123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_060361
Parameters: 2 7 7 80 10 50 500
Length:  335042

Tables:   1   2   3   

This is table  3  of  3  ( 286 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277301--277443	20	7.6	20	81	9	169	13	16	37	32	1.88
277301--277442	54	2.5	57	93	6	263	14	15	37	33	1.87
282406--282461	5	11.2	5	92	0	94	21	35	19	23	1.96
283811--283861	20	2.6	20	93	3	86	11	31	25	31	1.92
285162--285217	17	3.0	20	79	15	82	35	37	17	8	1.82
285252--285295	16	2.8	16	96	0	79	34	31	22	11	1.90
286579--286614	14	2.6	14	95	0	63	5	25	22	47	1.73
287550--287578	14	2.1	14	100	0	58	41	27	24	6	1.80
287694--287743	20	2.5	20	100	0	100	20	14	30	36	1.91
290047--290102	17	3.0	20	79	15	82	8	17	37	35	1.82
293836--293918	40	2.1	40	100	0	166	13	30	25	31	1.93
298538--298566	14	2.1	14	100	0	58	48	13	31	6	1.69
298551--298641	19	4.5	19	77	20	103	36	21	32	8	1.85
298561--298666	44	2.3	46	81	13	132	35	23	32	8	1.85
298720--298870	58	2.8	54	85	12	222	24	20	25	29	1.99
301590--301668	37	2.1	37	97	0	149	26	21	34	17	1.96
302299--302446	41	3.4	41	84	13	206	24	24	26	25	2.00
302316--302648	54	6.6	51	90	7	388	22	23	25	28	1.99
302299--302493	90	2.2	90	92	1	320	23	24	26	26	2.00
302497--302530	16	2.1	16	88	0	50	11	23	26	38	1.89
302406--302649	54	4.6	54	95	2	426	21	24	24	29	1.99
302551--302584	16	2.1	16	88	0	50	11	23	26	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302672--302777	17	5.9	17	73	16	97	15	13	37	33	1.86
302691--302795	20	5.6	19	72	18	94	15	14	35	35	1.88
302667--302783	37	3.2	37	93	2	200	13	15	36	34	1.87
302862--302980	34	3.4	34	69	15	114	25	18	31	24	1.97
305299--305334	14	2.6	14	95	0	63	47	22	25	5	1.73
305353--305491	49	3.1	47	75	22	149	22	23	27	27	1.99
305374--305491	41	2.8	43	70	12	118	22	22	27	27	1.99
305469--305523	20	2.8	20	83	10	85	16	16	32	34	1.91
311021--311059	19	2.1	19	95	0	69	30	28	30	10	1.90
311176--311250	20	3.9	20	76	16	95	17	14	32	36	1.90
314704--314759	14	3.6	14	71	28	51	44	21	26	7	1.78
314772--314883	49	2.3	49	95	3	199	20	24	25	29	1.99
317789--317830	21	2.0	21	90	0	66	11	35	23	28	1.91
320912--320962	25	2.0	25	100	0	102	43	11	19	25	1.85
322108--322200	20	4.8	19	88	4	141	33	24	31	10	1.90
322108--322211	39	2.7	39	86	0	163	35	23	31	9	1.87
322340--322394	17	3.0	18	84	10	76	21	10	32	34	1.89
322338--322395	20	3.0	20	80	14	86	20	13	31	34	1.92
329841--329943	35	2.9	35	92	0	170	20	24	29	26	1.99
329953--330121	35	4.0	42	78	20	192	22	24	27	26	2.00
330035--330256	43	4.8	48	87	8	277	22	22	27	27	1.99
329862--330256	124	3.1	120	81	14	438	22	23	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330265--330335	17	4.3	16	72	13	63	16	14	35	33	1.89
330285--330329	17	2.6	17	92	0	72	22	8	37	31	1.85

Tables:   1   2   3

The End!