Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_030900
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 372339
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 3 of 4
Found at i:213967 original size:9 final size:9
Alignment explanation
Indices: 213955--213983 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
213945 CCGACCGAAG
213955 GGAGGAGTT
1 GGAGGAGTT
213964 GGAGGAGTT
1 GGAGGAGTT
213973 GGAGGAGTT
1 GGAGGAGTT
213982 GG
1 GG
213984 GTCTTCGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 213455 -- 213954
CGCCCTCTCCCTAATAAGGTCTCGTGTCTAAAGACCCGCATACATAATAGGCCCTTAGGCCACCA
CCCTAATATATTTATACGTGATTCTACCTCTTTTAGATCCAGGCTGCCCAACTCCTCTTTAAAGG
CGGAATTCAAATTTGTTGTCCTCCTGCCGGAGGGCGGGTCCGAGGCGAGGACAACTCCGACCTAC
CGGGAGGAGTTGGAGGACAACTCCGACCTACCGGGTCCGAGCGAAGCGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
GGGAGGAGTTGGGGGAGTTGGAAGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTC
CGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 213984 -- 214483
GTCTTCGGATCTTCCTCTGTGACTGTAGTAGGCTCCATGAGGTAGACCTCCTGCATAGTCACACC
TAGTGACCAAGGCACGGAGTCGGAGGACGGCTGAGTGTACTGCTTCTTGAGCCTGAGGGTCACTT
CCATCAACGTGAGGGTGCTGGACCTGAGCCTCTCAGAGAGGGTATATTCCCATTTTACCCCTCTC
TATCAAGGACAAACCCGCCTTTAAAGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTAT
CGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAG
TTGGGGGAGTTGGGCGCTTCGCGCGTTTTCTTAGGCCCCGGCATTTGACTCAAGAGGGAACTTCC
TTAACAGCCAAGCACTTCTTTCCCTACCCTATAACTGGTGTCACCTCGTTCACCCCACAAACTTT
TTGTTACCACGAACAGTAAAGCGCTAGGGCTAGTCAACAAGGGAA
Found at i:215664 original size:35 final size:35
Alignment explanation
Indices: 215618--215690 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
215608 AAAGGTCCCA
215618 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
215653 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
215688 GGG
1 GGG
215691 AGGAGTGGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.25, C:0.33, G:0.32, T:0.11
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 215118 -- 215617
AAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTT
AAAGTGGCACTTAAATTTCAAGGAAATTAAATTAAAGTAACGCCGAAGGGTCCGAGCGAAGCGAG
AACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATAATTCCGTCTGCGCCGC
CGTGCACGTTCAAAGTCAATTAATTTTCGAAGCTGAATTCAACTAATTTTCAATTAATTGAAAAT
TAGTTGAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACCTCAAG
GTCCGTTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAGGAGCT
GGTTTAAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCA
Right flanking sequence: Indices 215691 -- 216190
AGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGT
AAAGTACGTACCAAGAAAGTACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACG
TACCAAGGTCTGTAGGGTCCGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAA
TTCAATTAAAGTACAAACCTTTTAAAACGTTCCAGCCAATTCAGCCGATTCAAGGTCCACTAGGC
TCGAGTCCGCTAGGTCCGCTAGGCCCGGGTCCGCTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAG
AAGAGGCTAGCTCCAAGGTGGATAGCCCACAAAGAATGGAAGAGAGGGGAGGTTTCCTTCCCTTA
ATGGACTGGATAAGGTCGTACCGGAGAATGGGCTGGATCGGGCAGTACCGGGGAATGGGCTGAAG
GCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTCTAC
Found at i:215726 original size:9 final size:9
Alignment explanation
Indices: 215688--215723 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
215678 CCGACCTACC
215688 GGGAGGAGT
1 GGGAGGAGT
215697 GGGAGGAGT
1 GGGAGGAGT
*
215706 GGGGGGAGT
1 GGGAGGAGT
*
215715 TGGAGGAGT
1 GGGAGGAGT
215724 TGGTCCGCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.67, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 215188 -- 215687
GGCACTTAAATTTCAAGGAAATTAAATTAAAGTAACGCCGAAGGGTCCGAGCGAAGCGAGAACAA
CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATAATTCCGTCTGCGCCGCCGTGC
ACGTTCAAAGTCAATTAATTTTCGAAGCTGAATTCAACTAATTTTCAATTAATTGAAAATTAGTT
GAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACCTCAAGGTCCG
TTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAGGAGCTGGTTT
AAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 215724 -- 216223
TGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTACGTACCAAGAAAGTACGTATCGGTACC
AAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAGGTCTGTAGGGTCCGCACCAAGGTTCG
CAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATTAAAGTACAAACCTTTTAAAACGTTCC
AGCCAATTCAGCCGATTCAAGGTCCACTAGGCTCGAGTCCGCTAGGTCCGCTAGGCCCGGGTCCG
CTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGTGGATAGCCCACAAA
GAATGGAAGAGAGGGGAGGTTTCCTTCCCTTAATGGACTGGATAAGGTCGTACCGGAGAATGGGC
TGGATCGGGCAGTACCGGGGAATGGGCTGAAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGC
TTCAAGCTCTACCTCTCCACCTTCTGGCATTCTCTCTCCCCAGTC
Found at i:215992 original size:24 final size:24
Alignment explanation
Indices: 215938--215992 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
215928 AGCCGATTCA
* *
215938 AGGTCCACTAGGCTCGAGTCCGCT
1 AGGTCCGCTAGGCCCGAGTCCGCT
*
215962 AGGTCCGCTAGGCCCGGGTCCGCT
1 AGGTCCGCTAGGCCCGAGTCCGCT
215986 AGGTCCG
1 AGGTCCG
215993 TTCTAAGGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.13, C:0.35, G:0.35, T:0.18
Consensus pattern (24 bp):
AGGTCCGCTAGGCCCGAGTCCGCT
Left flanking sequence: Indices 215438 -- 215937
AAAATTAGTTGAATTCGAAGTAACAACACTTTAATTTCCTTTAATTTAAAATTAAAGTAACAACC
TCAAGGTCCGTTCTTCCCGGGTCCGTAGGGTCTTTCCAGGGTCCGCTAGGTCCGTTGCTGAGAAG
GAGCTGGTTTAAGCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTG
GGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTAC
GTACCAAGAAAGTACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAG
GTCTGTAGGGTCCGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATT
AAAGTACAAACCTTTTAAAACGTTCCAGCCAATTCAGCCGATTCA
Right flanking sequence: Indices 215993 -- 216492
TTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGTGGATAGCCCACAAAGAATGGAAG
AGAGGGGAGGTTTCCTTCCCTTAATGGACTGGATAAGGTCGTACCGGAGAATGGGCTGGATCGGG
CAGTACCGGGGAATGGGCTGAAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTC
TACCTCTCCACCTTCTGGCATTCTCTCTCCCCAGTCGGCTGGGATAGAGTCAGTCTCTCCACCTT
CCCCAATCGATTGGGGAGAATGATGCATATTGGGGAATGAGCTGAGAAGGCCCTGCTAGGGAATG
GGCAGGATTAGGCCATACCGTCAATTTCCAGGCTCTCTCTTGCTCCGACTTCCGCCTTGATTGGG
GAATGGAACTTCCAGGCCTTTTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTA
GTCCGAGCTGGGGCCCCAATCGATTGGGGCATCTTCCCGGGCGAA
Found at i:216116 original size:27 final size:27
Alignment explanation
Indices: 216080--216142 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
216070 TCCTTCCCTT
* *
216080 AATGGACTGGATAAGGTC-GTACCGGAG
1 AATGGGCTGGAT-AGGGCAGTACCGGAG
* *
216107 AATGGGCTGGATCGGGCAGTACCGGGG
1 AATGGGCTGGATAGGGCAGTACCGGAG
216134 AATGGGCTG
1 AATGGGCTG
216143 AAGGCCTGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.24, C:0.16, G:0.43, T:0.17
Consensus pattern (27 bp):
AATGGGCTGGATAGGGCAGTACCGGAG
Left flanking sequence: Indices 215580 -- 216079
GCCCCAGGTTCTGTAGGGTCTGTTGTTTAAAGGTCCCAGGGTCCGAACGAAGTGAGGACCACTCC
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGG
GGAGTTGGAGGAGTTGGTCCGCAGGGTCTGTAGTTCCAGGGTCCGTAAAGTACGTACCAAGAAAG
TACGTATCGGTACCAAGAAGGTATTCTTACGTACCAGGAGGGTACGTACCAAGGTCTGTAGGGTC
CGCACCAAGGTTCGCAAGGTCTAAATCACTTTAATTTTCAATGAAATTCAATTAAAGTACAAACC
TTTTAAAACGTTCCAGCCAATTCAGCCGATTCAAGGTCCACTAGGCTCGAGTCCGCTAGGTCCGC
TAGGCCCGGGTCCGCTAGGTCCGTTCTAAGGTCCGTTGCCGAGAAGAAGAGGCTAGCTCCAAGGT
GGATAGCCCACAAAGAATGGAAGAGAGGGGAGGTTTCCTTCCCTT
Right flanking sequence: Indices 216143 -- 216642
AAGGCCTGGAAGAGGCGGGAGAGAGAGAAAGGTTGCTTCAAGCTCTACCTCTCCACCTTCTGGCA
TTCTCTCTCCCCAGTCGGCTGGGATAGAGTCAGTCTCTCCACCTTCCCCAATCGATTGGGGAGAA
TGATGCATATTGGGGAATGAGCTGAGAAGGCCCTGCTAGGGAATGGGCAGGATTAGGCCATACCG
TCAATTTCCAGGCTCTCTCTTGCTCCGACTTCCGCCTTGATTGGGGAATGGAACTTCCAGGCCTT
TTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTAGTCCGAGCTGGGGCCCCAAT
CGATTGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTT
CTACTGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTT
GCGGAAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGA
Found at i:216916 original size:14 final size:14
Alignment explanation
Indices: 216890--216930 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
216880 GTAAAGAAGA
*
216890 CTCTCTCCCCTTCC
1 CTCTCTTCCCTTCC
*
216904 CTTTCTTCCCTTCC
1 CTCTCTTCCCTTCC
216918 CTCTCTTCCCTTC
1 CTCTCTTCCCTTC
216931 TTTCCCGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (14 bp):
CTCTCTTCCCTTCC
Left flanking sequence: Indices 216390 -- 216889
ACTTCCAGGCCTTTTAAAGGCTTCCGTCCCTCCATTCCCCAATTGATTGGAGCATTTAGTCCGAG
CTGGGGCCCCAATCGATTGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAA
GGGCTCTACCTTTCTACTGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTA
AAGGTTGATTTTTGCGGAAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACT
CCCTCTCTTCCCTGGGGTAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCT
CTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCC
CTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGA
Right flanking sequence: Indices 216931 -- 217430
TTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGCACTGGTGGAACCGAAACTGTTGGT
GCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAAGTTGGTGCCGGAA
CTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTG
TCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGC
GATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGA
AACTCTCTTCCCTAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCT
AGCTGAGGGAAAGGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGG
TCTTCCCGGAAGGAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAA
Found at i:216990 original size:15 final size:15
Alignment explanation
Indices: 216972--217070 Score: 76
Period size: 15 Copynumber: 6.7 Consensus size: 15
216962 ATCAATTGGC
*
216972 ACTGGTGGAACCGAA
1 ACTGTTGGAACCGAA
** *
216987 ACTGTTGGTGCCGGA
1 ACTGTTGGAACCGAA
*
217002 ACTGTTGGAACTGAA
1 ACTGTTGGAACCGAA
** *
217017 ACTGTTGGTGCCGGA
1 ACTGTTGGAACCGAA
*
217032 ACTGTTGGAACTGAA
1 ACTGTTGGAACCGAA
** *
217047 A--GTTGGTGCCGGA
1 ACTGTTGGAACCGAA
217060 ACTGTTGGAAC
1 ACTGTTGGAAC
217071 TGCTACAGCT
Statistics
Matches: 60, Mismatches: 22, Indels: 4
0.70 0.26 0.05
Matches are distributed among these distances:
13 9 0.15
15 51 0.85
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.24
Consensus pattern (15 bp):
ACTGTTGGAACCGAA
Left flanking sequence: Indices 216472 -- 216971
TGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTTCTAC
TGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTTGCGG
AAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACTCCCTCTCTTCCCTGGGG
TAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGG
TAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCC
CTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCC
CTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGC
Right flanking sequence: Indices 217071 -- 217570
TGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGG
CAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGA
TGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTC
CCTAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGA
AAGGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGA
AGGAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTG
AGACATGGAAAATGAGTTCGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGC
TACGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACAC
Found at i:217018 original size:30 final size:30
Alignment explanation
Indices: 216972--217072 Score: 170
Period size: 30 Copynumber: 3.4 Consensus size: 30
216962 ATCAATTGGC
* *
216972 ACTGGTGGAACCGAAACTGTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
217002 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
217032 ACTGTTGGAACTGAAA--GTTGGTGCCGGA
1 ACTGTTGGAACTGAAACTGTTGGTGCCGGA
217060 ACTGTTGGAACTG
1 ACTGTTGGAACTG
217073 CTACAGCTCC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 25 0.36
30 44 0.64
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.25
Consensus pattern (30 bp):
ACTGTTGGAACTGAAACTGTTGGTGCCGGA
Left flanking sequence: Indices 216472 -- 216971
TGGGGCATCTTCCCGGGCGAAAGAAAGAGAGAGGTTGCGCACTTTAAAGGGCTCTACCTTTCTAC
TGGCCTTCTACTCCCCCTAGTCGGGGAATACGGGGTTTTTGTCCTTTAAAGGTTGATTTTTGCGG
AAATGGCCTCTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGTACTCACTCCCTCTCTTCCCTGGGG
TAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGG
TAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCC
CTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCC
CTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGC
Right flanking sequence: Indices 217073 -- 217572
CTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCA
GGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATG
CTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTCCC
TAGGAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGAAA
GGAAACCCTCTCTCCCCTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAG
GAAGAGAGAGATTCTTTCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAG
ACATGGAAAATGAGTTCGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTA
CGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACACAT
Found at i:217264 original size:29 final size:28
Alignment explanation
Indices: 217222--217348 Score: 122
Period size: 30 Copynumber: 4.6 Consensus size: 28
217212 AGGGAATGAG
*
217222 AAGGAAACTCTCTTCCTTAGCGGCAGGGA
1 AAGGAAACTCTCTTCCCTAGCGG-AGGGA
217251 AAGGAAACTCTCTTCCCTA--GGA-GG-
1 AAGGAAACTCTCTTCCCTAGCGGAGGGA
** *
217275 AA--ACCCTCTCTTCCCTAGCTGAGGGA
1 AAGGAAACTCTCTTCCCTAGCGGAGGGA
*
217301 AAGGAAACCCTCTCTTCCCTAGCTGAGGGA
1 AAGGAAA--CTCTCTTCCCTAGCGGAGGGA
*
217331 AAGGAAACCCTCTCTCCC
1 AAGGAAACTCTCT-TCCC
217349 CTCTCTTCCC
Statistics
Matches: 82, Mismatches: 7, Indels: 18
0.77 0.07 0.17
Matches are distributed among these distances:
22 13 0.16
24 4 0.05
25 4 0.05
26 3 0.04
27 2 0.02
28 6 0.07
29 22 0.27
30 28 0.34
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (28 bp):
AAGGAAACTCTCTTCCCTAGCGGAGGGA
Left flanking sequence: Indices 216722 -- 217221
TTCCCTGGGGTAAAGGAAACCGGGGAAAGGAAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCT
CTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTC
CCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTC
CCTCTCTTCCCTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAATTGGCACTGGTGGAA
CCGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAA
AGTTGGTGCCGGAACTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTT
TGAGTTGTGAAGTGTCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCTCCCGGAACAAGGCCT
CTGTAGGGCTGGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAG
Right flanking sequence: Indices 217349 -- 217848
CTCTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTT
TCTCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTT
CGCACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAA
GTGCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAAT
GCCTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACC
ACCTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTC
CCCCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTG
GCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
Found at i:217277 original size:20 final size:21
Alignment explanation
Indices: 217252--217292 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
217242 CGGCAGGGAA
217252 AGGAAA-CTCTCTTCCCTAGG
1 AGGAAACCTCTCTTCCCTAGG
217272 AGGAAACCCTCTCTTCCCTAG
1 AGGAAA-CCTCTCTTCCCTAG
217293 CTGAGGGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.24
Consensus pattern (21 bp):
AGGAAACCTCTCTTCCCTAGG
Left flanking sequence: Indices 216752 -- 217251
AAACTCTCTTCCCTTCCTTCCCTTCCCTCTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCC
AGCTAGGGTAAAGGAAACCTTCCCTTCCCTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGT
AAAGAAGACTCTCTCCCCTTCCCTTTCTTCCCTTCCCTCTCTTCCCTTCTTTCCCGGGAAAGGGG
GACTCCTGGCACAGAATCAATTGGCACTGGTGGAACCGAAACTGTTGGTGCCGGAACTGTTGGAA
CTGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAAGTTGGTGCCGGAACTGTTGGAACTGCTAC
AGCTCCTGCTTTCTCTCGGCCTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCAGGCC
CGCCATCATCAATTCTTGCTCCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATGCTGA
GAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCGGCAGGGAA
Right flanking sequence: Indices 217293 -- 217792
CTGAGGGAAAGGAAACCCTCTCTTCCCTAGCTGAGGGAAAGGAAACCCTCTCTCCCCTCTCTTCC
CTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTTTCTCTCTTC
CCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTTCGCACTTAT
AATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAAGTGCTTCTA
CTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAATGCCTCAAAG
GGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACCACCTGGTTC
GAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTCCCCCCCGTC
CGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTA
Found at i:217308 original size:30 final size:30
Alignment explanation
Indices: 217272--217350 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
217262 CTTCCCTAGG
217272 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
1 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
217302 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
1 AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
*
217332 AGGAAACCCTCTCTCCCCT
1 AGGAAACCCTCTCTTCCCT
217351 CTCTTCCCTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.20
Consensus pattern (30 bp):
AGGAAACCCTCTCTTCCCTAGCTGAGGGAA
Left flanking sequence: Indices 216772 -- 217271
CCTTCCCTCTTTTCTCTAGCTGAGGTAAAGGGAACTCTCTTCCCCAGCTAGGGTAAAGGAAACCT
TCCCTTCCCTTTTTCCCTTCCTTCCCTCTCTCTTCTAGCTAGGGTAAAGAAGACTCTCTCCCCTT
CCCTTTCTTCCCTTCCCTCTCTTCCCTTCTTTCCCGGGAAAGGGGGACTCCTGGCACAGAATCAA
TTGGCACTGGTGGAACCGAAACTGTTGGTGCCGGAACTGTTGGAACTGAAACTGTTGGTGCCGGA
ACTGTTGGAACTGAAAGTTGGTGCCGGAACTGTTGGAACTGCTACAGCTCCTGCTTTCTCTCGGC
CTTGTAGGCGATGTTTGAGTTGTGAAGTGTCTGACTAGGCAGGCCCGCCATCATCAATTCTTGCT
CCCGGAACAAGGCCTCTGTAGGGCTGGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGA
AACTCTCTTCCTTAGCGGCAGGGAAAGGAAACTCTCTTCCCTAGG
Right flanking sequence: Indices 217351 -- 217850
CTCTTCCCTCTCCTTCTCTTCCCGTACGCGGCAGGTCTTCCCGGAAGGAAGAGAGAGATTCTTTC
TCTCTTCCCGTCGAAATCCCCCATGTTAGGCCTTCTTCCCCCGTGAGACATGGAAAATGAGTTCG
CACTTATAATCGTTGAGAAGTGCCGGGGGCACAAAAGGGTAAAGCTACGCGCTTTCCCTTTAAGT
GCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGATCAAGGATTGGGCTGGAAATGC
CTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAAGAGGACTCGAACCTCTAACCAC
CTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGCTTTCAGAAATGACACGCCTCCC
CCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTGGC
CCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCACTC
Found at i:218063 original size:35 final size:35
Alignment explanation
Indices: 218024--218131 Score: 216
Period size: 35 Copynumber: 3.1 Consensus size: 35
218014 TCCCACTCCT
218024 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
218059 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
218094 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
218129 CCC
1 CCC
218132 TAGTGTGAAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 73 1.00
ACGTcount: A:0.11, C:0.31, G:0.33, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 217524 -- 218023
GCTACGCGCTTTCCCTTTAAGTGCTTCTACTCAATACTATTCTACACATGCATCTATTGGGGCGA
TCAAGGATTGGGCTGGAAATGCCTCAAAGGGGAAGGGAACATTACTGGAGTGAGTGTACACCGAA
GAGGACTCGAACCTCTAACCACCTGGTTCGAAGCCAGGTACTCTATCCGATTGAGCTATCGGTGC
TTTCAGAAATGACACGCCTCCCCCCCGTCCGTCGGAACGATTCAACCCCGGGCCTGGGGCCAGGG
TAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
TCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAATTCCTAGGGAGGAGTTGGCCCGAGAACG
AACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCGTTGCCAACTCCTCCCTATCGGTCGGAGT
GGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 218132 -- 218631
TAGTGTGAATGCTAAGAATGAGGAACCTACAGATCCCCTTGAACCTATAAGTATGTCGAGCTCTG
CCTTTGTCTCAATTACTAGTTCGGAGATAAGGGTTGCTTCCACTGGGTAGTACTATCAGTCCAAC
TCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGCCTTTAGGCACTCGACCGATAGGGAGAGG
GTCGGAGTTGTCCTCCTGTCGGAGGACCCTTGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCT
CCTGGATGCCATTTCTTGTGGGTATCTCTGTCCCACCCTAACGGTACTGTAACCGACAACGGAGG
CTGGCTGCCGGGGATGTCGCCACAGTTGGACAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTAT
CCTGCCGGGGTGGGAGGATTTGTGGACTGTTAGCCTAACTCCTGT
Found at i:218270 original size:9 final size:9
Alignment explanation
Indices: 218256--218285 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
218246 GTACTATCAG
218256 TCCAACTCC
1 TCCAACTCC
218265 TCCAACTCC
1 TCCAACTCC
218274 TCCAACTCC
1 TCCAACTCC
218283 TCC
1 TCC
218286 CGGTAGGTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 217756 -- 218255
CGATTCAACCCCGGGCCTGGGGCCAGGGTAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCC
GACCTACCGGGTCCGAGGCGAGGACCACTCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAA
TTCCTAGGGAGGAGTTGGCCCGAGAACGAACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCG
TTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTC
CCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
CACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTAGTGTGAATGCTA
AGAATGAGGAACCTACAGATCCCCTTGAACCTATAAGTATGTCGAGCTCTGCCTTTGTCTCAATT
ACTAGTTCGGAGATAAGGGTTGCTTCCACTGGGTAGTACTATCAG
Right flanking sequence: Indices 218286 -- 218785
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTATCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAG
GACCCTTGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCTCCTGGATGCCATTTCTTGTGGGTA
TCTCTGTCCCACCCTAACGGTACTGTAACCGACAACGGAGGCTGGCTGCCGGGGATGTCGCCACA
GTTGGACAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTATCCTGCCGGGGTGGGAGGATTTGTG
GACTGTTAGCCTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCG
CTTCCAGGCCCAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTA
TGACGCGGGCTGCAGGACACACTCCCTTCAAGCCGATTTGGCCGG
Found at i:218323 original size:35 final size:35
Alignment explanation
Indices: 218284--218356 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
218274 TCCAACTCCT
218284 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
218319 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
218354 CCC
1 CCC
218357 TATCGGCCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.11, C:0.32, G:0.33, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 217784 -- 218283
TAGCGCGTAGCGCTACCCTGGCCCCAGCAAGGGGTCCGACCTACCGGGTCCGAGGCGAGGACCAC
TCCGACCTACCGGGAGGAGTTGGGGGACAACAAATAATTCCTAGGGAGGAGTTGGCCCGAGAACG
AACCAAAAGGAACTCCGGACCTATCGGATTCGGAGCGTTGCCAACTCCTCCCTATCGGTCGGAGT
GGCCCTCCTATCGGAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTAGTGTGAATGCTAAGAATGAGGAACCTACAGATCCCCTTGA
ACCTATAAGTATGTCGAGCTCTGCCTTTGTCTCAATTACTAGTTCGGAGATAAGGGTTGCTTCCA
CTGGGTAGTACTATCAGTCCAACTCCTCCAACTCCTCCAACTCCT
Right flanking sequence: Indices 218357 -- 218856
TATCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCT
TGTTGGGCTCGTTTCCCCTGCTCTCTTTGTGGTCTCCTGGATGCCATTTCTTGTGGGTATCTCTG
TCCCACCCTAACGGTACTGTAACCGACAACGGAGGCTGGCTGCCGGGGATGTCGCCACAGTTGGA
CAGCACAGAGGTCGGGTGCCTCTCTCTCTGGCTATCCTGCCGGGGTGGGAGGATTTGTGGACTGT
TAGCCTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCGCTTCCA
GGCCCAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTATGACGC
GGGCTGCAGGACACACTCCCTTCAAGCCGATTTGGCCGGAGAGGCCATGGTTATTAGAGGGAGAA
TCAACGATGTGGGGGTTGCATGATAGATTGGCCAGCCTCGGCACT
Found at i:219167 original size:35 final size:35
Alignment explanation
Indices: 219121--219263 Score: 286
Period size: 35 Copynumber: 4.1 Consensus size: 35
219111 CCCCACTCCT
219121 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
219156 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
219191 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
219226 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
219261 CCC
1 CCC
219264 TATCGGAATT
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 108 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 218621 -- 219120
CTAACTCCTGTCCCACTGCTGTCCAGTGAACTCTTTATCGTGGAGGACGTCTCCGCTTCCAGGCC
CAAGGATACGATAGGCACTTACTCCCCTCCTCCCTGCCGCCGGGCAGCATCTCTATGACGCGGGC
TGCAGGACACACTCCCTTCAAGCCGATTTGGCCGGAGAGGCCATGGTTATTAGAGGGAGAATCAA
CGATGTGGGGGTTGCATGATAGATTGGCCAGCCTCGGCACTTCAAACGGGCTAGCCAACAACTAC
TATTATCGGTCCTACGATGAGAGAGAGACGAATGAAATGGGGTAAATAATGATCCATAAGGGTGT
ATAGCTCAGTTGGTAGAGCATTGGGCTTTTAATCTAATGGTCGCAGGTTCGAGTCCTGCTATACC
CAACCCAACTCCTTCAAACCCCAGCGACGTGGCTAAAGTGGGGTCAATGGGTCCCCAGCACTTTC
TATATACGCAATTTCGGCCCAACTCCTCCCACTCCCCCCACTCCT
Right flanking sequence: Indices 219264 -- 219763
TATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTGCACTGTTCTATATACGCAATTCCATG
ATTAAGTCAGTGCAGGCAAGTAGGTGAAGTGATTGGGGCAACCGTAAAGAAAGGGTGTGGTCGGA
TGGAGAGGGATTCGAACCCCCGGTATTAATACAATACGTCAGTTTTCAAGACTGATACCTTAAAC
CACTCAGACATCCATCCTTTCATCAACAGGATCATAAGCCTAGAGAGCCTAGCTCTCTTCCTTGA
CTTGGAAGGACTGGAATTCACCTTCATTCCCTCTCAGGCTTCGGGGCTTCCCTTTCCTTTCCTGC
AACTTGCACCCGGGCGAAAATCCTTTAATTTTCAATGAAATTAGCCTTTTTTCGAGGCCTTCCTT
TAGATAAACTGACTCTTTTCGAGTTCCTTCCGGAACGAAAATCAATGGTCTTTAAATGCTTTTAG
TGGCATCAATCCTTCCAGATTCTGAGTTTCCGGCTGCCAGGTGAA
Found at i:221295 original size:10 final size:10
Alignment explanation
Indices: 221262--221296 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
221252 AAAAGGGCTA
*
221262 AATTAAATTC
1 AATTAATTTC
*
221272 AATGAATTTC
1 AATTAATTTC
221282 AATTAATTTC
1 AATTAATTTC
221292 AATTA
1 AATTA
221297 GCAGAAAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (10 bp):
AATTAATTTC
Left flanking sequence: Indices 220762 -- 221261
TCTCTTGCCCATCTGAAGGAGAGGGGGAATTGGCCATTTTTTTGAAGGCCTTTCCCTGCACTGCA
TACAAACCTTACCACTGCCATTTCTGAAGGCGGAAAATGCTTCTATATACGTTATTTCAAGAGTG
TATTTTGCCGAGGTGCGGAACTTACTTATAGGAAGCGCTAAAAACTCCTTTTTTCTTAGGCAAAT
GAGCTTTAAAGTCATGTATTTTACCAAAACGCTTTTGAGTATGCTAGGCTTCTTCCCCCCGGCAA
TCTGAGGATGGGCCACGGTCCGGAGGCACTCGACCGATAGGGAGAGGACACGAAGACCGACCGAG
AGGGAGGGCCGCTAGGCACTCAACCGACGAGAGGAGGTTGAGGGAGAGGGGCCATCCTCGAAAGT
GGTAGGTAGTACTTTTAGAAGGCTGGGAGCCTTTTTGAGGAGAGACCTAGCTTATCCTCAAGATA
AGAGAGCCGCATCCTCAAAAGGAGGCGCCCTTTAAAAAAGGGCTA
Right flanking sequence: Indices 221297 -- 221796
GCAGAAAAGGGCTCTTTTGGGCTTTCTCCGAAGAGAGAGGTTTTGGGAGAGGGAGAGTATTTTAC
AACAAGGACTGAGACCGTTTTTCTATTTACCCCACAGTTTCACAGAGTCTGTAGTCTTACGTACG
CAGAGTCTTACTCTGTACGCAGAGCACAGTTCTCGACTTGAATCCTTTGCCTTCGCCGAAAGCAA
TCTCTCAGATTGGTAATTTAGCGATGGAGAATGCGCGTAAGCGTTGAATGTGGGGGCGCGCGCGT
TTAAAGTCATGTATTCTCCCGCTTAGTCGCGTTTGCAGAATCTGACACTTTCTGCGCTTTCAGTA
AAGGTTGGAAGGGGCAGATTTTGAGACTGAGGAGGTCGTTTCCCAGGGGTATCAGCGGTACCAAG
GCATAACGCTATGTTCCTTATGTCCCGCCAAGGCTAGAGACGCGCTCCGGAAGGTAAGTTACTTT
AATTTAATTTAGTGTAGAAATGACTTTTTAAGACGAGATTCGGCT
Found at i:223952 original size:6 final size:6
Alignment explanation
Indices: 223941--223991 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
223931 GACAATTCGA
223941 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
1 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
223989 TCC
1 TCC
223992 CTATCGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (6 bp):
TCCAAC
Left flanking sequence: Indices 223441 -- 223940
GAGCCTAGATCAGTTCGGTTTGGATCGGCCAATGAAGCCGCCCGTCCGTGCCAGTGAGTCCGTCT
CTCTGCCGACGAAGCGGCCCGTCCCATGGACGATCAGAGCTCCAACGTCCCTTCGGGCCTGTGGT
GTAGTGGGGTCGGCATTGAGCTAAAGAACGCGATATCGTCTTTGGGACCAAAATATTCTCAGCGC
CTTTTAAAGTACTGGTTTGAAGTGAAGCGGACCGCTTAAAGGGCTACTCCGACCTAGGAGTAAAT
CGCTATCAAGGCTGCCGGCCGGGACTCTCGAATCTGTTCCTCAGATCGAAGAAACCACCTTCCTA
CTTAGGGGCAGGCAGAAACTCCGCAGAGGCTTCCAGATTGCGTTCTGACGCCAGATATGGCCTTG
GATGTGGGATCCGGCACAAATCTCAGAATGCGATCCAAGGCCATTTTTACTGAGGGGTTGCCATC
AAGAAGGCGCAGGAGCGTAGCTTCCGTGCTACGTTGACAATTCGA
Right flanking sequence: Indices 223992 -- 224491
CTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTG
TCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACC
CTATCGGTCGTTGCCTAAAGGCCCTGAATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCC
TTCCAAGCCCTTCCACTGCCCGAACTACCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACT
CGAACTTCTGTCATGTCAAGCTTCCTGACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAAT
GGCCAAGCGCTACGCGCTTCACAGCTGGGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGC
TTTGGCGAGCAAGCGCGCCCGCTTTGGGCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCG
TTTAAAGCCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTT
Found at i:224134 original size:26 final size:26
Alignment explanation
Indices: 223990--224128 Score: 278
Period size: 26 Copynumber: 5.3 Consensus size: 26
223980 AACTCCAACT
223990 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
224016 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
224042 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
224068 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
224094 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
224120 CCCTATCGG
1 CCCTATCGG
224129 TCGTTGCCTA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 113 1.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (26 bp):
CCCTATCGGGAGTTGTCCTGAACGGA
Left flanking sequence: Indices 223490 -- 223989
GCCAGTGAGTCCGTCTCTCTGCCGACGAAGCGGCCCGTCCCATGGACGATCAGAGCTCCAACGTC
CCTTCGGGCCTGTGGTGTAGTGGGGTCGGCATTGAGCTAAAGAACGCGATATCGTCTTTGGGACC
AAAATATTCTCAGCGCCTTTTAAAGTACTGGTTTGAAGTGAAGCGGACCGCTTAAAGGGCTACTC
CGACCTAGGAGTAAATCGCTATCAAGGCTGCCGGCCGGGACTCTCGAATCTGTTCCTCAGATCGA
AGAAACCACCTTCCTACTTAGGGGCAGGCAGAAACTCCGCAGAGGCTTCCAGATTGCGTTCTGAC
GCCAGATATGGCCTTGGATGTGGGATCCGGCACAAATCTCAGAATGCGATCCAAGGCCATTTTTA
CTGAGGGGTTGCCATCAAGAAGGCGCAGGAGCGTAGCTTCCGTGCTACGTTGACAATTCGATCCA
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACT
Right flanking sequence: Indices 224129 -- 224628
TCGTTGCCTAAAGGCCCTGAATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCCTTCCAAG
CCCTTCCACTGCCCGAACTACCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACTCGAACTT
CTGTCATGTCAAGCTTCCTGACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAATGGCCAAG
CGCTACGCGCTTCACAGCTGGGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGCTTTGGCG
AGCAAGCGCGCCCGCTTTGGGCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCGTTTAAAG
CCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTA
AAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTCATGTATTTTACCCTAAAGTC
ATGTATTTTACATGTATTCTCCCGCTAGATTTAGTAAATAGGAAA
Found at i:224479 original size:20 final size:20
Alignment explanation
Indices: 224454--224594 Score: 282
Period size: 20 Copynumber: 7.0 Consensus size: 20
224444 CCGTTTAAAG
224454 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224474 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224494 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224514 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224534 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224554 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224574 CCCTAAAGTCATGTATTTTA
1 CCCTAAAGTCATGTATTTTA
224594 C
1 C
224595 ATGTATTCTC
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 121 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.40
Consensus pattern (20 bp):
CCCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 223954 -- 224453
CCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCCTATCGGGAGTTGTCCTGAACGGACCC
TATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGT
CCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGTCGTTGCCTAAAGGCCCTGA
ATCGAGGGACGTAGCGCTTTCAATCCCTTACAGCTGCCTTCCAAGCCCTTCCACTGCCCGAACTA
CCAATCGCCCCACTACCTGCTAGAATTCTGGTTCGACTCGAACTTCTGTCATGTCAAGCTTCCTG
ACCTGCTTCGTACCAGCCGGTATTTTATCTTCGATAATGGCCAAGCGCTACGCGCTTCACAGCTG
GGAGCAGGCCCCCGGCGGACACTTGGATAGGCTCATGCTTTGGCGAGCAAGCGCGCCCGCTTTGG
GCTGGTGGGTTTTGGGGAAGTTGGCTATGGGGAGCCCGTTTAAAG
Right flanking sequence: Indices 224595 -- 225094
ATGTATTCTCCCGCTAGATTTAGTAAATAGGAAAAGAGTGGCTTCTAGCTAGCTCCAAAAACTAC
TACCTGCGGAGAAGGAATCGAACCGCTTTTAAAGCGGTCTGCCGGGATAATTTACCATTAATCTA
TATCCGCTGAGTACAACACAACTGACTAAGGGCTACAGTGTTGTTGGAACGTATTCACTAGCCGA
GCACTGGCATAGGCGCTAGCGAGTCGTGTCAGCGCGAATATTTACCAACACCGTCCAAAGTCTCT
TCACCTTACTTATTACTTGGGACCTTAGGAACCTGCCGGAATCAGCCGGCGGGGGCTCTTACTGA
AGACCTTCCATAGCCCTTTTAAAGTGCTTGAACTAACGAAATATCAATCACTGGAGTTGGTTTTC
TAACAAAGTATCCGGCCTTTTAGTCATGGCAGAGCGAAGTGAATGGCCGAATTTTGAATCGGAAT
AATTCCGAACTTAGCGGTTCCCGTCTAGGCATTATTTGGTAGCAT
Found at i:226584 original size:15 final size:15
Alignment explanation
Indices: 226564--226592 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
226554 TGCTGAAAGG
226564 TAGAGATACTGGTGC
1 TAGAGATACTGGTGC
226579 TAGAGATACTGGTG
1 TAGAGATACTGGTG
226593 GTGGGGCGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (15 bp):
TAGAGATACTGGTGC
Left flanking sequence: Indices 226064 -- 226563
AATTAATGAACCCCGGCGCTTTCCAAAAAAGAAAGCGCGTAGCAGCTACTGCCGGAACTTGCAAT
CCCCTTTCCGATCCACCTCCCACGCGAAAGAGTGCGGGGAAGCCTTTAAGTAGCTGCTGGGCTAT
TGATCCCTCTCTTTTCCCTATAGTGAGTAGCCGCTTTTCTTTGAATCCGGCAGCTAGCTAGCTAC
TGACACCAACCAATTGGTGGAGGTCTAGGCAGTAGCGCCCCAGCCTTTAAGGAACCAGCCTTTAA
AATGCTAGCTTCCCCAGCCCAGCTAGCTAGCCCAGTATCGCTCCGCTTCGCCACTAGCCTTTTTC
GTCAAATCTGTTTACACGAATTCGATCGATAGGGGTGTCACATACTGGACCTTCATCGATGGGTA
CCTACCGGGAGGGGGAGGGTCCGAAGGACACTCGACCGATAGGGAGAGGGAGAGGGGGTTTTACT
AAATCAGAAGTTACTCTGGATGATGAAGGTGGGACTGCTGAAAGG
Right flanking sequence: Indices 226593 -- 227092
GTGGGGCGGAGCGTGTCACGCGTTTTCCTTAAAGGATTTCCGGACCTTTAAGGTGGCGGTGAAAG
CCTTTTAAATGGTGGACTCCCTTTTTCGGGTTCTCTAGAGGAAAATCGTGTTGATGCCTGCTTTA
AATGCTTTAAACTTTAATTTAATTTCATTGAAAATTAAAGTAGCTCTACTCTAAAAACCTTTAAT
TTTCAATGAAATTAGATTCGATGGGGCGATTGGAGGCAACTCGGGGGGCTGGAAGGGGCAGGGAA
AGCGCTTCTCGCCACCCCCCATCCCGCGAAAGCGCTGTCAACACTCGATCGGGTCTACCAAAGAA
CCTTTAATTTCATTGAATTTAAAATTCAATGAAATTCTCGAAAGTAACTTTCATTTTAAATTCAA
TGAAATTAAAGGTTCTTATCGAAGGCCCGGCAAACCAAAGTTTGCCCGCTAGGCAATCGGTCGAT
CAGATGCTACACTTCGATCAGAAGTTTTTGACTAAGAAAATGACC
Found at i:228186 original size:18 final size:18
Alignment explanation
Indices: 228165--228220 Score: 112
Period size: 18 Copynumber: 3.1 Consensus size: 18
228155 AGGGGTAAAG
228165 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
228183 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
228201 GCCAGTGAAGCCTTTTAA
1 GCCAGTGAAGCCTTTTAA
228219 GC
1 GC
228221 TCCCCTACCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (18 bp):
GCCAGTGAAGCCTTTTAA
Left flanking sequence: Indices 227665 -- 228164
ATAGTGGCCCGGCAGTGGCCTACTAAAGGCCACACCCTGCCCTAGGGGTAGGGGCGCGTAGCGCT
TGAAATGAAGTGTGTCACACTTCGGGCGGGGGGCGCTAGCGCTAGGTTTGAAGCAGCCGGCCCCC
AGCTGCGGAGCGAGTAGCGCCACTAATCACGAAGAAGTGGTACTTGGAGTAGTAGCACTTCACAA
ACCGGTAGATAGATTCGATCGACTGCATCCACCGGGCCCCTTTAAAAGTGCGCCTTAATAAGTGA
AAGAAAAAGAGAAAGAAGAACCTGGCTGGGGCCCCTACCCCAGCCAGTGGCTAACGCCCCTCAGA
TCCGCTTTGGGTAAGAACCCTGGTGAGACATAGGGCTTGCCGGCCCGCTGATGCTCTCTTCGGTC
ACACCCCTTTAAAGGCCGGAACCCTCTAGAAGAACGCGGGAGAGTAGCGACCTTCCCTCAGAGCG
CATTACCTTAATAAGTATTGTCCCTCCCGAAGAGAAGGGGTAAAG
Right flanking sequence: Indices 228221 -- 228720
TCCCCTACCCGAAACTTTAAAGACGTGCGATAAGCGCTTCGTGACATGTTTCAAAGGGGGTAGGG
GGCTGCCAGTGAAGCCACGCGCTTTAACCCCCTACCCGTACGTGGTCCGTATTCACACACACGTA
GAGCCACCTGAGCAGCCTACCTCTCTACAGCAGCCTGCATTTGCTTGGATCTATCTATTAGTTCA
TTGTGTGGATGTGCACCCTTTCCCTTTGCTGAATCCTCTAACGTTTCCTGTCTGCATAGTGTAGG
TCCAGTTAGGATACGTAGGGCTTCTGACTTTCAGCCGCCATGCGCCTTTGCTCCGTGAACAGCAG
AGGCCCCCAACCGCGCTGTACGCGCAGCTGAGTATCGCCTTTGTCACTCACAGGCAATTACGTCC
GGAGTCGTCGCTTGTACACTCTCCTTGTCCTCGGGTCCCTTACTCTCCCGCTTGTCATAGCCAGC
GACAAACACCACCTGATCTCGATGGCTAGTGGGGAATGACATAGC
Found at i:229641 original size:9 final size:9
Alignment explanation
Indices: 229629--229658 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
229619 CCGACCGAAG
229629 GGAGGAGTT
1 GGAGGAGTT
229638 GGAGGAGTT
1 GGAGGAGTT
229647 GGAGGAGTT
1 GGAGGAGTT
229656 GGA
1 GGA
229659 TTAAAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.57, T:0.20
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 229129 -- 229628
ATATAAAGGGACAGGACCCAGAGGGAGGCTAGTCCGTTAGACCCCAGAGGGTTTTCTTTGCGCGT
AGCACAAAAGAATCGTAGATAGATGCCGCAGCTACGCGCTTTCCGTCATCAGCCTTCGATTGGCA
GCTAACGCGCTTCTTTCTAGCGCTTTCCTGGCCCTACCCGGTCCGGCAGGGGTGATGGCCCCCTG
CCCTCAACCTCCCGGTTCGCGCATAGCGCTCACCCCTACTACACCTCCCGGTACCGGGTTCAGTA
GTGAGAAAGCGGTGGCGTTTTCCTGAAAAAAACCCTTTATTTCTTGAAAAGGCCTTTTAAAGGGC
AGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 229659 -- 230158
TTAAAGTTTAATTTTCAATTAAATGCGCCCCTTTTGGAAGGAAGGAAGCCCTAAAGAACCTTTAA
TTTAATTTCATTGAAAATTCAATGAAATTAAAGTAAAATACATGACTTTAAGCTACCCCTTCGAA
GTGCTGGCCTGCCACCGTGGGTGGGGGCGGGAGTTGGGCTTTAGCCACGTGGCTGGGGTGGGGGC
ACTGTAGTGGTCATAGGGAATAAGGGGCTACGTAGCTCTCCAAACCACCTTCAGCGAGGCCTTGT
AGTATGCTAGATGTATTGTCGTTTCTTTCTCCTGCCGGGGCCTTTTCAGGCGGCCTCTAGGTACC
ACTACTCGGTTGGGAGGTGCCCTCTCCCATTCTTCCTTCGTGAAGTAGTTAGTAACTACCAGCAT
TCTTAGCTCAGTTGGATAGAGCAACAACCTTCTAAGTTGAAGGTCACAGGTTCGAGTCCTGTAGG
ATGCAGAAGGCCCCGGAACGATCGGTGGAGGGGGGGTACAGCTAG
Found at i:230756 original size:35 final size:35
Alignment explanation
Indices: 230710--230836 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
230700 CAGGGTCCGT
* **
230710 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
230745 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
230780 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
230815 AGGACCACTCCGACCTACCGGG
1 AGGACCACTCCGACCTACCGGG
230837 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 230210 -- 230709
AAGTCTTTTCTCGCCATCTCAGAATCACGTAGATATAAAAAGCAGCCGAGGTTAGAGTCTGGAGC
GGTTCTTCAGGCCCTCCTTTCTTCAGCCCTCTCGCCCGTAAGCCATCCCAAGCCATCCCTCAGAG
CCGGCCCTTTCCAGCTTCCTTTTCCTCTTCCCGGGATTAAAACCCTTGAATTTTCAATGAAATTA
AATTAAAGTATTCAACTTGAATTTTCAATGAAATTAAATTAGAGTAACTTTACCGCAAGGGAATC
ATGTAAATAGAATGGCTCACGAACGAATCATTCATTAATATCACGCTGTAAATAAAGAACCACTT
AGTCACTTTTTTAAAGGCGGACAATCCATTTAGCTATTCGGAAATTTTCATTTGGTCTTGCACAA
CCAGGGTTTGGTGTGTAGGTACCAATATTACGTCTTATGATAGTAGGATCACGTAAGGAAACAGT
CGGTATTGATAGCATTCCATTCGCGGTTACACCACCAGGGTCCGT
Right flanking sequence: Indices 230837 -- 231336
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTTATTAATT
CCTGTGAGGTATTCTAGCGATATCGGTGAATCAAAGCCCTCAAGAGAAGAACTCATTAGGGTAGG
GCGCTGTTGATGGCCAGCGCTTCGACCCCGAGTGAGATTGGCCTTGCCGTCCCAAGAAAGTGTGT
TACACTACAGTTTGATCATGGTATAGCCTCTCCTCCCTTTCATGCGGGAAGGGAAGGCGTTTTTT
AAAAGGGTTAAGTTACCAGCAACTTTAATTTAATTTCATTGAAAATTCTAAGAATTTACCTGCCG
GTCGCTTTACGCTACCGGCCCTCCCGGATGTACCCTTTCTTCGGG
Found at i:230846 original size:9 final size:9
Alignment explanation
Indices: 230834--230869 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
230824 CCGACCTACC
230834 GGGAGGAGT
1 GGGAGGAGT
230843 GGGAGGAGT
1 GGGAGGAGT
*
230852 GGGGGGAGT
1 GGGAGGAGT
230861 GGGAGGAGT
1 GGGAGGAGT
230870 TGGCCCTCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.69, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 230334 -- 230833
TCAGAGCCGGCCCTTTCCAGCTTCCTTTTCCTCTTCCCGGGATTAAAACCCTTGAATTTTCAATG
AAATTAAATTAAAGTATTCAACTTGAATTTTCAATGAAATTAAATTAGAGTAACTTTACCGCAAG
GGAATCATGTAAATAGAATGGCTCACGAACGAATCATTCATTAATATCACGCTGTAAATAAAGAA
CCACTTAGTCACTTTTTTAAAGGCGGACAATCCATTTAGCTATTCGGAAATTTTCATTTGGTCTT
GCACAACCAGGGTTTGGTGTGTAGGTACCAATATTACGTCTTATGATAGTAGGATCACGTAAGGA
AACAGTCGGTATTGATAGCATTCCATTCGCGGTTACACCACCAGGGTCCGTAGGACCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 230870 -- 231369
TGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGTTATTAATTCCTGTGAGGTATTCTAGCGATATCGGTGAATCA
AAGCCCTCAAGAGAAGAACTCATTAGGGTAGGGCGCTGTTGATGGCCAGCGCTTCGACCCCGAGT
GAGATTGGCCTTGCCGTCCCAAGAAAGTGTGTTACACTACAGTTTGATCATGGTATAGCCTCTCC
TCCCTTTCATGCGGGAAGGGAAGGCGTTTTTTAAAAGGGTTAAGTTACCAGCAACTTTAATTTAA
TTTCATTGAAAATTCTAAGAATTTACCTGCCGGTCGCTTTACGCTACCGGCCCTCCCGGATGTAC
CCTTTCTTCGGGGCGCGCCTCCTAGCTGAAGGGTAGCTGCCCCGC
Found at i:231938 original size:9 final size:9
Alignment explanation
Indices: 231924--231952 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
231914 TCCTATCGGA
231924 CCAACTCCT
1 CCAACTCCT
231933 CCAACTCCT
1 CCAACTCCT
231942 CCAACTCCT
1 CCAACTCCT
231951 CC
1 CC
231953 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 231424 -- 231923
AACCTTTAATTTTCAATGAAATTAAATTACCCAAAACACGCGTTAGGGATTTCCGCTACGGGATG
GTCAAGAGCTCTTTCGGGGAGTTTTCCGTTCCAGGTTCAGAGTTTTCCCTCCTTTAAAAGCGAAC
TTTTAATTTCGTTAAATTAAATTGAATTAAATAAAGCCCTTTTTTCTTTCTTTAAAATCTGGTTT
TCTTTTTTTGTAGGGGAAAGGCCTAAACGGACTCTTTAACCCTACTAGAGTCTCTCTGTACAAGT
TCCAATTTAGTGACAAGTTTCCATTCAGTACTCCCGGTAGAGTGATAGCACTGCTGCATCACCTC
AATGGGGGGGCTTTATCGGTAGGGAATCCCCGCAGAGGCACTTTTCTGGGAGCAAGAATCCACGA
TTGACACCCCCCCCCACTATTACCAGAAAAACTTAGAAGGGAAGCACCTAACTAGGGCAGAGAGC
ACCTAAACCCAACTCCTCCCTATCGGTCGGAGTGGTCCTATCGGA
Right flanking sequence: Indices 231953 -- 232452
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTATCGGAGCTATC
GCTCGCCCAAGAATTGAATTTTATAGAAGCAATAACCAACCCCTTTAAAACCTGCTCAGCAGTTC
CCTACTCAGGATCTGGGAAAGGCCGGAATAGGTCCTTACTCAGGGAAGGATGCTCATCGAAGATG
GGGTACCTCAGCTGGAGTGGGAAGGTCCTTCCCCAGAGGGGGCCCCTCTTTGCATCGCACACCGT
GGTCCTTCTTCCTATCGTCTCCACCACAACCTCCTATCGCACACTTTATTAAGGGAAAGCGCTCT
TTCAAGCTACGCGCGCTGAGTGAGCCAAGCGTTCTGGGACCAGGGCAGCGCGTACAAAAAAGAAG
AATTCGGTAAGGAAGCCCTTTTCCGGGAGCATGCGCCCGCATAGT
Found at i:237892 original size:39 final size:39
Alignment explanation
Indices: 237835--238053 Score: 309
Period size: 39 Copynumber: 5.5 Consensus size: 39
237825 GACCCTTCGG
* *
237835 TCGGAGTTGTCCTCCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
237874 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
237913 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
*
237952 TCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
1 TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
*
237991 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---
1 TCGGAG-TG--GTCCT-TCGGA---CCAACTCCTCCCTATCGGAAT
*
238034 TCGGAGTTGTCCTTCGGACC
1 TCGGAGTGGTCCTTCGGACC
238054 CTTGGGGGCC
Statistics
Matches: 166, Mismatches: 7, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
36 2 0.01
39 125 0.75
40 5 0.03
42 5 0.03
43 11 0.07
46 18 0.11
ACGTcount: A:0.16, C:0.34, G:0.23, T:0.26
Consensus pattern (39 bp):
TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGAAT
Left flanking sequence: Indices 237335 -- 237834
GAAGAGGATCGATGGGGTCAGGCTAGGGCGGCCTAGCCTCTGTTCCCCAGCCCTCCTCCAGAACC
ACCTACGGAAGCCTTTCGACTCTAGGCTCACCCTCCTGGATCTGGACCGTTTTGGAGGATTAGGC
TTACGTCGGGCCAACTCCTCCCGGTGAGGCGAGGCCTCTGAACCACCCAAGGACACTGTCATGGA
TATGGTTGGCCCCGACTCCCATGGGTCAGAATCCTTGGGGCAGGGTGGCCTAAGCCACCCCGGCG
GGCAGTTAAAAGTAGCGCTGCCAACTCCCCCCACTCCTCCCTTCGGAATTCAGAGTTGTCCTCGC
CTCGGACCCTTCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCC
CTCCGGCAGGAGGACAACAAATTTGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTCCCCCCACT
CCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 238054 -- 238553
CTTGGGGGCCCCTGGCGCCCTAGCGAGGGCTACGCGGCACTATTGTGGTCCGATCCCTCGCCTTC
GGCCCTCGGGAAGCGCCCTTTTTGGGAGAGAGGGGCGCCACTCGACCAACTAGGGGCGGAAGCCA
CTCAACTGATAAGAGAGGGGTCGCAAAAAAACGCTCGGCCCGGATGTTACCCTACCCGGCCTTCG
GCACTTTCTCTCGGCCAGGAGCCTCCTAGGTGGCCACACCCTTTCTTTACAGCCCCCTCGCTCTA
AAGGCCACCACTTTTTTTGGAAGGGCTACGGCATCGATCCTCCTTTATCTGCCCCACTATCGCTG
CTCCAGCCACAACATTGCTGTGATAGCCCCAGCCTGCTGCACTCGGGTCGGCCCTCTGTTCAATA
GGGTGCGGCTGAGCCAGAGTTCACTCAGCAGCAGTCAGCCGTAGGGCAGGGAAGGTTTTGGCTTC
TATCAGATACAGAAAGATACTACGAGTCCTCCGTCCCAGATTCCC
Found at i:240313 original size:12 final size:12
Alignment explanation
Indices: 240282--240313 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
240272 CGGACCCTTC
240282 GGCCTTTTAAAA
1 GGCCTTTTAAAA
240294 GCGCCTTTTAAAA
1 G-GCCTTTTAAAA
240307 GGCCTTT
1 GGCCTTT
240314 CTAAGGCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (12 bp):
GGCCTTTTAAAA
Left flanking sequence: Indices 239782 -- 240281
CGGCCACTCTCGGAAGGGTTGGGGACTTCTCATTCGGGAAACCGCGAAGCCCGACCAAGCATGAA
TCCATGAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAA
GGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGAG
TTTAATTTAATTGAATTGAATTGAATTTACCCGCCCGCCTCTCGTGCCGGGGTAAGTGCCGTAAG
GCAGGCACTTACCCTCGCGCCTCCACCCTTTATCGGGGGTGGTCCCCGTACGTAGGGAGCAACTT
GTGTGGCCGGGGCCTTCTTCCCAACTCCTCCCTTCGTCGGTCGGAGTTGTCCCCCAACTCCTCCA
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACC
GATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTC
Right flanking sequence: Indices 240314 -- 240813
CTAAGGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCAGGTTTTCGC
GCTATGCGCTCCCCTGGCCGACCGACCCCTCCTCCTATCGGGGGGAGTGGCTCGCGTTAGCTCGC
CCCAAAAGTCATGGATTCATGAAGGGGGAAGGCCAACTACAAACCTTACGTGCCCGAAAAAGGGA
AAGCGCCGTTTTCTGAGGAAAACGCGTAGCGTTTTCCGCGGGCGCTACGCGCTTCCCACGCCCTG
CCGCTTAGGCCTTCGGGGTGAACTCATCATCGAATTGGAACATGGTGTTGAGAGGGGGCTTCATC
CAGAAAAGGGATTGGCCCTTTTAGAAGCGGTTCTCCGCCTCACTTTTACCTCTTTGCCGCTAGGA
ATTTCTTGCACACGCGCTTGGCTCTTCCCCCAGTTTGGATTAACTTGATAACCCTCTTGTCTTAA
ATGGTTTTTGTAGAATACTGTACAATACGTTACAGTTCATTGCGT
Found at i:243565 original size:6 final size:6
Alignment explanation
Indices: 243554--243604 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
243544 GCGCACAAAG
243554 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
1 TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC TCCAAC
243602 TCC
1 TCC
243605 CTATCGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.18
Consensus pattern (6 bp):
TCCAAC
Left flanking sequence: Indices 243054 -- 243553
CCTTCCCAGAGAACCGTACATGATACTCTCGCATCATACGGCTCCGTCTCGAGATAGCGCTGATG
AGTCGGCCCCCTATGACAACTGTTTACGCGCTCCGCTAAAGCGGGCTTTATCTTAAAGGGGAAGC
GCGCTGTTTGGGAGAGGGGGTAGCAGCCGCACAATCGTGCCAGCCTTCTCTATTGGAAAGGGAAA
CGTTCCTTATCCGACTTCGCAATCAAACGCTGCTGAACCGGCGTTTTCACCCGTTTGCTTGCGGG
GGGGCACTATAGTGCGCGTGGCGCTTCCACAATAGTGGTCGAGTGCCTGGCAAACCGGGAGATTG
TATGTCGACCTGCCCGGGTACACCAGGCAGCAGGTCGACATACACTCGACTGGAAGGAGAGGGCA
AAGCCAAGCCGTGGAGGCAAGCACCGTAGCGCTTACCTCGCCGTAGGCCGCGCATAGGGGGCGGC
CCCCTGTAGTAGGGGCATAGTTGTTGAGGCGCGTAGCGCACAAAG
Right flanking sequence: Indices 243605 -- 244104
CTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTTGTCCTGAACGGACCCTATCGGGAGTGT
AGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCGGAGGACCAACTCCTCCCTACGG
TCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGTTGTCCTCACTTCGTTCGGACCC
TTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATGGGCCAACTCCTCCCTAGGAATT
ATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGGAGTTGTCCTCGCTTCGCTCGGA
CCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGG
TTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCC
TCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Found at i:243639 original size:26 final size:26
Alignment explanation
Indices: 243603--243667 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
243593 AACTCCAACT
243603 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
243629 CCCTATCGGGAGTTGTCCTGAACGGA
1 CCCTATCGGGAGTTGTCCTGAACGGA
243655 CCCTATCGGGAGT
1 CCCTATCGGGAGT
243668 GTAGGCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (26 bp):
CCCTATCGGGAGTTGTCCTGAACGGA
Left flanking sequence: Indices 243103 -- 243602
CGAGATAGCGCTGATGAGTCGGCCCCCTATGACAACTGTTTACGCGCTCCGCTAAAGCGGGCTTT
ATCTTAAAGGGGAAGCGCGCTGTTTGGGAGAGGGGGTAGCAGCCGCACAATCGTGCCAGCCTTCT
CTATTGGAAAGGGAAACGTTCCTTATCCGACTTCGCAATCAAACGCTGCTGAACCGGCGTTTTCA
CCCGTTTGCTTGCGGGGGGGCACTATAGTGCGCGTGGCGCTTCCACAATAGTGGTCGAGTGCCTG
GCAAACCGGGAGATTGTATGTCGACCTGCCCGGGTACACCAGGCAGCAGGTCGACATACACTCGA
CTGGAAGGAGAGGGCAAAGCCAAGCCGTGGAGGCAAGCACCGTAGCGCTTACCTCGCCGTAGGCC
GCGCATAGGGGGCGGCCCCCTGTAGTAGGGGCATAGTTGTTGAGGCGCGTAGCGCACAAAGTCCA
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACTCCAACT
Right flanking sequence: Indices 243668 -- 244167
GTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCGGAGGACCAACTCCTCCCTAC
GGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGTTGTCCTCACTTCGTTCGGAC
CCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATGGGCCAACTCCTCCCTAGGAA
TTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGGAGTTGTCCTCGCTTCGCTCG
GACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATTTTCAATGAAATTAAATTAAA
GGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACT
CCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGCCCTCCTATCG
Found at i:244155 original size:34 final size:35
Alignment explanation
Indices: 244070--244161 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 35
244060 TCCCACTCCT
244070 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
244105 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* * *
244140 CCC-TTCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
244162 CTATCGGAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 16 0.30
35 38 0.70
ACGTcount: A:0.10, C:0.32, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 243570 -- 244069
ACTCCAACTCCAACTCCAACTCCAACTCCAACTCCCTATCGGGAGTTGTCCTGAACGGACCCTAT
CGGGAGTTGTCCTGAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGT
TGTCCTCCTGCCGGAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCC
GATAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGG
TCAGACCCTTATGGGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGG
CGGAATTATTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCA
AGAACCTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAA
AGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 244162 -- 244661
CTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGG
AATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGAC
CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
ACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCC
CTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGACCAACTCCTCCC
TATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCT
TCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATC
Found at i:244244 original size:82 final size:82
Alignment explanation
Indices: 244148--244790 Score: 1223
Period size: 82 Copynumber: 7.8 Consensus size: 82
244138 GACCCTTCGG
*
244148 TCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
244213 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
244230 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
244295 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
244312 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
244377 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
244394 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
244459 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
244476 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTTCGGAC
244541 CAACTCCTCCCTATCGGAAT
63 CAACTCCTCCCTATCGGAAT
244561 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
244626 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
244643 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTTCGGAC
244708 CAACTCCTCCCTATCGGAAT
63 CAACTCCTCCCTATCGGAAT
244728 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
244791 CTTGGGGGCC
Statistics
Matches: 554, Mismatches: 1, Indels: 12
0.98 0.00 0.02
Matches are distributed among these distances:
82 390 0.70
85 164 0.30
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 243648 -- 244147
GAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCG
GAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATG
GGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGG
AGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATT
TTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTA
AAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 244791 -- 245290
CTTGGGGGCCCCTTGCTGGGGCCAAGCTGCCGGCCCCTAACCACCACATCATGAAGTGGATGGCG
GGCCCCACCACCACCTACAAAGTGGGTGGGTAGGGAGTTGGGTTTAAGCGCGTAGCGCTTCACAG
AATTGACCTTCAGCGCTGCTTCCCTTAGCTGCCATAAGGCGGCACCCTGTCCCCTCAGGAGAGGA
GCCCTGCACTCGACTGAAAGGAGAGGTCTTTGCGCCCGGCAGACGAGTGCTAAACTACCACCGGG
CACTATAGTGGAACTATAGTGCGCTTGAAAAGCGTTTTGAAGCGGCAGAGCGTAGCACTTAAGTA
CGCCCCCATGGATGCCGGAGGCCCTTCCTCAAGAAAGGGGAAGCGTAGCTTCCCGCAGAAATGCA
GGGCCTTTATTGGGATAAAGGGCCACTCCCCTCGTTGTTACTTCGTCAAAGGAAATGCTTGGCTG
AAAGGGAGCTGTGAGCCCCGAGGAAGGGAAGGGGCGCCCCCCTCA
Found at i:244326 original size:164 final size:165
Alignment explanation
Indices: 244148--244790 Score: 1227
Period size: 167 Copynumber: 3.9 Consensus size: 165
244138 GACCCTTCGG
*
244148 TCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-TCGGAGTTGTCCTTCGGACCA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
244212 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
66 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
244277 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
131 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
244312 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-TCGGAGTTGTCCTTCGGACCA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
244376 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
66 ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
244441 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
131 AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
244476 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-A-TCGGAGTTGTCCTTCGGAC
244541 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
64 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
244606 GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
129 GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
244643 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTTCGGAC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGG-A-TCGGAGTTGTCCTTCGGAC
244708 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
64 CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
244773 GGAGTTGTCCTTCGGACC
129 GGAGTTGTCCTTCGGACC
244791 CTTGGGGGCC
Statistics
Matches: 475, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
164 206 0.43
167 269 0.57
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (165 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGATCGGAGTTGTCCTTCGGACCA
ACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGG
AGTTGTCCTTCGGACCAACTCCTCCCTATCGGAAT
Left flanking sequence: Indices 243648 -- 244147
GAACGGACCCTATCGGGAGTGTAGGCCAACTCCTCCCTTCGGAATTCGGAGTTGTCCTCCTGCCG
GAGGACCAACTCCTCCCTACGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGATAGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTTTAAAGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTATG
GGCCAACTCCTCCCTAGGAATTATTTGTTGTCCCCCAACTCCTCTTTAAAGGCGGAATTATTCGG
AGTTGTCCTCGCTTCGCTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCTTTAATT
TTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTA
AAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
Right flanking sequence: Indices 244791 -- 245290
CTTGGGGGCCCCTTGCTGGGGCCAAGCTGCCGGCCCCTAACCACCACATCATGAAGTGGATGGCG
GGCCCCACCACCACCTACAAAGTGGGTGGGTAGGGAGTTGGGTTTAAGCGCGTAGCGCTTCACAG
AATTGACCTTCAGCGCTGCTTCCCTTAGCTGCCATAAGGCGGCACCCTGTCCCCTCAGGAGAGGA
GCCCTGCACTCGACTGAAAGGAGAGGTCTTTGCGCCCGGCAGACGAGTGCTAAACTACCACCGGG
CACTATAGTGGAACTATAGTGCGCTTGAAAAGCGTTTTGAAGCGGCAGAGCGTAGCACTTAAGTA
CGCCCCCATGGATGCCGGAGGCCCTTCCTCAAGAAAGGGGAAGCGTAGCTTCCCGCAGAAATGCA
GGGCCTTTATTGGGATAAAGGGCCACTCCCCTCGTTGTTACTTCGTCAAAGGAAATGCTTGGCTG
AAAGGGAGCTGTGAGCCCCGAGGAAGGGAAGGGGCGCCCCCCTCA
Found at i:246011 original size:39 final size:43
Alignment explanation
Indices: 245925--246020 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 43
245915 GCTGCCCTGG
*
245925 CCAACCCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTTG-CCTCCTGTC-G-GGA
*
245971 CCAACTCCTCCCTCTCGGAATTCGGAG-TG-GTCCT-TC-GGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCTCCTGTCGGGA
246010 CCAACTCCTCC
1 CCAACTCCTCC
246021 AACTCCTCCC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
39 14 0.29
42 2 0.04
43 4 0.08
45 2 0.04
46 26 0.54
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.24
Consensus pattern (43 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCTCCTGTCGGGA
Left flanking sequence: Indices 245425 -- 245924
AGTCGGCTGAACAGTTTGTTAAGCTATGGCGGTAATGGATTCTACGTAATAATTGCACCCACATC
CGATTGAGGGTGGTAATGGTACATAGTCACCCATTGGCCTTTTCGCACTGCTCGAGGCGCCAACG
GGGGACACGTGAGTTATACGCCGAACCTTCTGACTAACCTTACGGGGGCGATGCCTAGTAGAAAC
TTTTTAAGTCACTTCACTCATTCATGAAGTCTGGATCATTTTCGTCCGTGGGACAGGCAATGGGA
GGGTGCTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCATGTCAAACACACACAGCGGC
CCAACTCCCGGACCCACCCACTTTGTCACTACTATGGTGGTGGGGCTTTAGCCACGTCGCTGGGG
TAGGGGCCGGGGTGCGGACCCGGGCGGGTAGCGCTACGCGCTACCCTGGCCCCAGCAAGGGGCAG
GGGGCGCGTAGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGG
Right flanking sequence: Indices 246021 -- 246520
AACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGGAAGAC
AACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAACTCCGACCTACGGGAGGAGTTGGGCTTTA
GCCACTCAACCGACCGAAGGGAGGTTGAGGGGCTTTAGCCACTGGCTGGGGTAGGGGCCCCAGCC
AGGGTCCGGGAGTTGTGGGCGTTAGGAAGCCCCCAACTTTCTTTGTAGGTGGTGGTGGGTAGTTC
CGTTGGGCGGGGCCCCCCTAAGGGGGGCCCGCGGTGTCCCGTGCCGGGCCACCCTGCCCCTAGCG
TAGCCCCAAAAACCTTAGTTTCCTCGTCGTCCAGCCTCAACAGTCGTAGGTTGTTCCGCTCAAAA
TCTTCTTCTCTTCTTCTGGATTACCCCGCCGCCCTCCGACGTTGTTTCGTCCTCTAGCCAAGTCT
CCACTTCGCAATCTAACTCCCTTCTGTCCTTCGTCGCTAAGTGAG
Found at i:247135 original size:38 final size:38
Alignment explanation
Indices: 247084--247249 Score: 332
Period size: 38 Copynumber: 4.4 Consensus size: 38
247074 CGCTACTCCC
247084 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
247122 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
247160 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
247198 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
1 CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
247236 CCGATAGGGAGAGG
1 CCGATAGGGAGAGG
247250 TGCCGGAATA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 128 1.00
ACGTcount: A:0.29, C:0.23, G:0.38, T:0.10
Consensus pattern (38 bp):
CCGATAGGGAGAGGGGTGAGCTAACGCGAACCACTCGA
Left flanking sequence: Indices 246584 -- 247083
CCGTTCTCTTTTCGGGGTTCCCCCACCTACCTGACGGTGGGGGAACCCGAGCCCCCTCTTCTGAG
GGGTCTCCCCCAACCCAGTAATTTGAGAATTCAATCCGCGCTTTAAAAGGCTTTTTCCGTCACTA
TACCGAAACAAATCACTCCGTTTCGTTCCAGCGACAACTAGAATACTCGCCAAAGGCCGGAACCG
ACCTGCTAGCCGCCTTCGGCAGGGGGGTGCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCC
TGCCCTCAGGACCGGTACGATTATCCCTGTCAACTCAATCGGTGGCTGACGAGTCTACGTCCATC
CCTGGGCGTCGGAGTTTGACCCGCCACCCTTGTAGCCGTCCCCTGGAATTCGCGCAAGTGTGTCT
GCACCCCCGGCGACTTGACGGAAAAGGAGGGAAGCTACCGAGGTTTTTCACGAGACCCTCACCCG
GCCCGTTAGGTCGCCCGATAGGGAGAGAGGCTTGCCGCTACTCCC
Right flanking sequence: Indices 247250 -- 247749
TGCCGGAATAGCTCGACCGGGTTCAACCCCCGGGGCTAGCGTAGCGCCGGGGAACTATAGTGCGC
TACGCGCTTTACCCGGTCCCCTGGGGAGACCACTATGGGTAGGGGGAACTACAGCAGTGTGGAAA
GCGCTACGCGCTTTCAACTGAAGTCACTAGAATCGCTACGCGCTTCCCCTTGTAGTGCCCCCCAT
GGGGCCAGGGCTTTAAAGCCCCTTCATCAGAAGTGGCCCAACTTTATGAAGTGCGGGCAGCGCCG
GCCTGGTTCCCGAATCACTATGTGCTGCACTCGACCGATAGGCCGAGGGACGACGAAGTTACTAC
TCGACCGATAAGTGGGTAGGGAGTTGGGCCGGTTTTCAGCGCGTAGCGCCTCAACCACTATAGTG
CCCCAACCTCCGTTACGTACGCGCTTGCCCTGTTTCTCGCAGCCAAACCTTCTTTATCCTCCACC
TAGGAGCACCTCTCCTGCATGTCCATACAGGACTCGAGTAGGCGG
Found at i:249391 original size:20 final size:21
Alignment explanation
Indices: 249345--249402 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
249335 TTGCCGGTGA
*
249345 GAGAGCGAGTCCGCCTGGGAG
1 GAGAGTGAGTCCGCCTGGGAG
*
249366 GAGAGTGAGTCCGCCTGGG-T
1 GAGAGTGAGTCCGCCTGGGAG
249386 GAGAGTGAGTCCGCCTG
1 GAGAGTGAGTCCGCCTG
249403 AAAAGGCGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (21 bp):
GAGAGTGAGTCCGCCTGGGAG
Left flanking sequence: Indices 248845 -- 249344
TAACTAAATTTTGGGTCGGGCGGGGGTGGTGGTCCCAAAGTGGGTGGTGGGGCGGCCCTTCTCTT
TCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCAT
CTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGC
TCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTT
AGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGT
TTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTCTCCCTACC
GAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATGTCCCCAAT
TGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGA
Right flanking sequence: Indices 249403 -- 249902
AAAAGGCGTCAACACCGGCGATTCAACTTCATTCGCGCTCCGAAGGGCCGATTGCCGCACCTTTT
AAAGGCCTATCGTCAATGGAAACATGGCCTGTTTCAGGTGGCAGCCTCCCTTCGCCCCTTCTCGT
AGCATCCGCAAACCTTTGCTCTACCTTCCCGGCAAGCGGGAGCAGCAATTCAAGGGAAAGTGGAA
GCAGCGATTGGTGGGTCCTTTCTGTTCGGTAAAAGCTATTTGGTTTCCCGGCTTTGCGGAAGGCA
AAGATTCCTTCCTTTGCGGAAGCTGCGACCTGCTTTGTGGGGAAGCATTTAAGTGCCGCTCCTTC
GCATCTGCAGAATTTGCTCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACTTTAAAGGGCCCACCTCCCCTTGAAGGGAA
AGTAAGACATGAGTGCCGCCTAGTCGCGATATCCTCCCCGGGGGC
Found at i:252126 original size:43 final size:41
Alignment explanation
Indices: 252032--252132 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 41
252022 ATTCCAGCGA
* *
252032 AGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCC-A-AGG
*
252075 AGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCC-AGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACT-CCAAGG
252116 TCAGGACCACTCCGACC
1 --AGGACCACTCCGACC
252133 TACCGGGTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
41 3 0.06
43 46 0.90
44 2 0.04
ACGTcount: A:0.24, C:0.30, G:0.34, T:0.13
Consensus pattern (41 bp):
AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCCAAGG
Left flanking sequence: Indices 251532 -- 252031
CCTTTTGCTTAGACTAGTCACCTAGGTTATCCAGCCTCCCCCGCTCTGGACAGTCAAAATAGAAC
TTCGTAGCATTAGGAAGGAGCTCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTAC
GTACACCTCCCCATACCCACTAGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAA
TAGCACTACGCGCTTTCCCACGGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATA
CGCGCTAATGGAATCGAATCCATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCT
AGTTCCCCCAACCCTTCAGGGTCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGC
GTCTAGGCGAAAGGGGTAGGGGGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCG
CCTTCTTTCTGGCTGTTTCTGTCCAAGAAAAACGGATTCCAGCGA
Right flanking sequence: Indices 252133 -- 252632
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGAC
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACG
AAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
Found at i:252164 original size:35 final size:35
Alignment explanation
Indices: 252118--252753 Score: 1272
Period size: 35 Copynumber: 18.2 Consensus size: 35
252108 CTGCCAGGTC
252118 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252153 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252188 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252223 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252258 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252293 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252328 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252363 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252398 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252433 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252468 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252503 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252538 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252573 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252608 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252643 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252678 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252713 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
252748 AGGACC
1 AGGACC
252754 CTATCGGTCG
Statistics
Matches: 601, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 601 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 251618 -- 252117
TCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTACGTACACCTCCCCATACCCACT
AGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAATAGCACTACGCGCTTTCCCAC
GGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATACGCGCTAATGGAATCGAATCC
ATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCTAGTTCCCCCAACCCTTCAGGG
TCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGCGTCTAGGCGAAAGGGGTAGGG
GGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCGCCTTCTTTCTGGCTGTTTCTG
TCCAAGAAAAACGGATTCCAGCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATA
GGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGTC
Right flanking sequence: Indices 252754 -- 253253
CTATCGGTCGGAGTGGTCCTCCTGTCGGAGGACCCTAGAATGACTAAATTCGCTAGGCAAACGAC
AGGGTGATGCGGGATGCACAGAGCAGCTTACTTTGCGCAAGCTAAGCTAGACGCAGGCACTTCGT
AGTCCGATCACTCTCGCCGCTACCTGCACCTGCTCGCGCTTGTTCCGTTCCTTCCCACCTGCCCC
GCACCACCGAGAGCGCCCACCTAGACTCTTGGCCAAAAAGAATACTTTTCACTCAGGCTTGTCGG
TTCAACCAACCTCGTTAGCCCCCTTAAAAGTCTCGGGTCAAAGCCCTCCCTTCGAAGTGACTTCG
GAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCC
ATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCT
TTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAA
Found at i:253589 original size:10 final size:10
Alignment explanation
Indices: 253574--253631 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 10
253564 ATCGTCTAAG
253574 GTCTAAGATC
1 GTCTAAGATC
253584 GTCTAAGGACGAATC
1 GTCT-A--A-GA-TC
253599 GTCTAATGATC
1 GTCTAA-GATC
253610 GTCTAAGATC
1 GTCTAAGATC
*
253620 GTCTAGGATC
1 GTCTAAGATC
253630 GT
1 GT
253632 GATCGTCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 19 0.46
11 9 0.22
12 3 0.07
13 1 0.02
14 3 0.07
15 6 0.15
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (10 bp):
GTCTAAGATC
Left flanking sequence: Indices 253074 -- 253573
CTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATT
TACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGT
TTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGC
TCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAG
CCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAG
TTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTC
AAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAA
GGCCTTTAAAAGTCGTATAAGCCTTTAAATGACAAATCGTCTAAG
Right flanking sequence: Indices 253632 -- 254131
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:253619 original size:36 final size:36
Alignment explanation
Indices: 253563--253645 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
253553 TTAAATGACA
253563 AATCGTCTAAG---GTCTAAGATCGTCTAAGGA-CG-
1 AATCGTCTAAGATCGTCTAAGATCGTCT-AGGATCGT
253595 AATCGTCTAATGATCGTCTAAGATCGTCTAGGATCGT
1 AATCGTCTAA-GATCGTCTAAGATCGTCTAGGATCGT
*
253632 GATCGTCTAAGATC
1 AATCGTCTAAGATC
253646 ATCTGATTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
32 10 0.23
33 1 0.02
35 4 0.09
36 20 0.45
37 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (36 bp):
AATCGTCTAAGATCGTCTAAGATCGTCTAGGATCGT
Left flanking sequence: Indices 253063 -- 253562
CTTCGAAGTGACTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGT
GAAGCCGGATTTACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGAC
CGGGAGGTAGTTTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGC
CTTTAAAAGGCTCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCC
AGAGTGAGTAGCCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTT
TCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAA
TCCCGGATTTCAAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCAC
TTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCCTTTAAATGACA
Right flanking sequence: Indices 253646 -- 254145
ATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCGGACGATTCTCCGTA
GAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATGATGGGCTGCCAGTT
CCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGAATTAGTTAGGCACT
GAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCTGAATGGGCACT
GCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAATTGCCGGTTCGGAT
GATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCAAGAGAAACCAATTC
GGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTAAAGTTCGGAAAGCT
GAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCAC
Found at i:253645 original size:10 final size:10
Alignment explanation
Indices: 253596--253631 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
253586 CTAAGGACGA
253596 ATCGTCTAATG
1 ATCGTCTAA-G
253607 ATCGTCTAAG
1 ATCGTCTAAG
*
253617 ATCGTCTAGG
1 ATCGTCTAAG
253627 ATCGT
1 ATCGT
253632 GATCGTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (10 bp):
ATCGTCTAAG
Left flanking sequence: Indices 253096 -- 253595
GCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCCATTGCTAGTCCCAACCA
ACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCTTTAACTCGAACCGAGTT
AAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGCTCAGCGCTACGCGCTTCACAGC
GCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAGCCACGTCGGTCCGATTCTGGGT
GGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGA
AAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATT
TTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGC
CTTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGA
Right flanking sequence: Indices 253632 -- 254131
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:253937 original size:38 final size:37
Alignment explanation
Indices: 253857--253949 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
253847 TTAAAAGGCT
* *
253857 GAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCT
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
* *
253895 GAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCG
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
*
253933 GAATGGGCAATGATGAT
1 GAATGGGCACTGATGAT
253950 AGAATAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
37 5 0.10
38 44 0.90
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.25
Consensus pattern (37 bp):
GAATGGGCACTGATGATGGGCTGCCGTTCGACGTGCG
Left flanking sequence: Indices 253357 -- 253856
GCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAA
AACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATTT
TTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCC
TTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGAATCGTCTAATGATCGTCTAAG
ATCGTCTAGGATCGTGATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTC
GATCGGTCGACACCGGACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGG
GAGGGAAACATTATGATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTC
CGCAGTTCGGACTGAATTAGTTAGGCACTGAATTTTTAAAAGGCT
Right flanking sequence: Indices 253950 -- 254449
AGAATAATTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACT
GAACGCAAGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACG
GCCTTTAAAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCA
CTTTTTTACGGGTAGGGAAACTACGCTTAGGCCACGAACGAGGCAAAGTCTGGCAGCAGCCAATC
GCCAAGTCCCGAAGACCCGGAGAATCTTTTGGAATCCGCGCCCCGTAGCCCTACATGATGGGGTC
CTCCTCGTAGCCCTCGTAGGCCTCGCGTCAACAAGGCCTCTCCGATTTCTGGACTCAGAAGTGAA
TTCCACTGCGTGCACTTATCACTGCTTCGATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAA
GAACCTTTAATTTTCAATTAATTGAAAATTAAAGTTACTTTGGGG
Found at i:254906 original size:34 final size:34
Alignment explanation
Indices: 254868--255005 Score: 276
Period size: 34 Copynumber: 4.1 Consensus size: 34
254858 TCCCACTCCT
254868 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
254902 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
254936 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
254970 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
255004 CC
1 CC
255006 AGCGTTACTT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 104 1.00
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 254368 -- 254867
GATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAAGAACCTTTAATTTTCAATTAATTGAAAA
TTAAAGTTACTTTGGGGGAGACATTGAAATTCGCGCTACGCGCTTCCCTGGCAAGGGGTGGAACT
ATAGTGCACCCTCGCCCTATTCGAGACTCAAAAATCAATGCAGAGGCTATCTCGACTAAGTAAGA
TCGGGCAATAGATGTAGAAGAAGTCAAGTCCCGGCCTGGGCCAGTGTGGGAGGCCGAACCAAACT
GTAAGCTACCGGCCTTCGCTCGAACCCTTTAAAAGGGCTCGGTAATTTAAAAGGCAGCGCTACGT
GCCTAGACCCGGGCGGATGGAGGGTGGTCTTAGACCCTTTTAAAGGTGCTAGCGTTAAAGTACGA
AACCGAAAATGACTTGTATAGACGGTTCACCAAGGCGTACATGGCTAGCTACCGCGTACTGTGAA
ATTAACTTTCGAAGTGACCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 255006 -- 255505
AGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGG
TGTGAAATTAACTTTCTTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGC
CTTGCGGACTACTCGATGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCC
CGATAGGGGGAGGGGCGACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGG
AAAGCGCTACGCGCACCCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTAC
GCGCGCACCCACTACGTAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAAC
ACGGCAGGTAGGCCCCTACTTTCAGTGCCGATATTCGTTCGATGG
Found at i:255615 original size:24 final size:24
Alignment explanation
Indices: 255587--255635 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
255577 TCGCACTTGA
*
255587 CAGCTTAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
255611 CAGCTCAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
255635 C
1 C
255636 TGTCTCAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.41, G:0.08, T:0.22
Consensus pattern (24 bp):
CAGCTCAACGAACTACTTCCCACT
Left flanking sequence: Indices 255087 -- 255586
AGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGGTGTGAAATTAACTTTC
TTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGCCTTGCGGACTACTCGA
TGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCCCGATAGGGGGAGGGGC
GACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGGAAAGCGCTACGCGCAC
CCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTACGCGCGCACCCACTACG
TAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAACACGGCAGGTAGGCCCC
TACTTTCAGTGCCGATATTCGTTCGATGGCAGTTCGTCCTTACGGCAGGTCCTCTCGTTGTTCGC
TCGCGTAGCGCTAAGCGGTAGCATCTATATACGGCTCGCACTTGA
Right flanking sequence: Indices 255636 -- 256135
TGTCTCAGTCGTTCCCAGTCAGCTGAGCAGTCAGTCTTCCCAGCTTCGGCGTGCCCAACCATTAT
TGGATTCCTCTCTCCGTTCCGTACGAACCACTGACTCCTTACAAAAAGGGGGAGAAGCGGTTTCA
AAAAGGCCGTTGAAAGGGAGAAGAGGAAGGATGTCGAAGCTAATAAGGGATACGTTGGTGCTGAC
ATCGACTCGGTGGGGGACCCATTCCGCTCTCCACCACCAGGACGGGCCACCACCACCTTCTCTGT
TCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAGTACGTGACTTTA
AAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATTGAAAGTACTTTA
ATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATTAAATGAAATTAA
AGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCAC
Found at i:256445 original size:43 final size:43
Alignment explanation
Indices: 256384--256471 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
256374 GCCGTCGCGA
256384 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
256427 AAACC-TAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
256470 AA
1 AA
256472 CCCCACTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (43 bp):
AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 255884 -- 256383
CACCTTCTCTGTTCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAG
TACGTGACTTTAAAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATT
GAAAGTACTTTAATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATT
AAATGAAATTAAAGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCACGTGTGGGA
CTACAGGACCACTGGGTAGGGCCCATCGTATCACGAGTTTGTAGGTGGTGGTGGACATTACTGAC
ATAACAGAGTCGGATCCTCGGCCTATCGGCCTCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCC
TCCAATGAACTCAGCCAGCCTGACTCCTTGATGCGGTGGTCGATATGGCCCAACTCCTCCCTATC
GGTCGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 256472 -- 256971
CCCCACTTTAATTTTCAATGAAATTAAAAAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGC
TCAGGTCGGAGAAACGTCCGCTGGTGGCTAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGC
CCCATAAAGTCCGCACATTAGCCTAATACAGCCCCGGATAAGCGTCCGCACATTAGCCTGATACG
GAGCCGGATAAGCGTCCGCTTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAG
CGTCCGGAGAAGCGACTTTTAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTC
CGGAGAAGCGTCCTCATTGTTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCT
TCCGGAGAAGCGGCCCCGTACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTT
ACGAGCCCTGGCAACGCATGGATTGTCCGTGCATTAGCCGGCAGA
Found at i:256650 original size:35 final size:35
Alignment explanation
Indices: 256610--256685 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
256600 GCCCCATAAA
*
256610 GTCCGCACATTAGCCTAATACAGCCCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
* * *
256645 GTCCGCACATTAGCCTGATACGGAGCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
256680 GTCCGC
1 GTCCGC
256686 TTCCGGCGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (35 bp):
GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
Left flanking sequence: Indices 256110 -- 256609
AAAAATCAACGATGGAAACCTTGCACGTGTGGGACTACAGGACCACTGGGTAGGGCCCATCGTAT
CACGAGTTTGTAGGTGGTGGTGGACATTACTGACATAACAGAGTCGGATCCTCGGCCTATCGGCC
TCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCCTCCAATGAACTCAGCCAGCCTGACTCCTTGA
TGCGGTGGTCGATATGGCCCAACTCCTCCCTATCGGTCGGAGTGGGGGGAGTTGGCCCTTTAAAG
GAGCGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAA
GTAACCTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAA
AAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGCTCAGGTCGGAGAAACGTCCGCTGGTGGC
TAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGCCCCATAAA
Right flanking sequence: Indices 256686 -- 257185
TTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAGCGTCCGGAGAAGCGACTTT
TAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTCCGGAGAAGCGTCCTCATTG
TTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCTTCCGGAGAAGCGGCCCCGT
ACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTTACGAGCCCTGGCAACGCAT
GGATTGTCCGTGCATTAGCCGGCAGACAGAGCCGGAAATCTGTAAACGTACTCTATGGAGAAACG
GCCTCTTGCGGCTAGAAAGGGGGCCTCGATTCCACTCGATGGTTTGGAAAAGGGGCTTTAGCCTG
TCGCCCCTAACCACCACCACCCATAAATGGATGAATGGGTGGTGGCCTTCAAAGGGGCGACAGTA
GGGAAAATGGATTGATGCTCAACCGGGAGAATCCGTAGAATATCG
Found at i:263920 original size:33 final size:33
Alignment explanation
Indices: 263878--263940 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
263868 GCCTTTTTAA
*
263878 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
1 AAGGGTCCGAACGAAGCGAGGACAACTCCGCCG
*
263911 AAGGGTCCGAACGAAGTGAGGACAACTCCG
1 AAGGGTCCGAACGAAGCGAGGACAACTCCG
263941 ACCTACCGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.35, T:0.08
Consensus pattern (33 bp):
AAGGGTCCGAACGAAGCGAGGACAACTCCGCCG
Left flanking sequence: Indices 263378 -- 263877
AGCTGTCAGACACTGTAGCAGCACACGTAACCCCCTGAATTTGACCCTAAGGTTGGGAGAACCCT
CTTTAACGTAATCAATTAAGACCTAATTCGCTCACGAACCGGGAATTTAAGGGCTTCGAAGCAAG
CTTCGTATCTCTCCGCCTCTCGCGAAAAGGCGCGAAGCGGTTGAAGAGTCAAGCACTTATTTCAG
AACTCTCAAGGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGTGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGATAGGGAGGAGT
TGGTCCGATAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGA
GGAGTGGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTA
AAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTTTTTAA
Right flanking sequence: Indices 263941 -- 264440
ACCTACCGGGAGGAGTGGGGGGAGTTGGCAGGGTGGCCCGGCACGGGACACCGCGGGCCCCCCTT
AGGGGGGCCCTGCCCAAACATGCCAGGGGTCGTTTAAATTAAATTAAATTAAAGTGATTTAACCC
GCAAGCAAGGGTGACAACTATCGAAGCGTGGGGCGCCAAAGCAGCGTGGGATGACGACCGGAGGG
CGTACGCACCACCGCCGCAAGAGCGCGGAGCTACAGCAACCTCAAAGGGGGGTCTGAGGGCCGGG
AGCCTTGGCCCCCCAGAAGAATCGACGCGACGGGGGCCTACAGCTAGGCGCCCCCCTACTACGCA
GGGCCTATCGAAACGTGGGGCGCCAAAGCAGCGTGGTGGGGCGTAAGCACCGCCAAAGCTTGAAG
GGGTGACAGTCGAAAAAGCTAGGACTTAGCTAGCCCCCTATAGTGCGGCTTTTTCCTACCCGGCC
CTGGAGTCCCGAGGAAGCGGTGACGAGGAGGTGTCACCACCTGCC
Found at i:266775 original size:27 final size:27
Alignment explanation
Indices: 266745--266797 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
266735 GGAGGCCAAC
266745 CCAACTCCTCCCTTCGGTCGGAGTTGG
1 CCAACTCCTCCCTTCGGTCGGAGTTGG
266772 CCAACTCCTCCCTTCGGTCGGAGTTG
1 CCAACTCCTCCCTTCGGTCGGAGTTG
266798 TCCTCCGGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.11, C:0.38, G:0.25, T:0.26
Consensus pattern (27 bp):
CCAACTCCTCCCTTCGGTCGGAGTTGG
Left flanking sequence: Indices 266245 -- 266744
ACAACGGCATTCACTACGGAAGCGTGAACCACAGCGAATTCAGTGGTTCACTGCCCGCGAATAGC
AGTAATTGAACCCGCCAGATTTATTGCCTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCC
CGCATGTAGGTGGTTGTTCTGGTGTCTAGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTA
AGGCCCAAATCTCCCCACAGCGGCATGTAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTA
CCATTCCCCCAATTGTTGATCCTCTGTTAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTG
GCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACAT
ATTATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGG
CCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAAC
Right flanking sequence: Indices 266798 -- 267297
TCCTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCAC
TTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATT
Found at i:266832 original size:36 final size:36
Alignment explanation
Indices: 266772--266896 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 36
266762 TCGGAGTTGG
266772 CCAACTCCTCCCT-TCGGTCGGAGTTGTCCTCCGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
266807 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCT-C---C---GGA
*
266850 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTGCGGA
1 CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
266886 CCAACTCCTCC
1 CCAACTCCTCC
266897 AACTCCTCCC
Statistics
Matches: 81, Mismatches: 1, Indels: 15
0.84 0.01 0.15
Matches are distributed among these distances:
35 13 0.16
36 31 0.38
37 1 0.01
39 1 0.01
40 1 0.01
43 34 0.42
ACGTcount: A:0.14, C:0.39, G:0.22, T:0.25
Consensus pattern (36 bp):
CCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCGGA
Left flanking sequence: Indices 266272 -- 266771
ACCACAGCGAATTCAGTGGTTCACTGCCCGCGAATAGCAGTAATTGAACCCGCCAGATTTATTGC
CTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCCCGCATGTAGGTGGTTGTTCTGGTGTCT
AGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTAAGGCCCAAATCTCCCCACAGCGGCATG
TAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGT
TAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATC
TCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTA
ATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCC
AGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGG
Right flanking sequence: Indices 266897 -- 267396
AACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCC
TATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTC
CCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGG
GCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGT
TGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCC
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTAT
Found at i:266843 original size:21 final size:22
Alignment explanation
Indices: 266812--266880 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
266802 CCGGACCAAC
266812 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
* ****
266834 TCCT-CCTATCGG-AGGACCAAC
1 TCCTCCCTATCGGTCGGA-GTTG
266855 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
266877 TCCT
1 TCCT
266881 GCGGACCAAC
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 3 0.09
21 12 0.35
22 16 0.47
23 3 0.09
ACGTcount: A:0.13, C:0.35, G:0.23, T:0.29
Consensus pattern (22 bp):
TCCTCCCTATCGGTCGGAGTTG
Left flanking sequence: Indices 266312 -- 266811
TAATTGAACCCGCCAGATTTATTGCCTAGTCCCTGTTCGGTGAATACGTTGAGGGACGAGGCCCG
CATGTAGGTGGTTGTTCTGGTGTCTAGCCTTGCTCTCGAGATCGCTAGTGCAGAGTTGACCTAAG
GCCCAAATCTCCCCACAGCGGCATGTAGAACGACGAGCTCAGAGCTTTATTACACCTCGGTTACC
ATTCCCCCAATTGTTGATCCTCTGTTAACCCCTAACGTTAGAACCTCGTCCCTATATGAGTTGGC
TACGTGAGTCGCCTCCAGCCAGATCTCGTACGCCGTGAATGCACCGTGGGCTAGGCCAGACATAT
TATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAGGGCC
ACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGTCGGA
GTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCAAC
Right flanking sequence: Indices 266881 -- 267380
GCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTGGCCCTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCC
ACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGG
CACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTT
GCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCC
TATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCT
TCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTA
TCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTC
Found at i:266993 original size:9 final size:9
Alignment explanation
Indices: 266975--267028 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
266965 CGGAGGGCCA
266975 ACTCCTCCC
1 ACTCCTCCC
*
266984 ACTCCCCCC
1 ACTCCTCCC
266993 ACTCCTCCC
1 ACTCCTCCC
*
267002 ACTCCCCCC
1 ACTCCTCCC
267011 ACTCCTCCC
1 ACTCCTCCC
267020 ACTCCTCCC
1 ACTCCTCCC
267029 TTCGGTCGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 266475 -- 266974
CGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGTTAACCCCT
AACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGC
CGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTAATTCTAGG
CCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGA
GGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTC
CTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 267029 -- 267528
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGC
CAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTG
CCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCT
ATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTT
CGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTC
Found at i:266996 original size:18 final size:18
Alignment explanation
Indices: 266975--267024 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
266965 CGGAGGGCCA
266975 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
266993 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
267011 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
267025 TCCCTTCGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 266475 -- 266974
CGAGCTCAGAGCTTTATTACACCTCGGTTACCATTCCCCCAATTGTTGATCCTCTGTTAACCCCT
AACGTTAGAACCTCGTCCCTATATGAGTTGGCTACGTGAGTCGCCTCCAGCCAGATCTCGTACGC
CGTGAATGCACCGTGGGCTAGGCCAGACATATTATACCCATACTTCGCTGCCGCGTAATTCTAGG
CCCGGGTCCGCCCCCGCAACCCAGCTAGGGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGA
GGAGGCCAACCCAACTCCTCCCTTCGGTCGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTC
CTCCGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGCGGACCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 267025 -- 267524
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAG
GGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGA
GGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGA
GTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCC
CTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATC
GGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCA
Found at i:267229 original size:82 final size:82
Alignment explanation
Indices: 267133--268507 Score: 2750
Period size: 82 Copynumber: 16.8 Consensus size: 82
267123 ACCCTATCGG
267133 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267198 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267215 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267280 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267297 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267362 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267379 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267444 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267461 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267526 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267543 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267608 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267625 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267690 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267707 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267772 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267789 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267854 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267871 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
267936 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
267953 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268018 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268035 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268100 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268117 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268182 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268199 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268264 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268281 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268346 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268363 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
268428 CTCCTCCCTATCGGAAT
66 CTCCTCCCTATCGGAAT
268445 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
1 TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACC
268508 CTTGGGGGCC
Statistics
Matches: 1293, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 1293 1.00
ACGTcount: A:0.16, C:0.35, G:0.23, T:0.26
Consensus pattern (82 bp):
TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAA
CTCCTCCCTATCGGAAT
Left flanking sequence: Indices 266633 -- 267132
ATATTATACCCATACTTCGCTGCCGCGTAATTCTAGGCCCGGGTCCGCCCCCGCAACCCAGCTAG
GGCCACCCAGAGGATTCATGGAGGGGGCCAGCCAGGAGGAGGCCAACCCAACTCCTCCCTTCGGT
CGGAGTTGGCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCCGGACCAACTCCTCCCTATCGGTCG
GAGTTGTCCTCCTATCGGAGGACCAACTCCTCCCTATCGGTCGGAGTTGTCCTGCGGACCAACTC
CTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCC
CTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGG
Right flanking sequence: Indices 268508 -- 269007
CTTGGGGGCCCCTGGCCTTCCATTGGGTTGGGTTCGGTCGGTTCTGCTTCCCCCTCGATTTGGGG
TTGGCCCGGCGCTCCTTTCATTGGGTTGGCCAACAAACAGTGCTGCAGGCTTTTAAAAGAGCCAA
TCTCTCTTCCAAAAGAAACTCGATTCGAAGTCTTGAAGTAGTCTCCCGGGCCGTTCATTGAATCA
ATTCCCGTTTCTAACGAAAAGCCATCCTAGTAATATTCGTATCCCGAAGTCTTCCGTGACGTTTG
AAATCACGTATATAGATGTCTTCCGGGATTGGTTCCGTAAAATGCCCCTTCCAATGATTCACTCA
CCACAAGGTCGCTAGGTCTCTAGACTATCGTGTAGTCATCCCCGAGCCAAACATTTGGGCGAGGC
CCTACAAAAATAGTGAAGGCACTATAGTGCATCGCGTAGCGCTAGAGAGGTTATCTAAGTGGGCC
GGTACGAGGCATTTACTAGTGGAAGCGCGTAGCGCACTTAATAAG
Found at i:269114 original size:35 final size:35
Alignment explanation
Indices: 269065--269162 Score: 153
Period size: 35 Copynumber: 2.8 Consensus size: 35
269055 TAGGGCCCTC
*
269065 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
* **
269099 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
269134 CGAAGTGAGGACCACTCCGACCGATAGGG
1 CGAAGTGAGGACCACTCCGACCGATAGGG
269163 AGGAGTTGGT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 5 0.09
35 51 0.91
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.10
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCGATAGGGTCCGAA
Left flanking sequence: Indices 268565 -- 269064
ATTTGGGGTTGGCCCGGCGCTCCTTTCATTGGGTTGGCCAACAAACAGTGCTGCAGGCTTTTAAA
AGAGCCAATCTCTCTTCCAAAAGAAACTCGATTCGAAGTCTTGAAGTAGTCTCCCGGGCCGTTCA
TTGAATCAATTCCCGTTTCTAACGAAAAGCCATCCTAGTAATATTCGTATCCCGAAGTCTTCCGT
GACGTTTGAAATCACGTATATAGATGTCTTCCGGGATTGGTTCCGTAAAATGCCCCTTCCAATGA
TTCACTCACCACAAGGTCGCTAGGTCTCTAGACTATCGTGTAGTCATCCCCGAGCCAAACATTTG
GGCGAGGCCCTACAAAAATAGTGAAGGCACTATAGTGCATCGCGTAGCGCTAGAGAGGTTATCTA
AGTGGGCCGGTACGAGGCATTTACTAGTGGAAGCGCGTAGCGCACTTAATAAGTGGTGCAGGCAT
ACGACGCTCCTATTTGCCCCCCCGTAAATCACCACTAGGGCCCTC
Right flanking sequence: Indices 269163 -- 269662
AGGAGTTGGTCCGAAGGACCACTCCGAATTCCGATAGGGAGGAGTTGGCCTCCGGATCGGCTAAT
TGTTAAATGATACTAGATGGCCGCAGCTCACAACGTGAAATCGGTGAACACAACAGAGCTACAGC
CGCCCTAGGTTCAAATCCGATGATAGGGTAGCATACTCGCTTGGTGGAATTGGGCACGACAGACT
CAACAAAATCTGCATTGTGCGGTCGGTTCAGATCCGATAGCGGGTATGGACGTGTATAGATCTAC
AAGAGGTCTTTCTAGAAGGTTTAAAATACATGACTTTAACGCCTTGAAAGTGGGCCTTTAGGGCG
AGTATAACTTAATAGGTTAGAGTGTCGGATTGTGAATTCGAAAACACGGGTTCGAATCCCGTTAT
TCGCCTTAGCGCGCGCATTTTACCTCATCATCCATGTACGCGTCGAATGACCACTCCCTGTGGCG
CTGCTATCCCTCTTCCTTATGGCGCCTGGATCCGCTTATGGTGTG
Found at i:270500 original size:35 final size:35
Alignment explanation
Indices: 270454--270522 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
270444 CCGGCCGCTG
270454 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
270489 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
270523 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 269954 -- 270453
TTAATTGAAAATTAAAGTACTCGATTAATTGAAATTAATTGAACCCGACGCTTTCGATTTCCCGC
ATCGTGACTGGGCTTAAGAAAGGGAAGGACCTCAAAGTCTGTAGCCAACTCCCCCCACTCCTCCC
GGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCGGTGGGTCGGAGTTGGCAGGGTGCCACAAA
AGGTTAGCCTGGCAGGCTAGGCTTGCCTGGCCCGGCACTTCAAAGGGGAGATCCGGGTCTACCCT
GCATTCCTTGCCGGGGTTTCCTCCAACTCCTCCCTATCGGTCGGAGTTGCCCTGTGCCTGGCAGG
GTTCGGCCCCCGGGGGTTTAAAGTAGCGCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCGC
TATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGGTCCCCCAACTCCTC
CCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTG
Right flanking sequence: Indices 270523 -- 271022
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTT
CGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGG
ACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCCACTCCC
CCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTC
GGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACA
Found at i:270736 original size:64 final size:64
Alignment explanation
Indices: 270635--270777 Score: 277
Period size: 64 Copynumber: 2.2 Consensus size: 64
270625 TCCTCCCTTC
*
270635 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
270699 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
270763 GGTCGGAGTTGTCCT
1 GGTCGGAGTTGTCCT
270778 ATCGGACCCA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 78 1.00
ACGTcount: A:0.15, C:0.27, G:0.33, T:0.25
Consensus pattern (64 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 270135 -- 270634
CAGGGTGCCACAAAAGGTTAGCCTGGCAGGCTAGGCTTGCCTGGCCCGGCACTTCAAAGGGGAGA
TCCGGGTCTACCCTGCATTCCTTGCCGGGGTTTCCTCCAACTCCTCCCTATCGGTCGGAGTTGCC
CTGTGCCTGGCAGGGTTCGGCCCCCGGGGGTTTAAAGTAGCGCCCCCCACTCCTCCCGGTAGGTC
GGAGTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGG
TCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTA
CTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGA
TTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCG
CGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTC
Right flanking sequence: Indices 270778 -- 271277
ATCGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCTCCCA
CTCCCCCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGT
CCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACACAGGTACACCGGCTC
TACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTATGGGGACCTAGGTCTAGATACG
TGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCTATAGGCGATGAGGTCGCGTCC
GCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCAACGTATTCTCTCTCCCGGAAA
GACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAGC
Found at i:270851 original size:9 final size:9
Alignment explanation
Indices: 270833--270886 Score: 83
Period size: 9 Copynumber: 6.0 Consensus size: 9
270823 CGGAGGACCA
270833 ACTCCTCCC
1 ACTCCTCCC
*
270842 ACTCCCCCC
1 ACTCCTCCC
270851 ACTCC-CCC
1 ACTCCTCCC
270859 AACTCCTCCC
1 -ACTCCTCCC
270869 ACTCCTCCC
1 ACTCCTCCC
270878 ACTCCTCCC
1 ACTCCTCCC
270887 GGTAGGTCGG
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
8 3 0.07
9 36 0.86
10 3 0.07
ACGTcount: A:0.13, C:0.69, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 270333 -- 270832
GTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGGTCC
CCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTACTT
TAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGATTA
ACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCGCGA
CGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
CGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGACCCA
CTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCA
Right flanking sequence: Indices 270887 -- 271386
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTA
GGTACACAGGTACACCGGCTCTACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTAT
GGGGACCTAGGTCTAGATACGTGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCT
ATAGGCGATGAGGTCGCGTCCGCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCA
ACGTATTCTCTCTCCCGGAAAGACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAG
CGGTAGAATACATGACTTTAAAGTAACGATCCACGCACAATGGTGGGCCAGGAAAACGCGCATAG
CGAGCTGGCCTACTGATCGAAAGTTCTATCTGAGGGGGGAAGCGC
Found at i:270860 original size:27 final size:27
Alignment explanation
Indices: 270830--270882 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
270820 TGTCGGAGGA
270830 CCAACTCCTCCCACTCCCCCCACTCCC
1 CCAACTCCTCCCACTCCCCCCACTCCC
*
270857 CCAACTCCTCCCACTCCTCCCACTCC
1 CCAACTCCTCCCACTCCCCCCACTCC
270883 TCCCGGTAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.15, C:0.68, G:0.00, T:0.17
Consensus pattern (27 bp):
CCAACTCCTCCCACTCCCCCCACTCCC
Left flanking sequence: Indices 270330 -- 270829
GGAGTTGTCCTCGCTATGCTCGGACCCTGGCAACTCCTCTTTAAAGGCGGAATAAATATTTGTGG
TCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGCCGCTGAGGTTA
CTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATTAATGA
TTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGAGCTGGTTTTCG
CGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGAC
CCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGA
Right flanking sequence: Indices 270883 -- 271382
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATT
CCTAGGTACACAGGTACACCGGCTCTACTTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCT
CTATGGGGACCTAGGTCTAGATACGTGTACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAG
GGCTATAGGCGATGAGGTCGCGTCCGCTTTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCA
TCCAACGTATTCTCTCTCCCGGAAAGACCCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAG
CGAGCGGTAGAATACATGACTTTAAAGTAACGATCCACGCACAATGGTGGGCCAGGAAAACGCGC
ATAGCGAGCTGGCCTACTGATCGAAAGTTCTATCTGAGGGGGGAA
Found at i:270923 original size:35 final size:35
Alignment explanation
Indices: 270884--270975 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
270874 TCCCACTCCT
270884 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
270919 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
270954 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
270976 TCGGACCCTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 270384 -- 270883
AATATTTGTGGTCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCGGC
CGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTG
AAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGAATTCTAAAAAGGGA
GCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTG
TCCTATCGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCT
CCCACTCCCCCCACTCCCCCAACTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 270976 -- 271475
TCGGACCCTGACCCAGGCGGTTTTCCTAACCTCCATTCCTAGGTACACAGGTACACCGGCTCTAC
TTATTCTTCAACCTGGTCAAACCTGGTAAACCTATCTCTATGGGGACCTAGGTCTAGATACGTGT
ACAGATCCCCAGGTATAGGTACGGTACGACCCGGGAGGGCTATAGGCGATGAGGTCGCGTCCGCT
TTTCAGAGGTGCCTACGTGGCTGTACCGATGCTCCCATCCAACGTATTCTCTCTCCCGGAAAGAC
CCGTAGATTCATTCGACAGGGGGCGCGCTGCGCATAGCGAGCGGTAGAATACATGACTTTAAAGT
AACGATCCACGCACAATGGTGGGCCAGGAAAACGCGCATAGCGAGCTGGCCTACTGATCGAAAGT
TCTATCTGAGGGGGGAAGCGCTCCGAAGGAGCGGGAGAGTGCGAAGCACTCGATACCTCCTACAG
ACCACTCTCCCATTGCGAGGGTGAAACGCGAACTTTTCCCTTCGA
Found at i:272272 original size:35 final size:35
Alignment explanation
Indices: 272226--272310 Score: 170
Period size: 35 Copynumber: 2.4 Consensus size: 35
272216 TCCTCCCTTC
272226 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
272261 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
272296 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
272311 ACGGACCCTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.11, C:0.27, G:0.36, T:0.26
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 271726 -- 272225
TCACAGCACCAAGCTCGAAGAGTGGCACCTTCGCCTAGCCTGAAGGGGTATGGTAAATCCATGCT
TCTGTATGGTCAATCCGGTTTCCACGCTTCTGTATGGTCAATCCAGTGGTATGGTGAATCCAAGC
CCTTTAAAGTGGTTTCGGGGTAAATCCATTCCGGTGGAGCATTAGTAAATCCACCTTAGCCGGCG
CAGTATGTAGTAATTCAATCTGGTAATCCGCCTATCGAAGATATTAAATCTACACGAGTAGGTGG
TTCGTCCCCTCTACCTGGCAAGGGTAAACCTCCACCGTAGGCACTGTGGCCAATTAATTGAAAAT
ATTTTGCCCCGAACGACTTTAAAGTAGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAAC
GCTTTATTTATTGAAAAGGAGGAGTTGAAAATTCATTGAATTTCATTGAATTTAATGCGCGCGAA
TTCGAATGGATTCTGTTAACTCCAACTCCCCCAACTCCTCCCTTC
Right flanking sequence: Indices 272311 -- 272810
ACGGACCCTAGGTGTGTGCCTTCCCCAGTGGTTGGAAGTACCCAAACCAGTGAGTGGGTGACCCG
AACCCGAAGTAGTGGGTGCAGGGGGCCGCTTTAAAGGGCCCCCTGTGCCCTACCTTACAGTGAAG
AAGCCCTTCCACCTTGGCTTGGGTGACTGCCCTTTCAAGCTAAACCTTCTGCCCGGCCCAGTACG
CTTTCCTTTTTATCGGCCCCCGTCGCCACTTGGCCCTCCCGCCGGCAGGCGGTCCCTTTCGCGCC
TCCTCAACCTCTGAATCAACTGGCCGGGTAGCCAACAGATTCAACCCATGGTATGATTGGGTGTA
ACCCAGACAATTGGGTGGATTTGGCTCTATCGTCTCATTTTTTATCCATACGATTGGATTGGGTG
GTCCCGGCTGATTGGGTGCCCAATATTGGGATTCAAATGCCGGGGCTCAGGATTGGTTGTTTTGC
CCCCACAGAATTGGGCAAGTTCCCCTCCATTCAAGAAGGTTTTTG
Found at i:273248 original size:23 final size:23
Alignment explanation
Indices: 273218--273264 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
273208 AGTTTAAAGT
273218 CCTTCCTAAAGTCATGTATTTTA
1 CCTTCCTAAAGTCATGTATTTTA
273241 CCTTCCTAAAGTCATGTATTTTA
1 CCTTCCTAAAGTCATGTATTTTA
273264 C
1 C
273265 TTTCAACTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.43
Consensus pattern (23 bp):
CCTTCCTAAAGTCATGTATTTTA
Left flanking sequence: Indices 272718 -- 273217
GCCCAATATTGGGATTCAAATGCCGGGGCTCAGGATTGGTTGTTTTGCCCCCACAGAATTGGGCA
AGTTCCCCTCCATTCAAGAAGGTTTTTGCACCCATAATTCCACCCACAGCAGGTTCGCACCCTCT
TGAATGGGAGGGAACCCGCTGTGGGAGGAACTAGAGGCTGCGCTTCAGTTTTTACTAAGACGAAT
TTGAGGCCTCTACGTTAATGTTTGGCCAAACAACTTCTTCCTTTTAAAAGGCCGGTATAAGTTAC
TTTAATCTTAAATTAAATTAAATTAAAGTAACCCATTAATTTCAATGAATTTAATTAATTTAATT
CTTCATCAATTCGAACTTTTAAAGGGACGAAATGAATTTCATTGAATTTTTCATTCTTCGAAATT
AATTGAATTTGACTTCACTTCCTTCCTTCTAGAAATGCTTCATTAATTGAATTTAATTTAACTTG
AAGCTCCTTGAAGTTAAATTAAATTCAATTAATGAAGTTTAAAGT
Right flanking sequence: Indices 273265 -- 273764
TTTCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGCCCTCCTATCGGAGGGCCCTAAAGCGTTTGAGAATTTCAATGAATTTCATTGAATTTA
GCTTCATGGCCATTTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTT
TCGAAATGACTGGTGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATAC
GTGTCTCGAGTTCGAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGC
GTTTTTCTTGTACGTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCG
AAAGAGGCACAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAG
GGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCC
Found at i:273634 original size:19 final size:18
Alignment explanation
Indices: 273610--273646 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
273600 TACGTTGTCC
273610 GTGTTTCTCGTACGTTCGA
1 GTGTTTCTCGTAC-TTCGA
273629 GTGTTTCTCGTACTTCGA
1 GTGTTTCTCGTACTTCGA
273647 ACCGGTCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.43
Consensus pattern (18 bp):
GTGTTTCTCGTACTTCGA
Left flanking sequence: Indices 273110 -- 273609
TTGAATTTGACTTCACTTCCTTCCTTCTAGAAATGCTTCATTAATTGAATTTAATTTAACTTGAA
GCTCCTTGAAGTTAAATTAAATTCAATTAATGAAGTTTAAAGTCCTTCCTAAAGTCATGTATTTT
ACCTTCCTAAAGTCATGTATTTTACTTTCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAAAGCGTTTGAGA
ATTTCAATGAATTTCATTGAATTTAGCTTCATGGCCATTTTTGAGGAAAGAAAGGGCGCTTCGCC
GCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGGTGGTGGCTCAGGCCTCTGATCGACGAT
GGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTCGAATACGGGTTTCTCGTACGCCGGAAG
AATCGGATATTGATTCTATATACGCGTTTTTCTTGTACGTTGTCC
Right flanking sequence: Indices 273647 -- 274146
ACCGGTCGAAAGAGGCACAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAA
TTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGAT
AGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTT
ACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGA
GCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCC
Found at i:273823 original size:35 final size:35
Alignment explanation
Indices: 273779--273906 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
273769 CCTCCGATAG
* * **
273779 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
273814 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
273849 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
273884 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
273907 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 273279 -- 273778
ACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCT
ATCGGAGGGCCCTAAAGCGTTTGAGAATTTCAATGAATTTCATTGAATTTAGCTTCATGGCCATT
TTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGGT
GGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTCG
AATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTTGTACG
TTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCACAGTA
GTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 273907 -- 274406
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTT
ACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGA
GCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCCTGCTCCTCTAG
AAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCAAATATCGTAGT
CCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAAACACTTTTAAA
GGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGG
CAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGAC
Found at i:273916 original size:9 final size:9
Alignment explanation
Indices: 273904--273960 Score: 96
Period size: 9 Copynumber: 6.3 Consensus size: 9
273894 CCGACCTACC
273904 GGGAGGAGT
1 GGGAGGAGT
273913 GGGAGGAGT
1 GGGAGGAGT
*
273922 GGGGGGAGT
1 GGGAGGAGT
273931 GGGAGGAGT
1 GGGAGGAGT
*
273940 GGGGGGAGT
1 GGGAGGAGT
273949 GGGAGGAGT
1 GGGAGGAGT
273958 GGG
1 GGG
273961 CTCTCTTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.18, C:0.00, G:0.72, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 273404 -- 273903
CCATTTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGA
CTGGTGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGA
GTTCGAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTT
GTACGTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCA
CAGTAGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGG
GCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 273961 -- 274460
CTCTCTTTCTTACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTT
CTAGGGTCCGAGCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGG
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCC
TGCTCCTCTAGAAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCA
AATATCGTAGTCCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAA
ACACTTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGA
Found at i:273931 original size:18 final size:18
Alignment explanation
Indices: 273908--273960 Score: 106
Period size: 18 Copynumber: 2.9 Consensus size: 18
273898 CCTACCGGGA
273908 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
273926 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
273944 GGAGTGGGAGGAGTGGG
1 GGAGTGGGAGGAGTGGG
273961 CTCTCTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.17, C:0.00, G:0.72, T:0.11
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 273408 -- 273907
TTTTGAGGAAAGAAAGGGCGCTTCGCCGCTTCTAGTTAAGGAAGGACTCGTTTCGAAATGACTGG
TGGTGGCTCAGGCCTCTGATCGACGATGGACATTACTCAAGCTTCTATATACGTGTCTCGAGTTC
GAATACGGGTTTCTCGTACGCCGGAAGAATCGGATATTGATTCTATATACGCGTTTTTCTTGTAC
GTTGTCCGTGTTTCTCGTACGTTCGAGTGTTTCTCGTACTTCGAACCGGTCGAAAGAGGCACAGT
AGTGCCGTAGGCGTAGGACAGAGCAGCGCTCTTAGTACTAAGAATTTTAAAGGGCAGGGGGGCGC
TACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 273961 -- 274460
CTCTCTTTCTTACTTTTAACGAACCTTTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTT
CTAGGGTCCGAGCGACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGG
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCC
TGCTCCTCTAGAAGTGAAGCGGGCAGTTCCATATCATAATCCGCTAGATCATCAACCAGCATGCA
AATATCGTAGTCCCCTCGCCACCTTGCCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAA
ACACTTTTAAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTC
CGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGA
Found at i:274419 original size:34 final size:34
Alignment explanation
Indices: 274357--274447 Score: 155
Period size: 34 Copynumber: 2.6 Consensus size: 34
274347 CCTCCGATAG
*
274357 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGA-AGGGTCCGAACGAAGT
*
274392 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
274426 GAGGACAACTCCGACCGAAGGG
1 GAGGACAACTCCGACCGAAGGG
274448 AGGAGTTGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 37 0.70
35 16 0.30
ACGTcount: A:0.30, C:0.27, G:0.34, T:0.09
Consensus pattern (34 bp):
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 273857 -- 274356
CTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGCTCTCTTTCTTACTTTTAACGAACCT
TTAAAAGTCAACTTTTAAAGGGCTTTCTCACGAACTTTTCTAGGGTCCGAGCGACGCGCCTTAAA
TTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGGGTGGGGGGAGTTGGACCCTTTAAAGCCTGCTCCTCTAGAAGTGAAGCGGGCAG
TTCCATATCATAATCCGCTAGATCATCAACCAGCATGCAAATATCGTAGTCCCCTCGCCACCTTG
CCGGAATTTCGCCGGCATACACGGAATATACTTGGAAAAACACTTTTAAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCAAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 274448 -- 274947
AGGAGTTGGAGGAGTTGGTCCGAAGGACAACTCCGACCGCGGGGAGGAGGGCCGCTTTAATTTTC
AATGAAATTAAATTAAAGTAACTTTACGCTGATAAAATTAGTTCTATCAACAAAGTTGTTTCCCA
GAATTAGCACGTTTCCGTATGGTGCCAGTACAACTCAATCCTCTATACATCATGCGTAGAGCATG
CATAAGCCAATAGGATTCTTCACTCCCCCTTTCGAGCACTGAGCGGCTGAACCCAACCCAATGAC
CGGTGGTCCGCACCAGACTTGTCATCAGGGGAGACCCGATGGTGGTGATGCGCAGCCTTCCTAGT
ATCAATTTGCATAGCCTAGCAAGCAGGCTATTTGGTATACGTTGCATGCATGGCCAGCCGCTAGT
TGCTACGGATGCACCGATAGCTACCCGCTGGCCTAACCGATAGCTACCCTAATACTAGTTGTTGT
TTCGTATTGGCTTTCCGGGGGAAGCGCTTACGCATCCGTATGGAT
Found at i:275022 original size:46 final size:45
Alignment explanation
Indices: 274963--275062 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 45
274953 CGGATGGCTT
* *
274963 TGGTGCGCTAACGCCGTAGCATCCAT-ATGGATGCTATGGTTGGCGA
1 TGGTGTGCTAACGCCGTAGCAT--ATGATGGAGGCTATGGTTGGCGA
*
275009 TGGTGTGCTAACGCCGTAGCATATGGATGGAGGCTATGGTTGGCGG
1 TGGTGTGCTAACGCCGTAGCATAT-GATGGAGGCTATGGTTGGCGA
275055 TGGTGTGC
1 TGGTGTGC
275063 GATAGCAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
44 2 0.04
46 47 0.96
ACGTcount: A:0.17, C:0.18, G:0.38, T:0.27
Consensus pattern (45 bp):
TGGTGTGCTAACGCCGTAGCATATGATGGAGGCTATGGTTGGCGA
Left flanking sequence: Indices 274463 -- 274962
TGGTCCGAAGGACAACTCCGACCGCGGGGAGGAGGGCCGCTTTAATTTTCAATGAAATTAAATTA
AAGTAACTTTACGCTGATAAAATTAGTTCTATCAACAAAGTTGTTTCCCAGAATTAGCACGTTTC
CGTATGGTGCCAGTACAACTCAATCCTCTATACATCATGCGTAGAGCATGCATAAGCCAATAGGA
TTCTTCACTCCCCCTTTCGAGCACTGAGCGGCTGAACCCAACCCAATGACCGGTGGTCCGCACCA
GACTTGTCATCAGGGGAGACCCGATGGTGGTGATGCGCAGCCTTCCTAGTATCAATTTGCATAGC
CTAGCAAGCAGGCTATTTGGTATACGTTGCATGCATGGCCAGCCGCTAGTTGCTACGGATGCACC
GATAGCTACCCGCTGGCCTAACCGATAGCTACCCTAATACTAGTTGTTGTTTCGTATTGGCTTTC
CGGGGGAAGCGCTTACGCATCCGTATGGATTGGCTCGGATGGCTT
Right flanking sequence: Indices 275063 -- 275562
GATAGCAGCCTAAGTCGAAGCAGTGGCGTGTTCATGCTATGCTCTAGAGGCTGCATTCGCCCGGA
TGATGGCACACGACTAGCGATGACCAACCGAGCCGTAGCCTCCATATATATGGATTGGCTATCGG
ATGGCGATGGCGCGCTAGCGCTGAAGCATCCATATGGATTGGCTCGGTTTGGGCGATGGTGTGCT
AGCGCCGGCAGCCTATGGATGGATTGGTGCTATAGCGATGGTGTGCTAGCGCCTAATACTATGTG
TGCATTGGCTTATGGCCGCCAGGTTAGCATACGACCGGCAACAGCCGGGTTTCGATACAGTAGCG
GTTGAAGCTACTGAACACCTTATAGACAGACTCTACCACTTGTTATACGTGGCATGCATGTCCAG
CCGCGAGTCGAATACCAGTGCCATTGGTTATTCGCGTCACTCACTGGCGGATTAGTTGCTAATAC
TGCATTCAACGTTGGTTTGGTGGACTGGCTATGGGCATAATAAGA
Found at i:279128 original size:64 final size:64
Alignment explanation
Indices: 279060--279224 Score: 321
Period size: 64 Copynumber: 2.6 Consensus size: 64
279050 CCTCCCGGTA
279060 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
279124 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
279188 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
279225 TCGGAGTGGT
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 96 0.96
65 4 0.04
ACGTcount: A:0.15, C:0.28, G:0.33, T:0.24
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 278560 -- 279059
CCACCACCACCTACAAAGTGGGTGGGGTTTAAAGGAGTTGGGCTTGCCTAAGCTCCCTACCCACC
ACCACCCATAAAGCGGGTGGGGTTTAAAGGAGCTTGGCGCTAGCTGAGCCGAACTAAAATGCGCT
CCCGTTCTTCCCGAAATATGCGAGTTCCAGATTTTATTGCCTACCCAGTTAGATATGTAGTCCCT
TCCGGGATTCGGTTGAGACCGCCGCATTATGGACTTAGTAGTTCCGGAATTTGCTGTCATATTTG
GATAGCCGCCCTGTTTTGCCGAGCCGGCTATTCCGATTACAAAGTCGTCCGCGTGGACCCCTTGC
TGGGGCCAGGGTAGCGCGTAGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTACCCCAGCG
ACGTGGCTAAAGCCAACTCCTCCCTTCGGTCGGAGTGGTCCTATCGGACCAACTCCTCCCTATCG
GAATTCGGAGTTTCGGAGGACCAACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 279225 -- 279724
TCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTA
CAGGAGTAGGAGAAAACGCGCGCGGAGCAGCTTCGGGGCCCCCCCCCACAATAAGGGGTGGGGGG
CGAAGAGAGAAAACGCGCTGTTTTCGGTAATTTAATTGAATTGAATTGAATTGAATTTAGCTTCC
CGCCTCCGGTTCACCGAGGGGTCCATTGGGTCTTGGGAAGGCAAGCTTCTCACAGTCTTCGGGTG
CAGAGCGCCCTTTGATACAATCTGGGGGGGCTCTATTAACCAGGGGGGTTAAAACACGGTTGGAG
CGGGTTTGATAATCATCCCCCATGTACTTGTCCAGAACCCTTTTGATAGAAAGGGCGGGTACACA
GTTACAGTCTCGAGGGGAGTTTTGAAAACTTGGCCTTTAAAGGCTACTTTTAGCAAATTAATTGA
AAATTAATTGACGCTTGGGGAGTGCCTACCTTCGATAGTTTATTG
Found at i:281066 original size:34 final size:34
Alignment explanation
Indices: 281005--281122 Score: 227
Period size: 34 Copynumber: 3.4 Consensus size: 34
280995 AAAAGTCCGA
281005 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
281040 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
281074 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
281108 AGGACCACTCCGACC
1 AGGACCACTCCGACC
281123 CTCTCCCTAT
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
34 66 0.80
35 17 0.20
ACGTcount: A:0.29, C:0.31, G:0.31, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 280505 -- 281004
ACAAAGGGCTTCAGCCCTTGCCGTCCCCATCACCACCTACAAAGTGGGTGGTGGGGACGGCAAGG
GGTGGGGGGCCTCCGGCCCCCCCCGGGCCCTTCCGGGCCAGCCTCGGCCGGCAGGCCCTTTAGTA
GCCCCCACCACCATCTCTGAAGTGTTAATTTAATTGAAAATTAAGTTACTTTACGGCCCGCAGCA
AGAGAACTTTAAAGTAGCGTTTTCGCAATCAAACGCACGGCGCGCTGTATAGAGTTTTGCCCTTG
CGAAAACTAGCTGCTTCGGGTTCAGCGCGCTGAACCCTTTTAAAAGTAGCGTTTGATTGCTAAGC
GCTGTTTTGGCTAGCGCGAAGGCCGGCCTTGCGAAGAAAACTAGCTTCTTGCCCAGCACTAATGT
GCCCCCAGGGCAAATATGAATGCCCGGAGCTTTAAAATTAATTGAATTTAAGAGTTTGGAACTAA
CTGTCCCGAGAAAACTAAAGCGTTTCAGGGCTTTTAAAAGTCCGA
Right flanking sequence: Indices 281123 -- 281622
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGCCAACTCCGGCCGATAGGGAGGAGTTGGTCCGACCGCTTTAA
AAGGGGTCCGAGGCACTTAAAGGGAGAAATGGAGAAATTTCAAGGAAATTAAATTAAAGTAACGC
CGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGA
GGCGAGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTA
TCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGGGACCACAAATAATTCCTA
GGGAGGACTTTTAAAGGCACTTAAGGTAATTTTCTTGACTTAAGAGGTCGCCGGGCGTTTTTCCA
GTTAATGGCCCAACAGGGAAGGGCCAAAATATGGGCGTTTTGGGG
Found at i:282656 original size:43 final size:43
Alignment explanation
Indices: 282546--282667 Score: 169
Period size: 43 Copynumber: 2.8 Consensus size: 43
282536 CTAACCACAG
282546 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
1 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
* * *
282589 GGCACTGCC---AGGTCAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGCCCT-CCGATAGG--AGGGCCACTCCGACCGATAGGGAGGAGTT
282632 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGG
1 GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGG
282668 TCCGAACGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
41 3 0.04
42 2 0.03
43 57 0.85
44 2 0.03
45 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.36, T:0.13
Consensus pattern (43 bp):
GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTT
Left flanking sequence: Indices 282046 -- 282545
ACTGGGACGGGAGTGTCCGGCAAGCTCGTTCTGGGGGGACTAACGCGTTTTCCACCACGATTGTG
GTTCTTCCGCTTCGCGCCCCAACTCCCTACCCACCCACTTTGTAGGTGGTGGTGGGGTTTAAAGG
AGTTGGGCTGCCGCCCCCTTGAACGCAGTACATTGGGATCCTGATGCACTACTACGAACGTTACC
GCGAACCGCCTGCGGTGAGGCCACATTAGTGCGCTACGCGCCGGTACCTGCTGGAAAGCGCGTAG
CGCTAATTCCAGAGCTAAGTGCACCCCTTGAAAGAAAAAGGTGCCAACCGCAAGTGTCGGCTTGG
TTATCCTCATTAAGCCACCTACTGTCTAGCTCCCGGACACTTATTTCCGAAGGTAGAATAAAGCG
CTTTGCGCTTTCTGCTCCACCCTCTTCTCATGCCGGCCCACCCAATGCTTTTCCACGTATCCTTC
CGCGCCGGGATACGCTACCTCGGGATGCTTTACTCCTAACCACAG
Right flanking sequence: Indices 282668 -- 283167
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCGAC
AGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGTGGCGGGAGGAGTTGGGGGAGTTGGTTCCAAGACGGAGCTTA
ACCTGGGTCTCGGTCAAGAACGGCGATCTACGTTTCACACGGCGCACGATTCCATGGATCGTTTC
ATTTGAGATCGTGATGGAGGACATGGCTTACGATCATCAGCTTTAATCATGCCACTAGGCATTTG
ATTAGGGCATTGCACAATGATTCGAAGACTTTGCCGCATCTCTTC
Found at i:282689 original size:35 final size:34
Alignment explanation
Indices: 282645--282770 Score: 207
Period size: 35 Copynumber: 3.6 Consensus size: 34
282635 CCTCCGATAG
*
282645 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
* *
282680 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
282715 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
282749 GAGGACCACTCCGACCGAAGGG
1 GAGGACCACTCCGACCGAAGGG
282771 AGGAGTTGGA
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
34 37 0.44
35 48 0.56
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.10
Consensus pattern (34 bp):
GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 282145 -- 282644
CCACTTTGTAGGTGGTGGTGGGGTTTAAAGGAGTTGGGCTGCCGCCCCCTTGAACGCAGTACATT
GGGATCCTGATGCACTACTACGAACGTTACCGCGAACCGCCTGCGGTGAGGCCACATTAGTGCGC
TACGCGCCGGTACCTGCTGGAAAGCGCGTAGCGCTAATTCCAGAGCTAAGTGCACCCCTTGAAAG
AAAAAGGTGCCAACCGCAAGTGTCGGCTTGGTTATCCTCATTAAGCCACCTACTGTCTAGCTCCC
GGACACTTATTTCCGAAGGTAGAATAAAGCGCTTTGCGCTTTCTGCTCCACCCTCTTCTCATGCC
GGCCCACCCAATGCTTTTCCACGTATCCTTCCGCGCCGGGATACGCTACCTCGGGATGCTTTACT
CCTAACCACAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAG
GTCAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAG
Right flanking sequence: Indices 282771 -- 283270
AGGAGTTGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTGGGT
CCGATAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGA
AGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGTGGCGGGAGGAGTTG
GGGGAGTTGGTTCCAAGACGGAGCTTAACCTGGGTCTCGGTCAAGAACGGCGATCTACGTTTCAC
ACGGCGCACGATTCCATGGATCGTTTCATTTGAGATCGTGATGGAGGACATGGCTTACGATCATC
AGCTTTAATCATGCCACTAGGCATTTGATTAGGGCATTGCACAATGATTCGAAGACTTTGCCGCA
TCTCTTCGATGCGAATACAATAACGATCATAGCAATCTCCTCTGGTACCTACTGGTACGTCAGAA
TCCGATTGGTCATGAACATCGTAAGGTGCTGCTTTCCGCGAATCC
Found at i:288200 original size:9 final size:9
Alignment explanation
Indices: 288186--288223 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
288176 TGGGGCCAAA
288186 CCAACTCCT
1 CCAACTCCT
288195 CCAACTCCT
1 CCAACTCCT
288204 CCAACTCCT
1 CCAACTCCT
288213 CCAACTCCT
1 CCAACTCCT
288222 CC
1 CC
288224 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 287686 -- 288185
CATTTCATTTGGGCCTCCTTCACCTTTCCCCGCAGTGGAAGCGCTACGCGCAATCGAAGGCATCT
ATCTACGTGTGTGAATGGGAAATCGAGAATCCCAAAAAACCTTTTTTCTGGAATTAGTAATGAAT
CAGATATACCAGTGACAGCTGCTACTCCGGCATAGGATTCTGAGGCAGTAGATTGATTCGGAAAG
GGAGGGTTTCATGACCCAAACTCTCTCCCGGCGGACGAGTGCTTCTCAACAAAACCGTCACTCGC
TGGGGTGGTAGTGTGGCGGGTGAAGCATGTAGAGGCTTTGGTACAAGTATCACATATGCTGCATA
GTTGCTAGGGTGCATAGGGGAAGGACACTCAACAGAGAGAGGGATCCTGAAGGTACGGAGACGCG
AGGACCTTAGTACCCAGGCCGAGGGATGATATCGTCACATAGCGGGATCCTTATGAAACCCCTTC
GATGGGGCCGCCTACCGAAACCTACCTCCTTTCGATGGGGCCAAA
Right flanking sequence: Indices 288224 -- 288723
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCG
CGTAGCGCCCCCCTGCCCTTTTGAAACCTACCTTCTTTCCTAACAGACTCCATCCTCAATGGTAA
CCGTTGACGAACCACCAGAAGAACGCTCGATAGGAAAGGGTAGTGGGAACAAAAAGACTAAAGGC
CATTCTGCTTTTAGTAAACTAACCTATCATTGGTCGTTTAGTACGAGATCGCTTCACACCTCTTT
AAAAGGGTTTTCCGCGAGTATAGTAGGGGCTTTCATCACAGCCGAAGGCTGTCTATGCAGAGTGA
ATCCGACCTTCAGGGTCGCGTAGCATAAGCTACCGATTAATAACG
Found at i:288340 original size:34 final size:35
Alignment explanation
Indices: 288292--288369 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 35
288282 ATAGGGAGAG
*
288292 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
288326 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
288361 GGTCGGAGT
1 GGTCGGAGT
288370 TGCCCTCCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 31 0.74
35 11 0.26
ACGTcount: A:0.10, C:0.29, G:0.31, T:0.29
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 287792 -- 288291
TTTTTTCTGGAATTAGTAATGAATCAGATATACCAGTGACAGCTGCTACTCCGGCATAGGATTCT
GAGGCAGTAGATTGATTCGGAAAGGGAGGGTTTCATGACCCAAACTCTCTCCCGGCGGACGAGTG
CTTCTCAACAAAACCGTCACTCGCTGGGGTGGTAGTGTGGCGGGTGAAGCATGTAGAGGCTTTGG
TACAAGTATCACATATGCTGCATAGTTGCTAGGGTGCATAGGGGAAGGACACTCAACAGAGAGAG
GGATCCTGAAGGTACGGAGACGCGAGGACCTTAGTACCCAGGCCGAGGGATGATATCGTCACATA
GCGGGATCCTTATGAAACCCCTTCGATGGGGCCGCCTACCGAAACCTACCTCCTTTCGATGGGGC
CAAACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 288370 -- 288869
TGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGC
CCTTTTGAAACCTACCTTCTTTCCTAACAGACTCCATCCTCAATGGTAACCGTTGACGAACCACC
AGAAGAACGCTCGATAGGAAAGGGTAGTGGGAACAAAAAGACTAAAGGCCATTCTGCTTTTAGTA
AACTAACCTATCATTGGTCGTTTAGTACGAGATCGCTTCACACCTCTTTAAAAGGGTTTTCCGCG
AGTATAGTAGGGGCTTTCATCACAGCCGAAGGCTGTCTATGCAGAGTGAATCCGACCTTCAGGGT
CGCGTAGCATAAGCTACCGATTAATAACGCTCCCGGAGCATTCGTTTGCTACAACCCTTCCAAAC
CCAGTACCTTCGGGAAAAGATGGCCACTAATTTTCAATTAATTTAAACGCTCTTTTAATTAATGA
AAAGTACTTTAATTTAATTTCATTGAAAATTAAAGTAACAACACT
Found at i:289395 original size:21 final size:21
Alignment explanation
Indices: 289369--289452 Score: 168
Period size: 21 Copynumber: 4.0 Consensus size: 21
289359 GTTAAATCCA
289369 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
289390 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
289411 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
289432 ATGAAATTCTTGAAAGTCCGG
1 ATGAAATTCTTGAAAGTCCGG
289453 CGTCCGGAGG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (21 bp):
ATGAAATTCTTGAAAGTCCGG
Left flanking sequence: Indices 288869 -- 289368
TTTAATCTAATTTCATTGAAAATTAAAGTATCTTGCGCTCCCGATAAGACCCGCTGCGCCTCGGC
TACCAGATCCAGATCCTGCAGCCTGGCGTTAGCCCAGATCCAGTAGCCGCCCCATGTACATGTTG
TATGCAAGCGGGTGTAGAGATCGCCTTAGCCTACCTTAACGAATTGTCCGGTTAGTTGGGTTCCG
GGTTCCGTGGGTCATTGGGACAACCCCGCAAAACGCCGGGAAATGGATAGAATTCAGGGCTATTT
CTGGAGCATTCTCCGACCCTTCCCTTCTGCTCGAAGCTTCGCGGAAAAAAAGCCAAAACAATTCT
ATTTACTGAAATCCCAGTAGTAACGGAACTGAAAGTGATTCTGTGTAGTGTTAGGGAATTCTTTC
CCTTTAAAGCGCGGCATTTTCCAATGGATTCCGGAATCCAATGGATTATTTCGGTATTGGAACTT
CGAAGTCCTAAAGTGAGACACTTTAAAGTTGAACGGTTAAATCCA
Right flanking sequence: Indices 289453 -- 289952
CGTCCGGAGGGGATTCTTTAATTTAATTTAATTGAAAATTAAAGTAAACTCAGGCTGGAAGGTTT
TTTCGCGGCACCTGCCCGATAAGGTGGAGCGCCCCTTCCTGGCCCGGCCTTTTAAAAGGCCTTTT
AAATGCTTGCCTTTTAAGGGTGTGGTGCCCACCTAGCAGTTGGGTGTACGGATGTGGGTGTGAAG
CGCTTCATCCTTTACGGGGTGCTCGGGCGCGTGCGCTACGCGCTGTCAACGGTGGTGGGTGGCCA
TAGGCCCAGGGCAAGCGCTTGTCGTGGGTGGCTATAGCCCCTTAAAAGGCAAGCGGCTTATTGTG
GGTGGCCATAGCCCCAAGAACCAGCCTCGCACGAGTTTTGAGTGGGGTGCCAGACTTGGGCTAGC
CTAGTCAATGAGGGGGCCTTGAAGGCCTTTCTGGGGAGAAATGGGAGGGAAAGGTAATGGGAGGG
AAGGGAAACACTTTGAAAGTTTCACTTTGAAGCTCTTTAAAGCCA
Found at i:292002 original size:69 final size:70
Alignment explanation
Indices: 291915--292048 Score: 261
Period size: 69 Copynumber: 1.9 Consensus size: 70
291905 CAAGAAAAAG
291915 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
1 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
291980 CTTCC
66 CTTCC
291985 TCCGTTTTTGGGT-CTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
1 TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
292049 AATATAACCT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
69 51 0.80
70 13 0.20
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (70 bp):
TCCGTTTTTGGGTGCTTCCTTAGGGAAAACCCAAGAGTGTCGAAAAAACCCGGAAAACCATTGAA
CTTCC
Left flanking sequence: Indices 291415 -- 291914
AACTACGTAGGGCGGGGGCCGAAGAGATGTGGTGGCGCCACCTAGGCTCTCGAAAGAAAACGAAG
GCAACTCAATTGAAAGTAGTTTTACTTTAATTTTCAATTAAAGTAAAAAGTCTTTGTAACTTTAG
CCTTCGAACTTTAGCGCTTTCGAAAGCAAAAACAACTCAATATCATCCACCGCACCCTTAAAAAA
AGCACCTTCGAAGGGAAAGCGCTTCCCCCCAACTATACTACCCCCTACCCCACTGGTAGGTCGAA
CAGGGGACTAACACGCCTAAATCGAAGCCGAATTGCCGCAGAAGAAAGTTGTTTTGGAATCCTTA
CCCTCTCCCTCCCTTCGGTCGGGTAAGTGGCGTAGCCCGACTACTGATTGGGTAAGAAAGGCAGA
TTTACTTACCTTTAAAGGGAAGAACCGTGAATACTTTAATTTAATTTCATTGAAAATTAAAGTAT
CTTCCGCCTAAAGTGTCAAAAAATCCCGGGAAACTCAAGAAAAAG
Right flanking sequence: Indices 292049 -- 292548
AATATAACCTTGAATTTTCAATTCGGATTTTCGAACAGACCACCCCTATACCTGGAAAAGGAGGA
AACGCGCCCGGCGACTTTAAAGTGGCGAGGAGCTTCTTTCGAGGCTGGCTACCGGCAGTGGCAGC
TAACCAGTAGCACTCAAGCTCTGTGGGGTAAGGGGCGATAGTTTTCGACACCCTCGACCACTCGG
AGCAAGCAGAAATTGAATTGAATTGAATTGAATTTAGAAGTAACCTTTAATTTTCAATGAAATTA
AACCGGGTAAAAATTGACTTTAATTTAGCTAGCCGGGCTGGTGAGCTAGGAGAGGTGGGGGAGGG
GGTTCCAAGAGAGAAAGAGAGGGTGAGAGAGATTGTAAGGATTTTGCTGGATCCAGTTCAGTTGT
TTCGGTTCCCTGTACCGCCGCCTGTTCGCAAAGCTGTAGAGCGGGAGTTGGGATGCCGTAGCCGG
CTCGGGTCCCGCCTGGCCGTGGCGGCTAAGCAGGGCATAACCGGT
Found at i:293228 original size:35 final size:35
Alignment explanation
Indices: 293184--293311 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
293174 CCTCCGATAG
* * **
293184 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
293219 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
293254 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
293289 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
293312 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.25, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 292684 -- 293183
TTCTTATACTTTAATTTTCAATTAAAGTAAATTAAAGGCGCATTCAAAGTACTTTAATTTTCAAT
GAAATGAAATTAAAGGCCGATTTCTTTCGCTGCCAAGGAATAAGAGAAGGCCCTACTAGACCACC
GGCCGACCGTAGGTCCTGGGGCGGTAGCGTTTCGAACTAGATCTTCTTATTCCGAAGCAGTGAAG
CGAATTCAAAGAACCTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTTAGTTTTCACCTCTTA
CTAATTCTGGAGTTAGGTAGAATGGAAGGCCACTTGCACGTGTGGGAACAGGGGGAGGGCCCGTT
AATACGCTGCTGCTGCTGTTATTGACCCTAGCACGGCTATTGACCTATTTGCCGCTTAAACGGTT
GGACGATACAGAGGTATCTTTCTTTCTTTACAGCGGATACTGAGGTTGAAGGGCAGGGGGGCGCT
ACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAG
Right flanking sequence: Indices 293312 -- 293811
AGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTT
GGCCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCTTCTAAATGCAGAGAGAAATGAAT
CCATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGCCTCCGCATCCAGGAGTGGGTATC
AGACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGATTCACGTAGGTAGTGCCGGCAGC
AGGTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGCCAGGTCTTACGGAACCGGGTAGG
CTTCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTACGAT
Found at i:293356 original size:9 final size:9
Alignment explanation
Indices: 293309--293353 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
293299 CCGACCTACC
293309 GGGAGGAGT
1 GGGAGGAGT
293318 GGGAGGAGT
1 GGGAGGAGT
293327 GGGAGGAGT
1 GGGAGGAGT
*
293336 GGGGGGAGT
1 GGGAGGAGT
*
293345 TGGAGGAGT
1 GGGAGGAGT
293354 TGGTCCGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.67, T:0.13
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 292809 -- 293308
CCACCGGCCGACCGTAGGTCCTGGGGCGGTAGCGTTTCGAACTAGATCTTCTTATTCCGAAGCAG
TGAAGCGAATTCAAAGAACCTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTTAGTTTTCACC
TCTTACTAATTCTGGAGTTAGGTAGAATGGAAGGCCACTTGCACGTGTGGGAACAGGGGGAGGGC
CCGTTAATACGCTGCTGCTGCTGTTATTGACCCTAGCACGGCTATTGACCTATTTGCCGCTTAAA
CGGTTGGACGATACAGAGGTATCTTTCTTTCTTTACAGCGGATACTGAGGTTGAAGGGCAGGGGG
GCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 293354 -- 293853
TGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAG
GAGTTGGAGGAGTTGGAGGAGTTGGCCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCT
TCTAAATGCAGAGAGAAATGAATCCATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGC
CTCCGCATCCAGGAGTGGGTATCAGACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGA
TTCACGTAGGTAGTGCCGGCAGCAGGTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGC
CAGGTCTTACGGAACCGGGTAGGCTTCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTAC
GATGGATCCGGTTCACCGCTTTAAAGTCTTTGCCGGATTTCAAGA
Found at i:293492 original size:9 final size:9
Alignment explanation
Indices: 293480--293508 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
293470 CCGACCGAAG
293480 GGAGGAGTT
1 GGAGGAGTT
293489 GGAGGAGTT
1 GGAGGAGTT
293498 GGAGGAGTT
1 GGAGGAGTT
293507 GG
1 GG
293509 CCAGTTCCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 292980 -- 293479
CACGTGTGGGAACAGGGGGAGGGCCCGTTAATACGCTGCTGCTGCTGTTATTGACCCTAGCACGG
CTATTGACCTATTTGCCGCTTAAACGGTTGGACGATACAGAGGTATCTTTCTTTCTTTACAGCGG
ATACTGAGGTTGAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCC
CTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 293509 -- 294008
CCAGTTCCTGAGTCAATTGAATCAGTTATTGAATCAGCCTTCTAAATGCAGAGAGAAATGAATCC
ATCGCGACAGAGCGCCCAATTAACACCTAACTCGGGTAGCCTCCGCATCCAGGAGTGGGTATCAG
ACAGAAGGCGTTTCTTCAGTGATTCCGGTGGATCCACGGATTCACGTAGGTAGTGCCGGCAGCAG
GTCCTACGCACCGGGCATTAAAGCATGTGGTGGCGTTAGCCAGGTCTTACGGAACCGGGTAGGCT
TCTTTTTCAGAAGCATTTCCATCAAAGTCAAAAACACTACGATGGATCCGGTTCACCGCTTTAAA
GTCTTTGCCGGATTTCAAGAAATGGTCTTCTAAATCGATCCGCTGAAAATATTCTCTATGCCACC
TCAAGATCCGCTGCAATCAGTATCCGCACCTAAATATCCGCTGTAAAGCCAGCTCATGTTGAGCA
AGAAGGAATGAGATGTTGAGCTGCCGTCCTAGGCTTCAGGGACTG
Found at i:294783 original size:110 final size:112
Alignment explanation
Indices: 294650--294874 Score: 427
Period size: 110 Copynumber: 2.0 Consensus size: 112
294640 CTCCGACAGG
294650 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
1 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
294715 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTT-GGTCCGA-T
66 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGTCCGAGT
*
294760 AGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
1 AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
294825 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGTCCGAGT
66 AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGTCCGAGT
294872 AGG
1 AGG
294875 CTTCAAGGCA
Statistics
Matches: 112, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
110 101 0.90
111 7 0.06
112 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.34, T:0.16
Consensus pattern (112 bp):
AGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTG
AGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGTCCGAGT
Left flanking sequence: Indices 294150 -- 294649
ACCATTGAATTGGAGAGAGAATCGCAAATCTACTCTATCCACCTCAGTATCCGCTGTAAAGAAAG
ATACCTCAGTATCCGCTGTAAACACCTCACCGCTGTAAATCTAATATCCTCACCGCTGTAAATCT
AACTGCAAAAATAGCTTCTCAATTTTTCTTAGCACTGCGCAAGAAGAAGGGACCATCTTAGCTGC
ATTAGTTAGTGGAAGCGCATTTAATTTAAATTCAATGAAATTCCCATTCACGAACTTTAAAGGCG
TGAAATAGAAGGATGGCCACAATAATGTCGAAGGTAGGCCAAGCCAGCAAGCAAGGGCAGGGGGG
CGCTACGCGCCCCCCGCGGGGGCCGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCGAA
GGACCACTCCGAATTCCGATAGGGAGGAGTTGGTCCTCCGACAGG
Right flanking sequence: Indices 294875 -- 295374
CTTCAAGGCACATCAGTGAAGCGCTTGCGCTTCTTCTTCCCCACCCTACACATGCCGTGCCCTTC
TCTCTGCCGGGGGGCGTGTGCCGATAGGCACGGGTTCTTTGTGGGCCGGAAATTCTGTACGTGGC
CTAGATAAGCACGGGCTAGCGGCGCTCGTTGGAGGGTGGTGCTTGGGGCTAGGGGCAGCGGCAGC
CTCACCTGCTAGGTGCCTCGCGCTTTCCCTTTGAGGATAAGAGGGCGCTAGATAGGCTTAGGCTC
TGCTTGCTCACTTGGTGAAAATGGTAAACACGACAGACTTAAAATCTGTTCCATTGAAAGGGTTA
TCGGTTCAAGTCCGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTT
CCATTGAAAGGAGCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCT
TCTGATCCCGGCGCCCCCCTAAACCTTCCAAAAGGAACTCCTATT
Found at i:295597 original size:31 final size:31
Alignment explanation
Indices: 295559--295618 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
295549 AGCGGTCAGA
295559 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
1 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
295590 CCAACTCCTCCCGGTAGGTCGGAGTTGTC
1 CCAACTCCTCCCGGTAGGTCGGAGTTGTC
295619 CTCGCCTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27
Consensus pattern (31 bp):
CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
Left flanking sequence: Indices 295059 -- 295558
GCAGCGGCAGCCTCACCTGCTAGGTGCCTCGCGCTTTCCCTTTGAGGATAAGAGGGCGCTAGATA
GGCTTAGGCTCTGCTTGCTCACTTGGTGAAAATGGTAAACACGACAGACTTAAAATCTGTTCCAT
TGAAAGGGTTATCGGTTCAAGTCCGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTT
AGGCTTATGTTCCATTGAAAGGAGCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATG
TCGAAGATTCTTCTGATCCCGGCGCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGAT
TTTTCATAAGGATTAAGGCCCAACTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGA
AATTTCTCCCTTTAAGTGCCTCGGACCCCTTTTAGAGCGGTCAGA
Right flanking sequence: Indices 295619 -- 296118
CTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCAATTCAATCCAATCCAAT
TCAATTAATTTGACGGCCTTAGAAGTTACTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATTAAA
GTAACAACATTGAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATG
AAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATTCAAGTAACCAGAAAAAACTTGAAAGTTC
TGAGTTTAGTCCCATGCACGTGTCCAACACGTGATAGGGGTCTATCGTCGCCCAGAAAGCTTTTT
TCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
Found at i:295762 original size:37 final size:37
Alignment explanation
Indices: 295712--295914 Score: 303
Period size: 37 Copynumber: 5.6 Consensus size: 37
295702 TTAGAAGTTA
295712 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
295749 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
* **
295786 CTTTAATTTAATTTCATTGAAAATTAAA-G----TAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
* *
295818 C--AACATTGAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTA-ATTTAATTTCATTGAAAATGAAAGGATTTTCC
295854 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
295891 CTTTAATTTAATTTCATTGAAAAT
1 CTTTAATTTAATTTCATTGAAAAT
295915 TCAAGTAACC
Statistics
Matches: 148, Mismatches: 10, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
30 1 0.01
31 21 0.14
32 3 0.02
36 3 0.02
37 119 0.80
38 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.42
Consensus pattern (37 bp):
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
Left flanking sequence: Indices 295212 -- 295711
CGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGA
GCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGC
GCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAA
CTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCG
GACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCC
GGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCA
ATTCAATCCAATCCAATTCAATTAATTTGACGGCCTTAGAAGTTA
Right flanking sequence: Indices 295915 -- 296414
TCAAGTAACCAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGATA
GGGGTCTATCGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCC
TCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGTCA
TGCGCAGATGCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGACGT
TTTCTATCTACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCGGT
CAATGTAGGGACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTATAG
CCCCGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCA
Found at i:295865 original size:105 final size:105
Alignment explanation
Indices: 295721--295923 Score: 397
Period size: 105 Copynumber: 1.9 Consensus size: 105
295711 ACTTTAATTT
295721 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
295786 CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
66 CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
295826 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
1 AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
*
295891 CTTTAATTTAATTTCATTGAAAATTCAAGTAAC
66 CTTTAATTTAATTTCATTGAAAATTAAAGTAAC
295924 CAGAAAAAAC
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.40
Consensus pattern (105 bp):
AATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCC
CTTTAATTTAATTTCATTGAAAATTAAAGTAACAACATTG
Left flanking sequence: Indices 295221 -- 295720
GCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGAGCGCCCGAT
AGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGCGCCCCCCTA
AACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAACTCCTCCCT
AACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCC
TTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCGGACCCCTTT
TAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCCGGTAGGTCG
GAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCAATTCAATCC
AATCCAATTCAATTAATTTGACGGCCTTAGAAGTTACTTTAATTT
Right flanking sequence: Indices 295924 -- 296423
CAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGATAGGGGTCTAT
CGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTAT
CGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGTCATGCGCAGAT
GCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGACGTTTTCTATCT
ACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCGGTCAATGTAGG
GACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTATAGCCCCGTGAG
TGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCAGGTTGTTTG
Found at i:295912 original size:68 final size:68
Alignment explanation
Indices: 295712--295912 Score: 224
Period size: 68 Copynumber: 2.9 Consensus size: 68
295702 TTAGAAGTTA
295712 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAATGAAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCA-T-----TGAAA
295777 GGATTTTCC
60 GGATTTTCC
* * **** * * * ** *
295786 CTTTAATTTAATTTCATTGAAAATTAAAGTA-ACAACATTGAATTTCATTGAAAATGAAAGGATT
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATT-TCATTGAAAGGATT
295850 TTCC
65 TTCC
295854 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAA
1 CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAA
295913 ATTCAAGTAA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
68 49 0.49
69 11 0.11
73 11 0.11
74 30 0.30
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.42
Consensus pattern (68 bp):
CTTTAATTTAATTTCATTGAAAATGAAAGGATTTTCCCTTTAATTTAATTTCATTGAAAGGATTT
TCC
Left flanking sequence: Indices 295212 -- 295711
CGATAGTGAGCATTTTTAGTGCTTGGTTAAATTGGCGCGCTTAGGCTTATGTTCCATTGAAAGGA
GCGCCCGATAGCCAGCAGTAGATTAGTGTATTCCGATCAATGTCGAAGATTCTTCTGATCCCGGC
GCCCCCCTAAACCTTCCAAAAGGAACTCCTATTCGAGAGGATTTTTCATAAGGATTAAGGCCCAA
CTCCTCCCTAACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCCTTTTAAAGCGTTACTTTAATTTAATTTCAATGAAATTTCTCCCTTTAAGTGCCTCG
GACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCTTCCAACTCCTCCC
GGTAGGTCGGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGCAGGAGGACAACAAATTTGACGGCA
ATTCAATCCAATCCAATTCAATTAATTTGACGGCCTTAGAAGTTA
Right flanking sequence: Indices 295913 -- 296412
ATTCAAGTAACCAGAAAAAACTTGAAAGTTCTGAGTTTAGTCCCATGCACGTGTCCAACACGTGA
TAGGGGTCTATCGTCGCCCAGAAAGCTTTTTTCAAGGGTCCGAACGAAGTGAGGACAACTCCGAC
CCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
GAAGGGAGGAGTTGGAGGAGTTGGAAATGTGCCATCTTGCCTCAAAACCCTCTCCCGTGCACGGT
CATGCGCAGATGCGACAAACTGAATTCTAGAAAGCTAAACTGCGAGACTCGCAACAGAAAACGAC
GTTTTCTATCTACAAATTTGATTTGCGGCTCTTCTAGGAAGAGGAAGCGCGCAAACCTGGTTCCG
GTCAATGTAGGGACGAAGAAGCGCAGTTAGCCCTAAACGACTACCTGCGAAGTAGCGGAGCCTAT
AGCCCCGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGT
Found at i:296899 original size:21 final size:21
Alignment explanation
Indices: 296873--296912 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
296863 TGGCAGGGTT
296873 AAAATACATGACTTTAAAGTG
1 AAAATACATGACTTTAAAGTG
296894 AAAATACATGACTTTAAAG
1 AAAATACATGACTTTAAAG
296913 AAAGCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (21 bp):
AAAATACATGACTTTAAAGTG
Left flanking sequence: Indices 296373 -- 296872
CGTGAGTGGGCCCCCCGTGCCAACAAAAAGGGGACTAAGTCAGGTTGTTTGGTCTGGGTCCCTCC
GTGGATCCGGCAGGATTTAGTTTCCGACCAATCGGAGAAAAATTTCTAAGTAAAAACCAGATAAC
TAGTCAATGGGGGCCTTGAAGGCCTTTCGTGCTACGCACTTGAAGGCTGCAGGACACACTCCCTT
CAAGCCTTGATGCTCAGGAAAGTGCTGCCTCTGACCCTGGCATTAAGGAAGAGTATCCCATTCGT
CTAGGAGTAAGTACGGAGTCCCTTCAGAGTCCAGACACTCTGTCGCGAGTCTGGCAGCCAGTCTC
CAGTGGATACAGAGCATACTGTGTTGGCCTCGAAATGTTTTCGGAACCGAAGACACGAGAGCGCT
ACGCGCGTGGAAGAAGCGCGTAGCAATCGAAGGCATCCATCTACGAAAGGGTGTTATTGGCGCCT
ATACCAAAGCTGTGAGGCGATTGTCTCGGGACTGTTGGCAGGGTT
Right flanking sequence: Indices 296913 -- 297412
AAAGCTTTTTAAAGGGCTCAATTACTACCTAGGCTGCCGGGCTGGCATCACTCACTAGTTCGGCT
TTTTGGCTGAATAAACACTAGGGGCTGGGTGGGAAGGTCGTGGCGAGTAAGGCTTGTGCGAGAGA
AAGCTAGGGGATTTTCAATTAATTTAATCAAATTCAATTAATTTTCAATTAATTGAAAATTAATT
GAATCCTTATTGAGAAGTTCGCTGTAGAAAGAAAAATTTCTCAATTTTTCTTTCTACAGCGCGCT
GTAGAAAGAAGCCAAAAGTTGAACCGTTGAAAGAACCGGCCTAACTAAGCTTAAGCCATTGAAGT
CTCAGACCTTTAAACTAGCCGCCCTCTTGACCCTCGGGCTTAAAGCCAGGTTGGATTGGATTGAA
GGATTGGACGGGTTAAATAAGCGGTAGTGACCCGCCGTATTGCCGCATCGTTCTTTTGATCTTGG
CCTAGCCGCCTCTTGTATTGCCCTTGAGCTTGACCACCTTCTCGG
Found at i:297705 original size:15 final size:15
Alignment explanation
Indices: 297687--297737 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
297677 AAATCGCCTA
297687 AATTCATTGAAAATT
1 AATTCATTGAAAATT
* * *
297702 AATTCGTTTGAAAGTA
1 AATTC-ATTGAAAATT
*
297718 AATTAATTGAAAATT
1 AATTCATTGAAAATT
297733 AATTC
1 AATTC
297738 GGTTTATTTA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (15 bp):
AATTCATTGAAAATT
Left flanking sequence: Indices 297187 -- 297686
AAAGTTGAACCGTTGAAAGAACCGGCCTAACTAAGCTTAAGCCATTGAAGTCTCAGACCTTTAAA
CTAGCCGCCCTCTTGACCCTCGGGCTTAAAGCCAGGTTGGATTGGATTGAAGGATTGGACGGGTT
AAATAAGCGGTAGTGACCCGCCGTATTGCCGCATCGTTCTTTTGATCTTGGCCTAGCCGCCTCTT
GTATTGCCCTTGAGCTTGACCACCTTCTCGGATTCTTTAACCGGGAAGCGCCGGTAGCCCAGCAC
CTGACCCCCTCAGGCCCTTGCCTCTTGACTCAGGCCCAACCGGCGCTCATCGGTAAGGACTCCAG
TACCTGAATGAGTGGATTTTTTGCCCGGAAAGCGCTCATCAAGGACCCCAGCAGGCCCAGCCTAG
TTGCCACACTAGTACTGGACCCCTCTTGCCCTTGCCTCTTGACTCAGGCCCTTGGAAGTAGGGTT
TGGGTTGCCGGACTTGGACTGGCGACTGGCCATTCAAATCGCCTA
Right flanking sequence: Indices 297738 -- 298237
GGTTTATTTAATTTAAAATTAAAGTACCTTCTAGGTAAATTGCCGAACCCCTTCTTCTAAAGTGG
AAAGCGCGTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCGAACCGCCTAAGTGGCCTAA
AGGCCGGAGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCCTCTCCGGGCACTACTTCGC
TTTCCTACAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTGTTACGATAGGCGAGGGAAA
TCACGCGTACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGC
TTTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACG
CAAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAA
AATTAAGCTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCG
Found at i:298276 original size:40 final size:42
Alignment explanation
Indices: 298219--298317 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 42
298209 CAACTTATAA
298219 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTG-TCCTATCGG
1 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTGCTCCTATCGG
298260 A-CCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGG
1 AGCCAACTCCTCCCTCTCGGAATTCGGAGTTG--CTCCTATCGG
298303 AGGGCCAACTCCTCC
1 A--GCCAACTCCTCC
298318 AACTCCTCCC
Statistics
Matches: 52, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
40 30 0.58
41 1 0.02
43 10 0.19
46 11 0.21
ACGTcount: A:0.17, C:0.38, G:0.20, T:0.24
Consensus pattern (42 bp):
AGCCAACTCCTCCCTCTCGGAATTCGGAGTTGCTCCTATCGG
Left flanking sequence: Indices 297719 -- 298218
ATTAATTGAAAATTAATTCGGTTTATTTAATTTAAAATTAAAGTACCTTCTAGGTAAATTGCCGA
ACCCCTTCTTCTAAAGTGGAAAGCGCGTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCG
AACCGCCTAAGTGGCCTAAAGGCCGGAGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCC
TCTCCGGGCACTACTTCGCTTTCCTACAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTG
TTACGATAGGCGAGGGAAATCACGCGTACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTC
TAAGAAAATGACCATAGGCTTTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGC
TTTTAAAAGACAGAAAACGCAAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACT
TTAATTTAATTTCATTGAAAATTAAGCTGTTTTTTCAACTTATAA
Right flanking sequence: Indices 298318 -- 298817
AACTCCTCCCACTCCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGT
AGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTC
CCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCG
Found at i:298331 original size:18 final size:18
Alignment explanation
Indices: 298310--298345 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
298300 CGGAGGGCCA
*
298310 ACTCCTCCAACTCCTCCC
1 ACTCCCCCAACTCCTCCC
*
298328 ACTCCCCCCACTCCTCCC
1 ACTCCCCCAACTCCTCCC
298346 TTCGGTCGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.67, G:0.00, T:0.19
Consensus pattern (18 bp):
ACTCCCCCAACTCCTCCC
Left flanking sequence: Indices 297810 -- 298309
GTAGCGAAATAAGTGTGTTACAGGAAAGTGCGTAGCGCGAACCGCCTAAGTGGCCTAAAGGCCGG
AGGGGTAGTGGGTGGAGATTTGGTAATGGTTCGGCCCCCTCTCCGGGCACTACTTCGCTTTCCTA
CAACTCTGTAGGTCCTAGGCTACCAACTGCAGGGGCCTGTTACGATAGGCGAGGGAAATCACGCG
TACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCA
AAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGG
CTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAG
CTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
Right flanking sequence: Indices 298346 -- 298845
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCCCCCACTCCTCCCACTCCCCC
CACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAG
TGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGG
TCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGG
GGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
Found at i:298524 original size:9 final size:9
Alignment explanation
Indices: 298506--298559 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
298496 CTTCGGACCA
298506 ACTCCTCCC
1 ACTCCTCCC
*
298515 ACTCCCCCC
1 ACTCCTCCC
298524 ACTCCTCCC
1 ACTCCTCCC
*
298533 ACTCCCCCC
1 ACTCCTCCC
298542 ACTCCTCCC
1 ACTCCTCCC
298551 ACTCCTCCC
1 ACTCCTCCC
298560 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 298006 -- 298505
ACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCAA
AGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGGC
TGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAGC
TGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAAC
TCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCCTCCCACT
CCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 298560 -- 299059
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCG
GGGGGCGCGTAGCGCCCCCCTGCCCTAAGAACCTTTCATTGAATTTCATTGAAAATTAAGAATTC
TGTTGCGAAGAAGTAAAATAATTGAGTATATTGGAATTCTCGTAGATAGATGGAGCACATTGGAA
TTCTCAAGTCAGTGGGCCTTCGCCAAGCTTTGCTACGCGCTATGTGAGCTCTCTACTTACTTCGA
TCAGTGGTGGGTAGAAGGCGCTTATGCGCACCCGGGCCTCACGTA
Found at i:298529 original size:18 final size:18
Alignment explanation
Indices: 298506--298555 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
298496 CTTCGGACCA
298506 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
298524 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
298542 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
298556 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 298006 -- 298505
ACATGGGTTCAGACGCTTCAGAAGTATGCATTTTTCTCTAAGAAAATGACCATAGGCTTTTTCAA
AGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGCAAGAGGC
TGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAAATTAAGC
TGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAAC
TCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCCTCCCACT
CCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTC
CTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 298556 -- 299055
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCC
CGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGAACCTTTCATTGAATTTCATTGAAAATTAAGA
ATTCTGTTGCGAAGAAGTAAAATAATTGAGTATATTGGAATTCTCGTAGATAGATGGAGCACATT
GGAATTCTCAAGTCAGTGGGCCTTCGCCAAGCTTTGCTACGCGCTATGTGAGCTCTCTACTTACT
TCGATCAGTGGTGGGTAGAAGGCGCTTATGCGCACCCGGGCCTCA
Found at i:298602 original size:34 final size:34
Alignment explanation
Indices: 298564--298784 Score: 424
Period size: 34 Copynumber: 6.5 Consensus size: 34
298554 CCTCCCGGTA
298564 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298598 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298632 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298666 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298700 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
298734 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
298769 GGTCGGAGTGGCCCTC
1 GGTCGGAGTGGTCCTC
298785 CTATCGGAGG
Statistics
Matches: 185, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
34 168 0.91
35 17 0.09
ACGTcount: A:0.09, C:0.32, G:0.30, T:0.29
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 298064 -- 298563
TTTTCAAAGGGCAGGGGAGGCTCTTTGGAGAAAGGGTGGCGGGGCTTTTAAAAGACAGAAAACGC
AAGAGGCTGTGACTACTCTGAGCTTCGTGAAAAGCTAGGGTTACTTTAATTTAATTTCATTGAAA
ATTAAGCTGTTTTTTCAACTTATAAAGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCG
GACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCAACTCC
TCCCACTCCCCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTC
CCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 298785 -- 299284
CTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTAAGA
ACCTTTCATTGAATTTCATTGAAAATTAAGAATTCTGTTGCGAAGAAGTAAAATAATTGAGTATA
TTGGAATTCTCGTAGATAGATGGAGCACATTGGAATTCTCAAGTCAGTGGGCCTTCGCCAAGCTT
TGCTACGCGCTATGTGAGCTCTCTACTTACTTCGATCAGTGGTGGGTAGAAGGCGCTTATGCGCA
CCCGGGCCTCACGTAGGTACCCTTACCACTAGGCACTACGCGGGTACAGGTGGGAGGCCAGCCGT
GGGGTACCTACCTAGGCTAGCCCCACACTTGGCCAGCTTTGCTACGCGCTATAGGCACCGCCTAG
CAGAGCTTCCTATTTACTCCGATTAGTGGGCACAACGGCGCCTGACCCCTTTTATAGAAGACGCG
CTTTCTTGACCTCCCCTGACCACATAGCGCGTAGCGCACCCACTA
Found at i:299574 original size:17 final size:17
Alignment explanation
Indices: 299552--299592 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
299542 TTATTAACTA
299552 CCAAAGTGTAGAATAAG
1 CCAAAGTGTAGAATAAG
299569 CCAAAGTGTAGAATAAG
1 CCAAAGTGTAGAATAAG
299586 CCAAAGT
1 CCAAAGT
299593 TCTCAACCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (17 bp):
CCAAAGTGTAGAATAAG
Left flanking sequence: Indices 299052 -- 299551
CTCACGTAGGTACCCTTACCACTAGGCACTACGCGGGTACAGGTGGGAGGCCAGCCGTGGGGTAC
CTACCTAGGCTAGCCCCACACTTGGCCAGCTTTGCTACGCGCTATAGGCACCGCCTAGCAGAGCT
TCCTATTTACTCCGATTAGTGGGCACAACGGCGCCTGACCCCTTTTATAGAAGACGCGCTTTCTT
GACCTCCCCTGACCACATAGCGCGTAGCGCACCCACTAGGCGCATACACCCTCTTAGGCGCCAAA
TAGGTTAAAGCGCTACTAGTTGGGCTAGCATACCTAGCGTAGCGACCACTAGGCGCGTAGCCTAG
ACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCCTAG
TTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACCCCC
GGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTA
Right flanking sequence: Indices 299593 -- 300092
TCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGCGTTAATAACCTTTAATTTTCAATG
AAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAGTAGAATAAGCGATTGGACTTTCAC
TAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTACGTGCCACTACTAGTACCCCTCACT
AGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAGTACTTTCAAGCTGCCGGGCGGCCG
GAAAAGCAGAAATGAGGCAATAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
AGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCG
GAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTT
Found at i:299917 original size:34 final size:34
Alignment explanation
Indices: 299874--299975 Score: 150
Period size: 34 Copynumber: 3.0 Consensus size: 34
299864 ATGAGGCAAT
* * *
299874 AAGGGTCCGAGCGAAGCGAGGACAACTCCGACCG
1 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
*
299908 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
1 AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
*
299942 ACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 A-AGGGTCCGAACGAAGTGAGGACCACTCCGACC
299976 TACCGGGAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
34 31 0.50
35 31 0.50
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.09
Consensus pattern (34 bp):
AAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
Left flanking sequence: Indices 299374 -- 299873
TAGACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCC
TAGTTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACC
CCCGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTACCAAAGTGTAGAATAAG
CCAAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGC
GTTAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAG
TAGAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTAC
GTGCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAG
TACTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGCAAT
Right flanking sequence: Indices 299976 -- 300475
TACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCC
TTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAA
TACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGG
TTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCT
GCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCC
GCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGC
AGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAG
TTGTTCAAGGAATGAGAAATAAAATCCCAACTCCTCCAACTCCTC
Found at i:299956 original size:35 final size:35
Alignment explanation
Indices: 299876--299982 Score: 162
Period size: 35 Copynumber: 3.1 Consensus size: 35
299866 GAGGCAATAA
* * * * *
299876 GGGTCCGAGCGAAGCGAGGACAACTCCGACCGA-A
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
299910 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
299945 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
299980 GGG
1 GGG
299983 AGGAGTTGGA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
34 29 0.43
35 38 0.57
ACGTcount: A:0.26, C:0.32, G:0.33, T:0.09
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 299376 -- 299875
GACACCCACAACGTAGCGTGGCCTTTCTCCCACTTACCGATAGGGCCACATAGTAGCGACCCCTA
GTTGGCGCGTAACACGCACCCCACGCCGGCCCCCTTGACCACTATGCATAGCACGTAGCGACCCC
CGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTATTAACTACCAAAGTGTAGAATAAGCC
AAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGAAGACGCGCTTTCTTGAAAGCTGCGT
TAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTTTCTTTAAGTTGTAAATTTTAGTA
GAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACCACTAGTAGTGACGTGTCCCGTACGT
GCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAATTTTAAATTAGATTAAATTAAAGTA
CTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGCAATAA
Right flanking sequence: Indices 299983 -- 300482
AGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCG
GAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAATACAGTT
AGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGGTTCGAAA
CAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCTGCAAAGA
AGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCCGCTGTTG
AGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGCAGCTTTA
ATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAGTTGTTCA
AGGAATGAGAAATAAAATCCCAACTCCTCCAACTCCTCCAACTCC
Found at i:299993 original size:9 final size:9
Alignment explanation
Indices: 299981--300018 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
299971 CGACCTACCG
299981 GGAGGAGTT
1 GGAGGAGTT
299990 GGAGGAGTT
1 GGAGGAGTT
299999 GGAGGAGTT
1 GGAGGAGTT
300008 GGAGGAGTT
1 GGAGGAGTT
300017 GG
1 GG
300019 CGGTAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.58, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 299481 -- 299980
ACTATGCATAGCACGTAGCGACCCCCGGACCACATTGAATTGTGCAGGGCGGGTCGGAAATTTAT
TAACTACCAAAGTGTAGAATAAGCCAAAGTGTAGAATAAGCCAAAGTTCTCAACCCTTTTATAGA
AGACGCGCTTTCTTGAAAGCTGCGTTAATAACCTTTAATTTTCAATGAAATGAAATTAAAGGTTC
TTTCTTTAAGTTGTAAATTTTAGTAGAATAAGCGATTGGACTTTCACTAGGCGGCGCGTAGCACC
ACTAGTAGTGACGTGTCCCGTACGTGCCACTACTAGTACCCCTCACTAGCTAAAGTAACTTATAA
TTTTAAATTAGATTAAATTAAAGTACTTTCAAGCTGCCGGGCGGCCGGAAAAGCAGAAATGAGGC
AATAAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 300019 -- 300518
CGGTAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAA
GCTGCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCT
TTAGGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTT
AAAGGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAA
AGAAGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTA
AAGGTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAAC
TTTGAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAATCCCAACTCCTCCAACTCC
TCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
Found at i:300471 original size:9 final size:9
Alignment explanation
Indices: 300457--300494 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
300447 AAATAAAATC
300457 CCAACTCCT
1 CCAACTCCT
300466 CCAACTCCT
1 CCAACTCCT
300475 CCAACTCCT
1 CCAACTCCT
300484 CCAACTCCT
1 CCAACTCCT
300493 CC
1 CC
300495 CGGTAGGTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 299957 -- 300456
AGTGAGGACCACTCCGACCTACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGCGG
TAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACACAACTAGGCAACTTTAAAAGCT
GCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTCCCGGGTCTCTAATGGGCCTTTA
GGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAAGTACACCACTATAATGCTTAAA
GGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGAGGGAGAATCCGAGGTGCAAAGA
AGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCATTGAATTTCATTGAAAATTAAAG
GTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCAATGAAAAAGTCTTTGTAACTTT
GAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAATC
Right flanking sequence: Indices 300495 -- 300994
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGCCTTTAGGCACTCG
ACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCTAACAAGATCCGCTGTTAAAC
CAGTGAATAAAGGGTGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTATTAGGAATTCGAT
TTCTCCGCTGTTTTGCAGCGTTAAAGTGCTGTTAAACTAATGGTTCTGCGATCCGCTTCTGAGAC
ATGTTCAGGACATGAAGGGATGGCTTGGGCAACCTAATCGCATGG
Found at i:300538 original size:34 final size:34
Alignment explanation
Indices: 300500--300740 Score: 473
Period size: 34 Copynumber: 7.1 Consensus size: 34
300490 CCTCCCGGTA
300500 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300534 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300568 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300602 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300636 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300670 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
300704 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
300739 GG
1 GG
300741 CCTTTAGGCA
Statistics
Matches: 206, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
34 202 0.98
35 4 0.02
ACGTcount: A:0.09, C:0.32, G:0.30, T:0.29
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 300000 -- 300499
GAGGAGTTGGAGGAGTTGGCGGTAAAGAAGAGTTTTTTCCCTTTCCCGGAGTCCCTTTACTCACA
CAACTAGGCAACTTTAAAAGCTGCCGTTCCCTTACAACCAATACAGTTAGTTCCCTTTCCCTTTC
CCGGGTCTCTAATGGGCCTTTAGGTTTCCGGGGTTTGAAGGTTCGAAACAAACCACAGGGGTAAA
GTACACCACTATAATGCTTAAAGGGGGCCTTAAAGGCCGCTGCAAAGAAGGAGAATCTGCTGCGA
GGGAGAATCCGAGGTGCAAAGAAGATTCTGTTGTTGAATCCGCTGTTGAGCTGCTTTAAATTCAT
TGAATTTCATTGAAAATTAAAGGTTCTTAGGACTTAAAGGCAGCTTTAATTTTCAATGAAATTCA
ATGAAAAAGTCTTTGTAACTTTGAATGCGCCCCCCTTAAAGTTGTTCAAGGAATGAGAAATAAAA
TCCCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 300741 -- 301240
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCTGTCGGAGGACCCTAACAAG
ATCCGCTGTTAAACCAGTGAATAAAGGGTGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
ATTAGGAATTCGATTTCTCCGCTGTTTTGCAGCGTTAAAGTGCTGTTAAACTAATGGTTCTGCGA
TCCGCTTCTGAGACATGTTCAGGACATGAAGGGATGGCTTGGGCAACCTAATCGCATGGTGGAAG
GACTAATCCCGGCCGAAGAATCTATCAAGGAATAAAGGTGGGGGAATTCTGTAAAGCGCTAGCGA
CCCCCTACCCCTTCACAAAGCGCTTCGCGCCACCACCACTACTAGCAATGAATATCCTCGAATAT
GGAATATCCTCTAGTACAAGGACCTGTACAGTCGTATCATAACTTTATGCTGGGATTAGCTGAGG
ATGGGTCCCGGAGGAAAAGATGGTATGGTATGGCCCTTTGATAGC
Found at i:302498 original size:18 final size:18
Alignment explanation
Indices: 302475--302521 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
302465 CTAACTCCAT
302475 GGAAGGCACAGAAGACAC
1 GGAAGGCACAGAAGACAC
* * * *
302493 GGAAGGGACGGAATACGC
1 GGAAGGCACAGAAGACAC
302511 GGAAGGCACAG
1 GGAAGGCACAG
302522 GTCGGGAAGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.40, T:0.02
Consensus pattern (18 bp):
GGAAGGCACAGAAGACAC
Left flanking sequence: Indices 301975 -- 302474
GCTAGTAGGGAAGCGGGCCGATACCGACGTACCAATCATCGTCCTTCCCCAAGCCTCTGGTTGGG
GGGCCTTTAAAGTTGCCGTGAAAGCGCTACGCGCCCGCCCCACCCTTGAAGGGGAGGCTAACGGG
GGAGGGGGCATTAAAGATAATTTGCCATAGTAGGGCCGGGTGGGCAAATAGAGCTTACTTCCGAT
TCGGATTCTGCGACGGCTGCTAAGTCGTCGTAGCGGGTAGGCTAGGCGCTAGTGCCTTGCCGGGA
GGTTGTCACACGCCTGGGCGTGTAAAGAAAGGCGGGAAGGCCTAACGGGCTATGGGGGTAGGGAG
GACCCGCCTAAGGTCCAAAGAGCGGGCGGAGCAGTAGGCACGTAATCAGCAGAAGGCGCTTACGA
CACGGAATCGGCTACAGGCACTATGGCTACAGGCGCGAGATTAGCGGAGGCAGAAAACGCGGAAT
GCTAGGCTTTTTGAAGGCTTTATCAGAATCTGAAACTAACTCCAT
Right flanking sequence: Indices 302522 -- 303021
GTCGGGAAGCAGCCTTCCGGGACCTAGAGGGGGCCGGCACACCACGAGCCGGCAGGGGAAGCGCC
TCTCAGAGCGCGGTCCCCTACCTACGGTAACCCACCAATCCAAAGTAGGTCAAGGTGGATGCACT
ACCTTTTCGTGCAGAGCTATGTTACAGTAATTTAATTTCATTGAAAATTAATAAATCACGGCACT
CCTCTCACCCGAAGAAGTGGATGCTTGGGGATCACAGCTGAGACAGACTGTGAATTAACTGGATA
AGGAAGAGCTAGGGTGGCGGGTGGGAGAAGCAAGAGCTATTGAGAAGTCGATTGTTCAATGTGAC
AGCTATACAGACAAAAGATTGAATGCAGTACCCGCTTTAAAAAAGCATCATCTCTCTCACCCACC
CATTCACGAGGAGCTAGCCTTGTCCTTTTCTCGCCATCTCCACCACACGGAATCACGTAGATAGA
AATAAGTGGCGAGGCCCTCTGGAGCGGGATCGTTCCATGGTTCTG
Found at i:303295 original size:34 final size:34
Alignment explanation
Indices: 303257--303324 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
303247 AACTCCCCCA
303257 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
303291 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
303325 CTATCGGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.32, T:0.09
Consensus pattern (34 bp):
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACC
Left flanking sequence: Indices 302757 -- 303256
AGACAGACTGTGAATTAACTGGATAAGGAAGAGCTAGGGTGGCGGGTGGGAGAAGCAAGAGCTAT
TGAGAAGTCGATTGTTCAATGTGACAGCTATACAGACAAAAGATTGAATGCAGTACCCGCTTTAA
AAAAGCATCATCTCTCTCACCCACCCATTCACGAGGAGCTAGCCTTGTCCTTTTCTCGCCATCTC
CACCACACGGAATCACGTAGATAGAAATAAGTGGCGAGGCCCTCTGGAGCGGGATCGTTCCATGG
TTCTGTAAGACCTCGTATGATGCTGTTGGTCCGGTGGCGTATTCTAGTGCACGCATACCGGCGCT
TTCACTTTGTCAAAACACGTATATAGAAGAAGCTTCACAAACCATTCAGTGTGGTTCAGCAACAG
TCGATTCTTCCGTTCCATTCGTTGGAAGGCCTAACGGAATTAACAACGATCCAACCGGACCCACC
CACTTTGTAGGTGGTGGTGGGGTCGGGAGTTGGCCAACTCCCCCA
Right flanking sequence: Indices 303325 -- 303824
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTACTAGGCAGGAAATTCTGTGAGATTT
TGTACGGTGTTCAGTAGGTTCAATTACTACTGTATCGAAAAGAACGCATTGGATGGATGCCTAGG
CATTGAGAAGTAAGGACGCTTTCAAAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGG
ATCTCCAATCGGGAAACCGTATCCAAGCTTTAGGGCATGCTTAAAAGTGCTGCGGCTCCGCTTTG
GACCTCCAAAACTGGCGCGAACCGAAACATCGTTGTAGCCAAAGGAAAGGAAATCAACCGAGACT
CCGTTAGTAGCGGCGAGCGAAAGCGGATTAGGCAAGCGGCAGGGGAAATAACCACCCCCAATACC
CAGGGGGGAACTTGCGGGGGCTTTAAACCCCCAACTCCAACTCCTCCCTTCGGTCGGACCCTGCG
GGATTCTGAAAAGGTTGGAAAATCTGGCCAAAGAAGGTGATAGCC
Found at i:306987 original size:82 final size:82
Alignment explanation
Indices: 306852--307257 Score: 791
Period size: 82 Copynumber: 5.0 Consensus size: 82
306842 GGACCGCAAG
306852 GGCCCTCCGATAGGAGGGCAACTCCG-A--CCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
306914 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
306931 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
306996 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
307013 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
307078 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
307095 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
307160 ACCGATAGGGAGGAGTT
66 ACCGATAGGGAGGAGTT
307177 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
1 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
307242 ACCGATAGGGAGGAGT
66 ACCGATAGGGAGGAGT
307258 GGGGGGAGTT
Statistics
Matches: 324, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
79 26 0.08
80 1 0.00
82 297 0.92
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (82 bp):
GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTT
Left flanking sequence: Indices 306352 -- 306851
TGAATAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACG
TCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTTTGCCGAGAACTGCGAGAAGCCTACCCTAGT
ACGAGAGGACTGGGTTGGGTCAACCTATAGTGTTCCGGTTGTTGTGCCAATAGCAGCGCCGGGTA
GCTAAGTTGGTAGGGAAGAACCGCTGAAAGCATCTAAGCAGGAAATCCTTCTCTAGACAAGTTCT
CCTAAAAGGTGAAAGAGCATCACTTCGATAGGCGAGGGGTGAAAGCACCGCAAGATGGGCGCTTC
CTCGTACTAATAGAGATTTACTTTTGGCAGAACTAGAGAAAGCGCGCCTTGCCGGCCCAGCTTCG
GTTCCCGGCTGGCAAGGGGAAAGCGCGAGGACAGGGGCTTTAGCCTACTCCTTTAAACCCCCACA
CCACCACCATGAAGTGGTGGGGGTTTAAAGGAGTTGGACCGCAAG
Right flanking sequence: Indices 307258 -- 307757
GGGGGGAGTTGGCCAACTCCTTTAAACCCCACCACCCCACATGAATTGGGTGGGTAGGGAGTTGG
AAAGCGCTTGCCAAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAGAAGGTTTCA
ATTCATTTTAAATTAAAGTAAATTAAAGTAACTAGAAGGTTTCAATTCATTTTAAATTAAAGTAA
ATTAAAGTAACTAGAAGGTTTCAATTCATTTTAAATTAAAGTATCACTTATAAATAATAGATAGG
GGTTCAAATTCACAAGGACTTTTTAATTTTGAAATTAAAAAGTCTTTGTAACTTTGTATTTCCCT
TTTTGTACGGAAGTTTCCCCCCTAATAGTTTACTAGAGTGGCTTAGCGTCCCACGCTGAGCCGGG
GTTTGCCAGGCCCACTTAAGGTATCGTGGAGGTTTTAAAGAGGTGGGAGGCCGAAAGACTTTCTT
GCAGGCTACGCTTCCCGTCTATCGACCCTTCGGGCCCCATTGCAC
Found at i:307398 original size:44 final size:44
Alignment explanation
Indices: 307335--307495 Score: 322
Period size: 44 Copynumber: 3.7 Consensus size: 44
307325 AGCGCTTGCC
307335 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
307379 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
307423 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
1 AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
307467 AAGGTTTCAATTCATTTTAAATTAAAGTA
1 AAGGTTTCAATTCATTTTAAATTAAAGTA
307496 TCACTTATAA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 117 1.00
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (44 bp):
AAGGTTTCAATTCATTTTAAATTAAAGTAAATTAAAGTAACTAG
Left flanking sequence: Indices 306835 -- 307334
AGGAGTTGGACCGCAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGGTCC
GAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATTCCGA
TAGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGG
GCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGG
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTGGGGGGAGTTGGCCAACTCCTTTAAACCCCAC
CACCCCACATGAATTGGGTGGGTAGGGAGTTGGAAAGCGCTTGCC
Right flanking sequence: Indices 307496 -- 307995
TCACTTATAAATAATAGATAGGGGTTCAAATTCACAAGGACTTTTTAATTTTGAAATTAAAAAGT
CTTTGTAACTTTGTATTTCCCTTTTTGTACGGAAGTTTCCCCCCTAATAGTTTACTAGAGTGGCT
TAGCGTCCCACGCTGAGCCGGGGTTTGCCAGGCCCACTTAAGGTATCGTGGAGGTTTTAAAGAGG
TGGGAGGCCGAAAGACTTTCTTGCAGGCTACGCTTCCCGTCTATCGACCCTTCGGGCCCCATTGC
ACATTGATTTTACAGCGAGTAATAGGAAGAGTAAGAAGAAGAAATCTTGGTTCGCGCTTTCTCCA
ATTGGGCTCACCTATCCATGCCGAATCAATCAATTCGAAACGTCTAAAATACATGACTTTAAACG
TAAATTCCCGCGAAGCGGGACGCTACCCAATCGCGGGGTAGAGTAATTGGCTAACTCGTTGGGCT
CATGACCCAAGCATGCAGGTTCGAACCCTGCCTCCGCCAAACCGG
Found at i:308353 original size:35 final size:35
Alignment explanation
Indices: 308267--308359 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 35
308257 CCTCCGATAG
* * **
308267 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
308302 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
308337 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
308360 AGGAGTTGGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.25, C:0.33, G:0.31, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 307767 -- 308266
ACAGCGAGTAATAGGAAGAGTAAGAAGAAGAAATCTTGGTTCGCGCTTTCTCCAATTGGGCTCAC
CTATCCATGCCGAATCAATCAATTCGAAACGTCTAAAATACATGACTTTAAACGTAAATTCCCGC
GAAGCGGGACGCTACCCAATCGCGGGGTAGAGTAATTGGCTAACTCGTTGGGCTCATGACCCAAG
CATGCAGGTTCGAACCCTGCCTCCGCCAAACCGGCCCCCGCAATCAAACGCACGCTTTTCCAATA
GAATCACGTAGATAGAATGGATTCTCGAATAAAGCCACTCCGCCCCTTACAGTGGAGGTCCGACC
CCTACAGCTAGCTGGGTGCCTATCGCCTAGAAAGTAAAATGACTTTAATTTCATTTCATTGAAAA
TTAAAGGTTCTTACCGAAAACACCCGGACAGCTGCCAGGGGAAAGTACGCATCACTTCGCTGTCG
TCTGTATAGGGAGAGATCAACTCTGTTTCGAGGGCCCTCCGATAG
Right flanking sequence: Indices 308360 -- 308859
AGGAGTTGGAGGAGTTGGAGGAGTTGGCAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGA
GACTACGGGCCGAGCCTGAGAGCAGGGTGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGG
AGGGCAAGGGCCGGGTCGTGGGTCCCCTGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGG
GCCGAGCCTGAGGGCAGGGTGGTGGGCTGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGA
GCCGCGCTCACGGCACAAATAACAAGTTGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCT
TCTACACGAAAAACCTCAAAAACAACATTGAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
Found at i:308370 original size:9 final size:9
Alignment explanation
Indices: 308358--308386 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
308348 CGACCTACCG
308358 GGAGGAGTT
1 GGAGGAGTT
308367 GGAGGAGTT
1 GGAGGAGTT
308376 GGAGGAGTT
1 GGAGGAGTT
308385 GG
1 GG
308387 CAAGGCCCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 307858 -- 308357
AAACGTCTAAAATACATGACTTTAAACGTAAATTCCCGCGAAGCGGGACGCTACCCAATCGCGGG
GTAGAGTAATTGGCTAACTCGTTGGGCTCATGACCCAAGCATGCAGGTTCGAACCCTGCCTCCGC
CAAACCGGCCCCCGCAATCAAACGCACGCTTTTCCAATAGAATCACGTAGATAGAATGGATTCTC
GAATAAAGCCACTCCGCCCCTTACAGTGGAGGTCCGACCCCTACAGCTAGCTGGGTGCCTATCGC
CTAGAAAGTAAAATGACTTTAATTTCATTTCATTGAAAATTAAAGGTTCTTACCGAAAACACCCG
GACAGCTGCCAGGGGAAAGTACGCATCACTTCGCTGTCGTCTGTATAGGGAGAGATCAACTCTGT
TTCGAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 308387 -- 308886
CAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGGCCGAGCCTGAGAGCAGGG
TGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGGGCCGGGTCGTGGGTCCCC
TGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCTGAGGGCAGGGTGGTGGGC
TGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTCACGGCACAAATAACAAGT
TGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGAAAAACCTCAAAAACAACA
TTGAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
Found at i:308827 original size:65 final size:64
Alignment explanation
Indices: 308739--308883 Score: 272
Period size: 65 Copynumber: 2.2 Consensus size: 64
308729 CCTCCGACAG
308739 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA-AGGGTCCGAACGAAGT
308804 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
*
308868 GAGGACCACTCCGACC
1 GAGGACAACTCCGACC
308884 TACCGGGAGG
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
64 31 0.39
65 48 0.61
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (64 bp):
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 308239 -- 308738
CAACTCTGTTTCGAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTTGG
AGGAGTTGGAGGAGTTGGCAAGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGG
CCGAGCCTGAGAGCAGGGTGGAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGG
GCCGGGTCGTGGGTCCCCTGGTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCT
GAGGGCAGGGTGGTGGGCTGCTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTC
ACGGCACAAATAACAAGTTGACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGA
AAAACCTCAAAAACAACATTGAATCAAAAAAGGGTCCTCCGACAG
Right flanking sequence: Indices 308884 -- 309383
TACCGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGAACCCTGAAATCATCTTTGACACCAAGCA
GCAGCATAGAGTCATCCGTCCCCGTCCTTCGCCACTAGCTCCGCCTTCCCCCTCCTCGTGCCGCC
ACTTCTGGGTGTTGCTGGAAGGAAAAGAAGTTTAAAGTCCTAAAGTCATGTGAGGTTCCGGTGGA
AAAGAGTCAATATTTACTCTTGCAAGCAGCCACGGAGGGCGATCCCCTGCCGAGTAAGAGCACTC
GAGCTTTATGAGTGTGCAGAAGATCTTTTTTGGCCTTCAACATCTCCGAGCATGAATTCCTTAAG
CGGAAGCCATACGACGCCGACCTCACTCCTATTGAGGTCGAGGTTTTACAAGAAGCTATGGTAGC
CCTGGAGAGAAACTTAAAAACTATGCATTTAAGTGAAGTGCTCCTCGAAATCGCTTAAAAGTAAT
TTGAAAAACCATGAAATGAAAGTTCGTGAAGAAGGCTAGGCAGGG
Found at i:308901 original size:9 final size:9
Alignment explanation
Indices: 308889--308919 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
308879 CGACCTACCG
308889 GGAGGAGTT
1 GGAGGAGTT
308898 GGAGGAGTT
1 GGAGGAGTT
308907 GGAGGAGTT
1 GGAGGAGTT
308916 GGAG
1 GGAG
308920 AACCCTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 308389 -- 308888
AGGCCCGGGCTGGTTCAGCTTCGGCAGGGCCTGGGAGACTACGGGCCGAGCCTGAGAGCAGGGTG
GAGGGGCTGCTCCAAAAACACCCATACAATGTTCGGAGGGCAAGGGCCGGGTCGTGGGTCCCCTG
GTCCAGCTTCGGCAGGGCCTGGGAGAACCACTACGGGCCGAGCCTGAGGGCAGGGTGGTGGGCTG
CTCCAAGAAACATCCATTACAAAATTTCGAGGCTGAGCCGCGCTCACGGCACAAATAACAAGTTG
ACAACATGGAAAATTCATCGAGTAATTCGGTTTGCTTCTACACGAAAAACCTCAAAAACAACATT
GAATCAAAAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
AAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
AAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
Right flanking sequence: Indices 308920 -- 309419
AACCCTGAAATCATCTTTGACACCAAGCAGCAGCATAGAGTCATCCGTCCCCGTCCTTCGCCACT
AGCTCCGCCTTCCCCCTCCTCGTGCCGCCACTTCTGGGTGTTGCTGGAAGGAAAAGAAGTTTAAA
GTCCTAAAGTCATGTGAGGTTCCGGTGGAAAAGAGTCAATATTTACTCTTGCAAGCAGCCACGGA
GGGCGATCCCCTGCCGAGTAAGAGCACTCGAGCTTTATGAGTGTGCAGAAGATCTTTTTTGGCCT
TCAACATCTCCGAGCATGAATTCCTTAAGCGGAAGCCATACGACGCCGACCTCACTCCTATTGAG
GTCGAGGTTTTACAAGAAGCTATGGTAGCCCTGGAGAGAAACTTAAAAACTATGCATTTAAGTGA
AGTGCTCCTCGAAATCGCTTAAAAGTAATTTGAAAAACCATGAAATGAAAGTTCGTGAAGAAGGC
TAGGCAGGGCTTCAGTGGTGGCGCCAAACCCTAGGAGCCTTCTTT
Found at i:310175 original size:66 final size:68
Alignment explanation
Indices: 310011--310197 Score: 209
Period size: 71 Copynumber: 2.7 Consensus size: 68
310001 GACCTTTAAA
* * * *
310011 AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAACTCCG
1 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGA-AGGGAGGAGTTGGAGGAGTTGGC-ACTCC-
*
310076 ACCTGT
63 ACCTCT
*
310082 AGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTC-CTCC-C
1 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG-CACTCCAC
*
310145 GTCT
65 CTCT
* *
310149 -GGGTCCGAGCGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGG
1 AGGGTCCGAACGAAGTGAGGACAACTCCG-A--CCGAAGGGAGGAGTTGG
310198 CCTACACTCC
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.25
67 4 0.04
69 21 0.21
70 19 0.19
71 33 0.32
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.14
Consensus pattern (68 bp):
AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCACTCCACC
TCT
Left flanking sequence: Indices 309511 -- 310010
GGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAG
GACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGCCCTTTTAATTAAATAAAAGGTTCGCTCG
GACCCTAGATTTTGTTGCTGGAAGGGGAGTTTTAACTTTCTATAGAAGTGCCCACCTCAAAAGAG
AAAGGGAAGCTCTGAAATACTCTTCTGACGGAGCTTCCAGTTCCAATCCACACTACTCCTTTTGG
CAAGTATCATTGGATCGGTTCAATAATTCTAACGGGTAGCCTAGGAGGGGGAAAAGAATGAACAT
GTTAATCGTACTTCTTCCACACTCTGCACGGGCCGGGGCGAGTAGAAGCAGCACTGTAACGGGCA
CAAAAACTCTTGAATATCAGGGCAGGGGGCCTTCGGCCCCTTTAAAGGTGGGCCGAAGGCCCCCC
TGCCCATAGGGTCTGACCGAAGGGAAGACAACTCCGACCTTTAAA
Right flanking sequence: Indices 310198 -- 310697
CCTACACTCCCGATAGGGTCCGTTCAGGACAACTCCCGATAGGGTCCGTTCAGGACAACTCCGAC
CGATAGGGAGGAGTTGGAGTTGGACAAAAACAAACCGAACAAAAAACTCCACTATGAGTGCCAGA
CGACTTTCGATTATCAAACAACCCGTCTCTTCTACGCTTAACTAGCATTTGATAGATTATCCAAC
CCCGAGCAATCTGAGTCATTGGTGGGGTTTCGGTTCGTTAGCTGCTATTCGTTCAGTAATTTAGA
CCATTACCGGCGTTTTCCCAGCCATGCATTATACACCTCATGTCGATCCAGCTTTCCACAGCGTG
GAACACATTATGAGAGATGTAAAAGGAGGCTGGTTGCTTCGTTATATGCATGCCAATGGGGCTAG
TATGTTCTTCATTGTAGTTTATCTCTATTTCTTCCGTGGTTTATACTACGGAAGTTATACCAGTC
CTAGAGAATTTGTTTGGTGCCTTGGAGTGGTCATCTCACTATTAA
Found at i:310232 original size:26 final size:26
Alignment explanation
Indices: 310203--310259 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
310193 GTTGGCCTAC
310203 ACTCCCGATAGGGTCCGTTCAGGACA
1 ACTCCCGATAGGGTCCGTTCAGGACA
310229 ACTCCCGATAGGGTCCGTTCAGGACA
1 ACTCCCGATAGGGTCCGTTCAGGACA
310255 ACTCC
1 ACTCC
310260 GACCGATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (26 bp):
ACTCCCGATAGGGTCCGTTCAGGACA
Left flanking sequence: Indices 309703 -- 310202
GAGAAAGGGAAGCTCTGAAATACTCTTCTGACGGAGCTTCCAGTTCCAATCCACACTACTCCTTT
TGGCAAGTATCATTGGATCGGTTCAATAATTCTAACGGGTAGCCTAGGAGGGGGAAAAGAATGAA
CATGTTAATCGTACTTCTTCCACACTCTGCACGGGCCGGGGCGAGTAGAAGCAGCACTGTAACGG
GCACAAAAACTCTTGAATATCAGGGCAGGGGGCCTTCGGCCCCTTTAAAGGTGGGCCGAAGGCCC
CCCTGCCCATAGGGTCTGACCGAAGGGAAGACAACTCCGACCTTTAAAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAACTCCGACCTGTAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCCGTCTGGGTCCGAG
CGAAGCGAGGACAACTCCGAATTCCGAAGGGAGGAGTTGGCCTAC
Right flanking sequence: Indices 310260 -- 310759
GACCGATAGGGAGGAGTTGGAGTTGGACAAAAACAAACCGAACAAAAAACTCCACTATGAGTGCC
AGACGACTTTCGATTATCAAACAACCCGTCTCTTCTACGCTTAACTAGCATTTGATAGATTATCC
AACCCCGAGCAATCTGAGTCATTGGTGGGGTTTCGGTTCGTTAGCTGCTATTCGTTCAGTAATTT
AGACCATTACCGGCGTTTTCCCAGCCATGCATTATACACCTCATGTCGATCCAGCTTTCCACAGC
GTGGAACACATTATGAGAGATGTAAAAGGAGGCTGGTTGCTTCGTTATATGCATGCCAATGGGGC
TAGTATGTTCTTCATTGTAGTTTATCTCTATTTCTTCCGTGGTTTATACTACGGAAGTTATACCA
GTCCTAGAGAATTTGTTTGGTGCCTTGGAGTGGTCATCTCACTATTAATGATTGTGACTGCTTTT
ATAGGGTACGTACTACCTCGGGGTCAAATGAGCTTTCGGGGAGCT
Found at i:313955 original size:18 final size:18
Alignment explanation
Indices: 313914--313956 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
313904 GAGTTGGTCT
313914 AAGATTCGACGGAGGTAG
1 AAGATTCGACGGAGGTAG
* *
313932 AGGATTCGTCGGCAGG-AG
1 AAGATTCGACGG-AGGTAG
313950 AAGATTC
1 AAGATTC
313957 AGCAGGAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.30, C:0.14, G:0.37, T:0.19
Consensus pattern (18 bp):
AAGATTCGACGGAGGTAG
Left flanking sequence: Indices 313414 -- 313913
ATATTTTCTCAGGATGAGGCAAAACGCGTTAGCGTTTTGGGGGAAAACGCGTCCCGCGTTTTCCC
CCCGACAGCAAGAGTGCCATGGGTTTTGAATCTTGTTGGAATCCAAGACTCGGAAGAAGCGGAAG
GGCTTCGTTCACCAAGAATCGTTTGGCCAGAACCATGTAAACCGAACCTTTTTTCACCGGAACGA
TTAAACAAAAAAAGAGTTTGGATTGAACCAACCAGGATTTGGCGTGACCGTGAAAAAAGGGTCAA
AGGTTTTCTTCCTAATTCAATGAAAGGTGGGTATGCTGTAGCTGTCGCAGGGCCCGTAGCTCCTC
CTCCCAGGAGTCTTTTCCGCAGGCGTCGGGGATTCAGCGGAAATGGTAGATTCAACAGAAGCAGA
AGATTCGTATTCAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGCCTAAAGGCCCCCTGCCC
TCCGACAGGAGGGCAACAAATAATTCCGAAGGGAGGAGTTGGTCT
Right flanking sequence: Indices 313957 -- 314456
AGCAGGAATGGTTGGATAAAATTCAAGATTCTGAACATGAACCCGAAGGACTGGAATATCGTGGT
AGAAGCGATTTGTGCTGCGCCAACCTTTTCGAAGAGGAAAAAGCCGTGGTTACTTTAATCTAATT
TCATTGAAAATGAAAGGTTACTTAGGACAACAGCGCTTTTAAAAGGGCAGCCCTTTCTAAGGCTC
AAGCACCACTAGACTAAGCGTTTGCAGGGGGCGGCCGCAGCCTTCTAAGCACCAGCAGCAATCGT
ACCACCGGAAGTCTAACCAACAGCCTCCATTGCATCAATAGCCTCCGGCACCAGCAACAGCCTAT
TAAGCACTATTAGCAGCCTCTTAACTAGCAACAGCAACATTCTAAACATCAGCCTAGCAGCACCA
ATAGCCTCTCCTTAACCAGCCACCGCTGATGCAGCCGGCACCAGCAGCCTATTAAGCATTACCAG
AAGTTTTTCAAGAGTTTCTTACTAGGGAATACGCTGCTGCTTCTA
Found at i:315350 original size:20 final size:21
Alignment explanation
Indices: 315304--315353 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 21
315294 TATCGATGGG
315304 TGGGCAAGTCGGCCTAGCTTTCTT
1 TGGGCAAGTCGGCCTAG---TCTT
315328 TGGGCAAGTCGGCCTAG-CTT
1 TGGGCAAGTCGGCCTAGTCTT
315348 TGGGCA
1 TGGGCA
315354 GGCGGGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.35
24 17 0.65
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (21 bp):
TGGGCAAGTCGGCCTAGTCTT
Left flanking sequence: Indices 314804 -- 315303
GCGTGCGCTTAGTGAGGAGAAGCGGCTGCTGCTAACGGAAGCGCTTTACTTTAAAGTTGCTTTAA
TTTTCAATGAAATTAAATGAAAGGTTCTTTACCGACTTTTAAAAGGGCCCTTTTAAAAGGAGGAA
TGATGCTTTTTCTATCGGAATGAAGGATCTTAGCCTCCCTATCCATATGCAGTAGCTATGATTGC
GCCTCTACAGGAAAGGGGCGGGCTTGACGACCATCTCACCGAAGAAAGATGAACAGCTTCCGCCA
CTTTATAGCGCTCCCAACCTAACCGGATATGAAGGCAGGGAATATTCGGACTGACCCTCTATCGT
GGTCCTTGCACTATGAAGCCTGTTACGTAGGGATTAGCTAAATGGAAGCGGAGGTGCAGATCAAA
GGAAGTGGGCGGGTGCACGATTCCCATACTGGTGTGGGGCTTTTTTTCTCTCTTATCTCCCTCCA
CGAGAAGGAACGGAGAAGGCTTGAAGGAGAGTGCATATCGATGGG
Right flanking sequence: Indices 315354 -- 315853
GGCGGGACTAGCTCTGGGTCGGCCTAGCGGGCGCACAGTGCCTAGCTTTGGGCGAAGGCGGGACT
TGCTTTTTCTCCGGGCGAAGGCGCCGGGACTATAGCTTTGGGTTCGACCCCCTAAAGGGTATTTA
AAGGGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACAACTCCTCCCTAAGCCTTAGTCCCAGTTGATGATTTTCCGACAACTCTATCTGGCC
TTTCTAGAAAGCCGATTCTGCCCCTCGAGCAGACGATCTTGAACCCTCCTTCCTTCAGCCCTCTC
GCCGTAGCACCACCCCATCTCCACCACACAGAATCACGTAGATAGAAAGAGCCTCTGGAGCGGGA
TTGTTTCATGGGCGAAGCCGCCCCAATTCAATACACGATTGGCGCTATAGGGGATTGGTGAATGG
GGGATGGTGCTTGAGCTTGAGCGAAAGGGAAGGCGGGGTTGAGCG
Found at i:316154 original size:51 final size:51
Alignment explanation
Indices: 316085--316181 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 51
316075 GCCTTTTGAC
*
316085 TCCCCTTTTTTGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
1 TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
*
316136 TCCCCTTTTTCGCTTCCAGAGGGAGAATCGATGGATGCCAAAACCT
1 TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCT
316182 AACCTACACA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (51 bp):
TCCCCTTTTTCGCCTCCAGAGGGAGAATCGATGGATGCCAAAACCTTTGTT
Left flanking sequence: Indices 315585 -- 316084
TGATGATTTTCCGACAACTCTATCTGGCCTTTCTAGAAAGCCGATTCTGCCCCTCGAGCAGACGA
TCTTGAACCCTCCTTCCTTCAGCCCTCTCGCCGTAGCACCACCCCATCTCCACCACACAGAATCA
CGTAGATAGAAAGAGCCTCTGGAGCGGGATTGTTTCATGGGCGAAGCCGCCCCAATTCAATACAC
GATTGGCGCTATAGGGGATTGGTGAATGGGGGATGGTGCTTGAGCTTGAGCGAAAGGGAAGGCGG
GGTTGAGCGAAAGGTTTCACAGGATGGTGCACCTTTTAAAAGGTCGCGAAAGGTGAGTGGGCCCA
TGTCCTGTTAGGTTGCTTGGGTGTGTTGTGTGGTGGCAGCAAATCCCGTAAATAGAAAGCTGGCT
ACGGCTAGCGAGCGGGAATCCGAAATGGCAGGCTTGGGCACTTTAATGCGCCGGTAAGTTACTTT
AATTTAATTTCATTGAAAATTAAGTTGAAAAAACCGCCTTTTGAC
Right flanking sequence: Indices 316182 -- 316681
AACCTACACACCGCTTTCATCGAAGATGGAATCCTTTACTCCCTATTGAGCGAACCATTCTGCAG
GGAGAGGGACTACGCCGATAGGCCCAATGGGAGGTTCACTAGCCACAAGAAGGCCTAACGGCGCC
TTCGACCCCAGTGACCTACCAGTTTAACGAAGGTAGAGGAGCTTCCGAGCCCTTCCACCAACTCT
GGCGGGCAATCGTCCCTTCACTGCCATCCCTTCATGAAAAATAAAGTAGCACCACCTTCCTCAGC
CAACCTCGGCCCTTGAATTATCGGGGAATCAGTAAATAAGTGAAAGCTCATTTTCACCCTTTTAA
ATTAAAGTCACGTACTTTAACGCAGCAGATTCAAGCTTTGGCGTCTTCTGCCTCCCCCTTGCCCG
ACAAAATTTCGTATAGATAGTACTTTGGTTCTCGAAAGCGAAGGGCAGGGGGGCGCGTTAGCGCC
CCCTTTCAAGGGCAGCCTGGCAGGCTGACCTGCCAAAGTCCAAGT
Found at i:317266 original size:41 final size:39
Alignment explanation
Indices: 317220--317311 Score: 123
Period size: 39 Copynumber: 2.3 Consensus size: 39
317210 GATCGTGCAT
*
317220 AATCGTCTGATCTAAGGAAT-AATTGTCTCCCCCCTCCTCAG
1 AATCGTCTGATC-AA-G-ATCAATCGTCTCCCCCCTCCTCAG
* *
317261 AATCGTCTGATCAAGATCGATCGTCTTCCCCCTCCTCAG
1 AATCGTCTGATCAAGATCAATCGTCTCCCCCCTCCTCAG
317300 AATCGTCTGATC
1 AATCGTCTGATC
317312 GTTGGTCTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.04
39 31 0.66
40 2 0.04
41 12 0.26
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (39 bp):
AATCGTCTGATCAAGATCAATCGTCTCCCCCCTCCTCAG
Left flanking sequence: Indices 316720 -- 317219
TACTCTTACGGAGGCCTCGCTCTGTTGGACTAAGATTCTTCTGAGATTGGATCTTTGTCATTCAT
GTTAGTACTATGACCCGAAAACAGAGCGATCTGTATCATTGGGTATCAGCTTCGCACTCTTACCC
AGAGATTGGCGTAAATAATAAGCGGAGATTCTTCGACCTGCCGCTTCAGGGGAATAGTTCCAATG
GTAGAACAATGGTCTCCAAAACCAAAGGTTAAGGGTTCGAATCCCTTTTCTCCTGATTCACCTAT
TAGATAGTCCTTTCCCACTCTCACTACTAAGTGCTCCCGGCAGCTGAGCTTCCAGCCTAGCAATT
TGCACACGTGATTTAGCCGGCAAAGAGAAGACGCATCGATCGTCTCTGTCTTCGTCTGCCGGATC
TAGGGCTTTGGGTTATCGTCTGATCGCTCGCCGGGGCTAGGAGGATAATCGAATTCTGCTGAAGC
CTTTAAGAGCGTCTGCTTCTACGCAAACATCGTCTGATCGTGCAT
Right flanking sequence: Indices 317312 -- 317811
GTTGGTCTGGGGGATAGAATCGTCTTATCTGGGGGCTATAATCGAATTCTGCTCTAGGGTCCGAG
CGAAGCGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACAACCCCGACCTACCGGGAGGAGTTGGGGGAGTTGGGCATAATCGTCTGGTTGGAGG
TCTTTTGTTGTTTTTTGACATTTTTGCCTCGAACGCCCAGAAAGATCTGCCTAAGCCGCTTTTAA
AAGCGCGGCTCAATTCCACACAAGGACGTGTCCATGCCGGCAGCGCGCCACCCCTACGCTACGCG
TGCTCGACACCGCAGGTAACTATCATACGAAACCCGTAATCTCACCGGAGAACGGACCCCGGCAT
ATGAGGCTAACGTCCCCTCTCTGTCTCCACGTGCAGGTCCGTCGAGGCTACCCTGCTTCAACGAT
GGCTTCCCGCCGCATTGACGCTTTATGAGAGGGAAAAAAAGCTTC
Found at i:320006 original size:33 final size:33
Alignment explanation
Indices: 319954--320048 Score: 136
Period size: 33 Copynumber: 2.9 Consensus size: 33
319944 TACTTAGGGC
* * *
319954 GGAACTAGCTGAAAGGGATAAGGAACTTGAGGA
1 GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
*
319987 GGAACTGGCTAAAAAGGATAAGGAACATGAGGA
1 GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
* *
320020 GGGACTGGCTAAAAAGGATGAGGAACTTG
1 GGAACTGGCTAAAAAGGATAAGGAACTTG
320049 GCAGAGTTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.40, C:0.09, G:0.36, T:0.15
Consensus pattern (33 bp):
GGAACTGGCTAAAAAGGATAAGGAACTTGAGGA
Left flanking sequence: Indices 319454 -- 319953
ATGACTTCAACTTCACCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGACCGTCTTTGACA
GGATTCGAGCCCTATAAGTCTCCCCATTGCTTGTTAGTTAAGTGGGGAGAGAGAACTAGCCCCAT
CTCTTGATTACGAAGATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTC
CCCTAAAGGGAATGCCCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTT
CTTCTAATTCCTCTAGGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACC
ACCTTGGTTCAGGGCGGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGAT
GCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACC
CAAGGAAGTGATCGATATTGGTGAAGCAACCTATATACTTAGGGC
Right flanking sequence: Indices 320049 -- 320548
GCAGAGTTGGCTAAACTTAAGGAAGAAAAAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTC
CTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAAC
TCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTT
TTTTTCGATCCTTATTAAGGTACTCACTCGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGT
AAAGGCAAGGATCAACAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAG
GAAGAAAGGACCGGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTA
ATAGGAAGAAAGGACCATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTC
ACAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTACGCTC
Found at i:320063 original size:31 final size:33
Alignment explanation
Indices: 319969--320063 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 33
319959 TAGCTGAAAG
* *
319969 GGATAAGGAACTTGAGGAG-GAACTGGCTAAAAA
1 GGATAAGGAACATGAGCAGAG-ACTGGCTAAAAA
* *
320002 GGATAAGGAACATGAGGAGGGACTGGCTAAAAA
1 GGATAAGGAACATGAGCAGAGACTGGCTAAAAA
* * *
320035 GGATGAGGAACTTG-GCAGAG-TTGGCTAAA
1 GGATAAGGAACATGAGCAGAGACTGGCTAAA
320064 CTTAAGGAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
31 8 0.15
32 4 0.07
33 42 0.76
34 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.36, T:0.16
Consensus pattern (33 bp):
GGATAAGGAACATGAGCAGAGACTGGCTAAAAA
Left flanking sequence: Indices 319469 -- 319968
CCATCCTGGGAAGAGTTCGAGAGAGGGGAAAGGCTAGACCGTCTTTGACAGGATTCGAGCCCTAT
AAGTCTCCCCATTGCTTGTTAGTTAAGTGGGGAGAGAGAACTAGCCCCATCTCTTGATTACGAAG
ATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTCCCCTAAAGGGAATGC
CCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTTCTTCTAATTCCTCTA
GGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACCACCTTGGTTCAGGGC
GGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGATGCTAAGTTGAACACT
AAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACCCAAGGAAGTGATCGA
TATTGGTGAAGCAACCTATATACTTAGGGCGGAACTAGCTGAAAG
Right flanking sequence: Indices 320064 -- 320563
CTTAAGGAAGAAAAAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTGACCTGGCAGTGC
CAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAA
TTCGGAGTTGTCCTCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTAT
TAAGGTACTCACTCGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAAGGATCAA
CAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAGGACCGGA
TCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAGGAC
CATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCC
CCTATCGGGGGTAAGTGGCTCGCTACGCTCGCCCGAATTGCGTAT
Found at i:320167 original size:46 final size:46
Alignment explanation
Indices: 320084--320207 Score: 227
Period size: 46 Copynumber: 2.8 Consensus size: 46
320074 AAAAAGGCCG
320084 GCCAACTCCTCCCTATCGG---TCGGAGTTGTCCTGACCTGGCAGT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
320127 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
320173 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCT
1 GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCT
320208 CCTGTCGGAG
Statistics
Matches: 78, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
43 19 0.24
46 59 0.76
ACGTcount: A:0.16, C:0.34, G:0.23, T:0.27
Consensus pattern (46 bp):
GCCAACTCCTCCCTATCGGAATTCGGAGTTGTCCTGACCTGGCAGT
Left flanking sequence: Indices 319584 -- 320083
CTCTTGATTACGAAGATCACTCAACAGCAAGTAGTATTCGCTACATTGTAAATTGACACGATCTC
CCCTAAAGGGAATGCCCGGTACATTCCTCGTCCTTGCCATGGGCCGGAATCCACCCACCGCATTT
CTTCTAATTCCTCTAGGGCCTGCACTTGCATTAGCAATTCACGTATATAGGAGGTATGGCCTACC
ACCTTGGTTCAGGGCGGGTGCTAGCCTCCCCGTTGCCTTACCTAGCAGTGTAAGCCTTTAAAGAT
GCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGATAAGGGAGAATGGGTTGGCACTGAACC
CAAGGAAGTGATCGATATTGGTGAAGCAACCTATATACTTAGGGCGGAACTAGCTGAAAGGGATA
AGGAACTTGAGGAGGAACTGGCTAAAAAGGATAAGGAACATGAGGAGGGACTGGCTAAAAAGGAT
GAGGAACTTGGCAGAGTTGGCTAAACTTAAGGAAGAAAAAGGCCG
Right flanking sequence: Indices 320208 -- 320707
CCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTATTAAGGTACTCACTC
GAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAAGGATCAACAAGCAGCCTTGGA
ACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAGGACCGGATCAACAAGCAGCCT
TGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAGGACCATCTTAGGGTAGA
CCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCCCCTATCGGGGGTAA
GTGGCTCGCTACGCTCGCCCGAATTGCGTATGTATATAGGAACAGTGCAGGGAAAGGCCTTCAAA
AATGGCAGTGGTAAGACTTGTATGCCCTTGCCTCACTGGGTGGCCTATTTCCCTCTCCTTCAGAT
GGGCAAGAGGTTAGCGCGGGGCAGAGGCGGGAGGGGAAAGCAGAG
Found at i:320394 original size:69 final size:69
Alignment explanation
Indices: 320317--320454 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
320307 GTAAAGGCAA
* *
320317 GGATCAACAAGCAGCCTTGGAACAGTTAGCCAAAAGGTGTAGGGAGCTTTCTAATAGGAAGAAAG
1 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
320382 GACC
66 GACC
320386 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
1 GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
320451 GACC
66 GACC
320455 ATCTTAGGGT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (69 bp):
GGATCAACAAGCAGCCTTGAAACAGTTAGCCAAAAGGTGTAAGGAGCTTTCTAATAGGAAGAAAG
GACC
Left flanking sequence: Indices 319817 -- 320316
TACCTAGCAGTGTAAGCCTTTAAAGATGCTAAGTTGAACACTAAAAGGGATCAGGTTTATAATGA
TAAGGGAGAATGGGTTGGCACTGAACCCAAGGAAGTGATCGATATTGGTGAAGCAACCTATATAC
TTAGGGCGGAACTAGCTGAAAGGGATAAGGAACTTGAGGAGGAACTGGCTAAAAAGGATAAGGAA
CATGAGGAGGGACTGGCTAAAAAGGATGAGGAACTTGGCAGAGTTGGCTAAACTTAAGGAAGAAA
AAGGCCGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTA
TCGGAATTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGTCC
TCCTGTCGGAGGACCCTTAAGCCTCTTCAATTAAGTTTTTTTCGATCCTTATTAAGGTACTCACT
CGAGAGTGTTTCAAAACTACTAGCTCCAGCTAAAAGTAAAGGCAA
Right flanking sequence: Indices 320455 -- 320954
ATCTTAGGGTAGACCTCTAGCCGCATACGGCATCTTACAGAACCATCTCACAGGACCCTTACCCC
CTATCGGGGGTAAGTGGCTCGCTACGCTCGCCCGAATTGCGTATGTATATAGGAACAGTGCAGGG
AAAGGCCTTCAAAAATGGCAGTGGTAAGACTTGTATGCCCTTGCCTCACTGGGTGGCCTATTTCC
CTCTCCTTCAGATGGGCAAGAGGTTAGCGCGGGGCAGAGGCGGGAGGGGAAAGCAGAGACTCGGG
TAGTATTCGCCTTCAGCCTCCGAAGGGCTTCAAACGTGTAGCCCTGGCCTAAGTAACTTAATTTT
CAATGAAATTAAACTAAAGTAACTTAGGCTTTCGTTAATTTACGATCTTTAATTTTAACCTTTTA
AAAGTATCGTAAATTAACGAAAGCCTAAGTTACTTTAGTTTTAAAAGGGATTCGAAGAATCCCTG
TTCATTAATCGAAATAATTTCGTATATAGAACTTTAAAGTGCTTC
Found at i:321746 original size:24 final size:21
Alignment explanation
Indices: 321709--321775 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 21
321699 CATTATTCGA
321709 CTAATTTTAAATTAATGAACC
1 CTAATTTTAAATTAATGAACC
*
321730 CTAATAGCTTTCAATTAATGAACC
1 CTAAT---TTTAAATTAATGAACC
321754 CTAATTTTAAATTAATGAACC
1 CTAATTTTAAATTAATGAACC
321775 C
1 C
321776 GTATAGGCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 21 0.51
24 20 0.49
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (21 bp):
CTAATTTTAAATTAATGAACC
Left flanking sequence: Indices 321209 -- 321708
CGGGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGAGGAC
AACTCCGACCTACCGGGAGGAGTTGGGGGACAACAAATGATTCCGCCTTTAAAGAGGAGTTGGAA
ATGGGGTTATGGAAAATGTTTGAGAATCCATTCATGGGGTGCCGGGAAAATGAGGTCGATGCCTT
TTCCCACGTAGCGAGTAGCCAGTTTCTCCGATGCAGCAGTTTCAGTAGCCCCAGCAGCAGAAGCA
GCTGTAGTTTCAGTTTCAGTCCCAGCAGAGTTCGCCCCAGCAGTAAGAAATTTCATTTTCAATGA
AATTCAATGAAAGGTTCTTTACGCTTCCGCTGGCGCACTTAAATAGCGCCACTAAACCACAACTA
TTGGCGCGGGCAGTTCTCTCTTCTTGCCCACCCACTCACACGCAGGCGGGCACTCTTCTTCAAAA
GGGTGGGGTGCCGGGGGAGGGGGACCCTCGCACCTCATTATTCGA
Right flanking sequence: Indices 321776 -- 322275
GTATAGGCTCGGCTTAGGCGGCCTAGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGC
GCTATACGCGCGCTGACACGTGCCCGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAA
AGCATCCCACCTGAGTGTGCTGCACTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCT
GTGCGGTGTGCGCCCAACCCCTTCCCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGA
GCCCTAAACTAGCCCAGCACATAAGTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGA
ATATGGGGTGTGGGGCCCCGGATCTTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTC
ACCTTCTTCGTAATCTCCGTCCCCAACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTTTGGAG
AGTTTCCATTCGAATGCTGTGGAGAGTTTCCATTTGAATGCTGTG
Found at i:322258 original size:24 final size:24
Alignment explanation
Indices: 322226--322279 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
322216 GGTTCCTCTT
322226 TGGAGAGTTTCCATTCGAATGCTG
1 TGGAGAGTTTCCATTCGAATGCTG
*
322250 TGGAGAGTTTCCATTTGAATGCTG
1 TGGAGAGTTTCCATTCGAATGCTG
322274 TGGAGA
1 TGGAGA
322280 AAATCCATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.33
Consensus pattern (24 bp):
TGGAGAGTTTCCATTCGAATGCTG
Left flanking sequence: Indices 321726 -- 322225
AACCCTAATAGCTTTCAATTAATGAACCCTAATTTTAAATTAATGAACCCGTATAGGCTCGGCTT
AGGCGGCCTAGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGCGCTATACGCGCGCTG
ACACGTGCCCGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAAAGCATCCCACCTGAG
TGTGCTGCACTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCTGTGCGGTGTGCGCCC
AACCCCTTCCCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGAGCCCTAAACTAGCCC
AGCACATAAGTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGAATATGGGGTGTGGGG
CCCCGGATCTTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTCACCTTCTTCGTAATC
TCCGTCCCCAACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTT
Right flanking sequence: Indices 322280 -- 322779
AAATCCATTGCTAAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTA
TCGGATTATTCATCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCAT
ATGCATTCACCCCTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGA
GGAAACAGTCACGGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCC
CCCGTAGGAAAACGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGG
TGGGGTGCGCCCTCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTC
CGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTG
Found at i:322286 original size:24 final size:24
Alignment explanation
Indices: 322235--322288 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
322225 TTGGAGAGTT
***
322235 TCCATTCGAATGCTGTGGAGAGTT
1 TCCATTCGAATGCTGTGGAGAAAA
*
322259 TCCATTTGAATGCTGTGGAGAAAA
1 TCCATTCGAATGCTGTGGAGAAAA
322283 TCCATT
1 TCCATT
322289 GCTAAGTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (24 bp):
TCCATTCGAATGCTGTGGAGAAAA
Left flanking sequence: Indices 321735 -- 322234
AGCTTTCAATTAATGAACCCTAATTTTAAATTAATGAACCCGTATAGGCTCGGCTTAGGCGGCCT
AGGCTCAGCGCGCGTAGCTAGGCTTAGGCGCCTGCCCCAGCGCTATACGCGCGCTGACACGTGCC
CGCACATCCCATTCCCTAAGTGGGCGCTAGACGGAGGAGAAAGCATCCCACCTGAGTGTGCTGCA
CTAGCAGGCCCTTCACTCCGGATAAGTTCCTACCGTATCCTGTGCGGTGTGCGCCCAACCCCTTC
CCGGGACTTGGAAAGTGCGCTTCCCAGTGTTCCCTAAGCGAGCCCTAAACTAGCCCAGCACATAA
GTTCTCGCAATGGAAAAATTGAATAGAAAGCCGCATACTGAATATGGGGTGTGGGGCCCCGGATC
TTCTGATTTCTGATATTGCTGCTACTTAAATGCTTTACTTCACCTTCTTCGTAATCTCCGTCCCC
AACATCAACTTCCGTTTTCTCGTTATGGTTCCTCTTTGGAGAGTT
Right flanking sequence: Indices 322289 -- 322788
GCTAAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTATCGGATTAT
TCATCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCATATGCATTCA
CCCCTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGT
CACGGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGA
AAACGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCG
CCCTCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACA
ACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCA
CTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGTCCTCCGA
Found at i:322849 original size:34 final size:35
Alignment explanation
Indices: 322792--322876 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 35
322782 CCTCCGACAG
*
322792 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
322827 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
322861 GAGGACCACTCCGACC
1 GAGGACCACTCCGACC
322877 TACCGGGAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 32 0.65
35 17 0.35
ACGTcount: A:0.29, C:0.31, G:0.31, T:0.09
Consensus pattern (35 bp):
GAGGACCACTCCGACCGATAGGGTCCGAACGAAGT
Left flanking sequence: Indices 322292 -- 322791
AAGTGCTGCCAGTGGAGAAAACCCATTGCTAGGTGTCATCGAAAAGAAAGGTATCGGATTATTCA
TCGGAACAGAAGGACCTGGAGAAGAGCGAGCGAAGCGAGCCTGTAAGGCTCATATGCATTCACCC
CTCGTAAAAACCGGTAGATCTCCTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGTCAC
GGTCTGTACTTATCTAAACCCCACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGAAAA
CGCGTAGCGTTTTCCTGGGCCCTCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCGCCC
TCACTTGGCCTCGCCTCCTTTCCCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACAACT
CCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTC
CGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGTCCTCCGACAG
Right flanking sequence: Indices 322877 -- 323376
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCC
TTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCC
CTGGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTT
CTTCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAA
ACTGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTG
GGTTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCT
CTGTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGC
TAGGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAAACCC
Found at i:322975 original size:24 final size:26
Alignment explanation
Indices: 322944--323008 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
322934 GTACTTCCTT
322944 CCCTCTCTTCCCTAGGGTAGAGGAAA
1 CCCTCTCTTCCCTAGGGTAGAGGAAA
322970 CCCTCTCTTCCCTAGGGTAGAGGAAA
1 CCCTCTCTTCCCTAGGGTAGAGGAAA
322996 CCCTCTCTTCCCT
1 CCCTCTCTTCCCT
323009 GGAACTCTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.37, G:0.18, T:0.26
Consensus pattern (26 bp):
CCCTCTCTTCCCTAGGGTAGAGGAAA
Left flanking sequence: Indices 322444 -- 322943
CTCTAGGTTTCTTGGGAAAACAAGAAAGAGAGGAAACAGTCACGGTCTGTACTTATCTAAACCCC
ACCCACCAAGGGGGCAGGGGGCCTTTAGGCCCCCGTAGGAAAACGCGTAGCGTTTTCCTGGGCCC
TCCCTTTGCCTCGCCTCCCATGAAGAAGAGGTGGGGTGCGCCCTCACTTGGCCTCGCCTCCTTTC
CCCCGGTAGTGCCAATTCTATATGAAGGGTCCGGAGGACAACTCCGACCCTCTCCCTATCGGTCG
AGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGT
GGGGGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACC
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCCTT
Right flanking sequence: Indices 323009 -- 323508
GGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTTCT
TCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAAAC
TGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTGGG
TTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCTCT
GTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAGCTA
GGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTATCTTCCCTGGGGTAAAGGAA
ACTCTCTCTTCTCTAGTTGAGGGAGAGGGAACCTTTAGCGGCAGGGAGAGGAAACCTCTAGCGGC
AGGGAAGGGAAACTTTCCTTCCCTCGGGAAAGGAAACCCCTCTTC
Found at i:323391 original size:26 final size:26
Alignment explanation
Indices: 323331--323414 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
323321 TCTTCCTTAG
*
323331 CTAGGGTGAAGGAAATTCCCTCTCTTCC
1 CTAGGGTAAAGGAAA--CCCTCTCTTCC
* *
323359 CTAGGGTAGAGGAAACCCTATCTTCC
1 CTAGGGTAAAGGAAACCCTCTCTTCC
* * *
323385 CTGGGGTAAAGGAAACTCTCTCTTCT
1 CTAGGGTAAAGGAAACCCTCTCTTCC
323411 CTAG
1 CTAG
323415 TTGAGGGAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 34 0.72
28 13 0.28
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (26 bp):
CTAGGGTAAAGGAAACCCTCTCTTCC
Left flanking sequence: Indices 322831 -- 323330
ACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGG
AGTGGGGGGAGTTGGTCCTCCGATCAGCCCATTCCCCGGTACTTCCTTCCCTCTCTTCCCTAGGG
TAGAGGAAACCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCTGGAACTCTCTTCCCTAG
GGGAAAGAAACTCTCTTCTTTAGCTAAGGGAAAGGACCTTCCCTTTCTTCCCTTCTTTCCCGGGA
AAGGGGGGCTCCTGGCACAGAATAACTTGGCACTGGTGGAACCGAAACTGTTGGTGCCGAAAGTG
TTGGAATTGCTATAGCTCTTGCTTTCGGCCTTGTAGGCGATGTTTGGGTTGTGAAGTGCCTGACA
CGTGCGGGCCCGCCATCATCAATTGCTTGCTCCCGAAACAAGGCCTCTGTAGGGCTGGCGATGGG
GCGATGCTGAGAGGCAGGGAATGAGAAGGAAACTCTCTTCCTTAG
Right flanking sequence: Indices 323415 -- 323914
TTGAGGGAGAGGGAACCTTTAGCGGCAGGGAGAGGAAACCTCTAGCGGCAGGGAAGGGAAACTTT
CCTTCCCTCGGGAAAGGAAACCCCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCTCCTTCCCTTC
TCTCTCTTCCCGCTGGGTAGAGCAAACTCCCCTCCAGCAGACAATCGGACGGTAATCAGACGGTA
AGACGAGAGATTGGACAATTAGACGAGAGGATGGGACGATAACTCCAAGAAGACGAGAGATACCT
CTCCCAGCGGGTAAAGGAAAGGGAAGGGGAGGCTTTCTCTTCCGGTGCTTGGGAACTGATTCAAC
GTCGACTGATAAGCACTGCTGATGGCAATTAGAACCGCTGTTGAGGACACTGGAATCAGCCCTTT
TAAGGGTTATGAAATTGTCGTGCACTGTAGAAATGGGTGCGCCCTTTTAATTCCTTCACGAGTTT
CCTAGTTAGGATTACATCCAAGACGTCCTGAATTCAACTAATTTT
Found at i:323448 original size:23 final size:23
Alignment explanation
Indices: 323418--323479 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
323408 TCTCTAGTTG
323418 AGGGAGAGGGAACCTTTAGCGGC
1 AGGGAGAGGGAACCTTTAGCGGC
* *
323441 AGGGAGAGGAAACCTCTAGCGGC
1 AGGGAGAGGGAACCTTTAGCGGC
*
323464 AGGGA-AGGGAAACTTT
1 AGGGAGAGGGAACCTTT
323480 CCTTCCCTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 8 0.24
23 26 0.76
ACGTcount: A:0.31, C:0.16, G:0.40, T:0.13
Consensus pattern (23 bp):
AGGGAGAGGGAACCTTTAGCGGC
Left flanking sequence: Indices 322918 -- 323417
ATCAGCCCATTCCCCGGTACTTCCTTCCCTCTCTTCCCTAGGGTAGAGGAAACCCTCTCTTCCCT
AGGGTAGAGGAAACCCTCTCTTCCCTGGAACTCTCTTCCCTAGGGGAAAGAAACTCTCTTCTTTA
GCTAAGGGAAAGGACCTTCCCTTTCTTCCCTTCTTTCCCGGGAAAGGGGGGCTCCTGGCACAGAA
TAACTTGGCACTGGTGGAACCGAAACTGTTGGTGCCGAAAGTGTTGGAATTGCTATAGCTCTTGC
TTTCGGCCTTGTAGGCGATGTTTGGGTTGTGAAGTGCCTGACACGTGCGGGCCCGCCATCATCAA
TTGCTTGCTCCCGAAACAAGGCCTCTGTAGGGCTGGCGATGGGGCGATGCTGAGAGGCAGGGAAT
GAGAAGGAAACTCTCTTCCTTAGCTAGGGTGAAGGAAATTCCCTCTCTTCCCTAGGGTAGAGGAA
ACCCTATCTTCCCTGGGGTAAAGGAAACTCTCTCTTCTCTAGTTG
Right flanking sequence: Indices 323480 -- 323979
CCTTCCCTCGGGAAAGGAAACCCCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCTCCTTCCCTTC
TCTCTCTTCCCGCTGGGTAGAGCAAACTCCCCTCCAGCAGACAATCGGACGGTAATCAGACGGTA
AGACGAGAGATTGGACAATTAGACGAGAGGATGGGACGATAACTCCAAGAAGACGAGAGATACCT
CTCCCAGCGGGTAAAGGAAAGGGAAGGGGAGGCTTTCTCTTCCGGTGCTTGGGAACTGATTCAAC
GTCGACTGATAAGCACTGCTGATGGCAATTAGAACCGCTGTTGAGGACACTGGAATCAGCCCTTT
TAAGGGTTATGAAATTGTCGTGCACTGTAGAAATGGGTGCGCCCTTTTAATTCCTTCACGAGTTT
CCTAGTTAGGATTACATCCAAGACGTCCTGAATTCAACTAATTTTCAATTCATTGAAAATTCATT
GAATTTAGACGCTTTTAAGGGGTCAAAAAAGCAGGTTTAATTGAA
Done.