Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_030900
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 372339
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 4 of 4
Found at i:329392 original size:33 final size:34
Alignment explanation
Indices: 329343--329412 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 34
329333 CCCAACTCTT
*
329343 CCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
*
329377 CCCTTCGG-CGGAGTTGTCCTCGCTTCGCTCGGA
1 CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
329410 CCC
1 CCC
329413 GGTAGGTCGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.07, C:0.37, G:0.27, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTTGTCCTCACTTCGCTCGGA
Left flanking sequence: Indices 328843 -- 329342
GCCGGCACCAGAAACACCCAAAGAGCCTAATGATTGGGCACGCGAAGGAAGGGGTCTCCATTGCC
AGCCAAGGGAACATCGTTTCGACGCCCATCTCCTTCCCAATAACGAAAGAAGGGAATTTTCGGCC
GGATAAATTCTTAGAATTTTCAATTAAATTAAATTAAAGTAACTTAACCTAAGTTACTTTAGTTT
AATTTAATTGAAAATTAAGTTACTTTAGTCGCACTTCATCTATTTTCTCCTGTGATACTCGAGGG
TGTCTTTCGGTTGCTCTCGCCCGTCAGAGCATTAGCGTCGATTCTGAACCTTAAGAGTTCGACGG
GTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCCTGCTCCTCGAGCGGTAGC
TCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAATGCTTGAAGCGAGCCTTGC
GGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTT
Right flanking sequence: Indices 329413 -- 329912
GGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCTCCT
TTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAACTC
CTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAACTCCCCCCACTCC
TCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCCTGATGCCGAACGGTAGATTGGAGGT
GTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCTTAATC
Found at i:329589 original size:34 final size:35
Alignment explanation
Indices: 329504--329594 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
329494 CCCCACTCCT
329504 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
329539 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
329574 CCC-TTCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
329595 ATCGGACCAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
34 16 0.30
35 38 0.70
ACGTcount: A:0.10, C:0.30, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 329004 -- 329503
AATTAAAGTAACTTAACCTAAGTTACTTTAGTTTAATTTAATTGAAAATTAAGTTACTTTAGTCG
CACTTCATCTATTTTCTCCTGTGATACTCGAGGGTGTCTTTCGGTTGCTCTCGCCCGTCAGAGCA
TTAGCGTCGATTCTGAACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATT
TTTTCCAAGAGTTTCCTGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCA
AATAGGCCACCCAAATGCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAA
CTCCCCCAACTCTTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGT
CCTCGCTTCGCTCGGACCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGT
TTTCGCGCGTAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 329595 -- 330094
ATCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAA
CTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCCTGATGCCGAACG
GTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCTTAATCTGGTAGT
GTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCATTCAATGTTTGAG
AGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGAAAAGGGTCGTTAC
TCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGC
Found at i:329661 original size:9 final size:9
Alignment explanation
Indices: 329650--329712 Score: 81
Period size: 9 Copynumber: 7.0 Consensus size: 9
329640 CGGAGGACCA
*
329650 ACTCCTCCA
1 ACTCCTCCC
*
329659 ACTCCCCCC
1 ACTCCTCCC
329668 ACTCCTCCC
1 ACTCCTCCC
*
329677 ACTCCCCCC
1 ACTCCTCCC
*
329686 ACTCCTCCA
1 ACTCCTCCC
*
329695 ACTCCCCCC
1 ACTCCTCCC
329704 ACTCCTCCC
1 ACTCCTCCC
329713 GGTAGGTCGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.14, C:0.68, G:0.00, T:0.17
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 329150 -- 329649
ACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCC
TGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAAT
GCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGA
CCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 329713 -- 330212
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACCC
TGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGCT
TAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCAT
TCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGAA
AAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGCAGCAGTGG
GCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAGAATCAGAG
TACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCCT
Found at i:329671 original size:18 final size:18
Alignment explanation
Indices: 329650--329711 Score: 115
Period size: 18 Copynumber: 3.4 Consensus size: 18
329640 CGGAGGACCA
329650 ACTCCTCCAACTCCCCCC
1 ACTCCTCCAACTCCCCCC
*
329668 ACTCCTCCCACTCCCCCC
1 ACTCCTCCAACTCCCCCC
329686 ACTCCTCCAACTCCCCCC
1 ACTCCTCCAACTCCCCCC
329704 ACTCCTCC
1 ACTCCTCC
329712 CGGTAGGTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.15, C:0.68, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCAACTCCCCCC
Left flanking sequence: Indices 329150 -- 329649
ACCTTAAGAGTTCGACGGGTGTAAGCTGCTGAAGGGAGGGTAGGAGATTTTTTCCAAGAGTTTCC
TGCTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAAT
GCTTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGA
CCCGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 329712 -- 330211
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTACGGACC
CTGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATGATCTTGC
TTAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGCAGCTGCA
TTCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAATCTCGAGA
AAAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGCAGCAGTG
GGCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAGAATCAGA
GTACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCC
Found at i:329760 original size:34 final size:34
Alignment explanation
Indices: 329717--329834 Score: 218
Period size: 34 Copynumber: 3.4 Consensus size: 34
329707 CCTCCCGGTA
329717 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
329751 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
329785 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
329820 GGTCGGAGTTGTCCT
1 GGTCGGAGTGGTCCT
329835 ACGGACCCTG
Statistics
Matches: 82, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
34 66 0.80
35 16 0.20
ACGTcount: A:0.09, C:0.31, G:0.31, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 329217 -- 329716
CTCCTCGAGCGGTAGCTCGATCCATGAGAGAAGCACCAAACAATGCAAATAGGCCACCCAAATGC
TTGAAGCGAGCCTTGCGGTAGAGGACTCCCACTTACCATCTTGCCAACTCCCCCAACTCTTCCCT
TCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTTGTCCTCGCTTCGCTCGGACC
CGGTAGGTCGGGCCGGGGGTTTAAAGTAGCGACTTTAAACGCCGGGTTTTCGCGCGTAGCGCTCC
TTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTATCGGACCAACT
CCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCAACTCCCCCCACTC
CTCCCACTCCCCCCACTCCTCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 329835 -- 330334
ACGGACCCTGATGCCGAACGGTAGATTGGAGGTGTGAACGGACGTGTTAGACATTGCTGGTAATG
ATCTTGCTTAATCTGGTAGTGTGAGATCGAAGAGTCTTCTCATTCGGAATCAAGGAAGGAAGAGC
AGCTGCATTCAATGTTTGAGAGGATGGAGAGTAGGCTTGTGAAAATTGAAGCTAGTCTTCTGAAT
CTCGAGAAAAGGGTCGTTACTCCAGGGGGTAACACCCCGGGGGATGACCCCCCCACTACTTTTGC
AGCAGTGGGCCCCAACCCCGAGTCGGAAGTCTCGGGTCAGGGAGAGAGAGATTGTGCGTCCTCAG
AATCAGAGTACTACTTTAGTGACTCAGACACGGAGGATAAAGAGCCATTTCCTGACGACGTGGGG
GTGCTTCGCGCTAAGTACCGTGTACTGGAGAGGCGGTACAAGGAAATGAGACACTTTCTGGAAAA
CCAGAAGACCTTGGTCTCACTGGGGAGCTGGTGTACCAGAGACGG
Found at i:331325 original size:33 final size:33
Alignment explanation
Indices: 331288--331352 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
331278 CTCTCGTCTT
331288 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
1 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
331321 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCC
1 CCAACTCCTCCCTTCGGAATTCGGAGTTGTCC
331353 TCGCTTCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (33 bp):
CCAACTCCTCCCTTCGGAATTCGGAGTTGTCCC
Left flanking sequence: Indices 330788 -- 331287
AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGA
GGACAACTCCGACCGAAGGGAGGAGTTGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGA
CCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCGGG
TCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTCAAGATAGGGGGCCTAAAGGGCTAAC
TAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTCATGGAGTCAATCAGCTTCAAGGAGT
TAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCCTTCCTAGTCCTCAAGAACCTCGTGT
AGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAAATAGTAGTGTCCTGCCTTGCCTAGT
CTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTCGTCTT
Right flanking sequence: Indices 331353 -- 331852
TCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAACTCCT
CCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCCTCCGACAGGAGGACCACTCCGAATT
CCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGT
CCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCT
GCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGCCTGAGG
ACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGCTGTTGT
TCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGT
GCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAGCAT
Found at i:331433 original size:27 final size:28
Alignment explanation
Indices: 331381--331434 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
331371 GTAGGTCGGA
331381 CCAACTCCTCCCTATCGGCCGGAGTTGG
1 CCAACTCCTCCCTATCGGCCGGAGTTGG
*
331409 CCAACTCCTCCCT-TCGGTCGGAGTTG
1 CCAACTCCTCCCTATCGGCCGGAGTTG
331435 TCCTCCGGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 12 0.48
28 13 0.52
ACGTcount: A:0.13, C:0.39, G:0.24, T:0.24
Consensus pattern (28 bp):
CCAACTCCTCCCTATCGGCCGGAGTTGG
Left flanking sequence: Indices 330881 -- 331380
GGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACA
ACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTA
GGGGCCTCAGTCAAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACC
CTGTGCTGTTTCATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTC
CGTTAGCCATCCTTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGC
GTCCTCCGCGAAATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCAT
AGTCCCCCTCTCGTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTC
GGAATTCGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGA
Right flanking sequence: Indices 331435 -- 331934
TCCTCCGGACCCTGGCAGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGG
GTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACC
ACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGT
AGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAG
TAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTG
GTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAA
GACAGCGAATCCGAAAGGATCGGAGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCG
CCCCCTGCCACCCTTGGCCCATTCGAAAAGCCGTTGAAAACTCGA
Found at i:331486 original size:24 final size:25
Alignment explanation
Indices: 331458--331587 Score: 66
Period size: 24 Copynumber: 5.6 Consensus size: 25
331448 GGCAGGGTCC
331458 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
* ****
331482 TCCGAGAGGGAGGAGTGGGTCC----
1 TCCGACAGGGAGGA-CCACTCCGAAT
331504 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
* ****
331528 TCCGAGAGGGAGGAGTGGGTCC----
1 TCCGACAGGGAGGA-CCACTCCGAAT
331550 TCCGACA-GGAGGACCACTCCGAAT
1 TCCGACAGGGAGGACCACTCCGAAT
*
331574 TCCGATAGGGAGGA
1 TCCGACAGGGAGGA
331588 GTTGGCCAGG
Statistics
Matches: 72, Mismatches: 21, Indels: 25
0.61 0.18 0.21
Matches are distributed among these distances:
20 6 0.08
21 12 0.17
22 12 0.17
24 18 0.25
25 18 0.25
26 6 0.08
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.13
Consensus pattern (25 bp):
TCCGACAGGGAGGACCACTCCGAAT
Left flanking sequence: Indices 330958 -- 331457
GGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTC
AAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTC
ATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCC
TTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAA
ATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTC
GTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATTCGGAGT
TGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAA
CTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCC
Right flanking sequence: Indices 331588 -- 332087
GTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTC
TCAGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCC
TAGCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCC
GCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGG
AGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATT
CGAAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAAC
TGCTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGGC
ATCGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTA
Found at i:331494 original size:25 final size:25
Alignment explanation
Indices: 331465--331541 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
331455 TCCTCCGACA
331465 GGAGGACCACTCCGAATTCCGAGAG
1 GGAGGACCACTCCGAATTCCGAGAG
**** *
331490 GGAGGAGTGGGTCC----TCCGACA-
1 GGAGGA-CCACTCCGAATTCCGAGAG
331511 GGAGGACCACTCCGAATTCCGAGAG
1 GGAGGACCACTCCGAATTCCGAGAG
331536 GGAGGA
1 GGAGGA
331542 GTGGGTCCTC
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
20 3 0.08
21 6 0.17
22 6 0.17
24 6 0.17
25 12 0.33
26 3 0.08
ACGTcount: A:0.26, C:0.25, G:0.38, T:0.12
Consensus pattern (25 bp):
GGAGGACCACTCCGAATTCCGAGAG
Left flanking sequence: Indices 330965 -- 331464
GTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCCTCAGTCAAGATAG
GGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGCTGTTTCATGGAGT
CAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAGCCATCCTTCCTAG
TCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTCCGCGAAATAGTAG
TGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCCCCTCTCGTCTTCC
AACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTC
GCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTTGGCCAACTCCTCC
CTTCGGTCGGAGTTGTCCTCCGGACCCTGGCAGGGTCCTCCGACA
Right flanking sequence: Indices 331542 -- 332041
GTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTA
CGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTCAGTCCCTTTGCGTGAGC
CTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTAGCCGCCCTTCTTCCCGC
TGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGCTCCGAAGAAGCATCTAT
GCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAGCATCATAGCTTAGCGCA
CTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATTCGAAAAGCCGTTGAAAACT
CGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAACTGCTGTCGTCTCTTCCTCC
ATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGG
Found at i:331519 original size:46 final size:46
Alignment explanation
Indices: 331452--331589 Score: 267
Period size: 46 Copynumber: 3.0 Consensus size: 46
331442 GACCCTGGCA
331452 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
331498 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
*
331544 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGATAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
331590 TGGCCAGGGC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 91 1.00
ACGTcount: A:0.24, C:0.26, G:0.36, T:0.14
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 330952 -- 331451
ACCGAAGGGAGGAGTTGGAGGAGTTGGCGGGTCTTTCCTACGGGGCCAAGGCGAGAGTAGGGGCC
TCAGTCAAGATAGGGGGCCTAAAGGGCTAACTAGTTCTATGAGGGCACTCTCTGATACCCTGTGC
TGTTTCATGGAGTCAATCAGCTTCAAGGAGTTAGCCTCCACTTGTGTTCACTCCCTCTCCGTTAG
CCATCCTTCCTAGTCCTCAAGAACCTCGTGTAGTAGTCCCCTATCATGCTGGATAGTGCGTCCTC
CGCGAAATAGTAGTGTCCTGCCTTGCCTAGTCTGGTCATCGTTTGGTCGTCACTCCCATAGTCCC
CCTCTCGTCTTCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCCCCAACTCCTCCCTTCGGAATT
CGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGTCGGACCAACTCCTCCCTATCGGCCGGAGTT
GGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCCTGGCA
Right flanking sequence: Indices 331590 -- 332089
TGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCCCCCTGCCCCTGAGGTTCTC
AGTCCCTTTGCGTGAGCCTGAGGACTCGCAGACGGTGTAGTAGTCAGACGAGTTTTGGCACCCTA
GCCGCCCTTCTTCCCGCTGTTGTTCGGTCAGGTGGTGTTGGTAAAAACGTGTAAAAAGCTCCCGC
TCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCGAAAGGATCGGAG
CATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCCTTGGCCCATTCG
AAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGAGAAGTTGAACTG
CTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTTGGTTCGGGGCAT
CGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTATG
Found at i:332299 original size:23 final size:24
Alignment explanation
Indices: 332273--332332 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
332263 AGTGAACAAA
332273 GGGTCCCACCCC-CAAAAAGTAGG
1 GGGTCCCACCCCACAAAAAGTAGG
** *
332296 GGGTCCCACCCCACCGATAGTAGG
1 GGGTCCCACCCCACAAAAAGTAGG
332320 GGGTCCCCACCCC
1 GGGT-CCCACCCC
332333 GAGGTTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 12 0.38
24 12 0.38
25 8 0.25
ACGTcount: A:0.22, C:0.42, G:0.27, T:0.10
Consensus pattern (24 bp):
GGGTCCCACCCCACAAAAAGTAGG
Left flanking sequence: Indices 331773 -- 332272
AAAAGCTCCCGCTCCGAAGAAGCATCTATGCAAGTGCTAGCGCTGGTGCCAAGACAGCGAATCCG
AAAGGATCGGAGCATCATAGCTTAGCGCACTCCCTCGGCCTTCGGGGCTTCGCCCCCTGCCACCC
TTGGCCCATTCGAAAAGCCGTTGAAAACTCGAAATTGTTTCATTAATTCACGTATATGGATTCGA
GAAGTTGAACTGCTGTCGTCTCTTCCTCCATAGGCTCCGCTCCTAGTATTCCTAGCTTCACAGTT
GGTTCGGGGCATCGGGACGCATGCCGGCCGGGTAGTATTATCTATCTATTGGTTATGAATCAAGT
GGATCCGCCGGGCACTATGTTGGCTAGCCACTCTTCCAACAATAATAGGGAGCCGAGGATATGGA
TTCGAATGAAGTGGTTGGTATGTCTCACTCGACTGCGGAAATGAATCCTACCCCCTTCGCTGCGA
AGGTGGCTTCCTGGATAGTTGGTTTGTTCCGGCCCAGTGAACAAA
Right flanking sequence: Indices 332333 -- 332832
GAGGTTTTACACGCGATAGGGGTCCATCGTTGATTCCTTCTCCCGGAACATGGCCTCTGCGTTAA
CGAACCGAAGGAGCGTATGGTGGGCCGACTGCTTCAATTGCTTCCGAAACTGAGTCAGAAACTTC
TGCTGTTGCTGGCGCTGAAGGAACGGCCGAAGAAACTGGAATTGATTCAATATCTTCAGAACAAA
ATCCCATGTATATAGTAGATCCTCCAGCAGGAGAGATCACAGTAATTCCGGTAGAATATACCACT
TAATACTTTACGTCCTAATACTTTACGTCTCATATCTTCTAGTGATTCCGGGTTTAGCCTTTATC
CTCAATTTTCCCTCCCAACTTTGATCAGAGCTCCATTTAAGGGCAGGGGGGCGCTACGCGCCCCC
CGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGAGGAG
TTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGA
Found at i:332613 original size:15 final size:15
Alignment explanation
Indices: 332593--332621 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
332583 ATATACCACT
332593 TAATACTTTACGTCC
1 TAATACTTTACGTCC
332608 TAATACTTTACGTC
1 TAATACTTTACGTC
332622 TCATATCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (15 bp):
TAATACTTTACGTCC
Left flanking sequence: Indices 332093 -- 332592
CAAGTGGATCCGCCGGGCACTATGTTGGCTAGCCACTCTTCCAACAATAATAGGGAGCCGAGGAT
ATGGATTCGAATGAAGTGGTTGGTATGTCTCACTCGACTGCGGAAATGAATCCTACCCCCTTCGC
TGCGAAGGTGGCTTCCTGGATAGTTGGTTTGTTCCGGCCCAGTGAACAAAGGGTCCCACCCCCAA
AAAGTAGGGGGTCCCACCCCACCGATAGTAGGGGGTCCCCACCCCGAGGTTTTACACGCGATAGG
GGTCCATCGTTGATTCCTTCTCCCGGAACATGGCCTCTGCGTTAACGAACCGAAGGAGCGTATGG
TGGGCCGACTGCTTCAATTGCTTCCGAAACTGAGTCAGAAACTTCTGCTGTTGCTGGCGCTGAAG
GAACGGCCGAAGAAACTGGAATTGATTCAATATCTTCAGAACAAAATCCCATGTATATAGTAGAT
CCTCCAGCAGGAGAGATCACAGTAATTCCGGTAGAATATACCACT
Right flanking sequence: Indices 332622 -- 333121
TCATATCTTCTAGTGATTCCGGGTTTAGCCTTTATCCTCAATTTTCCCTCCCAACTTTGATCAGA
GCTCCATTTAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGAGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTC
CGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGAC
AACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
Found at i:333011 original size:34 final size:34
Alignment explanation
Indices: 332950--333039 Score: 171
Period size: 34 Copynumber: 2.6 Consensus size: 34
332940 GTTGGTCCGA
332950 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
332985 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
333019 AGGACCACTCCGACCGAAGGG
1 AGGACCACTCCGACCGAAGGG
333040 AGGAGTTGGA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 38 0.69
35 17 0.31
ACGTcount: A:0.29, C:0.30, G:0.32, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 332450 -- 332949
AGTCAGAAACTTCTGCTGTTGCTGGCGCTGAAGGAACGGCCGAAGAAACTGGAATTGATTCAATA
TCTTCAGAACAAAATCCCATGTATATAGTAGATCCTCCAGCAGGAGAGATCACAGTAATTCCGGT
AGAATATACCACTTAATACTTTACGTCCTAATACTTTACGTCTCATATCTTCTAGTGATTCCGGG
TTTAGCCTTTATCCTCAATTTTCCCTCCCAACTTTGATCAGAGCTCCATTTAAGGGCAGGGGGGC
GCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGACCG
ATAGGGAGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCGA
Right flanking sequence: Indices 333040 -- 333539
AGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
GAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGG
AGTTGGTCCGACCAAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGG
ACAACTCCCCGATAGGGGAGTTGGGCAACGTCTCCACTTTTGACCAACATTTACCTGCATCACCT
GGACCAGGCTAGGGGGGACTAGTACACTATGTTAGGTATGCCGACAACTTTCTGGTGGGCACTAA
GAAAGGGACTTGCCCTCGGGAGGTGGGGGAAAGACTTAGAAACCACACTGCTGACCTTTCGCATA
TTTTTCCTTCAAGTAAAGGGCTACGTCATTCCTATCTGAATTGGCAGGTGGAAAGGCACTGCTTC
TCTCCCTGGTCCATGAACTCCGTGTGGGCGGTCCACTTCTCAACT
Found at i:335188 original size:9 final size:9
Alignment explanation
Indices: 335174--335220 Score: 76
Period size: 9 Copynumber: 5.2 Consensus size: 9
335164 GTCCTTCGGA
335174 CCAACTCCT
1 CCAACTCCT
335183 CCAACTCCT
1 CCAACTCCT
*
335192 CCCACTCCT
1 CCAACTCCT
*
335201 CCCACTCCT
1 CCAACTCCT
335210 CCAACTCCT
1 CCAACTCCT
335219 CC
1 CC
335221 CGGTAGGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.17, C:0.62, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 334674 -- 335173
AGAAGCTCAACGATAGGATTTCTTACTGGAATTCCTTCTTGTTGGTGGCTAAAGCCCAACTCCCC
CCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGAATTCGGAGTTGGC
TAACTCCTCCCTATCGGAATTCGGAGTTGCCCTGTGCCTGGCAGGGTTCGGCCCCCGGGGGTTTA
AACGCCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGGCGGGAGGAGTTGCCAGGGGTC
GGCCCCCGGGGGTTTAAACGCCCCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCGCTTCGCTCGG
ACCCTGCCAACTCCTCCCGTGCGGAATCATTTGTTGTCCCCCCACTCCTCCCGGTAGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTG
GTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 335221 -- 335720
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTTCGGAGGGCC
CTGGAAGGGAATTCCTTTTTTTGGTGGCTCGAGTAGGGTCTCTCGACATTTTCCTACTACAGTAG
GCGCAGAGAGCCACGGTAGGTTATCTCGTTTCACTGCCTAGAAGCCGAGACTCTGGCCAGTATGA
TGGATAATAAGGCCGTGAGAGGTGGTGGTACTGAACTTTCTTCGTACCGCTTCTTCTCCATATTC
CCTCTCTTCACACACACTAGTCAGTAGATCCAGAGCTACACCGCA
Found at i:335327 original size:64 final size:64
Alignment explanation
Indices: 335226--335454 Score: 449
Period size: 64 Copynumber: 3.6 Consensus size: 64
335216 CCTCCCGGTA
335226 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
335290 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
335354 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
335418 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
335455 TCGGAGTGGC
Statistics
Matches: 164, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 160 0.98
65 4 0.02
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 334726 -- 335225
AGCCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGA
ATTCGGAGTTGGCTAACTCCTCCCTATCGGAATTCGGAGTTGCCCTGTGCCTGGCAGGGTTCGGC
CCCCGGGGGTTTAAACGCCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGGCGGGAGGA
GTTGCCAGGGGTCGGCCCCCGGGGGTTTAAACGCCCCCAACTCCTCCCTTCGGTCGGAGTTGTCC
TCGCTTCGCTCGGACCCTGCCAACTCCTCCCGTGCGGAATCATTTGTTGTCCCCCCACTCCTCCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCCACTCCTCCCACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 335455 -- 335954
TCGGAGTGGCCCTCCTTCGGAGGGCCCTGGAAGGGAATTCCTTTTTTTGGTGGCTCGAGTAGGGT
CTCTCGACATTTTCCTACTACAGTAGGCGCAGAGAGCCACGGTAGGTTATCTCGTTTCACTGCCT
AGAAGCCGAGACTCTGGCCAGTATGATGGATAATAAGGCCGTGAGAGGTGGTGGTACTGAACTTT
CTTCGTACCGCTTCTTCTCCATATTCCCTCTCTTCACACACACTAGTCAGTAGATCCAGAGCTAC
ACCGCACTTCTTCGAGACGGAAGAAGGTTCGAATTCGAGTGCTTCCCGCTTCGCTAGTGCAAGCG
CCTTATCCCTTTCCCTTCCCAGAATTCCCAAGATCGAGTGCACTCGATTTAAGTGGTACGCACTC
GATACTTGGAAACACAGAAAAGCATGGGCCGCGATCAGTTGTTGGGGTAGAGAGCCTATGCGCTA
GACGTGCTTGTATGGTTCGGAGAGGACTCAGCGTACACCGATCCT
Found at i:336419 original size:64 final size:64
Alignment explanation
Indices: 336313--336541 Score: 449
Period size: 64 Copynumber: 3.6 Consensus size: 64
336303 ACCACTCCGA
336313 CCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
336378 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
336442 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
336506 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
336542 GAAGGGAGGA
Statistics
Matches: 164, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 160 0.98
65 4 0.02
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.15
Consensus pattern (64 bp):
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
Left flanking sequence: Indices 335813 -- 336312
TCGAGTGCACTCGATTTAAGTGGTACGCACTCGATACTTGGAAACACAGAAAAGCATGGGCCGCG
ATCAGTTGTTGGGGTAGAGAGCCTATGCGCTAGACGTGCTTGTATGGTTCGGAGAGGACTCAGCG
TACACCGATCCTGTTGATTGGTGGCCTTATTCCAAATATCTTTCTCAGGAATATCACGATTTGCC
GTCTAAACCCTTTTCCCCCTGCCAGGTGGGTCCTCTTTTACCAGAGCCGCTAGGCGAGGCATTTT
AGCCTTTTTCCTTTCCTCTTCCGCGGTAGAATACTTGACTTTAAAGGTTCAGCAAGACGCAAAAA
CAAAAGCGAAGGCCAAGGGAGGCGCGAAAGCATGCCAAGCGCAGAAGGAGAAGCGGAAGCGCTAA
AGCCATGTAAGCTACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTC
AGAAGGAAGCACGAGAGCGTGCCAGGGTCCGCAGGACCACTCCGA
Right flanking sequence: Indices 336542 -- 337041
GAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGC
GCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTACCGGGAGGAC
AACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTACCGG
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGC
CCTTATTAGGTTCTATCAAATCAATGGAGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGA
GAGAATATTTCCGCTACGGGTAAAATACATGACTTTAAACGAAATACATGACTTTAAACGAAATA
CATGACTTTAAACGGGAAGGGGAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGC
AAAAGAGGAAGAAGGAAGGTGCTAAAGCGTAAGCTACGGAAGGAG
Found at i:336683 original size:22 final size:23
Alignment explanation
Indices: 336649--336692 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
336639 AAACACTTTT
*
336649 AACTGCCGGCCTACCGGGAGGAC
1 AACTGCCGACCTACCGGGAGGAC
336672 AACT-CCGACCTACCGGGAGGA
1 AACTGCCGACCTACCGGGAGGA
336693 GTGGGGGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (23 bp):
AACTGCCGACCTACCGGGAGGAC
Left flanking sequence: Indices 336149 -- 336648
GCCAAGGGAGGCGCGAAAGCATGCCAAGCGCAGAAGGAGAAGCGGAAGCGCTAAAGCCATGTAAG
CTACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTCAGAAGGAAGCA
CGAGAGCGTGCCAGGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACT
CCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACC
AGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
Right flanking sequence: Indices 336693 -- 337192
GTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCG
GGAGGAGTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAAT
CAATGGAGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGT
AAAATACATGACTTTAAACGAAATACATGACTTTAAACGAAATACATGACTTTAAACGGGAAGGG
GAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAGGAAGGTG
CTAAAGCGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAAAGGTAAA
TGCGGGAGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACCCAATACC
GCGTCACGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGC
Found at i:336743 original size:22 final size:22
Alignment explanation
Indices: 336715--336763 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
336705 GGTCCGAGGC
336715 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
336737 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
336759 GAGGA
1 GAGGA
336764 GTGGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 336215 -- 336714
TACGAAAGCGGCATAAGCGGAAGCAAAAGAGGAAAGGCACGGCAAGCGGTTTCAGAAGGAAGCAC
GAGAGCGTGCCAGGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGA
CCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCA
GCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTACCGGGAGG
ACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGGC
Right flanking sequence: Indices 336764 -- 337263
GTGGGGGGAGTTGGGCAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAATCAATGG
AGATGGCGGGCGGGGAGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGTAAAATA
CATGACTTTAAACGAAATACATGACTTTAAACGAAATACATGACTTTAAACGGGAAGGGGAAGCA
GAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAGGAAGGTGCTAAAG
CGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAAAGGTAAATGCGGG
AGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACCCAATACCGCGTCA
CGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGCCTAGGTTTTTTCCCCGGCAGGGGGAA
AAAAGCCACGGCCTTCCTTCCTTTTTCTTTCATCAGTCTTTTGAG
Found at i:336913 original size:19 final size:19
Alignment explanation
Indices: 336889--336945 Score: 114
Period size: 19 Copynumber: 3.0 Consensus size: 19
336879 GCTACGGGTA
336889 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
336908 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
336927 AAATACATGACTTTAAACG
1 AAATACATGACTTTAAACG
336946 GGAAGGGGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATACATGACTTTAAACG
Left flanking sequence: Indices 336389 -- 336888
GAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAA
GGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
AACTGCCGGCCTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAGG
CGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGG
CAGCAGAAGGGGAAGGCCCTTGCCCTTATTAGGTTCTATCAAATCAATGGAGATGGCGGGCGGGG
AGAAAGCCCAGGTTCCAGGAAGAGAGAATATTTCCGCTACGGGTA
Right flanking sequence: Indices 336946 -- 337445
GGAAGGGGAAGCAGAAGCAGGGCACTAAAGCGCTGCAGCGGAAACGGAAGCAAAAGAGGAAGAAG
GAAGGTGCTAAAGCGTAAGCTACGGAAGGAGGCGCAAGAGCTACAGCGAGGGAAGAAGGAGCGAA
AGGTAAATGCGGGAGAAGTTGCCGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGCCCCCCCACC
CAATACCGCGTCACGACCGATTAGTTCGCTACATGCTCAAAGTGTTCGAGGCCTAGGTTTTTTCC
CCGGCAGGGGGAAAAAAGCCACGGCCTTCCTTCCTTTTTCTTTCATCAGTCTTTTGAGTTCCGCG
AAGCGGAGACCGAAGTTATGCAATTGAATGAATACCATTCAGAAGACTCGGGGACATTCAACCAA
AGGCTCCCCCCAAACAGAGTCTATCGAACGAAGTCACGGCGGGACTGAGAAATAATCATGGCTAG
TAAACGGAGTACCGATTTACTCTCCTTCTGAATGAGACTATTCTT
Found at i:337972 original size:9 final size:9
Alignment explanation
Indices: 337958--337987 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
337948 TAAATTAAAT
337958 TCCAACTCC
1 TCCAACTCC
337967 TCCAACTCC
1 TCCAACTCC
337976 TCCAACTCC
1 TCCAACTCC
337985 TCC
1 TCC
337988 CTTCGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 337458 -- 337957
GACTCCAATTCTCTCTTCTTGCTGGAAAGCATTATTCGGAGGTTATTCCGAAGGGACCGAAGGGT
CCGAGCGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGGCAACAAATAATTCCGATAGG
GAGGAGTTGGATAACTACACTCCGATCGTCCATAATAGTCTTTTCATTAGGAATAGAACCTTGGT
GCCTTAATCATACAAGGGCACAGGGTTCGACCGAAGGGTCCGAGGCGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGAGAACAACTCCGACCGAAGGGAGGAGTTGGAAACGCTACGCGTTT
CCCTAGCGGCGGGGTGGCTTAGGCCACCCTGCACCCAGCCGAATCCAGTGGTTTCGGTTCATGCT
CAGCTCTCTTTCCGCTGGGGAGCAGCAGTTTAAATTAAATTAAAT
Right flanking sequence: Indices 337988 -- 338487
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGG
CAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGTAACCTTTAATT
TTCAATGAAATTAAATTAAAGTAAACTTAAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAC
CCTTTCTTTCTTTAAAGTACTTTAATTTTCAATTAAATTAAATTAAAGGCTAAAAATTTCTTACG
CGCTTTAAAGGGGCGGCACCCGGCCACGATTGTGTGTTCAGCTTCCACCCTTTCGGCGAGTACCC
GAGCTTTTTGGGGTAGTTTCCGAACCTTTTTTGAATAAATGACTGTTTTCGTAACCAATTCACAG
AACAGATCTGCGAACTGTATGGAATCATTATTGACTGGAATGGGA
Found at i:339608 original size:6 final size:6
Alignment explanation
Indices: 339588--339693 Score: 77
Period size: 6 Copynumber: 18.2 Consensus size: 6
339578 AATCGATTCC
* *
339588 ATTTCA ATTTC- --TTCA ATTTCA ACTTCA ATTTCA ATAAGTCA A-TTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA AT--TTCA ATTTCA
339634 ATTTCA A-TTCA ATAATTCA A--TCA A-TTCA ATTTCAA TATTTCA A-TTCA
1 ATTTCA ATTTCA AT--TTCA ATTTCA ATTTCA ATTTC-A -ATTTCA ATTTCA
339681 ATTTCA ATTTCA A
1 ATTTCA ATTTCA A
339694 CCTTCCTTTA
Statistics
Matches: 82, Mismatches: 4, Indels: 28
0.72 0.04 0.25
Matches are distributed among these distances:
3 3 0.04
4 4 0.05
5 18 0.22
6 41 0.50
7 2 0.02
8 14 0.17
ACGTcount: A:0.38, C:0.18, G:0.01, T:0.43
Consensus pattern (6 bp):
ATTTCA
Left flanking sequence: Indices 339088 -- 339587
GCAATAACCAGAACGTCTTCGTATAACTCTGAAGGGATATTGGAATCCGGAAATCTGTATCTATA
GCATGGTTTTTTGGTGGATAATTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTTCGGGCCCTAG
CCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTATTTCTGCATATAGTGACTTTTTCGCGC
ATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATGACTGTTTGCGCCGAAAGCCTTTAGAAT
AGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATCAGTAATGGTGAAGCGAATCCTGCAGCG
GATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGTAAATCATGAAACCAATAAATGATTGGT
GAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGATCAGTAAATCAGTCAATCGAACTGATC
TTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAATCGATTCC
Right flanking sequence: Indices 339694 -- 340193
CCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTTTAATT
TGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGA
AACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGC
TGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTC
TATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGG
GTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAG
GTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCC
TCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACGAAGTG
Found at i:339635 original size:19 final size:18
Alignment explanation
Indices: 339606--339688 Score: 74
Period size: 19 Copynumber: 4.9 Consensus size: 18
339596 TTCTTCAATT
339606 TCAACTTCAATTTCAATAA
1 TCAA-TTCAATTTCAATAA
339625 GTCAATTCAATTTCAAT--
1 -TCAATTCAATTTCAATAA
339642 TCAA-T-AA-TTC---AA
1 TCAATTCAATTTCAATAA
*
339654 TCAATTCAATTTCAATATT
1 TCAATTCAATTTCAATA-A
339673 TCAATTCAATTTCAAT
1 TCAATTCAATTTCAAT
339689 TTCAACCTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
12 4 0.08
13 4 0.08
14 4 0.08
15 4 0.08
16 4 0.08
18 1 0.02
19 28 0.53
20 4 0.08
ACGTcount: A:0.40, C:0.18, G:0.01, T:0.41
Consensus pattern (18 bp):
TCAATTCAATTTCAATAA
Left flanking sequence: Indices 339106 -- 339605
TCGTATAACTCTGAAGGGATATTGGAATCCGGAAATCTGTATCTATAGCATGGTTTTTTGGTGGA
TAATTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCT
TTCTGAGATGAACCTTCTTATTTCTGCATATAGTGACTTTTTCGCGCATAGTTACTCCCTCCCTT
ATACGTTCCTTGTATTAATGACTGTTTGCGCCGAAAGCCTTTAGAATAGTATTATTGTTAAATCG
GTGAATCCGTCAATGGAATCAGTAATGGTGAAGCGAATCCTGCAGCGGATCAGAAGCAAAGAAAG
TGTGGGAAGGGGGGCGCGGTAAATCATGAAACCAATAAATGATTGGTGAATCATTAAATCGGTCA
ATAGATTTTCAGTAAATTGATCAGTAAATCAGTCAATCGAACTGATCTTTAATCCGGGTAAGGTA
AATCGATTCAAAAATTCAATCGATTCCATTTCAATTTCTTCAATT
Right flanking sequence: Indices 339689 -- 340188
TTCAACCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTT
TAATTTGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAA
CGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCG
CCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAA
GATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCC
GTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCA
AGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCA
ACTCCTCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACG
Found at i:339678 original size:28 final size:27
Alignment explanation
Indices: 339626--339693 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
339616 TTTCAATAAG
339626 TCAATTCAATTTCAATTCAATAATTCAA
1 TCAATTCAATTTCAATT-AATAATTCAA
339654 TCAATTCAATTTCAA-T-AT--TTCAA
1 TCAATTCAATTTCAATTAATAATTCAA
339677 TTCAATTTCAATTTCAA
1 -TCAA-TTCAATTTCAA
339694 CCTTCCTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.13
24 4 0.11
25 13 0.34
27 1 0.03
28 15 0.39
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.43
Consensus pattern (27 bp):
TCAATTCAATTTCAATTAATAATTCAA
Left flanking sequence: Indices 339126 -- 339625
ATTGGAATCCGGAAATCTGTATCTATAGCATGGTTTTTTGGTGGATAATTCCAACTCCTCCCTAT
CGGTCGGAGTTGCCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTA
TTTCTGCATATAGTGACTTTTTCGCGCATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATG
ACTGTTTGCGCCGAAAGCCTTTAGAATAGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATC
AGTAATGGTGAAGCGAATCCTGCAGCGGATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGT
AAATCATGAAACCAATAAATGATTGGTGAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGA
TCAGTAAATCAGTCAATCGAACTGATCTTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAAT
CGATTCCATTTCAATTTCTTCAATTTCAACTTCAATTTCAATAAG
Right flanking sequence: Indices 339694 -- 340193
CCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTGTTGTTACTTTAATT
TGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGA
AACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGC
TGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTC
TATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGG
GTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAG
GTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCC
TCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGAACGAAGTG
Found at i:339744 original size:37 final size:37
Alignment explanation
Indices: 339703--339780 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
339693 ACCTTCCTTT
339703 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
1 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
339740 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
1 AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
339777 AAGT
1 AAGT
339781 ACTTTCAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (37 bp):
AAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTA
Left flanking sequence: Indices 339203 -- 339702
CCCTTCGGGCCCTAGCCGAGTATGGTTTTCCCTTTCTGAGATGAACCTTCTTATTTCTGCATATA
GTGACTTTTTCGCGCATAGTTACTCCCTCCCTTATACGTTCCTTGTATTAATGACTGTTTGCGCC
GAAAGCCTTTAGAATAGTATTATTGTTAAATCGGTGAATCCGTCAATGGAATCAGTAATGGTGAA
GCGAATCCTGCAGCGGATCAGAAGCAAAGAAAGTGTGGGAAGGGGGGCGCGGTAAATCATGAAAC
CAATAAATGATTGGTGAATCATTAAATCGGTCAATAGATTTTCAGTAAATTGATCAGTAAATCAG
TCAATCGAACTGATCTTTAATCCGGGTAAGGTAAATCGATTCAAAAATTCAATCGATTCCATTTC
AATTTCTTCAATTTCAACTTCAATTTCAATAAGTCAATTCAATTTCAATTCAATAATTCAATCAA
TTCAATTTCAATATTTCAATTCAATTTCAATTTCAACCTTCCTTT
Right flanking sequence: Indices 339781 -- 340280
ACTTTCAATAAAGAAAGGCTCAAGATTTCACGATTTAACGAGAAACCATTTACTGATTTCACGAT
CCGGCCGAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCT
TCCCTTCCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATA
CGGAGAACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACG
GGGTGCCCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGA
TAGGCGAGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTG
CCCTGTAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAA
Found at i:340220 original size:34 final size:34
Alignment explanation
Indices: 340177--340248 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
340167 GTTGCCCTGT
340177 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
1 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
340211 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
1 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
340245 AGGG
1 AGGG
340249 AGGAGGGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.29, C:0.28, G:0.35, T:0.08
Consensus pattern (34 bp):
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
Left flanking sequence: Indices 339677 -- 340176
TTCAATTTCAATTTCAACCTTCCTTTAAGTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAA
GTGTTGTTACTTTAATTTGAAATTAAATGAAATTAAAGTACTTTCAATAAAGAAAGGCTCAAGAT
TTCACGATTTAACGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCGTGCTTCTCTGG
AAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGAGAGGCGCCAGA
GAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGCCTTTTTGCCTG
GGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCCTTTGTTGGGCA
AGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTCGGAAAACCGCA
CTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGT
Right flanking sequence: Indices 340249 -- 340748
AGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTA
ATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATTTTCAATGAAATTAAATTAA
AGTAACCCCACTTTAATTTTCAATGAAATTAAATTAAAGTAACCTCGCCCGACCGAAGGGTCCGA
ACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGGGGGCCTTCGGCCC
CGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGTCCCGGCTTGTGCGGTGCATGAAG
GTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCTAGCGACCGGGGAGAGAATTTGAT
TCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGCCTATCATTTACTGATTCACCGAT
TTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAACAC
Found at i:340357 original size:43 final size:42
Alignment explanation
Indices: 340296--340420 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 42
340286 GCCGTCGCGA
340296 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACC-TAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
340339 AAACCTAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
**
340382 -AACC---CCA-CTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
340419 AA
1 AA
340421 CCTCGCCCGA
Statistics
Matches: 78, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
37 30 0.38
38 2 0.03
42 8 0.10
43 38 0.49
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (42 bp):
AAACCTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 339796 -- 340295
AGGCTCAAGATTTCACGATTTAACGAGAAACCATTTACTGATTTCACGATCCGGCCGAGGGCGCG
TGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTTCCTGGGCGA
GAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGAACCGCCTGC
CTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGCCCGCCTGCC
TTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCGAGAGTTTTC
GGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGTAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAG
GAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 340421 -- 340920
CCTCGCCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGG
AGTTGGCAGGGGGCCTTCGGCCCCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGT
CCCGGCTTGTGCGGTGCATGAAGGTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCT
AGCGACCGGGGAGAGAATTTGATTCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGC
CTATCATTTACTGATTCACCGATTTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAA
CACTACCATCAAGGAAGGAAAGACCACTAGTAGGGAGGATAGTGCTATCACTCTTCGGTGGAAAG
GCCGGGAAGTGGAGCTATCCATGGACAAAAAGAAGGGAAAGAGCGTAACAGCTGCCAGTGAGACA
ATTATGACGGCCGGGCCCACCAAAGTGGGAATCACACGGACAGTT
Found at i:340396 original size:37 final size:37
Alignment explanation
Indices: 340352--340422 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
340342 CCTAAGTAAC
340352 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
340389 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
340423 TCGCCCGACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.37
Consensus pattern (37 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
Left flanking sequence: Indices 339852 -- 340351
GAGGGCGCGTGCTTCTCTGGAAGAACTGCCCGCCTGCTGGGTAAGAGGAGAGAGAACCTTCCCTT
CCTGGGCGAGAGGCGCCAGAGAACTGGCGGAAGATTCTATGATACGCAATTGTTTGATACGGAGA
ACCGCCTGCCTTTTTGCCTGGGTGAGAAGGCCGTTGGGTGGGCGAGAGAAGAGAGAACGGGGTGC
CCGCCTGCCTTTGTTGGGCAAGGGAATAGGCAAGAAGGTGCCTTAAGGTGGGCGGAGGATAGGCG
AGAGTTTTCGGAAAACCGCACTTTACGGCCCAACTCCTCCCCATCGGAATTCGGAGTTGCCCTGT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGAC
CGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGA
ACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAAC
Right flanking sequence: Indices 340423 -- 340922
TCGCCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAG
TTGGCAGGGGGCCTTCGGCCCCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAGGCCGCCTCGTCC
CGGCTTGTGCGGTGCATGAAGGTACTTCTGAAACGAGATAGCCTCTCTCCAGATGCGTGCTCTAG
CGACCGGGGAGAGAATTTGATTCCGGAACGGAATGAAGGCTGGCTAACGGTCGCTTCCGTAGCCT
ATCATTTACTGATTCACCGATTTACTGATTACTGATTTCCTTCAAGAGCACCCTTCCGGACAACA
CTACCATCAAGGAAGGAAAGACCACTAGTAGGGAGGATAGTGCTATCACTCTTCGGTGGAAAGGC
CGGGAAGTGGAGCTATCCATGGACAAAAAGAAGGGAAAGAGCGTAACAGCTGCCAGTGAGACAAT
TATGACGGCCGGGCCCACCAAAGTGGGAATCACACGGACAGTTAG
Found at i:341582 original size:80 final size:80
Alignment explanation
Indices: 341432--341585 Score: 256
Period size: 80 Copynumber: 1.9 Consensus size: 80
341422 CTCCGACAGG
341432 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
1 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
341497 AGGAGTTGGTCCGAT
66 AGGAGTTGGTCCGAT
* * *
341512 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
1 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGAGGAGTGG
*
341576 GGGGAGTTGG
65 GAGGAGTTGG
341586 CCCTTTAAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
79 33 0.48
80 36 0.52
ACGTcount: A:0.26, C:0.24, G:0.38, T:0.12
Consensus pattern (80 bp):
AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGG
AGGAGTTGGTCCGAT
Left flanking sequence: Indices 340932 -- 341431
TTGTCCCCCTCCTTGTCCCGTTCATGGTACCGCCTACTGGTACCGCTACTGATAGCTATATCCCT
CCCTGGAGCGCTCAATCCGCGGAATTCCTTCTGATACGGAGTGACTGGCTGCCCCCAGCAAGGGA
GACAGATCTCATTTCAATGGCACAGTCTGCAGCAAGGGCGGGTCAAAAACCTTCTGCACCGCTTT
AAAAGGGGGACACTTTCTGTCGTTCATCGGTATTTCTTCTTTTGGGGGCCTTCTCTTAGGACAAA
GAAGAAAGGCCCACTCCCTTTAAAGCCGTTCTTGAAGGGAAGGTGGCTGAATGAAGCCGGCCGGC
ATGAGGGGACTTTTCATTCGTTATCCTTGAACGAACGAAGAAAAGGACCGGTAGAATACTTGACT
TTAAAGCTCCTATTTCTTCGATCAGCAAAAAGGGATTAGTCCTATCACCCACCCATAATTATTCG
TCAGCGGTTGGCTTGAAGAACAACCCTTCAGGGTCCTCCGACAGG
Right flanking sequence: Indices 341586 -- 342085
CCCTTTAAAGGAGCGCCGTCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCT
CCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCT
CCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAA
AAGAACTGAATTTTCAATGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAAGGG
AGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGA
AATTAAATTAAAGTAACCTCAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTC
CTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATA
GGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTAAATT
Found at i:341905 original size:35 final size:35
Alignment explanation
Indices: 341861--341929 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
341851 GCGGTTAATC
341861 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
341896 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
341930 CAGCGGCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 341361 -- 341860
TCCTATCACCCACCCATAATTATTCGTCAGCGGTTGGCTTGAAGAACAACCCTTCAGGGTCCTCC
GACAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGG
AGTGGGAGGAGTTGGTCCGATAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCTGAGTA
ATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGC
GGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 341930 -- 342429
CAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTC
CGAACGAAGTGAGGACAACGTAGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGTTAGGGAG
GAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGCTTTGAAGGAGTTGGCTTTAAGGGGCACT
AAAAACACGGAAGGCTTCCCGATGGGGGGATCCAGCCCCAGTCTGGGCGGCAGGGGCCACCCCTT
CCGGTTGGTTACACGTATGTTGCCAACCGCCACTCCGAGACCAAGGCAGAGATATATAGCATCTA
TATACGCGTTTCCGTGGTGCGCTCGCGGAGAACAACCCCATATTG
Found at i:344510 original size:33 final size:33
Alignment explanation
Indices: 344468--344532 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
344458 ATAGGGAGAG
*
344468 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
*
344501 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCG
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCG
344533 GTAGGCCGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.08, C:0.34, G:0.32, T:0.26
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 343968 -- 344467
GCCGGTTCTTGCCCCGTAGGATAATCGTAGGCAATTGACCTTATAGCCCGGCGCCTGCCCCCCCT
CGCTCCCAAGCTCTCATAGAGCGCTATCCACCCTAGCCTTCTATGAAAGCTCCTTAAAGCGCCTT
GGGGCTCCGGCCCCGCTCCATAGAGCGATACCCACCTGCCTACTGTCCTGGCCCACGCTGCTTCC
TCGGCCTCACTGAACTACTCTGACTCAATCTCATGGGTCGGGTGTAGGCAATTTCTCCCGGCAAG
GAGAGGAGGCATTTATGCGGCGTTAAAGTACGTGACTTTAAAAGGGTATAATATCAGCGCTTTCT
TTCCACAATCAGCGCCCCCGCAGTCCGAGTCCGCAGAGTGCGAACTATCAGAACGAATCCGATAG
TGTGTAATGTCCGAATGAGAGGTCGTCTCTTCGTATTCACGTCGTTTTGGCGGGGGAAGAAAACC
AACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 344533 -- 345032
GTAGGCCGGCAGGGGGCGCTATTTTTAACCCTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGT
ATTCTACCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTT
CGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAA
GTTTAAATTCAATTAAATTAAAGGTTCTTTGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGTC
CTCCTGTCGGAGGACCCTGCCAGGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGC
GCCCCCTGCCCCTGAAGCGCGTAGCGCTACCCTGCCCCTTATGCC
Found at i:344701 original size:34 final size:34
Alignment explanation
Indices: 344658--344730 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
344648 CTCCCCTCCT
344658 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
344692 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
344726 CCCTT
1 CCCTT
344731 TTAAAGAACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.08, C:0.34, G:0.27, T:0.30
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 344158 -- 344657
CTTCCTCGGCCTCACTGAACTACTCTGACTCAATCTCATGGGTCGGGTGTAGGCAATTTCTCCCG
GCAAGGAGAGGAGGCATTTATGCGGCGTTAAAGTACGTGACTTTAAAAGGGTATAATATCAGCGC
TTTCTTTCCACAATCAGCGCCCCCGCAGTCCGAGTCCGCAGAGTGCGAACTATCAGAACGAATCC
GATAGTGTGTAATGTCCGAATGAGAGGTCGTCTCTTCGTATTCACGTCGTTTTGGCGGGGGAAGA
AAACCAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCT
CACTTCGTTCGGACCCGCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGGTAGGCCGGCAGGGG
GCGCTATTTTTAACCCTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGTATTCTACCGGTTTTC
GCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCT
Right flanking sequence: Indices 344731 -- 345230
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAAGTT
TAAATTCAATTAAATTAAAGGTTCTTTGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTC
CTGTCGGAGGACCCTGCCAGGGCCAGGGCAGCGCTACGCGCTGCCCGCCGGGGGCGCGTAGCGCC
CCCTGCCCCTGAAGCGCGTAGCGCTACCCTGCCCCTTATGCCTTTGTACCTTTTGGGCAAGGGCA
CGGGAGGTTCAAGGGAATGAATTGACTGTCTATATGCGCACGCTAATGGAAATTCAATGCACCTA
CCATCTTGAACTTGGGCCAAGTGCCGATTTTGGGGAGGAATTAACCCTGACTGGGGCCAGGGTAG
CGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTACC
Found at i:349991 original size:27 final size:28
Alignment explanation
Indices: 349961--350022 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 28
349951 CGAAGGGTCC
*
349961 GAGG-CGAGGACAACTCCGACCTACCGG
1 GAGGTCGAAGACAACTCCGACCTACCGG
*
349988 GAGGAGTTGGAAGACAACTCCGACCTACCGG
1 GA-G-G-TCGAAGACAACTCCGACCTACCGG
350019 GAGG
1 GAGG
350023 AGTTGGGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
27 2 0.07
28 1 0.03
29 2 0.07
30 1 0.03
31 23 0.79
ACGTcount: A:0.27, C:0.27, G:0.35, T:0.10
Consensus pattern (28 bp):
GAGGTCGAAGACAACTCCGACCTACCGG
Left flanking sequence: Indices 349461 -- 349960
AAGCGGGCGGGCCACTAGCTACGCGCTTCCACTTTGGGGGCTAGTGGGAAGCGCAAAACATTTTT
TCAACCGCTTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTTCG
GAGGGCCCTTAAATTCAAAATTCAATGAAATTAATTTCAAATATTTTGAATTGTGGTGGTAACAC
GCTTCTATTTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTCTGCC
CACGAGTACGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCACGCAA
TACGACGAATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAAGAAG
CGTTACTTTAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCATTGAA
TTTAAATGGCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCC
Right flanking sequence: Indices 350023 -- 350522
AGTTGGGCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTA
GCCTACTCCTTTAAACCCCACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGTC
CTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTGTATTC
TCCCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCG
CCCCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACA
TAATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACG
GCACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCA
GCAGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGT
Found at i:350004 original size:31 final size:31
Alignment explanation
Indices: 349969--350028 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
349959 CCGAGGCGAG
349969 GACAACTCCGACCTACCGGGAGGAGTTGGAA
1 GACAACTCCGACCTACCGGGAGGAGTTGGAA
350000 GACAACTCCGACCTACCGGGAGGAGTTGG
1 GACAACTCCGACCTACCGGGAGGAGTTGG
350029 GCAACTTCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.33, T:0.13
Consensus pattern (31 bp):
GACAACTCCGACCTACCGGGAGGAGTTGGAA
Left flanking sequence: Indices 349469 -- 349968
GGGCCACTAGCTACGCGCTTCCACTTTGGGGGCTAGTGGGAAGCGCAAAACATTTTTTCAACCGC
TTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTTCGGAGGGCCC
TTAAATTCAAAATTCAATGAAATTAATTTCAAATATTTTGAATTGTGGTGGTAACACGCTTCTAT
TTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTCTGCCCACGAGTA
CGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCACGCAATACGACGA
ATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAAGAAGCGTTACTT
TAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCATTGAATTTAAATG
GCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCCGAGGCGAG
Right flanking sequence: Indices 350029 -- 350528
GCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTAGCCTAC
TCCTTTAAACCCCACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGTCCTAAAG
TCATGTATTTTACCTAAAGTCATGTATTTTACCTAAAGTCATGTATTTTACCTGTATTCTCCCGC
CTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCGCCCCGT
TTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACATAATAC
GAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACGGCACAT
GACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCAGCAGAT
TGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGA
Found at i:350176 original size:19 final size:19
Alignment explanation
Indices: 350152--350211 Score: 120
Period size: 19 Copynumber: 3.2 Consensus size: 19
350142 GGTTTAAAGT
350152 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
350171 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
350190 CCTAAAGTCATGTATTTTA
1 CCTAAAGTCATGTATTTTA
350209 CCT
1 CCT
350212 GTATTCTCCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (19 bp):
CCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 349652 -- 350151
ACACGCTTCTATTTACGTGTTTCTTCCCCCACGAATTAGGTGGTTCGGTCTAGGCAGGCTGGTTC
TGCCCACGAGTACGAGCTCCCGCCTCTGCGCTAGCACATTCCGACTCCAGGAATGAGCGGTCCAC
GCAATACGACGAATCGGGTGGCAGAACCCTTTAGGCTATGCCCAAGAGCTGTTGGAGGGAGCGAA
GAAGCGTTACTTTAAATAATTTCATTTCATTGAAAATTAATTTCAAACGACTACTTTAATTTCAT
TGAATTTAAATGGCCGAAGGCCACCCTGCCCGAAGGGACCGAAGGGTCCGAGGCGAGGACAACTC
CGACCTACCGGGAGGAGTTGGAAGACAACTCCGACCTACCGGGAGGAGTTGGGCAACTTCCGCCC
CCCACACCACCACCCCGAAGTGGTGGGGGGCGGAAGTTGGGCTTTAGCCTACTCCTTTAAACCCC
ACCCTTTGAAGCCTAAGGTGGGTAGGGAGTTGGGCGGTTTAAAGT
Right flanking sequence: Indices 350212 -- 350711
GTATTCTCCCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCA
GGCCCGCCCCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGA
TGGACATAATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCA
GCGACGGCACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAA
CACCCAGCAGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGAAGACCACA
ACAATTGCGGGAAAGGCAGTGTGGAAACTGGGCCAGTATTCACTTATCTAGGGTCCTCCGACAGG
AGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTC
GAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
Found at i:350732 original size:9 final size:9
Alignment explanation
Indices: 350720--350748 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
350710 CCGACCGAAG
350720 GGAGGAGTT
1 GGAGGAGTT
350729 GGAGGAGTT
1 GGAGGAGTT
350738 GGAGGAGTT
1 GGAGGAGTT
350747 GG
1 GG
350749 TCATTTACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 350220 -- 350719
CCGCCTCCGGTTAAAACCCACTTAGCCCGCCCTAGCGAACCATAGCAAAGGTATGCAGGCCCGCC
CCGTTTCGGAGAGTGCCGGGGCGGCCAGGCTAGCAGATCGGTCTTTGCCCCGGCTGATGGACATA
ATACGAAGCACGGAAAGGAGGGCTAGAATAAGCCCAGCATAGCGAATTAGAGCCGCAGCGACGGC
ACATGACAGCTCAGAGCCCTGAACCCTATTTGCAGGGTGACCTGAATCGAATGCTAACACCCAGC
AGATTGCGGCCTAAGGCAGGCCAACCACAGCAGCACCACGGGTGATGGAAGACCACAACAATTGC
GGGAAAGGCAGTGTGGAAACTGGGCCAGTATTCACTTATCTAGGGTCCTCCGACAGGAGGACAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 350749 -- 351248
TCATTTACCGTTTGAACCGAAGGAACGGGCGCCCGGCTGGCCACCACCTGCCGCGCTTCGCGCGT
TTTCCTGGCCGATAGGCACTTCTAAGAAGAACGACAAGCTCGAAGGAAAGGATATAGTAGTAGCC
GGGGCGGCTAGTCAATACCTACACCTACAGGAAGAGTCATAGGCTTAGTAGGGCTCGAACCTACA
ATATCACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCTTTAGAGCCAGCCCTAT
GCTCCGAGCAAGATAGGAAACGGATTTGTCGAAGGCTAGAAGCGTCTCCGAAACTTCCCCTTCCT
CTCTCTTCGAAAAAGGGCGAGGTTGTCCTTTGGGCCAGCCCTAGGCTGGGCTACAGCCCACCCTG
CCGCCTCGCCGGCACTCGACCAACGGGAGGGGATCACGTGTCGAGATTCGACCTTTAAAGGCACA
TTCTTTCGGATTTGAGACAGATGGCTCTGACCCGGGTAGGATGGG
Found at i:357111 original size:34 final size:34
Alignment explanation
Indices: 357067--357137 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
357057 CCCCACTCCT
* *
357067 CCCTTTGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
357101 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
357135 CCC
1 CCC
357138 CTTTTAAAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.08, C:0.34, G:0.27, T:0.31
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 356567 -- 357066
ACGTGCCAACTAGTTCTCGCGCTACTTTAAAAAGGGCATTTCCGCTCACTCGAATTGACGCTTAT
TCTATTCAAATTCGTGGGGAAGCTTCAGTATGCGCTACTAGTGGTGGTTTAATTTAATTTAAACT
CCCGTAGCGGATTGATGAAGGCGCTTATTCTACTCAGATTCTTCGTGTGTTACTGGTCGCTGCCT
AGTGGTCGCTACGTGCTACTCGTGATCCGGAAGTATGCGCCTTTTAAAAGGGCTTCGCTGGTACC
GGCGAATAAAATGCTATGTGCCCACCTTCATTTGCCACTAAGTGCCGGGGCTGAACAGCTTAGGT
ACCCCCGCCTAGTGGCGTGCCTATAGGGGTACGTGGCACTTTTTAAAGGGGCGCCTAGCACTTCT
TCCGAAATGCGTGTTACGCGTTTAGTGTGTGTCTCGCTACGCGCTTTAACCTAACTAAGAAAGCA
AGGCCGACTTTAAAGGGCCAACTCCCCCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 357138 -- 357637
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
TGTCCTCCTGTCGGAGGACCCTGCCAGGCAGGGGGCCGAAGGCCCCCCTGCCCTACGGGCCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGA
CTTCTATTCGTACCTGCACCAAGAGCTGCCAGAGTTCCGAAAGCCTAGGCTAGATCCGACCGATA
CATTACCACCATGAAACTACTGACACGTAAATTGGTCAGCTTTTTATGCCGCTAGTCTATGGGAA
GCCCGGCAGGGGCGGCTTGGGTATTGATATCCGAGATGCCGCTAA
Found at i:358472 original size:46 final size:42
Alignment explanation
Indices: 358375--358474 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 42
358365 CCCCCGGGCT
*
358375 GGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 GGCCAACTCCTCCCTCTCGGAATTCGGAGTGCTCCTATCGGA
358417 --CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGA
1 GGCCAACTCCTCCCTCTCGGAATTCGGAG-TG--CTCCTATCGGA
358460 GGGCCAACTCCTCCC
1 -GGCCAACTCCTCCC
358475 ACTCCTCCCT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
40 27 0.53
41 2 0.04
43 10 0.20
46 12 0.24
ACGTcount: A:0.16, C:0.39, G:0.22, T:0.23
Consensus pattern (42 bp):
GGCCAACTCCTCCCTCTCGGAATTCGGAGTGCTCCTATCGGA
Left flanking sequence: Indices 357875 -- 358374
GGAGTTGGTTCAAAGTCGCTACTTTAAACCCCCCTAATAAGGGGTGGGGGGCCTCCGGCCCCCCC
CCGGGCCCTTCCGGGCCAGCCTCGGCCGGCAAGGCCAACTCCCCTAACTCCTCCCGCCACGGCCT
TTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAG
CGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGGA
GGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGCGCAGCACTTGTCTAGTCTTTATGCATCA
TCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCCCACCTCCAAGAGAGAGAAGAAGGCGGGA
GAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGGATAGCAGCATCGCATTGGGAATTGACTC
GTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCCCCCGGGCT
Right flanking sequence: Indices 358475 -- 358974
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCTCCAACTCCTCCCA
CTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCC
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGG
CCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGAT
GCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAA
Found at i:358507 original size:21 final size:21
Alignment explanation
Indices: 358477--358549 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 21
358467 CTCCTCCCAC
*
358477 TCCTCCCTTCGGTCGGAGTGG
1 TCCTCACTTCGGTCGGAGTGG
*
358498 TCCTCACTTCGTTCGGA----
1 TCCTCACTTCGGTCGGAGTGG
*
358515 CCCT-A--TCGGTCGGAGTGG
1 TCCTCACTTCGGTCGGAGTGG
*
358533 TCCTCACTTCGTTCGGA
1 TCCTCACTTCGGTCGGA
358550 CCCTATCGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
14 8 0.21
16 1 0.03
17 3 0.08
18 3 0.08
19 1 0.03
21 23 0.59
ACGTcount: A:0.10, C:0.33, G:0.27, T:0.30
Consensus pattern (21 bp):
TCCTCACTTCGGTCGGAGTGG
Left flanking sequence: Indices 357977 -- 358476
ACTCCCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCC
ACTTTAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGC
GCAGCACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCC
CACCTCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGG
ATAGCAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCC
CCCGGGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCT
CGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCAC
Right flanking sequence: Indices 358550 -- 359049
CCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCTCCAACTCCTCCCACTCCTCCCTT
CGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGA
GTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGC
CAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGATGCTCGTATCT
TCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAATCGGCCAATGAGCAACCAACCTTTCTAAGG
CGAGTGGATAATCGATACTTCCATAACACCCAGCATGCCGTGCCC
Found at i:358525 original size:35 final size:35
Alignment explanation
Indices: 358481--358700 Score: 232
Period size: 35 Copynumber: 6.6 Consensus size: 35
358471 TCCCACTCCT
358481 CCCT-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
358515 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
**
358550 CCCTATCGGTCGGAGTGGTCCTC-CTTCG-GAGG-
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
* * * ** * ** *
358582 GCCAACTC-CTCCAACTCCTCC-CAC-TC---C--T
1 CCCTA-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
358610 CCCT-TCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
358644 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
*
358679 CCCTATCGGTCGGAGTTGTCCT
1 CCCTATCGGTCGGAGTGGTCCT
358701 TCGGACCAAC
Statistics
Matches: 152, Mismatches: 21, Indels: 25
0.77 0.11 0.13
Matches are distributed among these distances:
26 2 0.01
27 7 0.05
28 5 0.03
29 2 0.01
31 3 0.02
32 12 0.08
33 4 0.03
34 13 0.09
35 104 0.68
ACGTcount: A:0.11, C:0.35, G:0.26, T:0.28
Consensus pattern (35 bp):
CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 357981 -- 358480
CCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTC
ACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTT
TAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAGGAGTTGCCCGAGGCGCAG
CACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTTTTTCCTAATTATCCCACC
TCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTAGGATCGTCGAACGGATAG
CAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGGGGGCCTCCGGCCCCCCCG
GGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGACCAACTCCTCCCTCTCGGA
ATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCT
Right flanking sequence: Indices 358701 -- 359200
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGCCAGCCTCGGCCTTCCACTCAC
CACTTTTGTCGAAGGATAGAACCTGGCTAATGATGCTCGTATCTTCTTCCCCAAATCCTCTCCTC
TTTCCGAGATGGAATCGGCCAATGAGCAACCAACCTTTCTAAGGCGAGTGGATAATCGATACTTC
CATAACACCCAGCATGCCGTGCCCCGGCTGGGGACCCGGGTAAAGCGCTACGCGCTTTCCACTTC
AGAATTTCACTTCTATAAAAAGGGGAAGCGCGTATAAAAAGGGGAAGCGCTACGCGGAAAAGAAA
AGAAAAGGAGGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTA
Found at i:358625 original size:129 final size:123
Alignment explanation
Indices: 358463--358774 Score: 536
Period size: 129 Copynumber: 2.5 Consensus size: 123
358453 TATCGGAGGG
358463 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
358528 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCCTTCGGAGGGCCAACTCCT
66 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGT--T-CTCCTTCGGA---CCAACTCCT
358592 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
*
358657 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
66 AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTCTCCTTCGGACCAACTCCT
* *
358715 CCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
1 CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
358775 CCTTTAGGCA
Statistics
Matches: 180, Mismatches: 3, Indels: 7
0.95 0.02 0.04
Matches are distributed among these distances:
122 4 0.02
123 63 0.35
126 9 0.05
127 1 0.01
129 103 0.57
ACGTcount: A:0.12, C:0.38, G:0.23, T:0.27
Consensus pattern (123 bp):
CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTCTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 357963 -- 358462
GGCCGGCAAGGCCAACTCCCCTAACTCCTCCCGCCACGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATCTAATTTCAAT
GAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGGAGGGCAACTCCGACCTACCGGGAG
GAGTTGCCCGAGGCGCAGCACTTGTCTAGTCTTTATGCATCATCCTCCCCGATACTTGTAGAGTT
TTTCCTAATTATCCCACCTCCAAGAGAGAGAAGAAGGCGGGAGAGGTGGGGTGACATCAGAAGTA
GGATCGTCGAACGGATAGCAGCATCGCATTGGGAATTGACTCGTCGCACGAAATGAAGGGGTGGG
GGGCCTCCGGCCCCCCCGGGCTGGCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGAC
CAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGG
Right flanking sequence: Indices 358775 -- 359274
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGG
TCGGAGTGGCCCTCCTATCGGAGGGCCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGT
CGAAGGATAGAACCTGGCTAATGATGCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGA
TGGAATCGGCCAATGAGCAACCAACCTTTCTAAGGCGAGTGGATAATCGATACTTCCATAACACC
CAGCATGCCGTGCCCCGGCTGGGGACCCGGGTAAAGCGCTACGCGCTTTCCACTTCAGAATTTCA
CTTCTATAAAAAGGGGAAGCGCGTATAAAAAGGGGAAGCGCTACGCGGAAAAGAAAAGAAAAGGA
GGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTACGAGCGGGCTGAGGCGATCGATAGTGATT
GTCAACTATACTGCTAAGGAGACTCGATTGATAGTTCGAAGAAGC
Found at i:359128 original size:19 final size:19
Alignment explanation
Indices: 359104--359140 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
359094 ATTTCACTTC
359104 TATAAAAAGGGGAAGCGCG
1 TATAAAAAGGGGAAGCGCG
359123 TATAAAAAGGGGAAGCGC
1 TATAAAAAGGGGAAGCGC
359141 TACGCGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.35, T:0.11
Consensus pattern (19 bp):
TATAAAAAGGGGAAGCGCG
Left flanking sequence: Indices 358604 -- 359103
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTC
CCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGG
GCCCTTTGGGCCAGCCTCGGCCTTCCACTCACCACTTTTGTCGAAGGATAGAACCTGGCTAATGA
TGCTCGTATCTTCTTCCCCAAATCCTCTCCTCTTTCCGAGATGGAATCGGCCAATGAGCAACCAA
CCTTTCTAAGGCGAGTGGATAATCGATACTTCCATAACACCCAGCATGCCGTGCCCCGGCTGGGG
ACCCGGGTAAAGCGCTACGCGCTTTCCACTTCAGAATTTCACTTC
Right flanking sequence: Indices 359141 -- 359640
TACGCGGAAAAGAAAAGAAAAGGAGGTGCGAAGGGAAGGAACGATTGAGACAAAGAAGTACGAGC
GGGCTGAGGCGATCGATAGTGATTGTCAACTATACTGCTAAGGAGACTCGATTGATAGTTCGAAG
AAGCCTGGAGTTTATCGCCCGGGTTCTTCTCCAGTTCCTTAACTTCAGTGAGCAAAGGTACCGCC
CCCATGGAAGGGCAGCCCCGAACGAAGGCCTGCATCTTCATCGATGCCGACCCGGTCTCAGGCTG
GTGCTCAACAACCGGCTGAATGAATGGCAGGGGGGCGCGTTAGCGCCCGGGCAGCCTGGCAGGCT
GCCCTGCCGATTTTCTATAGCCAAAGAAGCACTCGAAGCCTGGGTCGAACCATTGGTCACTTATC
CGCTCGTTCTTAGCACTGAAGAAGAATAAGTCTCATGTCCCTTAACCGACGATGCATGTTTAGTT
TTGTTCAACCTCTTAACGAGCTGATGTTTCCACGACAGAGATAAG
Found at i:360778 original size:26 final size:27
Alignment explanation
Indices: 360730--360780 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
360720 AGTGAGGACC
360730 ACTCCGACCTACCGGGAGGAGTTGGCA
1 ACTCCGACCTACCGGGAGGAGTTGGCA
360757 ACTCCGACCTA-CGGGAGGAGTTGG
1 ACTCCGACCTACCGGGAGGAGTTGG
360781 TCCTCCTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.16
Consensus pattern (27 bp):
ACTCCGACCTACCGGGAGGAGTTGGCA
Left flanking sequence: Indices 360230 -- 360729
TTTTTGCCCGAAAGTGGAAAGCGCTACGCTCCGCCCCCTTGCTGGGGCCAGGGGACCTTCTTGTC
TCAAAATTCGAATGAGGGGTAAGGGGGAGAAGAGCGGAAGTGGGTTCAAAAAGGAGGAGGAGCTT
CTAGCGAGAAAGGAAGGCCGAGACTACTGACCTTTCAAGCCTTTTAAAAAGTTCCTCCTGTTTCG
GAATCCGCCTGATCAGCCTCCTGGGAATTGATCACGGGAATCTATCCTGCACTACTCACTGCTTT
GATTCTTACTGAGACAAAATGGCTTCAGACAACGACAGAGAATTTCACATCAGGGTCCAAGCGAA
GCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAAGCCTTAAATTGAATTGAAACT
AAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACC
Right flanking sequence: Indices 360781 -- 361280
TCCTCCTAAGGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGG
GAGGAGTGGGGGGAGTTGGCCCGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGACCTAC
GGGAGGACAACTCCGACCGAGGGGAGGAGTTGGCAGGGGCCCCCTAAGGGCCGGCAAGGCCCCCT
GCCCAACTCCGACCGATAGGGAGGAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGAGGGGA
GTTGGGCATGAAGGGGGAGGTCTAAGTGGAGATTTTGGATCCACTAACGCCAAGTGATGACCGGA
AGTGACCAAGGGCAGGGGGCCGAAGGCCCCCCTTTAAAGGGGCCGAAGGCCCCCTGCCCTCCGGC
AGGAGGGCAACTCCGACCTACCGGGAGGAGTTGGATTGTTAATAACCTTTAATTTTCAATGAAAT
TAAATTAAAGTGAGAGCTGTTGTATATGGCACGTTGATGGTCCTA
Found at i:362173 original size:35 final size:34
Alignment explanation
Indices: 362129--362289 Score: 250
Period size: 35 Copynumber: 4.6 Consensus size: 34
362119 CCTCCGATAG
*
362129 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
362164 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
* *
362198 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
* *
362233 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
362268 GAGGACCACTCCGACCGAAGGG
1 GAGGACCACTCCGACCGAAGGG
362290 AGGAGTGGGA
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
34 36 0.30
35 84 0.70
ACGTcount: A:0.27, C:0.32, G:0.32, T:0.10
Consensus pattern (34 bp):
GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 361629 -- 362128
CCTGTCAATTGCACACCTCAACATTTGCCACCCAGCCTGGATCTAGATATGCATCCTAAGGTGCA
GTGCCAGTTGTTTACTTTTCTTCAGTTGAATCAGCCTAAGAACCTTTAATTTTCAATGAAATTAA
ATTAAAGTAACCCCAGGCATTTGATCCAGTTGACTGAGCAAAAGCATCACCCTACGGGGCGGCCT
TTTATCACCCACAACCATAGCATGACGCTCACCGGCTTCACGACATCCACTTGTCGCGTGTGAAT
GAGTCTAGGGCCGGGCGTTATCCAATGACCCGGGTGGATTCATACCCTGTTCCAGAAGCAAGGAC
AGTTGACCGGGGATCAGTGGCAGAGGCAGTTCGAAAGCGCCGGGGTAATGAGTTAAAGCAGCAGT
TACCTAATAAGTAGCACTAAAACCAAAAAGTCGGACTCTTTTTCACAGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 362290 -- 362789
AGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCG
CTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGG
ATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTG
GTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAG
ATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACC
TGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCC
TTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTAA
TTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATT
Found at i:362245 original size:69 final size:70
Alignment explanation
Indices: 362129--362289 Score: 254
Period size: 69 Copynumber: 2.3 Consensus size: 70
362119 CCTCCGATAG
* *
362129 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGTCCGAAC
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
362193 GAAGT
66 GAAGT
* * * *
362198 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAAC
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
362263 GAAGT
66 GAAGT
362268 GAGGACCACTCCGACCGA-AGGG
1 GAGGACCACTCCGACCGACAGGG
362290 AGGAGTGGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
69 51 0.61
70 32 0.39
ACGTcount: A:0.27, C:0.32, G:0.32, T:0.10
Consensus pattern (70 bp):
GAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAAC
GAAGT
Left flanking sequence: Indices 361629 -- 362128
CCTGTCAATTGCACACCTCAACATTTGCCACCCAGCCTGGATCTAGATATGCATCCTAAGGTGCA
GTGCCAGTTGTTTACTTTTCTTCAGTTGAATCAGCCTAAGAACCTTTAATTTTCAATGAAATTAA
ATTAAAGTAACCCCAGGCATTTGATCCAGTTGACTGAGCAAAAGCATCACCCTACGGGGCGGCCT
TTTATCACCCACAACCATAGCATGACGCTCACCGGCTTCACGACATCCACTTGTCGCGTGTGAAT
GAGTCTAGGGCCGGGCGTTATCCAATGACCCGGGTGGATTCATACCCTGTTCCAGAAGCAAGGAC
AGTTGACCGGGGATCAGTGGCAGAGGCAGTTCGAAAGCGCCGGGGTAATGAGTTAAAGCAGCAGT
TACCTAATAAGTAGCACTAAAACCAAAAAGTCGGACTCTTTTTCACAGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 362290 -- 362789
AGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCG
CTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGG
ATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTG
GTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAG
ATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACC
TGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCC
TTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAACCTTTAA
TTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAATT
Found at i:362783 original size:43 final size:38
Alignment explanation
Indices: 362739--362887 Score: 212
Period size: 37 Copynumber: 3.8 Consensus size: 38
362729 CCGTAAGAAC
*
362739 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACC----CAA
*
362781 CCTTTAATTTTCAATGAAATTAAATTAAAGT-AACCCCA
1 -CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
*
362819 CTTTAATTTTCAATGAAATTAAATTAAAGT-AACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
362856 CTTTAATTTTCAATGAAATTAAATTAAAGTAA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAA
362888 CCTCAGCGGC
Statistics
Matches: 103, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
37 67 0.65
38 2 0.02
42 4 0.04
43 30 0.29
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (38 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAAACCCAA
Left flanking sequence: Indices 362239 -- 362738
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCGGTCAATCGCTTATTCAATGGGT
GGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAAATGGAAGGATTCACTGAGCCGA
ATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTGTTCCTGTGGTTTGTTTCGAGGT
GTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGAGTTTCTAGATCTCACCTTTTGG
GTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTGTCTCTACCTGCTCCACCACGGC
GGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCCTTATTGGGAGGGCT
TTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGAAC
Right flanking sequence: Indices 362888 -- 363387
CCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGAC
AACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAA
GTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAG
GCCCCAACGATGGGTGGTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAG
AGGGGAAAGGCTAGACCTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAA
AAGGCGGAGGTAATAATCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACG
CAGTGAAACTTTGGGGTGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTC
CGACCAAAGGGAGGAGTGGGGGGAGTGGGGGGAGTTGGCCAGCCT
Found at i:362826 original size:37 final size:37
Alignment explanation
Indices: 362782--362889 Score: 216
Period size: 37 Copynumber: 2.9 Consensus size: 37
362772 CCTAAGTAAC
362782 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
362819 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
362856 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
1 CTTTAATTTTCAATGAAATTAAATTAAAGTAACC
362890 TCAGCGGCCG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.36
Consensus pattern (37 bp):
CTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCA
Left flanking sequence: Indices 362282 -- 362781
CCGAAGGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCG
GTCAATCGCTTATTCAATGGGTGGTGCTTCTGCCAAAGCTTCTGACTGTGATGCTCGCTCTCGAA
ATGGAAGGATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAAGTATGAATCTCTG
TTCCTGTGGTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAATAGGTGTAAAGAGA
GTTTCTAGATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTCGACTCTTCCTCTG
TCTCTACCTGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCCGGTAGGTCGGAGT
TGCCCTCCTTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGTAAGA
ACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAAC
Right flanking sequence: Indices 362890 -- 363389
TCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAGGC
CCCAACGATGGGTGGTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAGAG
GGGAAAGGCTAGACCTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAAAA
GGCGGAGGTAATAATCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACGCA
GTGAAACTTTGGGGTGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTCCG
ACCAAAGGGAGGAGTGGGGGGAGTGGGGGGAGTTGGCCAGCCTCG
Found at i:362945 original size:33 final size:34
Alignment explanation
Indices: 362899--362968 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 34
362889 CTCAGCGGCC
*
362899 GGGTCCGAGCGAAGCGAGGACAACTCCG-CCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
*
362932 GGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
362966 GGG
1 GGG
362969 AGGAGTGGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 26 0.76
34 8 0.24
ACGTcount: A:0.29, C:0.27, G:0.37, T:0.07
Consensus pattern (34 bp):
GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
Left flanking sequence: Indices 362399 -- 362898
GCTCGCTCTCGAAATGGAAGGATTCACTGAGCCGAATATAGCTACCTTCCAATCTATGGTGGAAA
GTATGAATCTCTGTTCCTGTGGTTTGTTTCGAGGTGTATGGGAAGGAGTGATGTTCTTTGTTAAT
AGGTGTAAAGAGAGTTTCTAGATCTCACCTTTTGGGTTCTTCTAAAGCAGGCCAGAAATGAGGTC
GACTCTTCCTCTGTCTCTACCTGCTCCACCACGGCGGAATTGATTCATTGATTCCAACTCCTCCC
GGTAGGTCGGAGTTGCCCTCCTTATTGGGAGGGCTTTAAAGGGCCCTTTAAAGGAGCGCCGTCGC
GAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAAGTAACCTTTAAT
TTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAATTAAAGTAACCC
CACTTTAATTTTCAATGAAATTAAATTAAAGTAACCTCAGCGGCC
Right flanking sequence: Indices 362969 -- 363468
AGGAGTGGGGGGAGTTGGCCACAAATAATTCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCTACCGGGAGGAGTGGGGGGAGTTGGAATGCGCGAGTGTGTGTCTCAGGCCCCAACGATGGGTG
GTGACCGAGGTTGAGAAGGGGTGGATCCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGAC
CTGAGTACCTTCCAACAATGGCGTAAAAAGCGCATATGTATATTAGGAAAAGGCGGAGGTAATAA
TCTGTTCAGGTATTGATCTCTCATCTGAGCACGTACGAACGTAACGACGCAGTGAAACTTTGGGG
TGGGGGGCCTCCGGCCCCCCCCGGGCCCAAAGGGTCCGAAGGACAACTCCGACCAAAGGGAGGAG
TGGGGGGAGTGGGGGGAGTTGGCCAGCCTCGGCCTGCTCTAAAGGGCGGCGAAGTAGTGTGTTTC
GGAGGTTTCCGAAGTAGAGTATGCGCGTGAATATACGGCCAGACT
Found at i:365623 original size:22 final size:23
Alignment explanation
Indices: 365589--365632 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
365579 AAACACTTTT
*
365589 AACTGCCGGCCTACCGGGAGGAC
1 AACTGCCGACCTACCGGGAGGAC
365612 AACT-CCGACCTACCGGGAGGA
1 AACTGCCGACCTACCGGGAGGA
365633 GTGGGGGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (23 bp):
AACTGCCGACCTACCGGGAGGAC
Left flanking sequence: Indices 365089 -- 365588
GCTCTTTTCTTTTTTTCCGCATCAACCCTCCTGATTCCTGAAATTCTGGTAGTAAGTTAAGCTGT
AGTGGCCGGCCCTAGTGGCTGAGGGGGGGGGGGGAGATAAAGGGAAGGGGAAGGTAAGGGGGAGG
GTCAGAATGGCCGAGCATTTGGTACTCACTCCGTGTCCTCCATTCAGGGTCACCAGATGGAACCA
AAGCAAAACTAAACCGATAGTTGGTAGCACGAACAGAGAGTAATTAAGCTCTTTTAAAGGTCCAA
CCCACTTATTTATTCACCCTTCGTGGGGCCAGCTTCTAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACC
AGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTT
Right flanking sequence: Indices 365633 -- 366132
GTGGGGGGAGTTGGAAGACAACAAATAATCCCTAGGGAGGGCTTTTAAAGGGTCTGATAAACGCA
ACTCAATCTACCACCCACTTTAAAGGGGCTGATTGATTGCAAAAATCACTATATAGAATCAAATC
TCGGCTTCCTCTTGAGCGGTTTCCCCCCATACCGCAGCAGCTACAGGTTCCGCTGGATCCCGCCC
GGTTCATCGACGATTCCATGGGATCTCACTGCGCCCCACGTAGGGGCGAGGACGCCTCTTTCTGG
GCGTTTCAATTAATTTTAAATTAAAGTAAATTAAAGGGTCCCTCCGATCGGATTTCTGAAGGAAG
GGTGAACAAAACTAGTCCGACGTCTCTCCAGGAGCGGAATAAACGGAGGGACATACACACACATA
TATAGATCTATGTGTGTAGAATACTTGGTCGGGGACGGAGGAACCTGCCATGAATGATACAAGGA
ACCCCCCCTTCTATTGGGGGGAAGGAACAAAAAGAGACGTTCCAT
Found at i:367504 original size:29 final size:30
Alignment explanation
Indices: 367453--367512 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
367443 AACTCCCCCC
*
367453 ACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCA
1 ACTCCTCCCTTCGG-A--CGGAGTGGTCCTCCA
367486 ACTCCTCCCTTCGG-CGGAGTGGTCCTC
1 ACTCCTCCCTTCGGACGGAGTGGTCCTC
367513 GCTTCGCTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 12 0.46
33 14 0.54
ACGTcount: A:0.12, C:0.38, G:0.22, T:0.28
Consensus pattern (30 bp):
ACTCCTCCCTTCGGACGGAGTGGTCCTCCA
Left flanking sequence: Indices 366953 -- 367452
GATAGATGTAGGCCATCTCCTCTGTTTACTCCCCTCCCTCACAAAGGCACCTCCCGAGATTCGGT
ATGTATTCCGATCCGATCAACTATAGATAGAAATGGTAGCTCACCGGGATTGAGAGGATTTGGTG
GAAACAACAAACGTGGCTCGTTCGACCCGGTGGATTCAAGCTCCATCCCGCCAATCGACTTTTTA
GTGGAAAACAGCTCCAAACATGGACAAGAGTTACTTCTGTTTTGTTTCTTGGCAGCAGTTGATTC
TAATTACGTATCAAAGAGGTGGCTTCTTTTTGGGTTAAGTCTAGGTTGATTCATTGATGGTTCCA
CAGCAGCAAGGTAGGGCATCTACGCGAGGCCGGAATCGAGCCGCCCGACTTCAATAGCTGGCTGC
ACTGCAGAAGTTCGGGCAGGGTGGCCTTCGGTCATTTAAATTAAATTAAATTCCCTAGGTTACGT
TAATTCTAAATTAAGCAGTTAAAAGTAGCGCTGCCAACTCCCCCC
Right flanking sequence: Indices 367513 -- 368012
GCTTCGCTCGGACCCGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTAC
TTTAATTTAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGA
CCGCTTTAAAGTCACTTTAATTTCATTGAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGC
GCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAG
GGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCA
ATCAAATTACCCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGA
Found at i:367582 original size:35 final size:35
Alignment explanation
Indices: 367536--367604 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
367526 CCGGCCGCTG
367536 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
367571 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
367605 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 367036 -- 367535
AACTATAGATAGAAATGGTAGCTCACCGGGATTGAGAGGATTTGGTGGAAACAACAAACGTGGCT
CGTTCGACCCGGTGGATTCAAGCTCCATCCCGCCAATCGACTTTTTAGTGGAAAACAGCTCCAAA
CATGGACAAGAGTTACTTCTGTTTTGTTTCTTGGCAGCAGTTGATTCTAATTACGTATCAAAGAG
GTGGCTTCTTTTTGGGTTAAGTCTAGGTTGATTCATTGATGGTTCCACAGCAGCAAGGTAGGGCA
TCTACGCGAGGCCGGAATCGAGCCGCCCGACTTCAATAGCTGGCTGCACTGCAGAAGTTCGGGCA
GGGTGGCCTTCGGTCATTTAAATTAAATTAAATTCCCTAGGTTACGTTAATTCTAAATTAAGCAG
TTAAAAGTAGCGCTGCCAACTCCCCCCACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCAACTCC
TCCCTTCGGCGGAGTGGTCCTCGCTTCGCTCGGACCCGGCCGCTG
Right flanking sequence: Indices 367605 -- 368104
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCACTTTAATTTCATT
GAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCC
CTGCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCGATAGGACCACTC
CGAATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCAATCAAATTACCCGGTTTTCGCGACGGC
GCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGAATTATTTGTTGTCTTCCAACTCCCCCAACTCCGACCGATAGGGAGGA
GTTGGAAAGCTAAGCACTGCTTCCCTAGGCCCCCTAGGGCTTCGC
Found at i:370626 original size:35 final size:35
Alignment explanation
Indices: 370585--370922 Score: 649
Period size: 35 Copynumber: 9.7 Consensus size: 35
370575 CCTCCGATAG
* **
370585 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370620 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370655 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370690 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370725 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370760 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370795 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370830 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370865 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
370900 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
370923 AGGAGTGGGA
Statistics
Matches: 300, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 300 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 370085 -- 370584
TCGACCAAGGATCACCCATTCCTCTAGTGCTCCACGCCTAGTTGAGTGTGGCACACGGCAGGGGG
TTTGGTGGTCTTATTGGCGCATACCACGGTTGGGTCAGTGACTGAGGTGAAGTCGTAACATGGTA
GTCGTAGGGGAACCTGTGGCTGGATGGAATCCGTTAGGAAATATACCGTGCCGGAACCAATACTG
ATTCTTGAAAGAAAAGAAAGTTCCATGGAGAAAGGAAAAGTAGGGAGCTCAGCCCAGGTGTCACT
CAGTCCCATTCCCATCGGTCCCATTTCCATCACGTGAAGGGGAACTTCTCGTTCATCTTCGTGAA
GGAACCAATCTCGTCTTTTCCTTTGAAGGAATCAAATAGTGGGATCGAGTGGAAAATTTGGTCAC
GTAGATCGAATAGGGGCTCTCTACCCTAGTTAGGTGCTTCCCTTCCCTCTCTTTCGGGCGAGCGA
TAGCGAGCCACTTACCCCCGATAGGGGGTAAGGGTCCTCCGATAG
Right flanking sequence: Indices 370923 -- 371422
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCTACCGGGAG
GAGTTGGGGGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGC
CCGAAAGAGAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAGCACCTAACTAGGGAAGAGAGC
ACCTAAACCCAACTCCTCCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGCCC
TCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
Found at i:370932 original size:9 final size:9
Alignment explanation
Indices: 370920--370955 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
370910 CCGACCTACC
370920 GGGAGGAGT
1 GGGAGGAGT
370929 GGGAGGAGT
1 GGGAGGAGT
*
370938 GGGGGGAGT
1 GGGAGGAGT
370947 GGGAGGAGT
1 GGGAGGAGT
370956 TGGTCCGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.69, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 370420 -- 370919
TCGTCTTTTCCTTTGAAGGAATCAAATAGTGGGATCGAGTGGAAAATTTGGTCACGTAGATCGAA
TAGGGGCTCTCTACCCTAGTTAGGTGCTTCCCTTCCCTCTCTTTCGGGCGAGCGATAGCGAGCCA
CTTACCCCCGATAGGGGGTAAGGGTCCTCCGATAGGAGGACCACTCCGACCGATAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTC
CGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 370956 -- 371455
TGGTCCGAAGGACCACTCCGACCTACCGGGAGGAGTTGGGGGAGTTGGCCTAAACCCCTTACCCC
CTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAAGAGAGAGAAAGGAAACACCTTACACCT
TAGAAGGGAAGCACCTAACTAGGGAAGAGAGCACCTAAACCCAACTCCTCCCTATCGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTC
GGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCAC
TCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCA
CTCGACCGATAGGGAGAGGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTT
Found at i:371188 original size:35 final size:35
Alignment explanation
Indices: 371142--371261 Score: 213
Period size: 35 Copynumber: 3.4 Consensus size: 35
371132 CCTCCCTATC
371142 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
371177 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
371212 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
371247 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
371262 TCGGACCAAC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 370642 -- 371141
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACC
ACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGG
ACCACTCCGACCTACCGGGAGGAGTTGGGGGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGT
AAGTGGCTCGCTATCGCTCGCCCGAAAGAGAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAG
CACCTAACTAGGGAAGAGAGCACCTAAACCCAACTCCTCCCTATC
Right flanking sequence: Indices 371262 -- 371761
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGCCCTCCTATCGGAGGGC
CAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTG
CCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCT
ATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
CGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTC
Found at i:371457 original size:82 final size:82
Alignment explanation
Indices: 371366--372339 Score: 1948
Period size: 82 Copynumber: 11.9 Consensus size: 82
371356 AGGGAGAGGG
371366 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371431 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371448 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371513 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371530 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371595 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371612 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371677 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371694 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371759 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371776 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371841 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371858 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
371923 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
371940 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
372005 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
372022 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
372087 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
372104 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
372169 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
372186 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
372251 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
372268 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
372333 CTCCTCC
66 CTCCTCC
Statistics
Matches: 892, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 892 1.00
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 370866 -- 371365
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
GAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCTACCGGGAGGAGTTGGG
GGAGTTGGCCTAAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAAGA
GAGAGAAAGGAAACACCTTACACCTTAGAAGGGAAGCACCTAACTAGGGAAGAGAGCACCTAAAC
CCAACTCCTCCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGT
GGTCCTTCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGG
Right flanking sequence: None
Done.