.41, G:0.08, T:0.22
Consensus pattern (24 bp):
CAGCTCAACGAACTACTTCCCACT
Left flanking sequence: Indices 104776 -- 105275
AGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGGTGTGAAATTAACTTTC
TTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGCCTTGCGGACTACTCGA
TGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCCCGATAGGGGGAGGGGC
GACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGGAAAGCGCTACGCGCAC
CCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTACGCGCGCACCCACTACG
TAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAACACGGCAGGTAGGCCCC
TACTTTCAGTGCCGATATTCGTTCGATGGCAGTTCGTCCTTACGGCAGGTCCTCTCGTTGTTCGC
TCGCGTAGCGCTAAGCGGTAGCATCTATATACGGCTCGCACTTGA
Right flanking sequence: Indices 105325 -- 105824
TGTCTCAGTCGTTCCCAGTCAGCTGAGCAGTCAGTCTTCCCAGCTTCGGCGTGCCCAACCATTAT
TGGATTCCTCTCTCCGTTCCGTACGAACCACTGACTCCTTACAAAAAGGGGGAGAAGCGGTTTCA
AAAAGGCCGTTGAAAGGGAGAAGAGGAAGGATGTCGAAGCTAATAAGGGATACGTTGGTGCTGAC
ATCGACTCGGTGGGGGACCCATTCCGCTCTCCACCACCAGGACGGGCCACCACCACCTTCTCTGT
TCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAGTACGTGACTTTA
AAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATTGAAAGTACTTTA
ATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATTAAATGAAATTAA
AGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCAC
Found at i:106134 original size:43 final size:43
Alignment explanation
Indices: 106073--106160 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
106063 GCCGTCGCGA
106073 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
106116 AAACC-TAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
106159 AA
1 AA
106161 CCCCACTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (43 bp):
AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 105573 -- 106072
CACCTTCTCTGTTCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAG
TACGTGACTTTAAAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATT
GAAAGTACTTTAATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATT
AAATGAAATTAAAGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCACGTGTGGGA
CTACAGGACCACTGGGTAGGGCCCATCGTATCACGAGTTTGTAGGTGGTGGTGGACATTACTGAC
ATAACAGAGTCGGATCCTCGGCCTATCGGCCTCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCC
TCCAATGAACTCAGCCAGCCTGACTCCTTGATGCGGTGGTCGATATGGCCCAACTCCTCCCTATC
GGTCGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 106161 -- 106660
CCCCACTTTAATTTTCAATGAAATTAAAAAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGC
TCAGGTCGGAGAAACGTCCGCTGGTGGCTAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGC
CCCATAAAGTCCGCACATTAGCCTAATACAGCCCCGGATAAGCGTCCGCACATTAGCCTGATACG
GAGCCGGATAAGCGTCCGCTTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAG
CGTCCGGAGAAGCGACTTTTAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTC
CGGAGAAGCGTCCTCATTGTTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCT
TCCGGAGAAGCGGCCCCGTACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTT
ACGAGCCCTGGCAACGCATGGATTGTCCGTGCATTAGCCGGCAGA
Found at i:106339 original size:35 final size:35
Alignment explanation
Indices: 106299--106374 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
106289 GCCCCATAAA
*
106299 GTCCGCACATTAGCCTAATACAGCCCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
* * *
106334 GTCCGCACATTAGCCTGATACGGAGCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
106369 GTCCGC
1 GTCCGC
106375 TTCCGGCGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (35 bp):
GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
Left flanking sequence: Indices 105799 -- 106298
AAAAATCAACGATGGAAACCTTGCACGTGTGGGACTACAGGACCACTGGGTAGGGCCCATCGTAT
CACGAGTTTGTAGGTGGTGGTGGACATTACTGACATAACAGAGTCGGATCCTCGGCCTATCGGCC
TCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCCTCCAATGAACTCAGCCAGCCTGACTCCTTGA
TGCGGTGGTCGATATGGCCCAACTCCTCCCTATCGGTCGGAGTGGGGGGAGTTGGCCCTTTAAAG
GAGCGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAA
GTAACCTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAA
AAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGCTCAGGTCGGAGAAACGTCCGCTGGTGGC
TAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGCCCCATAAA
Right flanking sequence: Indices 106375 -- 106874
TTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAGCGTCCGGAGAAGCGACTTT
TAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTCCGGAGAAGCGTCCTCATTG
TTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCTTCCGGAGAAGCGGCCCCGT
ACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTTACGAGCCCTGGCAACGCAT
GGATTGTCCGTGCATTAGCCGGCAGACAGAGCCGGAAATCTGTAAACGTACTCTATGGAGAAACG
GCCTCTTGCGGCTAGAAAGGGGGCCTCGATTCCACTCGATGGTTTGGAAAAGGGGCTTTAGCCTG
TCGCCCCTAACCACCACCACCCATAAATGGATGAATGGGTGGTGGCCTTCAAAGGGGCGACAGTA
GGGAAAATGGATTGATGCTCAACCGGGAGAATCCGTAGAATATCG
Found at i:109734 original size:70 final size:70
Alignment explanation
Indices: 109651--109785 Score: 270
Period size: 70 Copynumber: 1.9 Consensus size: 70
109641 AGGTTATATT
109651 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
109716 GGAAG
66 GGAAG
109721 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
109786 CTTTTTCTTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
GGAAG
Left flanking sequence: Indices 109151 -- 109650
TGGAAGGTTGCGGATACGACTTCGTGTCTTCTTTAAGAGGTCAACCGCCGCTTGGCCTGGATGAT
GTCCTGGTTGATTGGCCGACTCTAACGTCCCAAATAGCCAAAGGCTTATTACTTGTTCAACCTGC
GGTCTCTTTCTGCTTGACGGATTTGGAACTCTTGCATGAGTCATTGGTTACACTGGCGGGAGGAG
ACGAGCTTTTGGTAGAGTTCTCCGAGGATCCGGCCTTTGAAGGTCTACTTTTGGACTCGCTTAAA
ACGGTACTACCGCCGTCCTATTTTAGGGCTTTTTTCTCCGGTAGACTGTTCCGGGAGCTAATCCA
TTTGGAGGACGGATACTCTCGCCTTGTGGGGCAAATGCTTTCGGAACTCGAAGATCTAAGTACGC
CCTAAGGAGACGGTTTCTATGTTCGCCAACTCCGATTGATTAGTATTGATTCCGCGGATTCCGTC
AAGGGTTACTTTAATTTCATTTCATTGAAAATTCAAGGTTATATT
Right flanking sequence: Indices 109786 -- 110285
CTTTTTCTTGAGTTTCCCGGGATTTTTTGACACTTTAGGCGTTGCTTGGGCGGTTATCCCTTCTA
AAAATTCAATGAATTTTCAATCAACTCCTCGGGTTACTTTAATTTAATTTCATTGAAAATTAAAG
GTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAATTGAACTAATTTTCAATTAATTG
AAAATTAATGCATTGAAATTGAAGTCACTTTAACTTTTGCAACTTTAAAGGCTCCCATTAAGATT
GAGAAATAATAAAAGTTCCTTTTGAAACGTTTGAGCATGATTTTCTAGCGCTTTTCCCAGAGATC
TTTCTCACTAACGCAACCATCGTTTTGCTCATTCATGGAGTTTTCAAAAGTACTTCTAAAGAGGA
TGATTATCCACCGTTAGTACTACATGCGGGGTGGCTTGGTTTACTTAGTGTTGTGCGCCTGGGAG
GGCACGTTCTGGGAGGCGAGGGTTGAAAGCCATCGCTCGGATGGA
Found at i:113703 original size:33 final size:33
Alignment explanation
Indices: 113656--113719 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
113646 CCTCCCGGTA
* *
113656 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGCTCGGACCCGC
*
113689 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGCTCGGACCC
113720 TTCGGCGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.08, C:0.34, G:0.33, T:0.25
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 113156 -- 113655
ACCCAGCGCCACACGTTCTCCTGGGTCCCGGCAGGGGATCCCTCAAGTGCCCTTATCTCGGCTTC
TCCCGGAATAGGCGTTATCGAAGACAAGCCAGGAATGGCCGAAGTGAGTGGACACCCACTTTACC
GGTTAGAGAGGCCCTCTCTAAAACATTCACCAAAATGTTCACAGGGGCTAGGAACACTCGGTCGT
GGTGGGAACTTTTGTACATCATCCACGGAGCGCTCCGGAGTACACCCGACCAAATCTACTAAACG
ACTCAGGCCCTGCCGGGCACCCTTTAGGGAAGCCGGCCCTCGGCCGCCCCGATCACTACAACCGC
CAGCTCTCCCCAGGAGGAATGATATTGGATAAAGGGCCGGCAGGCCAACTCCTTTAAACCCCACC
TTAGGCTCTAAAGGGTGGGGTTTAAAGGAGTAGGCTAAAGCCCAACTTCCGCCCCCCACCACTTC
GGGGTGGTGGTGTGGGGGGCGGAAGTTGCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 113720 -- 114219
TTCGGCGTTACTTTAATTTAATTTCCTTGAAATTTCTCCATTTCTCCCTTTAAGTGCCTCGGACC
CCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCCCCCTTCGGTCGGAGTT
GTCCTCGCCTCGGACCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGT
ACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACC
AACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCG
GAGTTGTCCTTCGGACCCTTGGGGGCCCCTGGCCCTTGCGGGCCC
Found at i:114137 original size:39 final size:36
Alignment explanation
Indices: 114081--114191 Score: 132
Period size: 46 Copynumber: 2.8 Consensus size: 36
114071 TTCGTTCGGA
114081 CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
1 CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
114117 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCT
1 CCCTATCGG---TCGGAGTTG---TCCT-TCGGA---CCAACTCCT
114163 CCCTATCGGTCGGAGTTGTCCTTCGGACC
1 CCCTATCGGTCGGAGTTGTCCTTCGGACC
114192 CTTGGGGGCC
Statistics
Matches: 65, Mismatches: 0, Indels: 20
0.76 0.00 0.24
Matches are distributed among these distances:
36 11 0.17
39 14 0.22
40 4 0.06
42 4 0.06
43 14 0.22
46 18 0.28
ACGTcount: A:0.14, C:0.35, G:0.24, T:0.26
Consensus pattern (36 bp):
CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 113581 -- 114080
TAAAGCCCAACTTCCGCCCCCCACCACTTCGGGGTGGTGGTGTGGGGGGCGGAAGTTGCCCAACT
CCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGCGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGCGTTACTTTAATTTAATTTCCTTGAAATTTCTCCATTTCTCCCTTTAAGTG
CCTCGGACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCCCCCTTCG
GTCGGAGTTGTCCTCGCCTCGGACCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTA
CTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACT
CCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCAC
TCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 114192 -- 114691
CTTGGGGGCCCCTGGCCCTTGCGGGCCCCTACCCCAGCAAGTGGCCTTTGGCCAGGCAAGCCGTA
AGGCTTCCCGCCGGTGGTGCGGCAGGCACCCCCTCGACCTATCGGTCGAGTGGTTTGCTGGCGCC
CCTGCCCCACCACCCCCCCCCATGAAGTTGGTGGGGGAGGGAGTTGGGCCGGCAGGCCTCTCGTC
CCCACCCACTTTGTAGGCGGTGGTGGGGACGAGAGGGCGGCCCCTACCCCAGCCAGTGGCCTTTG
GCCCCACCACCCTTGGAGTGGGTGGGGACGGGAGCGTTGTTTTCCTGGGCGCTACGCGCTTCACG
GAGCGCTAGAGGAACGACGAGGTTGAGACTGGTTGGGCAATAAAACGCTTCGCGTTTTATTGCGC
CTCAGAATAATGAGATGGAGTCAATAGTGTTCGTGCGAGCCGTATGCGGTGAGAGTCGCACGTAC
GGTTACGAGGAGGTTCGCGTCCATAGTAGGGTGTGGATGGGGGCC
Done.