Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_060361
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 335042
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
File 3 of 3
Found at i:277326 original size:20 final size:20
Alignment explanation
Indices: 277301--277443 Score: 169
Period size: 20 Copynumber: 7.6 Consensus size: 20
277291 TTGAGTGATA
277301 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGC
* * *
277321 GAGTGCTTTGA---GTGAGA
1 GAGTGCTTTGACTTGCGTGC
277338 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGC
277358 GAGTGCTTTGA---GCGTGC
1 GAGTGCTTTGACTTGCGTGC
* * *
277375 GAGTGCTTTGA---GTGAGA
1 GAGTGCTTTGACTTGCGTGC
277392 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGC
277412 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGC
277432 GAGTGCTTTGAC
1 GAGTGCTTTGAC
277444 AGGAATGGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
17 45 0.43
20 60 0.57
ACGTcount: A:0.14, C:0.16, G:0.37, T:0.33
Consensus pattern (20 bp):
GAGTGCTTTGACTTGCGTGC
Left flanking sequence: Indices 276801 -- 277300
GATTTTTTGCCCAACTTGATGAGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAA
CCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCG
AGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGC
GAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCG
CGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAG
CGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTT
TGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATA
Right flanking sequence: Indices 277444 -- 277943
AGGAATGGAAGAATGAGAAAGGGGTTAGGTGAGAAGACCTAATGTCAACATTCAAGGATCCCGGG
GGGACCGTATAGGCTTTCTACCAGTGCTCTATTCATAGTCTCTATCTATCACTGACCGGTCTGGA
TCCTAGTAGTGTTGATGAAGGTAGGCTTGCATAGCACGCAGTAGGCGTCGTAGCAAGAGTTGTAG
GCTACACTCGCTGCTTTTCTGGGCGTAACAAGCTGGATATGGAAAAGAGGAAAGATTCCCCTCTC
TTTCACAACTCGGGCACCTGGTTGGCCCCTTTCTCTTTCCGCCTCTCACCTGTAGCAGGTCTGCC
ATGAGCAACAAGCCACATTCCAGAGTTGGCCCTCTGACATCCTATCGGCTTCCAGATCCTGTTCC
ATCGGAAAAAAGTCCCCAAGGGTCCTAACGGAGAAGGGAAGGCCCCACACTGGGATGTCTTGATC
CTGATCATCAGAGCATCCTATCGTCCACAAGGCGATCTTTCCTCT
Found at i:277347 original size:54 final size:57
Alignment explanation
Indices: 277301--277442 Score: 263
Period size: 54 Copynumber: 2.5 Consensus size: 57
277291 TTGAGTGATA
277301 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
277358 GAGTGCTTTGA---GCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
277412 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
277443 CAGGAATGGA
Statistics
Matches: 82, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
54 54 0.66
57 28 0.34
ACGTcount: A:0.14, C:0.15, G:0.37, T:0.33
Consensus pattern (57 bp):
GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
Left flanking sequence: Indices 276801 -- 277300
GATTTTTTGCCCAACTTGATGAGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAA
CCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCG
AGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGC
GAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCG
CGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAG
CGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTT
TGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATA
Right flanking sequence: Indices 277443 -- 277942
CAGGAATGGAAGAATGAGAAAGGGGTTAGGTGAGAAGACCTAATGTCAACATTCAAGGATCCCGG
GGGGACCGTATAGGCTTTCTACCAGTGCTCTATTCATAGTCTCTATCTATCACTGACCGGTCTGG
ATCCTAGTAGTGTTGATGAAGGTAGGCTTGCATAGCACGCAGTAGGCGTCGTAGCAAGAGTTGTA
GGCTACACTCGCTGCTTTTCTGGGCGTAACAAGCTGGATATGGAAAAGAGGAAAGATTCCCCTCT
CTTTCACAACTCGGGCACCTGGTTGGCCCCTTTCTCTTTCCGCCTCTCACCTGTAGCAGGTCTGC
CATGAGCAACAAGCCACATTCCAGAGTTGGCCCTCTGACATCCTATCGGCTTCCAGATCCTGTTC
CATCGGAAAAAAGTCCCCAAGGGTCCTAACGGAGAAGGGAAGGCCCCACACTGGGATGTCTTGAT
CCTGATCATCAGAGCATCCTATCGTCCACAAGGCGATCTTTCCTC
Found at i:282421 original size:5 final size:5
Alignment explanation
Indices: 282406--282461 Score: 94
Period size: 5 Copynumber: 11.2 Consensus size: 5
282396 TTCGTACCTA
* *
282406 ACGTC ATGTC ACGTC ATGTC ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC
1 ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC
282456 ACGTC A
1 ACGTC A
282462 ATTGATGAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (5 bp):
ACGTC
Left flanking sequence: Indices 281906 -- 282405
AATCCGCATTCTTCCAGCCCTGTTTTCCACATTGGAACCGCAGGTATAGACCAATCCGAAAATCA
TTGGATTGGAGATTCGCACTCCGGAACTGCTCCCAACGATTCGGAAGGGGATAGGGTCAAAGAAG
CATCTATTTCCGCAAGTGAGGGGGGTCGCGGCGGCGGATCGGCGGATGTTGGATCAAAATCGGCT
GCGAGAAAATGATAGTATAATACCGATAGCAAGTTTTCGGTATTGCGTCAGGTCAGTATAGAGGC
GCTCCTACCTTTACCCATCCCATTTCCACTCGGTGGATCATGGATCGACTGGATCAACTTGGTCA
TTTGCTGGTGTCCCTACCCCTCCTTTTCTTGAATTGAGAAAGAAAAGATCTGTGCCGGGACGGGA
TCAACGGATCTATGTAGGGGGCGCTGAATACCGCTCCAAAGCTTGGTAAACGACTCGCTGCTTTC
TTTCGTGGGGCCGTACCTCATTTTTCGCTATTGCATTCGTACCTA
Right flanking sequence: Indices 282462 -- 282961
ATTGATGAGCCCCCAACTTTCTGTCGGGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAG
CCCAACTATAATAGAAAGTCCTCTTGCGAGTGCTTTGAGCGATAGAGTTCTTTTCACGCTTTGCG
AGTGCTTTGTGCAAAGCACTAAGACTTCGCTTTGCGAGTGCTTTGTGGGCTTTGCTCGTAGGGCT
GGGCACGCACCGAATGGAGAAGCTTTTCACCCAAACAGGTCATTAGTCGGCCTGAGCTCACGGGC
CCGCCCCCTATTTATTCATCTTAATGAAACAATGAAGACGGTCAAATTCCGAAGGTTTTAATGGG
ACAAATAATCGAGAATGTTTTGCGTAATGATTCGGAAAATTCCTTGGTGGTTAGTACGGAATTGT
ATGAGCTGCTCCTGCACTTCTTGCTGGGAAGAGATTGCAATAAGC
Found at i:283849 original size:20 final size:20
Alignment explanation
Indices: 283811--283861 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
283801 GTTGAGCTTT
283811 CTTTGCTCCCG-ACGTTGAG
1 CTTTGCTCCCGAACGTTGAG
*
283830 CTTTGCTCCCGAAGGTTGAG
1 CTTTGCTCCCGAACGTTGAG
283850 CTTTGCTCCCGA
1 CTTTGCTCCCGA
283862 CCCTTCTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.12, C:0.31, G:0.25, T:0.31
Consensus pattern (20 bp):
CTTTGCTCCCGAACGTTGAG
Left flanking sequence: Indices 283311 -- 283810
TTGGACACATTTATCCGGAAACGGGGCCCACTCACTCTAGTATAGCTCCGGAGGGTGGGGCGTGA
CTCTTAAGCGGGCGGGCAATCACGGACGCTAAACCATGGCCAACTGCTAGCGGTGATATGATAGT
CGCCAGCAGGAACTACACCCAAGGCTTGGCTTGTATTCCGACGCGGAAGAAACTCCGGGCACGAG
GCACGTTGGAAGTTCATGGTACTTCCTACATAAGCCGTGATTCTCGGATTAGACACAGACACAAA
AGGCGAACGAGGTTCTTAGCCTTTCCCTGAAAGAAGGGTGACGATGCTGGTCCTTCGATTCTATT
CCAATTTCATGGAGTAAGATTTTTTCCGGAATGGTTGTCATCAAAGCACTCGCAAAGCGAAACAA
GAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGAATCGTAAAAACACTCGCACGCGATGCTTTG
CATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTT
Right flanking sequence: Indices 283862 -- 284361
CCCTTCTCATCAAGTTGGGGGCTTTGCTCGTGACGTGACGTGACGTGACGTTGATCAAAGCACTC
GCTTTTCATTGCGTCAGGGCTTTGCTCGAACCTCATTGTTTGAACTATTTACGACGTTTCCTGGG
GAGTCGGCATCCATTATGTGGAAGTTGGGTCACATCGTGGATGTACATAATGTTAGATGGCTGTC
CTACTCCTTCACTTCGCTTACACTCCGAAAAGGTATAACCTTCTCTCCAGCTCAAGATCACTGCT
TTCTTTTTCCTGAAATAAGTGGATCCTTTCACTTTCATTACAACCGACTTCATCCCCATCTTTCT
GGCGGATCGCCCGACATGTTCTGCAGTTGCTTCAGCAGCATACCGAGAAAGACGAGACCCCCCTT
TGATTTCCTCCAAACAACCTGCGGAGGCCCCAGTTTTTTTATTCCCCCTAGCATCCGTCACGGTA
ACAAAGGTATTGTTGTGGATCGGTGAGAAATGGACAAAATCTTGG
Found at i:285185 original size:20 final size:20
Alignment explanation
Indices: 285162--285217 Score: 82
Period size: 17 Copynumber: 3.0 Consensus size: 20
285152 TTTGCTCGTA
285162 CAAAGCACTCGCACGCAAGT
1 CAAAGCACTCGCACGCAAGT
*
285182 CAAAGCACTCGCA--C-ACT
1 CAAAGCACTCGCACGCAAGT
285199 CAAAGCACTCGCACGCAAG
1 CAAAGCACTCGCACGCAAG
285218 AGAGCTTTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 15 0.48
18 1 0.03
19 1 0.03
20 14 0.45
ACGTcount: A:0.36, C:0.38, G:0.18, T:0.09
Consensus pattern (20 bp):
CAAAGCACTCGCACGCAAGT
Left flanking sequence: Indices 284662 -- 285161
TAAACTCATCTACAGCTCATTCGGTTCTCAAATGATTGAATAAGAAAGACTGTTTCCAAAGCTCT
TGGCCGAGCTCGCACTGTCTAAGTGCTAGCCCGCCCTTTTCAAAAATTCCCATAAAGAATGTTGG
AGCCACTACCCCCTGGATTTGATAATCAATGGAGTCTCTAATCATCACGCTTAGTCATCGAGTCA
TAACGCTTCTCTCTTTTCTAAACGAAACCCTAGCATCTAACGCTTAGAGAGTGTTGCCTGCGAGC
GAAGTTGACTACGACGCCTAACCTAAAAGCGAGTGTAGACTCTGAGCCTACTGCGTGCTATGCAA
GCTGTAACTGCAAGCAGGATACAACGTCCATACGTCAGGTACATGTGCTATGCTATGTCGAAAGC
GGTACAAAGCACTCGCAAAGCGAAGCATTAGTGCTTTGCACAAAGCACGCACTCTATACGCAAAG
CGAATCGAAAAAGCACTCGCACACTCAAAGGGGCTTTTGCTCGTA
Right flanking sequence: Indices 285218 -- 285717
AGAGCTTTGCTCATTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCGCTCGCAAGTC
AAAGCACTCGCAATATACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACG
TTTCACTTTGCTCGCGACCCTTCCGTTGAGCTTTGCTCGCGACCCTCCCGACCCTTCCGAATAAC
TGGGCTTTGCTCGTATCAAGTGGTTGCTCGTGACGTGACGTTTGGTTGCTTTCAAACGGAGTAAA
CAGTAAGCGTAGTTTGATAATAACTGCGTGCGAAGCAAGCCTACATAGGTTGGCTCCCGACCTTC
CTTGTTGGAAAGAAACCAGTTGGTGCTTGATTTTGGAGGAAAACCCGGCATGCCGCAAAGGGGCT
GACTCTGATTCTCGATTACCGTGCCGCCTGGTTTGCGTTGCTCGGCCAAAAGAAGAAGAAATGTG
CTGTGGTGGGAGCGTCCTTACTTCACTTAAGTGGTAGCAGACCTC
Found at i:285271 original size:16 final size:16
Alignment explanation
Indices: 285252--285295 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
285242 CATTAAGTTC
285252 AAGCGCTCGCAAGTCA
1 AAGCGCTCGCAAGTCA
285268 AAGCGCTCGCAAGTCA
1 AAGCGCTCGCAAGTCA
*
285284 AAGCACTCGCAA
1 AAGCGCTCGCAA
285296 TATACGCGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.11
Consensus pattern (16 bp):
AAGCGCTCGCAAGTCA
Left flanking sequence: Indices 284752 -- 285251
CTAGCCCGCCCTTTTCAAAAATTCCCATAAAGAATGTTGGAGCCACTACCCCCTGGATTTGATAA
TCAATGGAGTCTCTAATCATCACGCTTAGTCATCGAGTCATAACGCTTCTCTCTTTTCTAAACGA
AACCCTAGCATCTAACGCTTAGAGAGTGTTGCCTGCGAGCGAAGTTGACTACGACGCCTAACCTA
AAAGCGAGTGTAGACTCTGAGCCTACTGCGTGCTATGCAAGCTGTAACTGCAAGCAGGATACAAC
GTCCATACGTCAGGTACATGTGCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAG
CATTAGTGCTTTGCACAAAGCACGCACTCTATACGCAAAGCGAATCGAAAAAGCACTCGCACACT
CAAAGGGGCTTTTGCTCGTACAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCAC
TCGCACGCAAGAGAGCTTTGCTCATTTGGGCTTTGCATTAAGTTC
Right flanking sequence: Indices 285296 -- 285795
TATACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTC
GCGACCCTTCCGTTGAGCTTTGCTCGCGACCCTCCCGACCCTTCCGAATAACTGGGCTTTGCTCG
TATCAAGTGGTTGCTCGTGACGTGACGTTTGGTTGCTTTCAAACGGAGTAAACAGTAAGCGTAGT
TTGATAATAACTGCGTGCGAAGCAAGCCTACATAGGTTGGCTCCCGACCTTCCTTGTTGGAAAGA
AACCAGTTGGTGCTTGATTTTGGAGGAAAACCCGGCATGCCGCAAAGGGGCTGACTCTGATTCTC
GATTACCGTGCCGCCTGGTTTGCGTTGCTCGGCCAAAAGAAGAAGAAATGTGCTGTGGTGGGAGC
GTCCTTACTTCACTTAAGTGGTAGCAGACCTCTTGTCTTCTGTGATAGAGCAACCAACCCGTGCT
GCAGGGATGGGAGGATGGAGTGGAAGTGAAGTGGGAGGAAGGGAA
Found at i:286596 original size:14 final size:14
Alignment explanation
Indices: 286579--286614 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
286569 CGACGTTTCA
*
286579 CTTTGCTCGTTTAG
1 CTTTGCTCGTTGAG
286593 CTTTGCTCGTTGAG
1 CTTTGCTCGTTGAG
286607 CTTTGCTC
1 CTTTGCTC
286615 CCGACCCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.25, G:0.22, T:0.47
Consensus pattern (14 bp):
CTTTGCTCGTTGAG
Left flanking sequence: Indices 286079 -- 286578
GGCTTATCTATGTGATTCGCTACGCTTGCTTTCGCCTATCGGCGGACTCTATTGCCTGCCTCTAT
TGGTTAGCGACACTTTTTTCCTATTGGTATGTTGGGGTACTTGCTACGCTTCGCTTGTTTCTATA
TGATAATATGCACCTTGGTCTCTGTGCTCCCTGCGGGCAATGGTTTAGCAAGAGAGTGAAGAACG
AACGATCCTCCGAGTGATGGAGTCCGACTCAAGCGAGTGAGTGAAAGGGGCGTGGCAAGAGAGTG
AGTTCGACTCGCGAACGATCAGCAAGTGATCAAAGCACTCGCAAAGCGTAGGGCTTTGCACAAAG
CACGCACTCGCAAAGCGTGAAAAGCACTCGCAATATCACGCTCAAAGCACTCGCACGCAAGAGAG
CTTTGCTCGTTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGC
TTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCA
Right flanking sequence: Indices 286615 -- 287114
CCGACCCTTCTCATCAAGTTGGAGCAAATAATCGAGAATGTTTTTTCGTGGTCCGTTTTGCAGCA
GTCAGACAAAATTCCCGATTCTACCGATCGTAGGAATAGAGTTTGAACAGTCAGAAGGCCTATCC
GCAGCCATCACTCGTACTACTCACTGCGCTCGCTATAGTCCATTAGTCGGTATACAGTCAAATAC
CTCCCCTTACTCCGTACCCAGCTTGAGTGTGATAGTCCGTATCCGTACACGGAGCAGGCAATAGA
GTAGTCACAGGCATTGCTCGTATCCCTGAAGTGAGGTTTGTTTCTCGTACTCTTGTAGGCTCGTT
CCGACTCTTCGTCTACACTCGTAGCTCGCAGTAGGAAAGAGTGGTCTAGTCCGTTCTGTACACCG
CCCGCAGTCAGAAAGAGTGTTCTATAATCCACCTTCGTGGAAGTCGAGTCTCAATTCCCTCCTGC
CGTGCCGTACACCAAGCAGTAGAGTATACTCTCCTATTTTCCTTG
Found at i:287569 original size:14 final size:14
Alignment explanation
Indices: 287550--287578 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
287540 GAAGGGTCGG
287550 GAGCAAAGCTCAAC
1 GAGCAAAGCTCAAC
287564 GAGCAAAGCTCAAC
1 GAGCAAAGCTCAAC
287578 G
1 G
287579 TCGCGAGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.28, G:0.24, T:0.07
Consensus pattern (14 bp):
GAGCAAAGCTCAAC
Left flanking sequence: Indices 287050 -- 287549
GAGTCTCAATTCCCTCCTGCCGTGCCGTACACCAAGCAGTAGAGTATACTCTCCTATTTTCCTTG
CCCGAGCAGTTAACTACGTGGAAGTACGTGAGGCGACTGACCGAACAGAAAGCCAGTTCCGGCTT
GCTCCGCATAGGCTACTCGGAAAATTCTTGGCCAGCCGTCTCTCTCCTCTGGCTCCTTACCCGCC
CATTCTTGATGTCGGAAGAAGGATAAAAATAGGGGGAACAGGCCCAGCTGGAGCTTTCGGATGAC
AACTCCGTAGGAGGGGGGAAAGAATGGGAACTGGAAGCCTACTTACTTTGATTCAAAATTCGGTC
TCATACTCCAAAAAAGGAAGCAACAACCTAACGTCACGTTATTAGCAAAGCCCAAAACTCGCAAA
GTGAACCGAAGCCCTCGCTTTTCATTGCGTGTCACGTCACGTCACGTCAATTGATGGAAGGGTCG
GGAGCAAAGCTCAACGTCGGGAGCAAAGCTAAACAGAAGGGTCGG
Right flanking sequence: Indices 287579 -- 288078
TCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTAGAGCGTT
TCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTT
GCGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCTTTGACGCCCGCT
AATAAAGGTTGTTGTTGTTTCGTTTTTTCTAGACACTATAAGCTCAAAGACTAGACGACTAGTTG
AGGCATTCGGGAGACTGACGTTAGTTAGTATAGAACAGAGGCATGATGGGCCGACTACTACGACT
ACATGCGCATCTAGTGCAGTGGCTTGGAAGCCGTAAGGCTCCCTTGACCATCTTCCGAAGTGAAT
CTACTGATCAAACGCTGTAGGAGCGGACTGCTCTACATTCAGCCACGCCACAGTGACCCCCGAAA
CGCGACGGACGGGACGAAAGAAGGCAGCCAATTGCAGGCTCTGAA
Found at i:287719 original size:20 final size:20
Alignment explanation
Indices: 287694--287743 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
287684 TTTGAGTGAG
287694 AGAGTGCTTTGACTTGCGAT
1 AGAGTGCTTTGACTTGCGAT
287714 AGAGTGCTTTGACTTGCGAT
1 AGAGTGCTTTGACTTGCGAT
287734 AGAGTGCTTT
1 AGAGTGCTTT
287744 TCACGCTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (20 bp):
AGAGTGCTTTGACTTGCGAT
Left flanking sequence: Indices 287194 -- 287693
ACTCGGAAAATTCTTGGCCAGCCGTCTCTCTCCTCTGGCTCCTTACCCGCCCATTCTTGATGTCG
GAAGAAGGATAAAAATAGGGGGAACAGGCCCAGCTGGAGCTTTCGGATGACAACTCCGTAGGAGG
GGGGAAAGAATGGGAACTGGAAGCCTACTTACTTTGATTCAAAATTCGGTCTCATACTCCAAAAA
AGGAAGCAACAACCTAACGTCACGTTATTAGCAAAGCCCAAAACTCGCAAAGTGAACCGAAGCCC
TCGCTTTTCATTGCGTGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAA
CGTCGGGAGCAAAGCTAAACAGAAGGGTCGGGAGCAAAGCTCAACGAGCAAAGCTCAACGTCGCG
AGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTAGAGCGTTTCACT
TTGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGAG
Right flanking sequence: Indices 287744 -- 288243
TCACGCTTTGCGAGTGCTTTGACGCCCGCTAATAAAGGTTGTTGTTGTTTCGTTTTTTCTAGACA
CTATAAGCTCAAAGACTAGACGACTAGTTGAGGCATTCGGGAGACTGACGTTAGTTAGTATAGAA
CAGAGGCATGATGGGCCGACTACTACGACTACATGCGCATCTAGTGCAGTGGCTTGGAAGCCGTA
AGGCTCCCTTGACCATCTTCCGAAGTGAATCTACTGATCAAACGCTGTAGGAGCGGACTGCTCTA
CATTCAGCCACGCCACAGTGACCCCCGAAACGCGACGGACGGGACGAAAGAAGGCAGCCAATTGC
AGGCTCTGAATAACCTGCCAAGCAAGAAGCCCAATTCTTCCATAACGGGGCGGGGTTGCGCGCGA
GCCGAGTTACGTAGGTGCACAAGATCGCGTCACAACCATCTCTTTTTTATGGGTTCTACGGCCCG
ATGCCTGCTGCTTCATCTGGGAGAAAAGCAGAAGAGATATGCCGG
Found at i:290094 original size:20 final size:20
Alignment explanation
Indices: 290047--290102 Score: 82
Period size: 17 Copynumber: 3.0 Consensus size: 20
290037 GCAAAGCTCT
290047 CTTGCGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGA
*
290067 ---GTGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGA
290084 CTTGCGTGCGAGTGCTTTG
1 CTTGCGTGCGAGTGCTTTG
290103 TACGAGCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 16 0.52
20 15 0.48
ACGTcount: A:0.09, C:0.18, G:0.38, T:0.36
Consensus pattern (20 bp):
CTTGCGTGCGAGTGCTTTGA
Left flanking sequence: Indices 289547 -- 290046
TCCATAAAAACTTGGGATCCGACACCATGATAAAATACTACCCTCATGATTAGACCATGTCCCTG
AAATTTGATAAAAGAAGGGTGCATTAGCGGTTAATACGTTGTAATTTGAGAAGTTATTTGGAATA
TGACGGAACGAAGGACCAAGGAAAGGAAGAAGAATGCACCCAAATGCGGGTTCAGCACCAAACGC
TAGTGGTTGTTTCTTGTTGGTTGTGAATGCAACGAAAAGACCCGGAAATAACGAATAATGAGACA
ATGAATTTATTGACATTTCGTGCTCATTTCCCTCTGCCTTGTTATTCCCATCATCCGGTAACCAC
AGGATGATCCACAAGAAAGGTGGCAGGATTCGAACCTCTGGCCGGCCTGCCCCTGCCCTGCTGGG
TGGAGTTGAGTGGCCGGGTTAGCACCCCTCGTCGCCTCCGTACCCGAAACTGATGCGCTGCGCTA
CCCAGCGCGTAACCTTGTCTCCCCCAACTTTTTGAGCAAAGCTCT
Right flanking sequence: Indices 290103 -- 290602
TACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCCTTTGCGTATAGAGTGCGTGC
TTTGTAGGGTCACTGTAATAATAAGAAAAGGACCGGAGGATCGGAGACTAATGGTCTAATCATGA
TGGGAGTAGTCGCAACGGCGGGCGGTATCCCACATGCCAGTAATGCTATCCAAGGTTTGACCGTT
AGGGTCATCGATGTGTCCCTTATTATATATACGTTTTCTCAACATATACGACATTTCACGCTGAC
GTGACCGGATAGGCGCTTTCAATTAGCGATACTGCCCTCTCACCGATGCGCTTAGCAACTTGACA
AGGGCTTGCTCCTTCTAAGATAATAGGATGAAACGATGCTCAACCAGCGCAGGGTCCAACCCTGG
CATGTCGCTATAGGACTAGGCGAAAAGAAAGATGTCTTTCTTTGTCAATTCATTCTTTCTTGTTC
TACTGGTGTGAATGACGCGCTAGCTCTTTCTTCGTTCTTCTGGTT
Found at i:293891 original size:40 final size:40
Alignment explanation
Indices: 293836--293918 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
293826 CACGTCACGA
293836 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
1 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
293876 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
1 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
293916 GCA
1 GCA
293919 TAAACAATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.13, C:0.30, G:0.25, T:0.31
Consensus pattern (40 bp):
GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
Left flanking sequence: Indices 293336 -- 293835
TCTCTTCATAATCCCTATTCAAATTGCTTGCTTGACTTCTGAAGGTGGCTTTCAGTTCCAGTAAC
TGTGGCTCTTGCTTGAGCCGGGAAGTAGAGAAGGCACAGAGGTGAGTTCCGTATACGAAGGTACG
AAAAAAGGACAGGTTTCCAGTAAGGCGAGTCAGAGAAGGTTAGAGATAACCGTTGCTTTGACATG
ACAAAAGAGAACGGTTTGCCTTTTCATTATACGAATAAAGTGAAAGAGATATACGTGAAATTCCT
CCTTTCTTCCAATGGCCAATGAACCACTTCACTGACTTAAGGAAAGTCATACCGGCTTGAACAGC
ACTATCAAAGCAAATAGATAGAGTACGAGACAGAACTAAATAGGTGACGAGTGCGGAGTAGCGAA
GGGGCTTTGAGGCTTTGCTGACGAAGCGAAGGTACGAAGTGGATTTCTCATGGCCCTCCCAATGC
AGTGCAGAATTTTGTTGCTATACGTCACGTCAGGTCACGTCACGA
Right flanking sequence: Indices 293919 -- 294418
TAAACAATAACCATTTATAATACCTGCTTGCTGGTCGTACGAGATTGAAAAAGATTTGCAATTGC
AGTGGAAACTAAGAAATGCATGAACCACCTTGATGGCGAGAGCTAACAACCGTCCTATTCAAAGA
CGCAATCACCGCTTTAATCATGTGTTTACCGTACTCACGTACCGAGATTCCATCACTATAACCTT
CCGTACCTTTAAAGAGAAAGTGTCTTTGATGCCATGAAATGGCATCAAAGAAACTTTCCATGAAA
ATGACTGTCAGTACCGCTCATTAAACAACGAGTCAACGTAGCCCAGTGGATCGATTTGATCGAGA
CCAACCTGCTCTGAGCCAAGACGAACGAATGTCAATCGATGATCGACTATGCTTTTAGAGATAGC
AGTTGAGCAGAGCAGAAGCAGTCGGTTTGTTTGAAGGGAAGGTAGAAAGCTGAGAAGCGCTAGCA
ATAGCGCGCGGCAATAAAGCAGAGTTAGCGAGAGGAGGGCGGTGG
Found at i:298557 original size:14 final size:14
Alignment explanation
Indices: 298538--298566 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
298528 GGAGGGTCGG
298538 GAGCAAAGTGAAAC
1 GAGCAAAGTGAAAC
298552 GAGCAAAGTGAAAC
1 GAGCAAAGTGAAAC
298566 G
1 G
298567 TCGCGAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.31, T:0.07
Consensus pattern (14 bp):
GAGCAAAGTGAAAC
Left flanking sequence: Indices 298038 -- 298537
AGCTTTCGAAATCGAAAGAAAGACAGCGATCTATGTCGGAGCTTGATTCATTGGTCAATTTGGTC
CAGTCTATCCTTTGTCATTCCAATTGGTCTACCGTAACTCCGGGGCAAGACTGGACAATTCCACT
CGAGACGCGATCGGTCTTCATTCCTCTTTTTGCTTTTTCCAAAACCTTTCCGGAATGGAATGCAT
AGGGCCCTTATAACTGACCTTTTTCTTTCCAGTCAGGGGCGAGGGAGTTGTACGAGAAGCGATCG
GAATGCCCTAAAGCGAGTGACCGAAAAGGGTTTCGAGTGGAAGCTCGCACCTCCCCGCCCCGCCC
AGGTGATACCGCGCACCCATGTAGGCTTGCTCCGCAGTTTTTATCAAAGCTGACGTCATTTTCAT
TTTGAAGCAACCATCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATACGAGCAAAGCCC
AAACGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGGAGGGTCGG
Right flanking sequence: Indices 298567 -- 299066
TCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACGGAAGGGTCGCGAGCAAAGTGAAACGTC
GCGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGC
GCTTGAACTTAATGCAAAGCCTCGCGTATATATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
CTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTTCACGCTTT
GCGAGTGCTTTGTGGGCTTTGCTAATCTCGTTGCTTCGCTTTGCGAGTGCTTTGACGACATAGCG
CATGTCACAGTTGGGGGTACTCTTTTTTTCATCCTAAGAGGCTACACTCACTGGTGTCACTTGAC
TATGGTGTCACATATGTAGTTACGCGTCACTTTATAGATAGGAGT
Found at i:298648 original size:19 final size:19
Alignment explanation
Indices: 298551--298641 Score: 103
Period size: 19 Copynumber: 4.5 Consensus size: 19
298541 CAAAGTGAAA
298551 CGAGCAAAGTGAAACGTCG
1 CGAGCAAAGTGAAACGTCG
*
298570 CGAGCAAAGCT-CAACGTCG
1 CGAGCAAAG-TGAAACGTCG
298589 CGAGCAAAGTGAAACGGAAGGGTCG
1 CGAGCAAAGTGAAAC------GTCG
298614 CGAGCAAAGTGAAACGTCG
1 CGAGCAAAGTGAAACGTCG
298633 CGAGCAAAG
1 CGAGCAAAG
298642 CTAAACGAGC
Statistics
Matches: 62, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
18 1 0.02
19 41 0.66
20 1 0.02
25 19 0.31
ACGTcount: A:0.36, C:0.22, G:0.33, T:0.09
Consensus pattern (19 bp):
CGAGCAAAGTGAAACGTCG
Left flanking sequence: Indices 298051 -- 298550
GAAAGAAAGACAGCGATCTATGTCGGAGCTTGATTCATTGGTCAATTTGGTCCAGTCTATCCTTT
GTCATTCCAATTGGTCTACCGTAACTCCGGGGCAAGACTGGACAATTCCACTCGAGACGCGATCG
GTCTTCATTCCTCTTTTTGCTTTTTCCAAAACCTTTCCGGAATGGAATGCATAGGGCCCTTATAA
CTGACCTTTTTCTTTCCAGTCAGGGGCGAGGGAGTTGTACGAGAAGCGATCGGAATGCCCTAAAG
CGAGTGACCGAAAAGGGTTTCGAGTGGAAGCTCGCACCTCCCCGCCCCGCCCAGGTGATACCGCG
CACCCATGTAGGCTTGCTCCGCAGTTTTTATCAAAGCTGACGTCATTTTCATTTTGAAGCAACCA
TCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATACGAGCAAAGCCCAAACGGAAGGGTC
GCGAGCAAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAA
Right flanking sequence: Indices 298642 -- 299141
CTAAACGAGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
TGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
AATGCAAAGCCTCGCGTATATATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAA
AGCATCGCGTATATTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTTCACGCTTTGCGAGTGCTT
TGTGGGCTTTGCTAATCTCGTTGCTTCGCTTTGCGAGTGCTTTGACGACATAGCGCATGTCACAG
TTGGGGGTACTCTTTTTTTCATCCTAAGAGGCTACACTCACTGGTGTCACTTGACTATGGTGTCA
CATATGTAGTTACGCGTCACTTTATAGATAGGAGTCAAAAGGGTGTGACTGTTGTCTCCTAAAAA
AAGGAAAACATCGACGTCTGACATATGTCAACAAAGACTAAAAAA
Found at i:298648 original size:44 final size:46
Alignment explanation
Indices: 298561--298666 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 46
298551 CGAGCAAAGT
*
298561 GAAA-CGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACG-
1 GAAAGCGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAACGA
*
298605 G-AAGGGTCGCGAGCAAAG-TGAAACGTCGCGAGCAAAGCT-AAACGA
1 GAAAGCGTCGCGAGCAAAGCT-AAACGTCGCGAGCAAAG-TGAAACGA
298650 GCAAAGCGTCGCGAGCA
1 G-AAAGCGTCGCGAGCA
298667 CTCTTGCGAG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
43 3 0.06
44 35 0.66
45 2 0.04
47 13 0.25
ACGTcount: A:0.36, C:0.24, G:0.32, T:0.08
Consensus pattern (46 bp):
GAAAGCGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAACGA
Left flanking sequence: Indices 298061 -- 298560
CAGCGATCTATGTCGGAGCTTGATTCATTGGTCAATTTGGTCCAGTCTATCCTTTGTCATTCCAA
TTGGTCTACCGTAACTCCGGGGCAAGACTGGACAATTCCACTCGAGACGCGATCGGTCTTCATTC
CTCTTTTTGCTTTTTCCAAAACCTTTCCGGAATGGAATGCATAGGGCCCTTATAACTGACCTTTT
TCTTTCCAGTCAGGGGCGAGGGAGTTGTACGAGAAGCGATCGGAATGCCCTAAAGCGAGTGACCG
AAAAGGGTTTCGAGTGGAAGCTCGCACCTCCCCGCCCCGCCCAGGTGATACCGCGCACCCATGTA
GGCTTGCTCCGCAGTTTTTATCAAAGCTGACGTCATTTTCATTTTGAAGCAACCATCACGTCACG
TCACGTCAATTGATGAGCAACCACTTGATACGAGCAAAGCCCAAACGGAAGGGTCGCGAGCAAAG
CTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGAGCAAAGT
Right flanking sequence: Indices 298667 -- 299166
CTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAG
CATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATATAT
TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
TGACTTGCGTGCGAGTGCTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTAATCTCGTTGCT
TCGCTTTGCGAGTGCTTTGACGACATAGCGCATGTCACAGTTGGGGGTACTCTTTTTTTCATCCT
AAGAGGCTACACTCACTGGTGTCACTTGACTATGGTGTCACATATGTAGTTACGCGTCACTTTAT
AGATAGGAGTCAAAAGGGTGTGACTGTTGTCTCCTAAAAAAAGGAAAACATCGACGTCTGACATA
TGTCAACAAAGACTAAAAAAAGGCGTCTGACCTTATTTAATGACC
Found at i:298876 original size:58 final size:54
Alignment explanation
Indices: 298720--298870 Score: 222
Period size: 58 Copynumber: 2.8 Consensus size: 54
298710 CTTGCGAGCG
298720 CTTAATGCAAAGCATCGCG-ATA----GAGTGCTTTGACTTGCGAGCGCTTGAA
1 CTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
*
298769 CTTAATGCAAAGCCTCGCGTATATATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
1 CTTAATGCAAAGCATCGCG----TATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
298827 CTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCG
1 CTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCG
298871 TGCGAGTGCT
Statistics
Matches: 91, Mismatches: 2, Indels: 13
0.86 0.02 0.12
Matches are distributed among these distances:
49 18 0.20
54 28 0.31
58 45 0.49
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (54 bp):
CTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
Left flanking sequence: Indices 298220 -- 298719
GAATGGAATGCATAGGGCCCTTATAACTGACCTTTTTCTTTCCAGTCAGGGGCGAGGGAGTTGTA
CGAGAAGCGATCGGAATGCCCTAAAGCGAGTGACCGAAAAGGGTTTCGAGTGGAAGCTCGCACCT
CCCCGCCCCGCCCAGGTGATACCGCGCACCCATGTAGGCTTGCTCCGCAGTTTTTATCAAAGCTG
ACGTCATTTTCATTTTGAAGCAACCATCACGTCACGTCACGTCAATTGATGAGCAACCACTTGAT
ACGAGCAAAGCCCAAACGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAA
GTGAAACGAGCAAAGTGAAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACGGAAGG
GTCGCGAGCAAAGTGAAACGTCGCGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCACTCTTGCG
AGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
Right flanking sequence: Indices 298871 -- 299370
TGCGAGTGCTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTAATCTCGTTGCTTCGCTTTGC
GAGTGCTTTGACGACATAGCGCATGTCACAGTTGGGGGTACTCTTTTTTTCATCCTAAGAGGCTA
CACTCACTGGTGTCACTTGACTATGGTGTCACATATGTAGTTACGCGTCACTTTATAGATAGGAG
TCAAAAGGGTGTGACTGTTGTCTCCTAAAAAAAGGAAAACATCGACGTCTGACATATGTCAACAA
AGACTAAAAAAAGGCGTCTGACCTTATTTAATGACCTTACATAAGGTTCCTTCTCGTTGCTCCCG
TTCTGACATGTTATATGCAACTATTGAACAGACAAGACTAAAAGGGATGACTTGAAAGTTCAAAG
ACATTGAAAGGTGGTTGTCCGTTTTCAAAACGAACAGACGGAAAAAAAAAGGGGCTTGAACAGAC
AAGACAGGAAAGCAAAGCACTTGTAGGCGTCGTAGCAGAAGCACT
Found at i:301632 original size:37 final size:37
Alignment explanation
Indices: 301590--301668 Score: 149
Period size: 37 Copynumber: 2.1 Consensus size: 37
301580 TCGCTCCGCG
301590 TAGGCTGCACTCGTAGTGGAGCAAGGGCTACACAAGT
1 TAGGCTGCACTCGTAGTGGAGCAAGGGCTACACAAGT
301627 TAGGCTGCACTCGTAGTGGAGCAAGGGCTACACAAGT
1 TAGGCTGCACTCGTAGTGGAGCAAGGGCTACACAAGT
*
301664 GAGGC
1 TAGGC
301669 GTCCCTCGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.34, T:0.18
Consensus pattern (37 bp):
TAGGCTGCACTCGTAGTGGAGCAAGGGCTACACAAGT
Left flanking sequence: Indices 301090 -- 301589
CGCCCTAGTTGATGGCATTCCCCTCTGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACAG
AGCAAGCAAGGCTGCAGGATGAGACGCCCGCGCAAGGACCTAAATTCTCATTAGGAGGTCGAACC
AAGGACCTATGGAAGTCGGGGCTACCCCGTCCCCATGGCAACGCTACACTGTCCTGAGGGAGGAG
TTCAGAGGCCTTATAGTAGCACGGACCTCTTTGACGGTCATGCGAAGGGGGCCAGTCCAAGATCG
TACTGTTCCTCTATCTAATAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTAGTTAT
CCAGTTCTTCACTTCATTCTTTTGTGCCGCGGTGAACGACCAGGCCTAGGACCTGAAACGGAAGA
AACGGCAGATACTACGGACCCTCTTCTTGTTCCTAGCCGTCCGTTACGAGTCCGGGAAGCCTGTT
TCGGCTTGCTCCGCACAGACTACACATGTGGAGGCTCGCTCCGCG
Right flanking sequence: Indices 301669 -- 302168
GTCCCTCGCAACAATGGCGTAACTCGCTGCTATGCCAGGTAGAAGCGAAGGGATTGGATTTCACG
ATCAGATCCGTGGGCAACCATAGTGTACCTTTTTCGTGGTGTTGTTGTTGACTTGAAAGCGAATG
ATTGAGTAGGCCTAGCTTTTCGGAGCTGCTCCCAGCTCACACTATGGTGGAGGAGGTGCCGTGAA
GATCTAGGAGTGTGAGCAGTACGAGCTGAAAGGCTCCCATACTGTTTGGAGGGCAGGGGGCATAG
ATGCCAAACCTGACCCCTATCTATCGTCGTAGAAGCTGTTCCTTTGAAAGATTATGTTTATCGGG
TATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCTACGATAGTAGGGTGAGGAAAGCTA
CTAAATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGT
CTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGGTG
Found at i:302344 original size:41 final size:41
Alignment explanation
Indices: 302299--302446 Score: 206
Period size: 41 Copynumber: 3.4 Consensus size: 41
302289 GAGCGCTTTG
302299 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAA
302340 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGC------GTGC--TGACTTGCGAGCGCTTGAACTTAA
**
302389 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAA
1 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAA
302430 TGCAAAGCATCGCGTGC
1 TGCAAAGCATCGCGTGC
302447 GAGTGCTTTG
Statistics
Matches: 97, Mismatches: 2, Indels: 16
0.84 0.02 0.14
Matches are distributed among these distances:
41 52 0.54
43 4 0.04
47 4 0.04
49 37 0.38
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAA
Left flanking sequence: Indices 301799 -- 302298
ATTGAGTAGGCCTAGCTTTTCGGAGCTGCTCCCAGCTCACACTATGGTGGAGGAGGTGCCGTGAA
GATCTAGGAGTGTGAGCAGTACGAGCTGAAAGGCTCCCATACTGTTTGGAGGGCAGGGGGCATAG
ATGCCAAACCTGACCCCTATCTATCGTCGTAGAAGCTGTTCCTTTGAAAGATTATGTTTATCGGG
TATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCTACGATAGTAGGGTGAGGAAAGCTA
CTAAATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGT
CTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGGTGCGAGCGAGTTTGCGAGCAAA
TTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGGAAGGGTCG
GTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTG
Right flanking sequence: Indices 302447 -- 302946
GAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGA
CTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGC
TTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAAT
GCAAAGCCCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTT
GCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTG
CTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCT
TTAAAGAGCGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTT
GCGAGCTAATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGT
Found at i:302370 original size:49 final size:51
Alignment explanation
Indices: 302316--302648 Score: 388
Period size: 54 Copynumber: 6.6 Consensus size: 51
302306 CATCGCGTGC
**
302316 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-ATA-GAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTT
**
302365 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC--------GTGC--
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTT
**
302406 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG--TGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTT
*
302455 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
*
302509 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
*
302563 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
**
302617 TGACTTGCGAGCGCTTGAACTTAATGCAAAGC
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGC
302649 CCAAATGAGC
Statistics
Matches: 264, Mismatches: 7, Indels: 21
0.90 0.02 0.07
Matches are distributed among these distances:
41 35 0.13
43 4 0.02
47 4 0.02
49 74 0.28
51 1 0.00
54 146 0.55
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (51 bp):
TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTT
Left flanking sequence: Indices 301816 -- 302315
TTTCGGAGCTGCTCCCAGCTCACACTATGGTGGAGGAGGTGCCGTGAAGATCTAGGAGTGTGAGC
AGTACGAGCTGAAAGGCTCCCATACTGTTTGGAGGGCAGGGGGCATAGATGCCAAACCTGACCCC
TATCTATCGTCGTAGAAGCTGTTCCTTTGAAAGATTATGTTTATCGGGTATCCAATCAATTAATC
CCCCAAACCGGGGAAGCTTAAGCTACGATAGTAGGGTGAGGAAAGCTACTAAATGGAAGGCTTCG
CTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGTCTACACTCCACTACAAG
AGCCCCATTAGTGCGGTGCGGTGCGGTGCGAGCGAGTTTGCGAGCAAATTTTGACGTCATGAGCA
CTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGGAAGGGTCGGTCGGGAGGGAGGGTCG
CGAGCAAAGCTCTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGC
Right flanking sequence: Indices 302649 -- 303148
CCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCG
AGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGAC
TTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGA
GCGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCT
AATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTT
TGCGAGTTCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTT
GCGAGTGCTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTTT
AGGCATGATGGTATGGTATTCCTACCACTTGGAAGGCCGACCAAA
Found at i:302431 original size:90 final size:90
Alignment explanation
Indices: 302299--302493 Score: 320
Period size: 90 Copynumber: 2.2 Consensus size: 90
302289 GAGCGCTTTG
302299 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGAT-AGAGTGC
1 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGAGAGTGC
302363 TTTGACTTGCGAGCGCTTGAACTTAA
65 TTTGACTTGCGAGCGCTTGAACTTAA
** *
302389 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCT
1 TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGAGTGCT
**
302454 TTGACTTGCGAGCGCTTTCACTTAA
66 TTGACTTGCGAGCGCTTGAACTTAA
*
302479 TGCAAAGCCTCGCGT
1 TGCAAAGCATCGCGT
302494 ATATTGCGAG
Statistics
Matches: 98, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 1 0.01
90 97 0.99
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (90 bp):
TGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGAGTGCT
TTGACTTGCGAGCGCTTGAACTTAA
Left flanking sequence: Indices 301799 -- 302298
ATTGAGTAGGCCTAGCTTTTCGGAGCTGCTCCCAGCTCACACTATGGTGGAGGAGGTGCCGTGAA
GATCTAGGAGTGTGAGCAGTACGAGCTGAAAGGCTCCCATACTGTTTGGAGGGCAGGGGGCATAG
ATGCCAAACCTGACCCCTATCTATCGTCGTAGAAGCTGTTCCTTTGAAAGATTATGTTTATCGGG
TATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCTACGATAGTAGGGTGAGGAAAGCTA
CTAAATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGT
CTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGGTGCGAGCGAGTTTGCGAGCAAA
TTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGGAAGGGTCG
GTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTG
Right flanking sequence: Indices 302494 -- 302993
ATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGT
GCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTG
CGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGT
GATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGT
GCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTT
TGTGCAAAGCACTCTCCTTTAAAGAGCGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTA
GGGTGCGAAGCAAGCTTTGCGAGCTAATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGA
TTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGTTCCCTCACGCTTT
Found at i:302518 original size:16 final size:16
Alignment explanation
Indices: 302497--302530 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
302487 CTCGCGTATA
* *
302497 TTGCGAGTGCTTTGAC
1 TTGCGAGCGCTTTCAC
302513 TTGCGAGCGCTTTCAC
1 TTGCGAGCGCTTTCAC
302529 TT
1 TT
302531 AATGCAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.26, T:0.38
Consensus pattern (16 bp):
TTGCGAGCGCTTTCAC
Left flanking sequence: Indices 301997 -- 302496
CCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCTACGATAGTAGGGTGAGGAAAGCTACTA
AATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGTCTA
CACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGGTGCGAGCGAGTTTGCGAGCAAATTT
TGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGGAAGGGTCGGTC
GGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTT
GCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
AATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTG
CTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATA
Right flanking sequence: Indices 302531 -- 303030
AATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCC
TCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAA
AGCTCTCTTGCGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGT
GAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGT
GCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGAGCGAGTGCGCTT
TGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCTAATCAAATCACT
CGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGTTCCCT
CACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGC
Found at i:302526 original size:54 final size:54
Alignment explanation
Indices: 302406--302649 Score: 426
Period size: 54 Copynumber: 4.6 Consensus size: 54
302396 CATCGCGTGC
*
302406 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG-----TGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
302455 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
302509 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
302563 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
**
302617 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCC
1 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCC
302650 CAAATGAGCA
Statistics
Matches: 187, Mismatches: 3, Indels: 5
0.96 0.02 0.03
Matches are distributed among these distances:
49 37 0.20
54 150 0.80
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (54 bp):
TGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
Left flanking sequence: Indices 301906 -- 302405
TGTTTGGAGGGCAGGGGGCATAGATGCCAAACCTGACCCCTATCTATCGTCGTAGAAGCTGTTCC
TTTGAAAGATTATGTTTATCGGGTATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCTA
CGATAGTAGGGTGAGGAAAGCTACTAAATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTA
GGCAACGAGCGTAGAGTGATCGTCTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCG
GTGCGAGCGAGTTTGCGAGCAAATTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGT
GCAAAGCCCAAACGGAAGGGTCGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCT
TTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGT
GCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
Right flanking sequence: Indices 302650 -- 303149
CAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGA
GTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACT
TGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGAG
CGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCTA
ATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTT
GCGAGTTCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTTG
CGAGTGCTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTTTA
GGCATGATGGTATGGTATTCCTACCACTTGGAAGGCCGACCAAAC
Found at i:302572 original size:16 final size:16
Alignment explanation
Indices: 302551--302584 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
302541 CTCGCGTATA
* *
302551 TTGCGAGTGCTTTGAC
1 TTGCGAGCGCTTTCAC
302567 TTGCGAGCGCTTTCAC
1 TTGCGAGCGCTTTCAC
302583 TT
1 TT
302585 AATGCAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.26, T:0.38
Consensus pattern (16 bp):
TTGCGAGCGCTTTCAC
Left flanking sequence: Indices 302051 -- 302550
GAAAGCTACTAAATGGAAGGCTTCGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGA
GTGATCGTCTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGGTGCGAGCGAGTTTG
CGAGCAAATTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGG
AAGGGTCGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTGTGCAAAGCATCG
CGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAG
CGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATC
GCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTG
CTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATA
Right flanking sequence: Indices 302585 -- 303084
AATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCC
CAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGA
GTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACT
TGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGAG
CGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCTA
ATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTT
GCGAGTTCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTTG
CGAGTGCTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCT
Found at i:302768 original size:17 final size:17
Alignment explanation
Indices: 302672--302777 Score: 97
Period size: 17 Copynumber: 5.9 Consensus size: 17
302662 GCTCTCTTGC
302672 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
* *
302689 GAT-AGAGTGCTTTGACTTGC
1 G-TGCGAGTGCTTTGA---GT
302709 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
* * *
302726 GAGAGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GT
302746 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
302763 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
302778 CTTGCGATAG
Statistics
Matches: 71, Mismatches: 10, Indels: 16
0.73 0.10 0.16
Matches are distributed among these distances:
17 42 0.59
18 1 0.01
19 1 0.01
20 27 0.38
ACGTcount: A:0.15, C:0.13, G:0.38, T:0.34
Consensus pattern (17 bp):
GTGCGAGTGCTTTGAGT
Left flanking sequence: Indices 302172 -- 302671
GCGAGTTTGCGAGCAAATTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAG
CCCAAACGGAAGGGTCGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTGTGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTG
ACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATG
CAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATA
TTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCT
TTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGA
GCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCTCTTGC
Right flanking sequence: Indices 302778 -- 303277
CTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAG
AGCGAGTGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGC
TAATCAAATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCT
TTGCGAGTTCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTT
TGCGAGTGCTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTT
TAGGCATGATGGTATGGTATTCCTACCACTTGGAAGGCCGACCAAACCTACATAGGAGCGATAGC
GAAGCCAAGCCGTCCAAAGGCGAGCAGCCCTTATTGCAAACGGCCTACTTATAGCCGTAATAGGA
AAAAGGCGCTACGGAACTACTGTCGTACTACTAAAGTACCAAAGG
Found at i:302792 original size:20 final size:19
Alignment explanation
Indices: 302691--302795 Score: 94
Period size: 20 Copynumber: 5.6 Consensus size: 19
302681 CTTTGAGTGA
302691 TAGAGTGCTTTGACTTGCG
1 TAGAGTGCTTTGACTTGCG
* * *
302710 TGCGAGTGCTTTGA-GTGAG
1 T-AGAGTGCTTTGACTTGCG
302729 -AGAGTGCTTTGACTTGCG
1 TAGAGTGCTTTGACTTGCG
* *
302747 TGCGAGTGCTTTGAGTGTGC-
1 T-AGAGTGCTTTGACT-TGCG
302767 --GAGTGCTTTGACTTGCG
1 TAGAGTGCTTTGACTTGCG
302784 ATAGAGTGCTTT
1 -TAGAGTGCTTT
302796 TCACGCTTTG
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
16 3 0.04
17 23 0.34
18 3 0.04
19 4 0.06
20 32 0.47
21 3 0.04
ACGTcount: A:0.15, C:0.14, G:0.35, T:0.35
Consensus pattern (19 bp):
TAGAGTGCTTTGACTTGCG
Left flanking sequence: Indices 302191 -- 302690
TTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTGCAAAGCCCAAACGGAAGGGTCGGT
CGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACT
TGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACT
TAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGT
GCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTG
CGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTC
ACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAA
AGCCCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGA
Right flanking sequence: Indices 302796 -- 303295
TCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGAGCGAGTGCGCTTTGACC
CAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCTAATCAAATCACTCGCAA
AGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGTTCCCTCACGC
TTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTTGCGAGTGCTTTGATGTC
TACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTTTAGGCATGATGGTATGGT
ATTCCTACCACTTGGAAGGCCGACCAAACCTACATAGGAGCGATAGCGAAGCCAAGCCGTCCAAA
GGCGAGCAGCCCTTATTGCAAACGGCCTACTTATAGCCGTAATAGGAAAAAGGCGCTACGGAACT
ACTGTCGTACTACTAAAGTACCAAAGGCGAGCAGCCCAGCCCGCC
Found at i:302795 original size:37 final size:37
Alignment explanation
Indices: 302667--302783 Score: 200
Period size: 37 Copynumber: 3.2 Consensus size: 37
302657 GCAAAGCTCT
302667 CTTGCGTGCGAGTGCTTTGAGTGAT-AGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTG-TGAGAGTGCTTTGA
*
302704 CTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTGTGAGAGTGCTTTGA
*
302741 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTGTGAGAGTGCTTTGA
302778 CTTGCG
1 CTTGCG
302784 ATAGAGTGCT
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
37 76 1.00
ACGTcount: A:0.14, C:0.15, G:0.37, T:0.34
Consensus pattern (37 bp):
CTTGCGTGCGAGTGCTTTGAGTGTGAGAGTGCTTTGA
Left flanking sequence: Indices 302167 -- 302666
TGCGAGCGAGTTTGCGAGCAAATTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTGATTTTGTG
CAAAGCCCAAACGGAAGGGTCGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCTCTTGCGAGCGCTT
TGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTG
CTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACT
TAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGC
GTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGA
GTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 302784 -- 303283
ATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTCCTTTAAAGAGCGAG
TGCGCTTTGACCCAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGAGCTAATCA
AATCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCAAGCTTTGCGA
GTTCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTTGCGAG
TGCTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTTTAGGCA
TGATGGTATGGTATTCCTACCACTTGGAAGGCCGACCAAACCTACATAGGAGCGATAGCGAAGCC
AAGCCGTCCAAAGGCGAGCAGCCCTTATTGCAAACGGCCTACTTATAGCCGTAATAGGAAAAAGG
CGCTACGGAACTACTGTCGTACTACTAAAGTACCAAAGGCGAGCA
Found at i:302900 original size:34 final size:34
Alignment explanation
Indices: 302862--302980 Score: 114
Period size: 34 Copynumber: 3.4 Consensus size: 34
302852 GCTTTGACCC
302862 AGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCA
1 AGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCA
* ** * ***
302896 AGCTTTGCGAGCTAATCAAAT-CACTCGCAAAGCGAAGCA
1 AGCTTTGCGAG-TGAT----TGCGTTAG-GGTGCGAAGCA
302935 AGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCA
1 AGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCA
302969 AGCTTTGCGAGT
1 AGCTTTGCGAGT
302981 TCCCTCACGC
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
34 32 0.50
35 6 0.09
38 6 0.09
39 20 0.31
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (34 bp):
AGCTTTGCGAGTGATTGCGTTAGGGTGCGAAGCA
Left flanking sequence: Indices 302362 -- 302861
CTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACT
TAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGC
GTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGA
GTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGA
GTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGA
GTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGC
TTTGTGCAAAGCACTCTCCTTTAAAGAGCGAGTGCGCTTTGACCC
Right flanking sequence: Indices 302981 -- 303480
TCCCTCACGCTTTGCGAGTCGAGTGCTTTGTACTCGCAAAGCCCTAACGCTTCGCTTTGCGAGTG
CTTTGATGTCTACGAAGAAACAAACCTTGTCTTGCTTCTGGCGAAGCTTAACGTCTTTAGGCATG
ATGGTATGGTATTCCTACCACTTGGAAGGCCGACCAAACCTACATAGGAGCGATAGCGAAGCCAA
GCCGTCCAAAGGCGAGCAGCCCTTATTGCAAACGGCCTACTTATAGCCGTAATAGGAAAAAGGCG
CTACGGAACTACTGTCGTACTACTAAAGTACCAAAGGCGAGCAGCCCAGCCCGCCCTTCTTAACA
AAAGGCGAACAGCCCCCCTGTAGCTTTGTCAGGGACCTATGGGAAAGAGAAATGCTGGTTGTTGT
TATGTTGGGAGGTCCAACCCTAAGCTTATCTTTACGACCCATAACCTTACCTCAAAGGATCAAAG
ATCTTCCCGTTCCGTTGCTTCAAAAGTGCTGATAACGCGTTTCTA
Found at i:305341 original size:14 final size:14
Alignment explanation
Indices: 305299--305334 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
305289 GAAGGGTCGG
*
305299 GAGCAAAGCTCAAC
1 GAGCAAAGCTAAAC
305313 GAGCAAAGCTAAAC
1 GAGCAAAGCTAAAC
305327 GAGCAAAG
1 GAGCAAAG
305335 TGAAACGTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.22, G:0.25, T:0.06
Consensus pattern (14 bp):
GAGCAAAGCTAAAC
Left flanking sequence: Indices 304799 -- 305298
GCAGCTTTCTCTTATTCTGGTTCTGATTAAGCGGGGTAATTACACGAACTTCACGGCTGCTTCCC
CGCTCTCGCACTTATAGCGGTCGTCGAAGTGGAAGCATGCCTTCCCGGCCCGCGGAAGAGCGGAG
AGCTGCTGGAACGAGACTAAAAAGCTAATCCGGTAAGATATAGGATCCAGATGGGTTGACTGACT
CCCATGCTAGTCAGATGGTGAACCTTTAGTCCCCCTCCTACCTCCCCATATGTATGAGTGGTGAG
TGGTTGCTGGCTTCCAGTTTTTGATTCGACTGGTAGTGCCCGGTGATGTCTATCACTGATCCCTA
TGCATGGCCCTGTTCACACCTCATTTCGTTCGGAGAGGGAGGACAAGGTCTGTTTGAACGCTCGT
TTCTAAAGACCCCGAGTGTCGACGCTAAGAATGTGGTCGTTCAAAACGGAGTACCTAACCAACGT
CACGTCACGTCACGAGCAAAGCCCCCAACTTGATGGAAGGGTCGG
Right flanking sequence: Indices 305335 -- 305834
TGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTT
GACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAG
CATCGCGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGC
TTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTTGTTTCGCTTTGCGAGGGCTTCTTCCCTCTGGA
CTTTTGCCTGAGGCCATGTCTAAACGAAAGCCTTTGACTTTGAAAGTGGAAGGCACAGGTTCCTT
TCTGTCTCTGCAAGGCCAACATCATCGGGGTGGATTGCTAGAGCAGACGGAACTCTGGACAGAGC
CTCCCTCACCTGAGTAACCTTTCTTTCTATATGGACAAAACCTATTCCAATGCTTCAAAGCTACC
TTCACTGCTGTCAGCAACTACAACAAAGATTGGATTTCCATTAAC
Found at i:305409 original size:49 final size:47
Alignment explanation
Indices: 305353--305491 Score: 149
Period size: 49 Copynumber: 3.1 Consensus size: 47
305343 CGCGAGCACT
305353 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTT--ACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
305402 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGC------GTGC--TGA
1 CTTGCGAGCGC-TT-ACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
*
305443 CTTGCGAGCGC-T--TT-GTGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
305486 CTTGCG
1 CTTGCG
305492 TGCGAGTGCT
Statistics
Matches: 79, Mismatches: 2, Indels: 24
0.75 0.02 0.23
Matches are distributed among these distances:
35 13 0.16
36 2 0.03
39 1 0.01
41 18 0.23
43 13 0.16
49 30 0.38
50 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (47 bp):
CTTGCGAGCGCTTACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 304853 -- 305352
GGCTGCTTCCCCGCTCTCGCACTTATAGCGGTCGTCGAAGTGGAAGCATGCCTTCCCGGCCCGCG
GAAGAGCGGAGAGCTGCTGGAACGAGACTAAAAAGCTAATCCGGTAAGATATAGGATCCAGATGG
GTTGACTGACTCCCATGCTAGTCAGATGGTGAACCTTTAGTCCCCCTCCTACCTCCCCATATGTA
TGAGTGGTGAGTGGTTGCTGGCTTCCAGTTTTTGATTCGACTGGTAGTGCCCGGTGATGTCTATC
ACTGATCCCTATGCATGGCCCTGTTCACACCTCATTTCGTTCGGAGAGGGAGGACAAGGTCTGTT
TGAACGCTCGTTTCTAAAGACCCCGAGTGTCGACGCTAAGAATGTGGTCGTTCAAAACGGAGTAC
CTAACCAACGTCACGTCACGTCACGAGCAAAGCCCCCAACTTGATGGAAGGGTCGGGAGCAAAGC
TCAACGAGCAAAGCTAAACGAGCAAAGTGAAACGTCGCGAGCACT
Right flanking sequence: Indices 305492 -- 305991
TGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGC
ACTCTTGTTTCGCTTTGCGAGGGCTTCTTCCCTCTGGACTTTTGCCTGAGGCCATGTCTAAACGA
AAGCCTTTGACTTTGAAAGTGGAAGGCACAGGTTCCTTTCTGTCTCTGCAAGGCCAACATCATCG
GGGTGGATTGCTAGAGCAGACGGAACTCTGGACAGAGCCTCCCTCACCTGAGTAACCTTTCTTTC
TATATGGACAAAACCTATTCCAATGCTTCAAAGCTACCTTCACTGCTGTCAGCAACTACAACAAA
GATTGGATTTCCATTAACTCGTGTACCCCTTTTCTTGATCCACCTCTAATCAACCATCTTTCATA
GACTCAGATGGATCTTATGGTCACGTTCAATAAACTAACCCATTGAAGAAAGCACACATGCAAAG
AAAGCTATTTGAGATCAAAGACAGGGCCAAATGATCATCGGTTAG
Found at i:305481 original size:41 final size:43
Alignment explanation
Indices: 305374--305491 Score: 118
Period size: 41 Copynumber: 2.8 Consensus size: 43
305364 TTGAACTTAA
305374 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCAC
1 TGCAAAGCATCGCGATAGAGTGC-TTGACTTGCGAGCGCTTT-AC
* * ** * * *
305419 T-TAATGCAAAGC-ATCGCGTGC-TGACTTGCGAGCGCTTT-G
1 TGCAAAGCATCGCGATAGAGTGCTTGACTTGCGAGCGCTTTAC
305458 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCG
1 TGCAAAGCATCGCGATAGAGTGC-TTGACTTGCG
305492 TGCGAGTGCT
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.02
40 7 0.12
41 24 0.43
43 16 0.29
44 7 0.12
45 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (43 bp):
TGCAAAGCATCGCGATAGAGTGCTTGACTTGCGAGCGCTTTAC
Left flanking sequence: Indices 304874 -- 305373
CTTATAGCGGTCGTCGAAGTGGAAGCATGCCTTCCCGGCCCGCGGAAGAGCGGAGAGCTGCTGGA
ACGAGACTAAAAAGCTAATCCGGTAAGATATAGGATCCAGATGGGTTGACTGACTCCCATGCTAG
TCAGATGGTGAACCTTTAGTCCCCCTCCTACCTCCCCATATGTATGAGTGGTGAGTGGTTGCTGG
CTTCCAGTTTTTGATTCGACTGGTAGTGCCCGGTGATGTCTATCACTGATCCCTATGCATGGCCC
TGTTCACACCTCATTTCGTTCGGAGAGGGAGGACAAGGTCTGTTTGAACGCTCGTTTCTAAAGAC
CCCGAGTGTCGACGCTAAGAATGTGGTCGTTCAAAACGGAGTACCTAACCAACGTCACGTCACGT
CACGAGCAAAGCCCCCAACTTGATGGAAGGGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAACGA
GCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAA
Right flanking sequence: Indices 305492 -- 305991
TGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGC
ACTCTTGTTTCGCTTTGCGAGGGCTTCTTCCCTCTGGACTTTTGCCTGAGGCCATGTCTAAACGA
AAGCCTTTGACTTTGAAAGTGGAAGGCACAGGTTCCTTTCTGTCTCTGCAAGGCCAACATCATCG
GGGTGGATTGCTAGAGCAGACGGAACTCTGGACAGAGCCTCCCTCACCTGAGTAACCTTTCTTTC
TATATGGACAAAACCTATTCCAATGCTTCAAAGCTACCTTCACTGCTGTCAGCAACTACAACAAA
GATTGGATTTCCATTAACTCGTGTACCCCTTTTCTTGATCCACCTCTAATCAACCATCTTTCATA
GACTCAGATGGATCTTATGGTCACGTTCAATAAACTAACCCATTGAAGAAAGCACACATGCAAAG
AAAGCTATTTGAGATCAAAGACAGGGCCAAATGATCATCGGTTAG
Found at i:305518 original size:20 final size:20
Alignment explanation
Indices: 305469--305523 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
305459 GCAAAGCATC
305469 GCGATAGAGTGCTTTGACTT
1 GCGATAGAGTGCTTTGACTT
*
305489 GCG-TGCGAGTGCTTTGACTT
1 GCGAT-AGAGTGCTTTGACTT
305509 GCGATAGAGTGCTTT
1 GCGATAGAGTGCTTT
305524 TCACGCTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35
Consensus pattern (20 bp):
GCGATAGAGTGCTTTGACTT
Left flanking sequence: Indices 304969 -- 305468
TAGGATCCAGATGGGTTGACTGACTCCCATGCTAGTCAGATGGTGAACCTTTAGTCCCCCTCCTA
CCTCCCCATATGTATGAGTGGTGAGTGGTTGCTGGCTTCCAGTTTTTGATTCGACTGGTAGTGCC
CGGTGATGTCTATCACTGATCCCTATGCATGGCCCTGTTCACACCTCATTTCGTTCGGAGAGGGA
GGACAAGGTCTGTTTGAACGCTCGTTTCTAAAGACCCCGAGTGTCGACGCTAAGAATGTGGTCGT
TCAAAACGGAGTACCTAACCAACGTCACGTCACGTCACGAGCAAAGCCCCCAACTTGATGGAAGG
GTCGGGAGCAAAGCTCAACGAGCAAAGCTAAACGAGCAAAGTGAAACGTCGCGAGCACTCTTGCG
AGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAAT
GCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATC
Right flanking sequence: Indices 305524 -- 306023
TCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTTGTTTCGCTTTGCGAGGGCTTCTTCCC
TCTGGACTTTTGCCTGAGGCCATGTCTAAACGAAAGCCTTTGACTTTGAAAGTGGAAGGCACAGG
TTCCTTTCTGTCTCTGCAAGGCCAACATCATCGGGGTGGATTGCTAGAGCAGACGGAACTCTGGA
CAGAGCCTCCCTCACCTGAGTAACCTTTCTTTCTATATGGACAAAACCTATTCCAATGCTTCAAA
GCTACCTTCACTGCTGTCAGCAACTACAACAAAGATTGGATTTCCATTAACTCGTGTACCCCTTT
TCTTGATCCACCTCTAATCAACCATCTTTCATAGACTCAGATGGATCTTATGGTCACGTTCAATA
AACTAACCCATTGAAGAAAGCACACATGCAAAGAAAGCTATTTGAGATCAAAGACAGGGCCAAAT
GATCATCGGTTAGGGAGTGAGAAGGAAGCTGAAGAGAGTTTGACG
Found at i:311048 original size:19 final size:19
Alignment explanation
Indices: 311021--311059 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
311011 TGATGGAAGG
*
311021 GTCGGGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
311040 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
311059 G
1 G
311060 AGCAAAGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.28, G:0.31, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 310521 -- 311020
CACGGGGAAAACGGGGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCACTCTAACCGACTGA
GCTATTTCCCCTCTCCCAATTAGGTTGCCTCCTCCACTCTGGAATGAATAAGCGAGCGCATAGAG
TTAGATAGATAAAGAGATCAATCAATGTCGCATTTCCTCTCCCTCGACCTCCTTATCTCTCCTAA
TTCGTTCCATTCATTAGGTTGCGATCGTTACCTTTGAATGAATGTGGAAAACCGGGATCTCTGGA
ACCCTATCAACAAGTTGCATTTACATAAATGCTCTCTCCCAAGCAAGCAACCGAGCCTACGAGCG
AAGTTGTAGGAGCGAGCCTACTGCGTGCTATGCAAGCTGTAACTGTGAGCAGGATACAACGTCCA
TACAGTTGATGCGCTATGGTAGCTTTCTTAGAAACGGACGCTACGTCAACTTCCGTCTACTTTTT
TTTCGAAGCGAGCCATCACGTCACGTCACGTCAATTGATGGAAGG
Right flanking sequence: Indices 311060 -- 311559
AGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGA
GTGCTTTGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGCGATAGAGTG
CTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCAC
GCTTTGCGAGTGCGTGCTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCACTAATGCCATT
CAAAGTTGCGAGTGCTTTGTGGGCTTTGCTAATCTCGTTGCTTCGCTTTGCGAGTGCTTTGATCA
CAGGCTCGCGAGCTCGACCAACGATCTCCCAATGGAAGGCACAAATGGAGGGAGCGTTGGAGATC
AACTTTTGAGGTAAACGCGCCGAAGGAACACCACCCGCGGGGCATTTTGTCTTTCACTTATGGGA
TCAGCATTCATCTATATTGGTCAACAACGGACTTGGAAAGGGCCC
Found at i:311245 original size:20 final size:20
Alignment explanation
Indices: 311176--311250 Score: 95
Period size: 20 Copynumber: 3.9 Consensus size: 20
311166 GCAAAGCTCT
311176 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
311196 ---GTGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
311213 CTTGCG-TGCGAGTGCTTTGA
1 CTTGCGAT-AGAGTGCTTTGA
311233 CTTGCGATAGAGTGCTTT
1 CTTGCGATAGAGTGCTTT
311251 TCACGCTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
17 16 0.35
19 1 0.02
20 28 0.61
21 1 0.02
ACGTcount: A:0.17, C:0.15, G:0.32, T:0.36
Consensus pattern (20 bp):
CTTGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 310676 -- 311175
TGTCGCATTTCCTCTCCCTCGACCTCCTTATCTCTCCTAATTCGTTCCATTCATTAGGTTGCGAT
CGTTACCTTTGAATGAATGTGGAAAACCGGGATCTCTGGAACCCTATCAACAAGTTGCATTTACA
TAAATGCTCTCTCCCAAGCAAGCAACCGAGCCTACGAGCGAAGTTGTAGGAGCGAGCCTACTGCG
TGCTATGCAAGCTGTAACTGTGAGCAGGATACAACGTCCATACAGTTGATGCGCTATGGTAGCTT
TCTTAGAAACGGACGCTACGTCAACTTCCGTCTACTTTTTTTTCGAAGCGAGCCATCACGTCACG
TCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGAGCAAA
GTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTT
TGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 311251 -- 311750
TCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCACTAATGC
CATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTAATCTCGTTGCTTCGCTTTGCGAGTGCTTTG
ATCACAGGCTCGCGAGCTCGACCAACGATCTCCCAATGGAAGGCACAAATGGAGGGAGCGTTGGA
GATCAACTTTTGAGGTAAACGCGCCGAAGGAACACCACCCGCGGGGCATTTTGTCTTTCACTTAT
GGGATCAGCATTCATCTATATTGGTCAACAACGGACTTGGAAAGGGCCCCGAGGAAAAGGGCATT
AAGCTTCAGTTTCCTTCGACCCACGTCAAACGCCATCCGGGGCGAGCAACTTACTGGATGTAGCG
GAACTTCTGCCAGAGTCCCACTTCACTTTCCGGGCGAGTCTATCCATTTACGTAGTAGCAAAGTC
ACTTCCGCCCCCCCCCGTCCACTTCATTCATTCCATCCCGGGAGG
Found at i:314723 original size:14 final size:14
Alignment explanation
Indices: 314704--314759 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 14
314694 TATTCGTCGG
314704 GAGCAAAGCTAAAC
1 GAGCAAAGCTAAAC
314718 GAGCAAAG-TGAAACGTCGC
1 GAGCAAAGCT-AAA-----C
314737 GAGCAAAGCTAAAC
1 GAGCAAAGCTAAAC
314751 GAGCAAAGC
1 GAGCAAAGC
314760 GTCGCGAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
13 1 0.03
14 21 0.60
19 12 0.34
20 1 0.03
ACGTcount: A:0.45, C:0.21, G:0.27, T:0.07
Consensus pattern (14 bp):
GAGCAAAGCTAAAC
Left flanking sequence: Indices 314204 -- 314703
TAGGTAGATCAAGCCCGTGGATGGATAATCTTCACTTTTTTGCGATGCACCCCAAAAAGAAAGTC
GTGAGAAACTGCCTGCTTCCGGTTGGGTTGACGGCCCTTCTCGATTCTTCTTTTTCTTCCTGCAT
CAGATGCTGACACGACGGAGGAATCAGCCACGATGATGGTCTCATCTGCAATCCAAAAATCGTTG
GTGGGTAACTGGTGCAGCAGAAGAGGTTGGTTTGGTTTTCATCCCCTCCACTTCTTTTGTCGGCT
CGCAATCCCCAAGGATCTTCTAAGAGCTGATCCATAATGAGGAGATATGGAGAAAGAGGATCCCC
TTGTGGAAGTCCCCTGCTGCTTTCAAAGAATCCCGCTGTTTGCGCATTAACAATGATTGGAACCA
TTTTTTTCCCACATTCGCCTCTGGAACTCGAAACCCTGACCACTTCCTGCAACGTCATGAGCACT
GAAAAGCGAGTGCTTGATTTTGTGCTTTGCCCAGTTATTCGTCGG
Right flanking sequence: Indices 314760 -- 315259
GTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTG
CGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAA
AGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCT
TTGATCCAATACTCAAACTCAAAGAATGAGGGGGCTCGGATGTTGGGATCCATTCTTTTCGCACT
ATAAGTAGTTGGAGCCAACAAAAGGGCTCGGTTTGGTTTCATCATTGGCGATAAAGAAGAGAAAA
ACCTGACCTTATTTGATCAGACCGCTCCTGGCGTTCGAACTAGTCATTAATGGTAAGGGTCGGCC
TTTAGGGTTCGGTATGCGTTGCGAACACTTGAATTTTGAGCGTCTCATCTTCATTCTCTGGAGAA
GCGAAAATCGAACGGATAGAGCAGATGGTCCAACTACAGAACTTC
Found at i:314831 original size:49 final size:49
Alignment explanation
Indices: 314772--314883 Score: 199
Period size: 49 Copynumber: 2.3 Consensus size: 49
314762 CGCGAGCACT
*
314772 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGAT-AGAGTGCTTTGA
314821 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
314870 CTTGCGAGCGCTTT
1 CTTGCGAGCGCTTT
314884 GTGCAAAGCT
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
49 60 0.98
50 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (49 bp):
CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 314272 -- 314771
AGAAACTGCCTGCTTCCGGTTGGGTTGACGGCCCTTCTCGATTCTTCTTTTTCTTCCTGCATCAG
ATGCTGACACGACGGAGGAATCAGCCACGATGATGGTCTCATCTGCAATCCAAAAATCGTTGGTG
GGTAACTGGTGCAGCAGAAGAGGTTGGTTTGGTTTTCATCCCCTCCACTTCTTTTGTCGGCTCGC
AATCCCCAAGGATCTTCTAAGAGCTGATCCATAATGAGGAGATATGGAGAAAGAGGATCCCCTTG
TGGAAGTCCCCTGCTGCTTTCAAAGAATCCCGCTGTTTGCGCATTAACAATGATTGGAACCATTT
TTTTCCCACATTCGCCTCTGGAACTCGAAACCCTGACCACTTCCTGCAACGTCATGAGCACTGAA
AAGCGAGTGCTTGATTTTGTGCTTTGCCCAGTTATTCGTCGGGAGCAAAGCTAAACGAGCAAAGT
GAAACGTCGCGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCACT
Right flanking sequence: Indices 314884 -- 315383
GTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCG
AGTGCTTTGATCCAATACTCAAACTCAAAGAATGAGGGGGCTCGGATGTTGGGATCCATTCTTTT
CGCACTATAAGTAGTTGGAGCCAACAAAAGGGCTCGGTTTGGTTTCATCATTGGCGATAAAGAAG
AGAAAAACCTGACCTTATTTGATCAGACCGCTCCTGGCGTTCGAACTAGTCATTAATGGTAAGGG
TCGGCCTTTAGGGTTCGGTATGCGTTGCGAACACTTGAATTTTGAGCGTCTCATCTTCATTCTCT
GGAGAAGCGAAAATCGAACGGATAGAGCAGATGGTCCAACTACAGAACTTCTTCTTTTTCATTAC
TTCCATGGTCGTGCCTCGTGGCACGGCAGCACCCGTACTATTGAAATGGTTCGTCAGTAGAGATG
TTCCCACAGGTGCCCCTTCTTCCAATGGTACGATAATTCCTATTC
Found at i:317815 original size:21 final size:21
Alignment explanation
Indices: 317789--317830 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
317779 AGTGACGACT
317789 CTTCTCCACTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
**
317810 CTTCTCTTCTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
317831 AAGTGCGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (21 bp):
CTTCTCCACTTCGGAGCGAGC
Left flanking sequence: Indices 317289 -- 317788
CCATATGCTCCGATTGGAACTGGAAGTTCCGGAACAGGCGGCTGGTATACCACCATAATGAAACT
GCCTTTTATTTTTTGCATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCGCGTAGTTTGT
TACGTCAGCTCCAAAAGGAGAAGTTGCATTGGAATCGAGAAAGTTCCATTGAGTTCATAATTGCA
TAAAAGGAGTCAAAGTAGTGGCTGCGGCGCGTCGAGGCACTTCTTCGACGGTCCCCGTCCGCCCA
AAAAAGGCGAGACAGAATGGGCGGGCACTACTAACCAAGCCAAGCCTAGTTCTCACCGATAGGCG
CTGGTAGCTTGCTTCCATTTTTGCCTTTGTCCCGACATGTTCATCTCCTCCATCCCTCCCCATTG
TCGCTGTGTCGCGAAAGAGAGGGACCAAGCTGCGAGTGTTGCCTACGAGCGAAGTTGTAGGAGCG
AGCTGCGAAGCGAGACTAAAGGAAGGCGAGCTGCGAGTGACGACT
Right flanking sequence: Indices 317831 -- 318330
AAGTGCGGAGCAAGCCTACATAGGCTTCTGAAAAGGAGATCAAGACGCTCAACTTGCTCCTCCCG
AATGAGTGACGTTCTTCATCTTGCTTCCTCTCTACACTCCCCTTCAAGCAGCTAACGCGCACTCT
TCAGGTACCTCTGGTGCAAACGGCCTTATGGCATATCCATTGCAGCAGCAAGGGCAGTTTCCTTT
AGCTAGTGGAGCCTTGAATGAGCTGTTCCTTAGGGATAGCCGGGCATCTAAAAAGACAGACAGAA
AGCGGATAAGCCGGGCACAACCTGTAGTCAAGCATAGTAGATGGAACTTGACGGCGCATCAAAGT
CGAATCCGGTCTCGCCTTCCTTTAGTTGACTCTGAAGCTTGCCCGTCATTTCTTTCTCACGCCGC
AGGGGCGAGTAGCTTTGCTTGCTAGCCTGAATACTTGCTGCTTTAACTAGCCGCTTTCCTAGCCG
CGGAGGTTCAAAGCTGTAAGCGGAGAAGGCAGCGCCTATTCTCTC
Found at i:320946 original size:25 final size:25
Alignment explanation
Indices: 320912--320962 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
320902 CTTGTATGAA
320912 TGGATATAGAAAGACAATGCCATAT
1 TGGATATAGAAAGACAATGCCATAT
320937 TGGATATAGAAAGACAATGCCATAT
1 TGGATATAGAAAGACAATGCCATAT
320962 T
1 T
320963 AGTTATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.12, G:0.20, T:0.25
Consensus pattern (25 bp):
TGGATATAGAAAGACAATGCCATAT
Left flanking sequence: Indices 320412 -- 320911
GGATCAATCTTTGACGTCCGGTGTGTAGGTCAGTCTCTCTCTCTTGGTTAGGCCTTTACAGCATG
ATCCTCTCCATCACTATGTTGGCATATTTGTTTGCAGAATCAACCATTTCAGGTCAACTGGTACA
TGTTGCTCTTTATTAGGAGTAATATCTGAGTATTACCTCTCTTTTGTCGGAAAGTCTATCTGTCG
TACTTGCCTGCGCTTCCCGGTCTCTTCGGCTCGGCAAACCTATTATATACTCTACCCCACTAACC
GCCGGAGCCAATGAAGCCAACGTTTAAGCAGCAGTAGTTCCAAGAGTTCCACTTCTCTTTTCACT
TGCTTGTGAATGAGAAAGAATTGCATTTGCTAACAGCCTGAGCCAACGAAGCCAACGAGCCAACG
TCTTTCACCGGTAGTTTAAGCAGCAGTAGTTCCAAGAGTTCCACTTCTCTTTTCACTTGCTTGTG
AATGAGAAGTGCCACTTCTCTTTTAATCGTGCTTGCTTGTATGAA
Right flanking sequence: Indices 320963 -- 321462
AGTTATTTTAATCGTGCTTGCTTGTATGAATGCTAACAGCCTGACGATTGACAGTTGCCTGCTAA
CTGCCTGCTTGAAAGTGGAAGTTGTTAGTCTCTTCACTCCCCTTAAGAAGGTCGTCTACCTATTT
CCGCAGAATGAAGAAGAAGAAACCTCTAAAAGAAGAACAGGAAGACCTGCTACCTCGAGTTCACC
GGTGAGGCCCGGGGCCAAAGAAGAAAAAAGGAATGGAATTGAGTCGTTGCGAAAGGAGTCAAGAA
GGAAAGTCAAGCCCTTTGATCTTCCGTTCTGTATCAGAACCGTACGAAACAACGTGTTCAAAGTC
AATCTTTCTGGCAGTGGAATCCGTCCGGATCAAAAAAGGGATTCTCGGCTCAGCAGCCAGAACAG
ACAGGACGCCTGTCTCCTTTTATTGTTGTTGTCCTGTTCGGATCTGGGCTGGGGCGTATGCCAGG
TTACTTAGACAAGGATAGGTCACGTAATCCGCTTCTAATAGTTTT
Found at i:322155 original size:19 final size:19
Alignment explanation
Indices: 322108--322200 Score: 141
Period size: 20 Copynumber: 4.8 Consensus size: 19
322098 GATGAGAAGG
322108 GTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
**
322127 AGAAGGGAGCAAAGCTCAAC
1 -GTCGGGAGCAAAGCTCAAC
322147 GTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCTCAA-C
*
322167 TTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
322186 GTCGGGAGCAAAGCT
1 GTCGGGAGCAAAGCT
322201 AAACAGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
19 31 0.47
20 35 0.53
ACGTcount: A:0.33, C:0.25, G:0.31, T:0.11
Consensus pattern (19 bp):
GTCGGGAGCAAAGCTCAAC
Left flanking sequence: Indices 321608 -- 322107
GGATGACCCCTCCGGAGACTGATGGTGATGTGTTCTATGTTCTGGTCTCCGCCCGGGTCCTTGTA
CGCGGAAGCTGTCAAGTCCGTACGAGCGGAGAGCGATTTCCTTTTCTATTGATAAGCAATCCTAG
TGGGCGCCACTAGGCAGTCATCTTTGATCCTGATCGACCGACTTTGCCGATCCCTAAACTAGGTT
AGGCTCTCCTTTTTCGGTAATGTAGTAATAAAGAAGCAAAAGTCCGTAAAGGCGACGAGAGATGC
CGCCTGTTCTTTCTGTTCATTCTTTTTCGGAGTGGAGCACTCACTTGCTTGTTCTTCTCTTCTTT
TGATGGGCGGGGGCAGCCTAACACTGACTCAATGGGTACTACTGTTACTGTACATCTATCCATCC
GTCGACAAAAAGATCACCCGCCGATTCTCATCTCATGGCTATTGAGAACGAATCCAATCAGATGG
TTGGTTCTATTTCACAATCTTTCTGACTGGAACTTGATGAGAAGG
Right flanking sequence: Indices 322201 -- 322700
AAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGC
AAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCA
AAGCTCTCTTGCGATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAC
GATTGGAATGGCCTGTTACAAACCACCTCAGGATGCAGCCAACATCTGAGAGCTGCCCATGGGAG
ACAGGCCCTTGCTCTTGGATAGGGCGAGGTACAAAAAGGGCTTCTTCAAGGAATTGGGATAGCAA
AGGAAGGGACAGGCGGACCGACAGAGAACTACTGGCTGAGGAGGACTTTCGCCTCGCCCACGAGC
GGATTTTCTTTGATGTAGACACCAGGGCGTCGGCTTTCATCCTATTCGCTATGGGCACTGTACTC
TTTCCTACTACCAGCGGGGACAAGATGAATGTGGTCTTGGCGGAG
Found at i:322162 original size:39 final size:39
Alignment explanation
Indices: 322108--322211 Score: 163
Period size: 39 Copynumber: 2.7 Consensus size: 39
322098 GATGAGAAGG
322108 GTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAAC
****
322147 GTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAAC
*
322186 GTCGGGAGCAAAGCTAAACAGAAGGG
1 GTCGGGAGCAAAGCTCAACAGAAGGG
322212 TCGCGAGCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.36, C:0.23, G:0.32, T:0.10
Consensus pattern (39 bp):
GTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAAC
Left flanking sequence: Indices 321608 -- 322107
GGATGACCCCTCCGGAGACTGATGGTGATGTGTTCTATGTTCTGGTCTCCGCCCGGGTCCTTGTA
CGCGGAAGCTGTCAAGTCCGTACGAGCGGAGAGCGATTTCCTTTTCTATTGATAAGCAATCCTAG
TGGGCGCCACTAGGCAGTCATCTTTGATCCTGATCGACCGACTTTGCCGATCCCTAAACTAGGTT
AGGCTCTCCTTTTTCGGTAATGTAGTAATAAAGAAGCAAAAGTCCGTAAAGGCGACGAGAGATGC
CGCCTGTTCTTTCTGTTCATTCTTTTTCGGAGTGGAGCACTCACTTGCTTGTTCTTCTCTTCTTT
TGATGGGCGGGGGCAGCCTAACACTGACTCAATGGGTACTACTGTTACTGTACATCTATCCATCC
GTCGACAAAAAGATCACCCGCCGATTCTCATCTCATGGCTATTGAGAACGAATCCAATCAGATGG
TTGGTTCTATTTCACAATCTTTCTGACTGGAACTTGATGAGAAGG
Right flanking sequence: Indices 322212 -- 322711
TCGCGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG
TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCTCTTG
CGATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGACGATTGGAATGG
CCTGTTACAAACCACCTCAGGATGCAGCCAACATCTGAGAGCTGCCCATGGGAGACAGGCCCTTG
CTCTTGGATAGGGCGAGGTACAAAAAGGGCTTCTTCAAGGAATTGGGATAGCAAAGGAAGGGACA
GGCGGACCGACAGAGAACTACTGGCTGAGGAGGACTTTCGCCTCGCCCACGAGCGGATTTTCTTT
GATGTAGACACCAGGGCGTCGGCTTTCATCCTATTCGCTATGGGCACTGTACTCTTTCCTACTAC
CAGCGGGGACAAGATGAATGTGGTCTTGGCGGAGTTCGTCCAGAA
Found at i:322365 original size:17 final size:18
Alignment explanation
Indices: 322340--322394 Score: 76
Period size: 17 Copynumber: 3.0 Consensus size: 18
322330 AAAGCTCTCT
322340 TGCGATAGAGTGCTTTGA
1 TGCGATAGAGTGCTTTGA
*
322358 -GTGATAGAGTGCTTTGA
1 TGCGATAGAGTGCTTTGA
322375 CTTGCGATAGAGTGCTTTGA
1 --TGCGATAGAGTGCTTTGA
322395 CGATTGGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.50
20 16 0.50
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.35
Consensus pattern (18 bp):
TGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 321840 -- 322339
AAAAGTCCGTAAAGGCGACGAGAGATGCCGCCTGTTCTTTCTGTTCATTCTTTTTCGGAGTGGAG
CACTCACTTGCTTGTTCTTCTCTTCTTTTGATGGGCGGGGGCAGCCTAACACTGACTCAATGGGT
ACTACTGTTACTGTACATCTATCCATCCGTCGACAAAAAGATCACCCGCCGATTCTCATCTCATG
GCTATTGAGAACGAATCCAATCAGATGGTTGGTTCTATTTCACAATCTTTCTGACTGGAACTTGA
TGAGAAGGGTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAA
CCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTAAACAGAAGGGTCGCGAGCAAAGTGAAAC
GTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTG
CGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCTCT
Right flanking sequence: Indices 322395 -- 322894
CGATTGGAATGGCCTGTTACAAACCACCTCAGGATGCAGCCAACATCTGAGAGCTGCCCATGGGA
GACAGGCCCTTGCTCTTGGATAGGGCGAGGTACAAAAAGGGCTTCTTCAAGGAATTGGGATAGCA
AAGGAAGGGACAGGCGGACCGACAGAGAACTACTGGCTGAGGAGGACTTTCGCCTCGCCCACGAG
CGGATTTTCTTTGATGTAGACACCAGGGCGTCGGCTTTCATCCTATTCGCTATGGGCACTGTACT
CTTTCCTACTACCAGCGGGGACAAGATGAATGTGGTCTTGGCGGAGTTCGTCCAGAATGACGACA
GGATCAGGGAGTACGCTTGGTGCGAGGCCGTGGTGGCCTATCTATAGCCGGTGTCTCTCTGCACA
TGTCATTGGCGAGCTCACCTCTATATGTATGCGGGTGCACCATACAGCTCGAGGTCAAGCAATGC
AGACTAGCTTCCATTTGTTCTCTATCTTGCCTGAACTATGCATTT
Found at i:322385 original size:20 final size:20
Alignment explanation
Indices: 322338--322395 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
322328 GCAAAGCTCT
322338 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
322358 ---GTGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
322375 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
322395 C
1 C
322396 GATTGGAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 16 0.48
20 17 0.52
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (20 bp):
CTTGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 321838 -- 322337
GCAAAAGTCCGTAAAGGCGACGAGAGATGCCGCCTGTTCTTTCTGTTCATTCTTTTTCGGAGTGG
AGCACTCACTTGCTTGTTCTTCTCTTCTTTTGATGGGCGGGGGCAGCCTAACACTGACTCAATGG
GTACTACTGTTACTGTACATCTATCCATCCGTCGACAAAAAGATCACCCGCCGATTCTCATCTCA
TGGCTATTGAGAACGAATCCAATCAGATGGTTGGTTCTATTTCACAATCTTTCTGACTGGAACTT
GATGAGAAGGGTCGGGAGCAAAGCTCAACAGAAGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTC
AACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTAAACAGAAGGGTCGCGAGCAAAGTGAA
ACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 322396 -- 322895
GATTGGAATGGCCTGTTACAAACCACCTCAGGATGCAGCCAACATCTGAGAGCTGCCCATGGGAG
ACAGGCCCTTGCTCTTGGATAGGGCGAGGTACAAAAAGGGCTTCTTCAAGGAATTGGGATAGCAA
AGGAAGGGACAGGCGGACCGACAGAGAACTACTGGCTGAGGAGGACTTTCGCCTCGCCCACGAGC
GGATTTTCTTTGATGTAGACACCAGGGCGTCGGCTTTCATCCTATTCGCTATGGGCACTGTACTC
TTTCCTACTACCAGCGGGGACAAGATGAATGTGGTCTTGGCGGAGTTCGTCCAGAATGACGACAG
GATCAGGGAGTACGCTTGGTGCGAGGCCGTGGTGGCCTATCTATAGCCGGTGTCTCTCTGCACAT
GTCATTGGCGAGCTCACCTCTATATGTATGCGGGTGCACCATACAGCTCGAGGTCAAGCAATGCA
GACTAGCTTCCATTTGTTCTCTATCTTGCCTGAACTATGCATTTG
Found at i:329883 original size:35 final size:35
Alignment explanation
Indices: 329841--329943 Score: 170
Period size: 35 Copynumber: 2.9 Consensus size: 35
329831 GCGAGTGCTT
**
329841 TGACTTGCGAGCGCTTTGTGTAAAGCATCGCGTGC
1 TGACTTGCGAGCGCTTAATGTAAAGCATCGCGTGC
*
329876 TGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGC
1 TGACTTGCGAGCGCTTAATGTAAAGCATCGCGTGC
*
329911 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGT
1 TGACTTGCGAGCGCTTAATGTAAAGCATCGCGT
329944 ATATTGCGAG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.26
Consensus pattern (35 bp):
TGACTTGCGAGCGCTTAATGTAAAGCATCGCGTGC
Left flanking sequence: Indices 329341 -- 329840
AATGGATTGTGCAGCAAAGTTGTCACCCAGCTTGCTTGACTTCACGTAGAGTTTTGTTTTGAGTA
ACTTGACTTCCATTCGTCAAAGTGCAGATCAAAAGGAAGCAGTGAGGCCCGGTTGCCTACAAAGG
CGCCGGGGCGAGGGGCGGGAGAGATGCATTCTCTTTTATCATAGATAAAAAAACGAAAGAAAGCA
AGAAAATGAGTGAGTCATCCATGCCGGAGCAGCTACAATTGCTTCTGCGGGAGCGAGTGGGCCTC
CGGTCCGGCACAAGCTTGAACTTTGCATTTACGGCCCTATACTTAGGTGAATTAGAGGGCGTCCA
TACGTATAAAGAAAGAAGCATACGATAGGAAGGAGGAGATGATGAAACGTCACGTCACGTCACGT
CAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGAGCAAAGTGAAACGTCGCGAGCACTCTTGCG
AGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
Right flanking sequence: Indices 329944 -- 330443
ATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCG
AGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
GCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTT
GCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCAT
CGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTGCGTATATTGC
GAGTGCTTTGACTTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTG
CGTGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCTTTTGCTTTTTCATCTGG
GAACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGG
Found at i:330013 original size:41 final size:42
Alignment explanation
Indices: 329953--330121 Score: 192
Period size: 35 Copynumber: 4.0 Consensus size: 42
329943 TATATTGCGA
329953 GTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
1 GTGC-TTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
329996 GTGC-TGACTTGCGA--GC--G--CTTAATGCAAAGCATCGC
1 GTGCTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
330031 GTGC-TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
1 GTGCTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCAT--C--GC
**
330076 GAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGC
1 --GTGC-TTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
330121 G
1 G
330122 ATAGAGTGCT
Statistics
Matches: 110, Mismatches: 2, Indels: 28
0.79 0.01 0.20
Matches are distributed among these distances:
35 32 0.29
37 3 0.03
39 3 0.03
41 25 0.23
43 6 0.05
45 4 0.04
47 5 0.05
49 32 0.29
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
GTGCTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
Left flanking sequence: Indices 329453 -- 329952
CCCGGTTGCCTACAAAGGCGCCGGGGCGAGGGGCGGGAGAGATGCATTCTCTTTTATCATAGATA
AAAAAACGAAAGAAAGCAAGAAAATGAGTGAGTCATCCATGCCGGAGCAGCTACAATTGCTTCTG
CGGGAGCGAGTGGGCCTCCGGTCCGGCACAAGCTTGAACTTTGCATTTACGGCCCTATACTTAGG
TGAATTAGAGGGCGTCCATACGTATAAAGAAAGAAGCATACGATAGGAAGGAGGAGATGATGAAA
CGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGAGCAAAGTGAAAC
GTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTG
ACTTGCGAGCGCTTTGTGTAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCG
TGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATATTGCGA
Right flanking sequence: Indices 330122 -- 330621
ATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAG
CGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCC
TCGCGTGCGTATATTGCGAGTGCTTTGACTTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGA
GAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCT
TTTGCTTTTTCATCTGGGAACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGGGGT
GATGGCTCTGATCCGCCGAGCGAGCTCTTCTTTTGCTTTTGATTGATGAAGTGCCGTGGTCACGC
TCGTACTATTGATGCATTCGTCTTTGTTGGAAAGAAAAAGGGGAGTTGGCTGCAAAAAAAGATGG
AAAAGAACGATCGCGTAATATCAATTTCTCGGCCTCGTCAGCGGC
Found at i:330106 original size:49 final size:48
Alignment explanation
Indices: 330035--330256 Score: 277
Period size: 43 Copynumber: 4.8 Consensus size: 48
330025 CATCGCGTGC
* *
330035 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTT
1 TGACTTGCGAGCGCTT-TACTTAATGCAAAGCATCGCGAT-AGAGTGCTT
330084 TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTT-ACTTAATGCAAAGCATCGCGATAGAGTGCTT
*
330133 TGACTTGCGAGCGC--T--TT-GTGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTTACTTAATGCAAAGCATCGCGATAGAGTGCTT
*
330176 TGACTTGCGAGCGC--T--TT-GTGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTTACTTAATGCAAAGCATCGCGATAGAGTGCTT
* *
330219 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCG
1 TGACTTGCGAGCGCTT-TACTTAATGCAAAGCATCGCG
330257 TGCGTATATT
Statistics
Matches: 159, Mismatches: 6, Indels: 16
0.88 0.03 0.09
Matches are distributed among these distances:
43 82 0.52
44 2 0.01
47 1 0.01
48 2 0.01
49 71 0.45
50 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (48 bp):
TGACTTGCGAGCGCTTTACTTAATGCAAAGCATCGCGATAGAGTGCTT
Left flanking sequence: Indices 329535 -- 330034
AAGAAAATGAGTGAGTCATCCATGCCGGAGCAGCTACAATTGCTTCTGCGGGAGCGAGTGGGCCT
CCGGTCCGGCACAAGCTTGAACTTTGCATTTACGGCCCTATACTTAGGTGAATTAGAGGGCGTCC
ATACGTATAAAGAAAGAAGCATACGATAGGAAGGAGGAGATGATGAAACGTCACGTCACGTCACG
TCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGAGCAAAGTGAAACGTCGCGAGCACTCTTGC
GAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTGT
GTAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGCTGACTTGCGAGCGC
TTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
Right flanking sequence: Indices 330257 -- 330756
TGCGTATATTGCGAGTGCTTTGACTTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAGAGAG
TGCTTTGACTTGCGTGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCTTTTGC
TTTTTCATCTGGGAACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGGGGTGATGG
CTCTGATCCGCCGAGCGAGCTCTTCTTTTGCTTTTGATTGATGAAGTGCCGTGGTCACGCTCGTA
CTATTGATGCATTCGTCTTTGTTGGAAAGAAAAAGGGGAGTTGGCTGCAAAAAAAGATGGAAAAG
AACGATCGCGTAATATCAATTTCTCGGCCTCGTCAGCGGCTTCCAATTGCTCGGAAATTCTCAGC
AGTTATATAAGGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCG
CATGAAAGATGGTAAAAGAACGAGAGTTCGTGCGTCAGTTTATCA
Found at i:330226 original size:135 final size:120
Alignment explanation
Indices: 329862--330256 Score: 438
Period size: 124 Copynumber: 3.1 Consensus size: 120
329852 CGCTTTGTGT
329862 AAAGCATCGC-GTGCTGACTTGCGAGCGCTTAATGTC-AAGCATCGCGTGCTGACTTGCGAGCGC
1 AAAGCATCGCGGTGCTGACTTGCGAGCGCTTAATG-CAAAGCATCGCGTGCTGACTTGCGAGCGC
*
329925 TTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
65 TTTATGCAAAGCATCGCG-ATA----GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
329986 AAAGCATCGC-GTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCT
1 AAAGCATCGCGGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGC-
* **
330050 TGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGC
65 T----TT-ATGCAAAGCATCGCGAT-AGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
**
330111 AAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
1 AAAGCATCGC----G-GTGC--TGACTTGCGAGCGCTTAATGCAAAGCATCGC------GTGC--
*
330176 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
51 TGACTTGCGAGCGCTTTATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
330241 AATGC
116 AATGC
*
330246 AAAGCCTCGCG
1 AAAGCATCGCG
330257 TGCGTATATT
Statistics
Matches: 235, Mismatches: 11, Indels: 43
0.81 0.04 0.15
Matches are distributed among these distances:
123 1 0.00
124 61 0.26
125 44 0.19
128 1 0.00
129 1 0.00
130 15 0.06
131 5 0.02
133 29 0.12
135 56 0.24
136 3 0.01
139 4 0.02
140 1 0.00
141 14 0.06
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
AAAGCATCGCGGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCT
TTATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
Left flanking sequence: Indices 329362 -- 329861
GTCACCCAGCTTGCTTGACTTCACGTAGAGTTTTGTTTTGAGTAACTTGACTTCCATTCGTCAAA
GTGCAGATCAAAAGGAAGCAGTGAGGCCCGGTTGCCTACAAAGGCGCCGGGGCGAGGGGCGGGAG
AGATGCATTCTCTTTTATCATAGATAAAAAAACGAAAGAAAGCAAGAAAATGAGTGAGTCATCCA
TGCCGGAGCAGCTACAATTGCTTCTGCGGGAGCGAGTGGGCCTCCGGTCCGGCACAAGCTTGAAC
TTTGCATTTACGGCCCTATACTTAGGTGAATTAGAGGGCGTCCATACGTATAAAGAAAGAAGCAT
ACGATAGGAAGGAGGAGATGATGAAACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGA
GCAAAGCTCAACGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAA
GCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGT
Right flanking sequence: Indices 330257 -- 330756
TGCGTATATTGCGAGTGCTTTGACTTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAGAGAG
TGCTTTGACTTGCGTGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCTTTTGC
TTTTTCATCTGGGAACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGGGGTGATGG
CTCTGATCCGCCGAGCGAGCTCTTCTTTTGCTTTTGATTGATGAAGTGCCGTGGTCACGCTCGTA
CTATTGATGCATTCGTCTTTGTTGGAAAGAAAAAGGGGAGTTGGCTGCAAAAAAAGATGGAAAAG
AACGATCGCGTAATATCAATTTCTCGGCCTCGTCAGCGGCTTCCAATTGCTCGGAAATTCTCAGC
AGTTATATAAGGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCG
CATGAAAGATGGTAAAAGAACGAGAGTTCGTGCGTCAGTTTATCA
Found at i:330286 original size:16 final size:16
Alignment explanation
Indices: 330265--330335 Score: 63
Period size: 17 Copynumber: 4.3 Consensus size: 16
330255 CGTGCGTATA
330265 TTGCGAGTGCTTTGAC
1 TTGCGAGTGCTTTGAC
330281 TTGCGAGTGCTTTGAGC
1 TTGCGAGTGCTTTGA-C
* * *
330298 GAT-AGAGTGCTTTGAG
1 -TTGCGAGTGCTTTGAC
* *
330314 TGAGAGAGTGCTTTGAC
1 T-TGCGAGTGCTTTGAC
330331 TTGCG
1 TTGCG
330336 TGCGAGTGCT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
16 17 0.40
17 25 0.58
18 1 0.02
ACGTcount: A:0.17, C:0.14, G:0.35, T:0.34
Consensus pattern (16 bp):
TTGCGAGTGCTTTGAC
Left flanking sequence: Indices 329765 -- 330264
AGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATAT
TGCGAGTGCTTTGACTTGCGAGCGCTTTGTGTAAAGCATCGCGTGCTGACTTGCGAGCGCTTAAT
GTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTT
GACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTT
GCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCA
AAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTT
GACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTGCGTATA
Right flanking sequence: Indices 330336 -- 330835
TGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCTTTTGCTTTTTCATCTGGGA
ACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGGGGTGATGGCTCTGATCCGCCGA
GCGAGCTCTTCTTTTGCTTTTGATTGATGAAGTGCCGTGGTCACGCTCGTACTATTGATGCATTC
GTCTTTGTTGGAAAGAAAAAGGGGAGTTGGCTGCAAAAAAAGATGGAAAAGAACGATCGCGTAAT
ATCAATTTCTCGGCCTCGTCAGCGGCTTCCAATTGCTCGGAAATTCTCAGCAGTTATATAAGGGG
GGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAGATGGTA
AAAGAACGAGAGTTCGTGCGTCAGTTTATCAAACTTTTCATCGCCCTGCTCGAACGGAACGTGAT
GTAATCAAACTGATGGTTGACGCCGTAGAGAATATCAAGCCCATA
Found at i:330307 original size:17 final size:17
Alignment explanation
Indices: 330285--330329 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
330275 TTTGACTTGC
*
330285 GAGTGCTTTGAGCGATA
1 GAGTGCTTTGAGCGAGA
*
330302 GAGTGCTTTGAGTGAGA
1 GAGTGCTTTGAGCGAGA
330319 GAGTGCTTTGA
1 GAGTGCTTTGA
330330 CTTGCGTGCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.22, C:0.09, G:0.38, T:0.31
Consensus pattern (17 bp):
GAGTGCTTTGAGCGAGA
Left flanking sequence: Indices 329785 -- 330284
GCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCG
AGCGCTTTGTGTAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGCTGAC
TTGCGAGCGCTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACT
TAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGA
GCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATG
CAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACT
TAATGCAAAGCCTCGCGTGCGTATATTGCGAGTGCTTTGACTTGC
Right flanking sequence: Indices 330330 -- 330829
CTTGCGTGCGAGTGCTTTGTTGGATGAAAAAAGCAAAAGAGAAGGATGATCTTTTGCTTTTTCAT
CTGGGAACCTCTTCGAGAATATACCTACAATGAAAGAGGTATGTAATGGGGTGATGGCTCTGATC
CGCCGAGCGAGCTCTTCTTTTGCTTTTGATTGATGAAGTGCCGTGGTCACGCTCGTACTATTGAT
GCATTCGTCTTTGTTGGAAAGAAAAAGGGGAGTTGGCTGCAAAAAAAGATGGAAAAGAACGATCG
CGTAATATCAATTTCTCGGCCTCGTCAGCGGCTTCCAATTGCTCGGAAATTCTCAGCAGTTATAT
AAGGGGGGGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAG
ATGGTAAAAGAACGAGAGTTCGTGCGTCAGTTTATCAAACTTTTCATCGCCCTGCTCGAACGGAA
CGTGATGTAATCAAACTGATGGTTGACGCCGTAGAGAATATCAAG
Done.