Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_060361
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 335042
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
File 2 of 3
Found at i:107047 original size:20 final size:20
Alignment explanation
Indices: 107022--107095 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
107012 CCCTCGCGAC
107022 GTTGAGCTTTGCTCCCGAAG
1 GTTGAGCTTTGCTCCCGAAG
107042 GTTGAGCTTTGCTCCCGAAG
1 GTTGAGCTTTGCTCCCGAAG
*
107062 GTTGAGCTTTGCTCCCGACG
1 GTTGAGCTTTGCTCCCGAAG
*
107082 TTTGAGCTTTGCTC
1 GTTGAGCTTTGCTC
107096 GAATAATTGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.12, C:0.26, G:0.28, T:0.34
Consensus pattern (20 bp):
GTTGAGCTTTGCTCCCGAAG
Left flanking sequence: Indices 106522 -- 107021
GCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTC
GCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCG
CTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCA
CTCGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTT
GCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGAT
GCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGA
GTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGC
GACGTTTCACTTTGCTCGTTGAGCTTTGCTCGCGACCCTCGCGAC
Right flanking sequence: Indices 107096 -- 107595
GAATAATTGGATCAGGAGTTTTTCGAGAAAAGGTCCCATCCTTCCAACTCATGATTGGGTCGACC
TGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAAATATCATGATCGGGTCG
ACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAATAGAAAATCAAAAA
CGTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTACTAGGAGTAGCCTTT
TTAGTGCTAGCTGAACGTAAAGTCATGGCTTTTGTGCAACGTCGAAAGGGCCCTGATGTAGTGGG
ATTGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATGATAAAAGAACCTCTTTCCC
CAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTC
GCTTGGGCCGTTGTACCTTTTTCTTATGGTATGGTATTGTCAGAT
Found at i:107253 original size:68 final size:68
Alignment explanation
Indices: 107144--107276 Score: 257
Period size: 68 Copynumber: 2.0 Consensus size: 68
107134 TCCTTCCAAC
*
107144 TCATGATTGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAA
1 TCATGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAA
107209 ATA
66 ATA
107212 TCATGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAA
1 TCATGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAA
107277 TAGAAAATCA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (68 bp):
TCATGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAA
ATA
Left flanking sequence: Indices 106644 -- 107143
ACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
TCAAAGCACTCGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGC
GATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAG
CACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGC
TCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCT
TTGCTCGCGACGTTTCACTTTGCTCGTTGAGCTTTGCTCGCGACCCTCGCGACGTTGAGCTTTGC
TCCCGAAGGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGACGTTTGAGCTTTGCTCGAA
TAATTGGATCAGGAGTTTTTCGAGAAAAGGTCCCATCCTTCCAAC
Right flanking sequence: Indices 107277 -- 107776
TAGAAAATCAAAAACGTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTCATGGCTTTTGTGCAACGTCGAAAGGGC
CCTGATGTAGTGGGATTGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATGATAAA
AGAACCTCTTTCCCCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTTGGGCCGTTGTACCTTTTTCTTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATCTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGCAGGTCG
GTCTAGTAATTAGGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGGCCAATGGGTCAAAAATGG
GTTTGTGCCGCAGGTGTGGAACGATCTACTCTACACAGGTGTGGG
Found at i:108493 original size:49 final size:47
Alignment explanation
Indices: 108411--108683 Score: 236
Period size: 49 Copynumber: 6.2 Consensus size: 47
108401 GCTCGTTTGG
**
108411 GCTTTGCACAAAGTGAAA-CGCTCGCAAGTCAAAGCACTCTATCGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTC-A-CGCGAT
108459 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACT--CACGCGAT
**
108508 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTC--AG----CACGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCACGCGAT
108549 GCTTTGCA-T---T--AAGCGCTCGCAAGTC--AG----CACGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCACGCGAT
**
108584 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACT--CACGCGAT
*
108633 GCTTTGC----A--CAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
1 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTC-A-CGCGAT
108676 GCTTTGCA
1 GCTTTGCA
108684 CAAAGCGCTC
Statistics
Matches: 199, Mismatches: 6, Indels: 44
0.80 0.02 0.18
Matches are distributed among these distances:
35 33 0.17
36 1 0.01
37 1 0.01
39 1 0.01
40 1 0.01
41 32 0.16
42 1 0.01
43 38 0.19
45 1 0.01
47 2 0.01
48 16 0.08
49 70 0.35
50 1 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (47 bp):
GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCACGCGAT
Left flanking sequence: Indices 107911 -- 108410
TATAGCAACCTTATCACCGGCTGTTCTCCTTTGTCAACGCTACTAAAGCCCTATAGGTTCGCCTA
CTTGACTTCTGAAATAGAAGAAAGGTGGTTCCGGCGACGACCTTAGGAACCCTTCTCTTTCACTT
CGCTGTCGCTCGTTCGGGTCGAGAGTAGGCAACGAGCGTAGAGTGATCGTCTACACTCCACTACA
AGAGCCCCATTAGTGCGGTGCGGTGCGAGCGAGTTTGCGAAGACGTGACGGCTAATAGATAAGAG
AGCGTCGGTGCTACGCCTTCATTCTACTACGCTACGCAAAGGTGACTCACTTAGCTCGACGTTAG
GAGAGTGAAAGGGGAAGACCCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCAGACCG
ACACTCGCAACTTGAAAGGACTTGAAAGGAAAAAGCACTCGCACGCAAGTCAAAGCACTCGCAAT
ATCACACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGG
Right flanking sequence: Indices 108684 -- 109183
CAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGTTTTGCTTTGCTCCCGACGTTGA
GCTTTGCTCCCGACCCTTCCGTTTGGGCAAAGCACAAAATCAAGCACTCGCTTTTCAGTGCTCAT
GACGTTCGCTTCGCAAATTGAAAAGCCGCTTCGCACTACTGATAGACTACTTAAGATGCCAAAGG
CGCTACTGAGTTTCGCAAGCCTTTGTCAGTCAACTAAGTAGGGAGAAACCCCCTGCGAATCCGTC
AATCTGAGGAGCATGCCGAAAAAAGAAAAGGATGGTCCGGAACGGAAAAAAAAGATCATGGTGAA
CCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCCAGCCGGGAGGCGGATCGAAGCGGAGTTTC
CTTAGGTAGCCACCGACCTACAGTTATCCTTACACTTCCGTGCTTGGTGGAGAAGAAGCGAACAA
AGGTACGCTCGCTTGCTGTCTTGTTCTCTGCCGCGGACTGGGATC
Found at i:108556 original size:41 final size:41
Alignment explanation
Indices: 108499--108615 Score: 192
Period size: 35 Copynumber: 3.0 Consensus size: 41
108489 CAAAGCACTC
108499 GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
108540 GCACGCGATGCTTTGC----A-TT-AAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
108575 GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
108616 AAGCACTCGC
Statistics
Matches: 70, Mismatches: 0, Indels: 12
0.85 0.00 0.15
Matches are distributed among these distances:
35 32 0.46
36 2 0.03
37 1 0.01
39 1 0.01
40 2 0.03
41 32 0.46
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (41 bp):
GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
Left flanking sequence: Indices 107999 -- 108498
GGTGGTTCCGGCGACGACCTTAGGAACCCTTCTCTTTCACTTCGCTGTCGCTCGTTCGGGTCGAG
AGTAGGCAACGAGCGTAGAGTGATCGTCTACACTCCACTACAAGAGCCCCATTAGTGCGGTGCGG
TGCGAGCGAGTTTGCGAAGACGTGACGGCTAATAGATAAGAGAGCGTCGGTGCTACGCCTTCATT
CTACTACGCTACGCAAAGGTGACTCACTTAGCTCGACGTTAGGAGAGTGAAAGGGGAAGACCCTA
CATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCAGACCGACACTCGCAACTTGAAAGGACTT
GAAAGGAAAAAGCACTCGCACGCAAGTCAAAGCACTCGCAATATCACACTCAAAGCACTCGCACG
CAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCGCAAGTCAAAGCACTCTATC
GCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTC
Right flanking sequence: Indices 108616 -- 109115
AAGCACTCGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTT
GCACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGTTTTGCTTTGCTCCCGACGT
TGAGCTTTGCTCCCGACCCTTCCGTTTGGGCAAAGCACAAAATCAAGCACTCGCTTTTCAGTGCT
CATGACGTTCGCTTCGCAAATTGAAAAGCCGCTTCGCACTACTGATAGACTACTTAAGATGCCAA
AGGCGCTACTGAGTTTCGCAAGCCTTTGTCAGTCAACTAAGTAGGGAGAAACCCCCTGCGAATCC
GTCAATCTGAGGAGCATGCCGAAAAAAGAAAAGGATGGTCCGGAACGGAAAAAAAAGATCATGGT
GAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCCAGCCGGGAGGCGGATCGAAGCGGAGT
TTCCTTAGGTAGCCACCGACCTACAGTTATCCTTACACTTCCGTG
Found at i:108648 original size:43 final size:43
Alignment explanation
Indices: 108600--108698 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
108590 CATTAAGTTC
108600 AAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCACA
1 AAGCGCTCGCAAGTCAAAGCACTC-CATCGCGATGCTTTGCACA
*
108643 AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
1 AAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCACA
108686 AAGCGCTCGCAAG
1 AAGCGCTCGCAAG
108699 AGTGCTCGCG
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.17
Consensus pattern (43 bp):
AAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCACA
Left flanking sequence: Indices 108100 -- 108599
ACTACAAGAGCCCCATTAGTGCGGTGCGGTGCGAGCGAGTTTGCGAAGACGTGACGGCTAATAGA
TAAGAGAGCGTCGGTGCTACGCCTTCATTCTACTACGCTACGCAAAGGTGACTCACTTAGCTCGA
CGTTAGGAGAGTGAAAGGGGAAGACCCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTC
AGACCGACACTCGCAACTTGAAAGGACTTGAAAGGAAAAAGCACTCGCACGCAAGTCAAAGCACT
CGCAATATCACACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGT
GAAACGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
AAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTG
CATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTC
Right flanking sequence: Indices 108699 -- 109198
AGTGCTCGCGACGTTGAGCTTTGCTCGTTTTGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACC
CTTCCGTTTGGGCAAAGCACAAAATCAAGCACTCGCTTTTCAGTGCTCATGACGTTCGCTTCGCA
AATTGAAAAGCCGCTTCGCACTACTGATAGACTACTTAAGATGCCAAAGGCGCTACTGAGTTTCG
CAAGCCTTTGTCAGTCAACTAAGTAGGGAGAAACCCCCTGCGAATCCGTCAATCTGAGGAGCATG
CCGAAAAAAGAAAAGGATGGTCCGGAACGGAAAAAAAAGATCATGGTGAACCTCTCCTTGTGATC
GGGATGAGGTAGATGCCTCCCAGCCGGGAGGCGGATCGAAGCGGAGTTTCCTTAGGTAGCCACCG
ACCTACAGTTATCCTTACACTTCCGTGCTTGGTGGAGAAGAAGCGAACAAAGGTACGCTCGCTTG
CTGTCTTGTTCTCTGCCGCGGACTGGGATCGCTCGCCAGCTAGGT
Found at i:110385 original size:54 final size:48
Alignment explanation
Indices: 110240--110413 Score: 223
Period size: 43 Copynumber: 3.6 Consensus size: 48
110230 GCAAAGCTAT
110240 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
* *
110288 CTTGCGAGCGC-T---TT-GTGCAAAGCATCGCGCGCGAGTGCTTTGA
1 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
*
110331 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGA
1 CTTGCGAGCGC-TTAACTTAATGCAAAGCATCGCG-----TGCGAGTGCTTTGA
110385 CTTGCGAGCGCTTGAACTTAATGCAAAGC
1 CTTGCGAGCGCTT-AACTTAATGCAAAGC
110414 TCTCTTGCCT
Statistics
Matches: 109, Mismatches: 5, Indels: 18
0.83 0.04 0.14
Matches are distributed among these distances:
43 38 0.35
44 2 0.02
45 1 0.01
47 1 0.01
48 13 0.12
49 14 0.13
53 2 0.02
54 38 0.35
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (48 bp):
CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
Left flanking sequence: Indices 109740 -- 110239
AGAGTATATAACCAACCCACCCTTCTGTATAACCTATGAACGTGAAGCGGCTGGATGCAACAGGG
AAATGCACGTTTGTGAGGCCTGTTTCGGGATGCATAGGCAAAATAGGGGAGTACGCCTACGAGCA
CGGAAGAACGTGGGTACCACTGACTGTGCTCAGATTCTTAGCCCTGTTGATGACTCCATCTCAAA
TACAATAAGAGGATGGACCTTTTTCTAGTAGGCCTCCCTCCCGCCTTGTGATCATAGGATAAAAA
GGGAAGGCATGGAGAGAACCACCGAGAACGGATATGCCAGGAAGAAAAAAGGCGGATGAAGGGCT
ATCGGCGAGGGAATTGAAAGGCGAGGCCAGTCAGATTCCCCCAACGTCACCTTAGCAAAGCCCAA
AACTCGCAAAGTGAACCGAAGCCCTCGCTTTTCATTGCGTCTCACTCGCTTCGCTTGACTCCGTC
ACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 110414 -- 110913
TCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTG
TACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCGCTTTGCGTATAGAGTGCTTT
TTGCTTGCAACTGAGCCTAGAAGTAGCCTACCACGAGTCCATGACCTTCACCGCCTACCCGTACC
TGGCTACCTGACCAGAAGAAGAAAGACTTTTGTTAGCTTGACTTTCAAGTAGTCGTGAGTCGAGA
TGGTTCGAGATGGAAAGTGGAATCGCCAAGACGGTAAGGAACTGCACTGGAACGGAAAAGAGACT
CTATCACTAGCCCCGCCGCCGTTAAAGGAATTCTCTTTGATAAATCAACCTCGCCTGTAACTGCT
GACTTCACGGCTCTACTTGCTTGCTGCGGTTAGACACCAACAAAAAGATTCTCGTTTGAAGTCGC
AGGCTCAAACTCTCTCTCCTCTAGCTCCCGTACTGGAAAAAGTGC
Found at i:110450 original size:17 final size:18
Alignment explanation
Indices: 110428--110478 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
110418 TTGCCTTATA
*
110428 GTGCGAGTGCTTTGA-GT
1 GTGCGAGTGCTTTGATGC
110445 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA--TGC
110465 GTGCGAGTGCTTTG
1 GTGCGAGTGCTTTG
110479 TACGAGCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 15 0.50
20 15 0.50
ACGTcount: A:0.10, C:0.16, G:0.39, T:0.35
Consensus pattern (18 bp):
GTGCGAGTGCTTTGATGC
Left flanking sequence: Indices 109928 -- 110427
TCTCAAATACAATAAGAGGATGGACCTTTTTCTAGTAGGCCTCCCTCCCGCCTTGTGATCATAGG
ATAAAAAGGGAAGGCATGGAGAGAACCACCGAGAACGGATATGCCAGGAAGAAAAAAGGCGGATG
AAGGGCTATCGGCGAGGGAATTGAAAGGCGAGGCCAGTCAGATTCCCCCAACGTCACCTTAGCAA
AGCCCAAAACTCGCAAAGTGAACCGAAGCCCTCGCTTTTCATTGCGTCTCACTCGCTTCGCTTGA
CTCCGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTT
AACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGC
GCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTT
GACTTGCGAGCGCTTGAACTTAATGCAAAGCTCTCTTGCCTTATA
Right flanking sequence: Indices 110479 -- 110978
TACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCGCTTTGCGTATAGAGTGCTTT
TTGCTTGCAACTGAGCCTAGAAGTAGCCTACCACGAGTCCATGACCTTCACCGCCTACCCGTACC
TGGCTACCTGACCAGAAGAAGAAAGACTTTTGTTAGCTTGACTTTCAAGTAGTCGTGAGTCGAGA
TGGTTCGAGATGGAAAGTGGAATCGCCAAGACGGTAAGGAACTGCACTGGAACGGAAAAGAGACT
CTATCACTAGCCCCGCCGCCGTTAAAGGAATTCTCTTTGATAAATCAACCTCGCCTGTAACTGCT
GACTTCACGGCTCTACTTGCTTGCTGCGGTTAGACACCAACAAAAAGATTCTCGTTTGAAGTCGC
AGGCTCAAACTCTCTCTCCTCTAGCTCCCGTACTGGAAAAAGTGCCGGCTCTATCTTCTGTTCCA
CTCGGCCTCCTGAACTTACAGAATGAATTGACCACCTCTTTTCTT
Found at i:115529 original size:13 final size:13
Alignment explanation
Indices: 115511--115536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
115501 CTTTTTTTTT
115511 CATAGTACCATAA
1 CATAGTACCATAA
115524 CATAGTACCATAA
1 CATAGTACCATAA
115537 GATGCTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
CATAGTACCATAA
Left flanking sequence: Indices 115011 -- 115510
GCCGGTAATCTCCGTGCAGAACTTCTTCGATTTGATAGACGCCAAAGCGTCTGAGAACCTGGCTG
CCTTTTAATACCAGACCAACCCACTGAAATGCAAATGGGGACCAGAAATGTAGTCAATGCTCAAG
CCGGTTGACTTTCTTTTGGACCTCCTTGGCTTCCTTCCCCTCTTTCTTTGGTTGAATTTTGCATA
TTTATCAGACTATGTTAGGTTGGCGATCGAAACTCACATCAAACCTTGCTTTTGGCAGTGTGACG
TTTTGAAGGAAGGCTATGAGCAAATTTCGGAGTGGTTTCTGATAAACCCGTTCTTCGCTGTCCGC
AGTTGGATTCGTCGAACAACCGTTCGAAAGAGTCGAAAGTGGCCTATTGAACAGAACTCCGGAAA
GAAAGAGTGAGTTATATGCTCGTAAAGGCGTGCCACTCAAAAAGCAGACTCCATCGTCCTCTCGA
GGATTCGGATCAAAGTCTTGCGGCTTGGCCATTGCCTTTTTTTTT
Right flanking sequence: Indices 115537 -- 116036
GATGCTTAAATGTCACTTTTCTAGTAGGATCCGACCTATCTTAAATATAATAGGTGTTCGCTTTT
CCATTTGAAAAACCACTTTTTGCTCCTATCCTAGTAAGCAGGGACCATTATCGGAAACAATGTCC
CTTGGCACTCCGAAGCGGCAAACGATGTTTTTGTGAGGCTAGGCGTTTCTTTGAAGGCTTGGGCC
TTCACCGCTCATGGTCTTCCTACTCCGATCTCGCTGCGGGTTCCCCACCTTGAATATGGATAGAT
AGCCTTGAAATTGAATTGGAATCGGAAGGAGATGAGAATCTCCCGACGTCCGATAGTTCTCTTCT
TGTCCCCGCCCCCAACCAACTAGCAGAGCAGATGGGGAATCGGTTTGCACAAAGACCTCGATCGC
ACCAGACTCGATTGCACCGGGCAACAATGAAGACCTCTGGCATCGGATATCCCAGGCCATGGTAA
TTGACTCAAATAGCTTCGTTTCCAGCTTGGGCGGACAAAATGAGC
Found at i:122580 original size:30 final size:29
Alignment explanation
Indices: 122546--122616 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
122536 GTAGTGGGTA
*
122546 AGTCAGTC-ATGCCTGCCTTCCCTATCGGTC
1 AGTCAGTCAATCCCT-CCTTCCCT-TCGGTC
122576 AGTCAGTCAATCCCTCCTTCCCTTCGGTC
1 AGTCAGTCAATCCCTCCTTCCCTTCGGTC
*
122605 AGTCAGTGAATC
1 AGTCAGTCAATC
122617 ATATCTTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
29 17 0.45
30 16 0.42
31 5 0.13
ACGTcount: A:0.17, C:0.35, G:0.18, T:0.30
Consensus pattern (29 bp):
AGTCAGTCAATCCCTCCTTCCCTTCGGTC
Left flanking sequence: Indices 122046 -- 122545
CACGGGGAGAAGCGGCCCCCAGAAAAAGAAGGGGAAAAGGATAAGGAGCCAGATGAGCTCCGGGA
GGCCATTCGTAAATGCATACAGCGCTTCTTGCCTGCGTATTGTTCCAACCGTGGTACGGGGATTT
ATGCAAAATCTGATGACTGACGAGGCTTGCTGCCGCGCATGAAATAGCGGAAAACCACTGATACT
ACGAGGATCCGACAACGGATCAACAAGGGCTTGTTTCCTTTGTCCCTCCGGGATAATAGTAGACC
GGAGAGCGACGAGTGGAAGAATGGAATGAAAATGGCATTTATGCAAAAAAACGTGTTGAGATGAG
GGACGGAAGGTAGGAAATGGGCAGGGCTCGCTATAGTCATGCTATGCCGGTAAGAGTGTCCCTTC
GGTGACATTGACCTTTAGTAGCCTAAAGGCTCCCGATCATCCGTTGTTGCCTTCAACGGTGGAGG
GAGCTCCTGCTCCCGAGTCAGTAAGCAAGCTAGTGGTAGTGGGTA
Right flanking sequence: Indices 122617 -- 123116
ATATCTTCGGTGTGTGATCAAAGCACTCGCAACGTCGAAATTGCTTAAGCTTTGTGGGTCCGGTT
CACTTTGCGAGTTTTGGGCTTTGCTCATGACGTTGGAGCGGATTTCAAAACCAACGACGATCCTA
TCCTAAAGGATCTGGAGGAGTAGGAGGAGTCAGTCTTCTTTGGAGATCGAGGATCTGAAAGAGCG
GACAATTATGCCATTCGGAATCAGTCTTCTACAGAGGGAAAGCCTGTTACGAGTAAGCGGAGAGG
AAAGATCTCCAGAGATTCTTATCTCATTCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAA
CTCAAAAATCCATGGTTTCCCGGTAGAAGTAGCACCCCATTTCGACCAACCAAAAAGAAGCGGTT
TTTTGCACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATCGAAAGCCGAAGAAGCATCGTACA
GGTTGGAGTTCCTACCTTCTTGGGACTCCATGGACCAAGATCTGC
Found at i:127835 original size:19 final size:19
Alignment explanation
Indices: 127813--127872 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 19
127803 GCTCGTTTAG
127813 CTTTGCTCGCGACGTTTCA
1 CTTTGCTCGCGACGTTTCA
127832 CTTTGCTCGCGACCCTTCCGTTTCA
1 CTTTGCTCGCGA------CGTTTCA
127857 CTTTGCTCGCGACGTT
1 CTTTGCTCGCGACGTT
127873 GAGCTTTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
19 16 0.46
25 19 0.54
ACGTcount: A:0.08, C:0.35, G:0.20, T:0.37
Consensus pattern (19 bp):
CTTTGCTCGCGACGTTTCA
Left flanking sequence: Indices 127313 -- 127812
CAAGTTGGGTGCTCTCCCTTAACGTGGTAGGCTCTGTTGCAGGTCTTGACGTTGACTGATTCAAA
AAGGCATCCTCGTCGAAGGAAAGTATGGTCTCCCTCAAAGCCCCTTATCGAGACACTCTTTCTTA
GTCCCTTTGCCTTCTCCTTTTCGATGCCATCTCTTTTTTCCCCTTCCTCTATCAAAGAAAAGAGC
GGCTATTCACCATCAGGAAAGACAGTAAGCCAAGGAAAGGAAGAACTGAACTTCTAAGCTGGCAT
AAGGGATGAAAAACCAAAAGCACTAGGAAGAGAATGCAAGTTGGGAAGGATGAACCTGATTGAAA
GGAAAGCAAGGCCTGATGGCTTATGGAATTGATGCTTTCCAGCACAAAGCGCTCGCAAGTCAAAG
CACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTA
AGTTCAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTTTAG
Right flanking sequence: Indices 127873 -- 128372
GAGCTTTGCTCGTTTAGCTTTGCTCCTTCTCGTAGCATTTTCTATACGTTCACATAAGTGAATAG
AAAGTGAGTGAGCTAATATAATTTTGCATTTTTGAGTCAGTGGCTTGGCAAGGAAATGGGTACAG
GACCCCAACCATGTCAGACCCATTGCTCAACCTATTTGGGATCCTCATTTTGGTCAACCGGCTGT
AGAAGCTTTGACTCGAGGGGGTGCTCTCGGCCCAGTTCATATTGCTTATTCCGGTCTTTCTCAGT
GGTGGTATACAATCGGCTTGCGCACCAACGAAGATCTGTCTACTGCTTTTTCTATTATTTCTTTC
TGCAATATCTGTCTCCGCGGGTTGGTTACAACCCAAATGGAAGCCATGGTTCAAAAATGCCGAAT
CTCGTCTCAATCATCATTTGTCAGGGCTCTTCGGAGTCAGCTCCTTGGCTTGGGCAGGACATGTC
GTTCATGTCGCTATTCCCGGATCAAGGGGTGAGTCAGATGGAAGA
Found at i:129567 original size:16 final size:16
Alignment explanation
Indices: 129546--129576 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
129536 TTCAGCCAGG
129546 AAGATAGTTTGAAGTC
1 AAGATAGTTTGAAGTC
129562 AAGATAGTTTGAAGT
1 AAGATAGTTTGAAGT
129577 GAAGCTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.26, T:0.32
Consensus pattern (16 bp):
AAGATAGTTTGAAGTC
Left flanking sequence: Indices 129046 -- 129545
GGCTAGCTTGTTCCTGGGGTTCCATACCTTGGGACTCGCAGTTCATAATGACGTCATGCTTGCTT
TTGGTACTCCAGAAAAATGGCGATGGATCGAACCCTTGCCCAATGGATACAGTCCGCTCATGGTC
AGACTCCATATGGGTTCGATGTACTCTGATCTTCCACGAATGGCCCAGCATTTCATGCTGGTCAA
AGCTGATGGTTACCTGGCTGGTTTCATGCTATTAATGAAAATCGTCATTCACTATGATTAACAAT
AGGGCCCGGGGACTGATTGGTACATCATGCTATTGCTGACGGTTTGCATACAACTACGTTGATCT
TAGTCAAAGGTGCCTTTAGATGCACGTGCTTCCTTTTTCATGCCAGATCACAAATCTGTCGGGTA
TAGCCCTGCGATGGTCCAGGGCGAGGTAGTACTTGTGAGATTTCGGCTTGGGACTTTCTTTGGCA
GTTTGATGGAAGGGTTATTCTTATTATGGCTGGTTTTCAGCCAGG
Right flanking sequence: Indices 129577 -- 130076
GAAGCTTTTTTATTGAGGCATGTTGGATTGAGAAAAAAGGATTCCCTCCATAAAAGCCAGAGATA
GATAAAGAAATTCCCTGAATGAAAAAAGACTGACTTGTTGGAAGTAGCCTGTAAGAGTAAGGGTA
ATGTTTCGCAATTTCATTCATCTTCCACTTCAAAGATGGGATGGCATATTCACTTATTTCACACA
ATTCTTCTGGTCATGCCTTCTCCTCTTTACTTTTTATATATGTTGGATTGAGAAAAAAGGATTCC
CTCCATAAAAGCCAGAGATAGAAGTGGATTGACTGCTGTTATTGTTCTTGACGAAGCTCCCGGTG
TCAGATATCAACCCTTGAGTTTTGGTATTCTTCCGTCTGGGCGATTTGGGCATTTTGGGCTACTG
GATGAATGTTCTTAATTGCGTGGATATTGGCAGGAATTGATGGAAACTGACGCATGGGCTCATGA
ACGCACACCTTTGGCTTTCTTCGCTGGAGGGAGAAACCGGCTTTC
Found at i:130602 original size:15 final size:15
Alignment explanation
Indices: 130584--130619 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
130574 TGCTGGACTA
*
130584 CTGCTTGCTGAACCC
1 CTGCTTGCCGAACCC
130599 CTGCTTGCCGAACCC
1 CTGCTTGCCGAACCC
*
130614 CAGCTT
1 CTGCTT
130620 ACCTGACTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.42, G:0.19, T:0.25
Consensus pattern (15 bp):
CTGCTTGCCGAACCC
Left flanking sequence: Indices 130084 -- 130583
CAAGCAAGATTGGTTGGCTTAGCTCACTTTTCTGTAGGTTAACTATTGACCTACGCAGCTTTCTT
GATTGCTTCTACATCGGGCTTGGTTTAGTTTCTTCTTTCTTTGAAAAACGAAGGTCATTCTCATT
GACGCTTTCGATGGATGCGCCTTCATACCCCCCCTATAATACATGACGGATCCGATCTGTATAGA
AAACGCCTTGTAATAATGCTTGTTAGGCTTAGATCTCGGAAATGATCGACTTCAAACAAAACAAA
TAGATGCGTAAGTAAGAATACTATATACTTAGGTAACTCCAAATGCAAAAAATGACATCTCGTAA
GTAACCGCCATAAGAAAAGAAGGAAAGAGAGATTGAATACAAAAAAATCAAGCTAGTGTCCTTGT
TCAAAGCAAGTGTGAAATCTCATTCTCATGAATCTGTGTCTAAATTCTTCATCCTTTCATTTCTG
CCAACGGCCCTGAATGGATATTCATTGAAGACCTCTGCTGGACTA
Right flanking sequence: Indices 130620 -- 131119
ACCTGACTACCTCCTCCAGACTCGGACTACCTCTTCCAGACTCGACTCATTAGTGCAATAGTCCT
CTTCCTATTTCGAGGATATCTATCTTTTTTTCCTATACTATATTGTGGTGGTTTGTGAAGAAATT
CTTTGTTGACGTGGCTATCAAGTCAACTCCACACACTCATTTCTTCCTGCGACCGACAGGTAGTT
CTGCTTCTCCATCGGATAAGTTCATTTGCTTAACACACCCGACGGGTGCTGTCAGTTTCCTGGTG
AGTGAGAGGTTTTGGAAGGATGAAGTCAGGACTGGGAATCGCATGGCCCCTGACTTCATTAGTCT
AAAAACAGACTCGAATGACCATCGAGAAACCTGAGAGGCACTTTGAGTTTTGTGCAGCTAACCCA
CGTCAAAGCAAAGACTGACGTCACAAAAAAAGACAGAGTCACACTCAAAGCGCTCGCAAAGCTTT
GCTCGTAGGCAGTTTTTTTGTCTAGAACTAACTAAACTAACTAGT
Found at i:130649 original size:20 final size:20
Alignment explanation
Indices: 130624--130663 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
130614 CAGCTTACCT
130624 GACTACCTCCTCCAGACTCG
1 GACTACCTCCTCCAGACTCG
*
130644 GACTACCTCTTCCAGACTCG
1 GACTACCTCCTCCAGACTCG
130664 ACTCATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.42, G:0.15, T:0.23
Consensus pattern (20 bp):
GACTACCTCCTCCAGACTCG
Left flanking sequence: Indices 130124 -- 130623
AACTATTGACCTACGCAGCTTTCTTGATTGCTTCTACATCGGGCTTGGTTTAGTTTCTTCTTTCT
TTGAAAAACGAAGGTCATTCTCATTGACGCTTTCGATGGATGCGCCTTCATACCCCCCCTATAAT
ACATGACGGATCCGATCTGTATAGAAAACGCCTTGTAATAATGCTTGTTAGGCTTAGATCTCGGA
AATGATCGACTTCAAACAAAACAAATAGATGCGTAAGTAAGAATACTATATACTTAGGTAACTCC
AAATGCAAAAAATGACATCTCGTAAGTAACCGCCATAAGAAAAGAAGGAAAGAGAGATTGAATAC
AAAAAAATCAAGCTAGTGTCCTTGTTCAAAGCAAGTGTGAAATCTCATTCTCATGAATCTGTGTC
TAAATTCTTCATCCTTTCATTTCTGCCAACGGCCCTGAATGGATATTCATTGAAGACCTCTGCTG
GACTACTGCTTGCTGAACCCCTGCTTGCCGAACCCCAGCTTACCT
Right flanking sequence: Indices 130664 -- 131163
ACTCATTAGTGCAATAGTCCTCTTCCTATTTCGAGGATATCTATCTTTTTTTCCTATACTATATT
GTGGTGGTTTGTGAAGAAATTCTTTGTTGACGTGGCTATCAAGTCAACTCCACACACTCATTTCT
TCCTGCGACCGACAGGTAGTTCTGCTTCTCCATCGGATAAGTTCATTTGCTTAACACACCCGACG
GGTGCTGTCAGTTTCCTGGTGAGTGAGAGGTTTTGGAAGGATGAAGTCAGGACTGGGAATCGCAT
GGCCCCTGACTTCATTAGTCTAAAAACAGACTCGAATGACCATCGAGAAACCTGAGAGGCACTTT
GAGTTTTGTGCAGCTAACCCACGTCAAAGCAAAGACTGACGTCACAAAAAAAGACAGAGTCACAC
TCAAAGCGCTCGCAAAGCTTTGCTCGTAGGCAGTTTTTTTGTCTAGAACTAACTAAACTAACTAG
TGGTTCAATAGTCAAACAAAGGTCGGGCCTGACAAAAAGGCCCGT
Found at i:134323 original size:19 final size:19
Alignment explanation
Indices: 134301--134360 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 19
134291 GCTCGTTTAG
134301 CTTTGCTCGCGACGTTTCA
1 CTTTGCTCGCGACGTTTCA
134320 CTTTGCTCGCGACCCTTCCGTTTCA
1 CTTTGCTCGCGA------CGTTTCA
134345 CTTTGCTCGCGACGTT
1 CTTTGCTCGCGACGTT
134361 GAGCTTTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
19 16 0.46
25 19 0.54
ACGTcount: A:0.08, C:0.35, G:0.20, T:0.37
Consensus pattern (19 bp):
CTTTGCTCGCGACGTTTCA
Left flanking sequence: Indices 133801 -- 134300
CTTGTTGGTTTATGGATTGGATGAAGTCAGCCTCACTCCTTCCTTCCAGTCGTGAGGCTGCGGGT
TGACAGTGGGCTTAGACGTTGATACGCGTGCCTATTTGACCGCAGCTACCATGATCAACAAAGGA
AAAGTGACGGTTTGGTTACCGGCGAACGCTTCCAAAGGGCGACCTCTCGTGTTTCCGGCTCTCTC
CGTCATGGAAGTAGCCTTTCCTTTAGTCGCCCTACCCTAAGAAGTCACTCACTATCAAACAGCTC
GCCCTACGGAAGTACCAAAGGTGCGCTCCGCCTAGCAGCGAGTGTAGCCTACAACTCATAGTCAA
GGCTTTTTTTGTGTGACATGTTGATCAAAGCACTCGCAACTTTTCATTGCGTTAGGGAACTCGCA
ACTTGAAAGGACTTGAAAGGAAAAAGCACTCGCACGCAAGTCAAAGCACTCTATCGCGATGCTTT
GCACAAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTTTAG
Right flanking sequence: Indices 134361 -- 134860
GAGCTTTGCTCCCTTCTGTTGAGCTTTGCTCCCGACGAATAACTGGGCAAAGCACAAAATCAAGC
ACTCGCTTTTCAGTGCTCATGACGTTGGTTGCGTCGAAAGCGAAGCTACATAAACAAAAGAGGTG
ACTAATGAATTGGCGAAGGAAGGAGGGCATTGATTGACAAAACAAAAGAATGTAAGTGAAGAGAA
TAGAAGCCCTTAGCCTTTTCTATATCTTTCTATTAATATTGGTTTCCAAATCATTCTCAAAGCTA
CCCCTACGACTTTGATTCAAAGGGCGAACAGCCCCCCCCGTCGTTTCGTATGGGGTGGGGTGCTG
CTTGTGGTAAGCTGCGTGGATCTTCTTTCTTCCTATAAATCCCAACGGTATTTGACATCTTTCTA
TCAATAGAAAGGAATGAGTGTTCTGGGGATCTCTATAGAATTTGAGATCTATTGTAATGAAAGGA
GAGAAAAACAAAGCAATGCCAACAGAGTCAATCCGCTGTTCATCG
Found at i:134367 original size:19 final size:19
Alignment explanation
Indices: 134345--134397 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
134335 TTCCGTTTCA
*
134345 CTTTGCTCGCGACGTTGAG
1 CTTTGCTCCCGACGTTGAG
**
134364 CTTTGCTCCCTTCTGTTGAG
1 CTTTGCTCCCGAC-GTTGAG
134384 CTTTGCTCCCGACG
1 CTTTGCTCCCGACG
134398 AATAACTGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.08, C:0.32, G:0.25, T:0.36
Consensus pattern (19 bp):
CTTTGCTCCCGACGTTGAG
Left flanking sequence: Indices 133845 -- 134344
TCCAGTCGTGAGGCTGCGGGTTGACAGTGGGCTTAGACGTTGATACGCGTGCCTATTTGACCGCA
GCTACCATGATCAACAAAGGAAAAGTGACGGTTTGGTTACCGGCGAACGCTTCCAAAGGGCGACC
TCTCGTGTTTCCGGCTCTCTCCGTCATGGAAGTAGCCTTTCCTTTAGTCGCCCTACCCTAAGAAG
TCACTCACTATCAAACAGCTCGCCCTACGGAAGTACCAAAGGTGCGCTCCGCCTAGCAGCGAGTG
TAGCCTACAACTCATAGTCAAGGCTTTTTTTGTGTGACATGTTGATCAAAGCACTCGCAACTTTT
CATTGCGTTAGGGAACTCGCAACTTGAAAGGACTTGAAAGGAAAAAGCACTCGCACGCAAGTCAA
AGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTTTA
GCTTTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCGTTTCA
Right flanking sequence: Indices 134398 -- 134897
AATAACTGGGCAAAGCACAAAATCAAGCACTCGCTTTTCAGTGCTCATGACGTTGGTTGCGTCGA
AAGCGAAGCTACATAAACAAAAGAGGTGACTAATGAATTGGCGAAGGAAGGAGGGCATTGATTGA
CAAAACAAAAGAATGTAAGTGAAGAGAATAGAAGCCCTTAGCCTTTTCTATATCTTTCTATTAAT
ATTGGTTTCCAAATCATTCTCAAAGCTACCCCTACGACTTTGATTCAAAGGGCGAACAGCCCCCC
CCGTCGTTTCGTATGGGGTGGGGTGCTGCTTGTGGTAAGCTGCGTGGATCTTCTTTCTTCCTATA
AATCCCAACGGTATTTGACATCTTTCTATCAATAGAAAGGAATGAGTGTTCTGGGGATCTCTATA
GAATTTGAGATCTATTGTAATGAAAGGAGAGAAAAACAAAGCAATGCCAACAGAGTCAATCCGCT
GTTCATCGATAGACGAAAGGTGCAGTTGAAAGTGCATTTTCTCTT
Found at i:138325 original size:57 final size:54
Alignment explanation
Indices: 138255--138385 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
138245 AGTCAAAGCA
* * * *
138255 CTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAG-TGAAACG
1 CTCGCA-AGTCAAAGCACTCGCAATAT-ACGC--GAG-GCTTTGCACAAAGTTCAAACG
** *
138313 CTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCATTAAGTTCAAGCG
1 CTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCACAAAGTTCAAACG
138367 CTCGCAAGTCAAAGCACTC
1 CTCGCAAGTCAAAGCACTC
138386 TATCGCGATG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
53 11 0.17
54 27 0.42
56 3 0.05
57 18 0.28
58 6 0.09
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (54 bp):
CTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCACAAAGTTCAAACG
Left flanking sequence: Indices 137755 -- 138254
CGAGAAGCACTGTTGAGAGGAAGATCCCTTGCCCCTCTTCATTCTCTACAGGAGTCTCTGCCCAC
ATGGAAGCGGGGCAAAGATGGAAGAGAAGGTAGCTTGCTTACCAAGCTTTCGGCCGGCCTCAAAA
TGACTCTATGTTAGCTATAGCCGCCTACTTATAGTATAACGCACGCAAGCCTACTTATTCACACT
TCTAATGAGGGGCGGGCCGGCGAGCACCATTAAGTGAACCGCACGGATAGCTGATAGAGTTCACC
CTTGCTCCACCCCCTAGCTCGTTCTTCATCGGATTCCGTCTCGCGGTTTCTTTCCACTCATCGGA
TGATGACGTTCCGCACTTCTCGCTGTCGCTCTTTTCTCTATGGCACTCGCTGTCGCTTCGACGTC
AAAGCACTCGCAAAGCTTTGCGTGAGGGCAAAGCACACTCGCAAAGCTTTGGCTTTGCACAAAGC
ACGCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAGTCAAAGCA
Right flanking sequence: Indices 138386 -- 138885
TATCGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCG
CTCGCTTGAGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGCGACCC
TTCCATCAATTGACGTGACGTGACGTTCCCTTAAGCAATTTCGACGTTGCGAGTGCTTTTCTCAC
TGCCCACTTCTAGCTTCTCTTCTATAGTGGCCCTTAAAGCCTTTGGTGTAGTTTAACATTGGTCT
TATGAACCGCAAGCCCCACACTCCAGAAAGAGTACCTTATGTATGGAGTAATATGGATGGAGTCA
GCCTCACTCCGAGTTTCGCTGACTTGGATGAAGTCAGCCTCACTCCTTCCTTCCAGTCGTGACGG
TGGCTTTTCTTTTCTTTTTTCTTTTTTTGAGTCAACGACAAAGGAGTTTCCAAAGGCGAACTGCC
CCCTCCCCTTCTATCAAAAAAAACAGATAGTCAAAAGTCAACCAA
Found at i:138484 original size:19 final size:20
Alignment explanation
Indices: 138460--138513 Score: 85
Period size: 19 Copynumber: 2.8 Consensus size: 20
138450 GCTCGCTTGA
138460 GAGCTTTGCTCGCGACG-TT
1 GAGCTTTGCTCGCGACGTTT
138479 GAGCTTTGCTCGCGACGTTT
1 GAGCTTTGCTCGCGACGTTT
*
138499 CA-CTTTGCTCGCGAC
1 GAGCTTTGCTCGCGAC
138514 CCTTCCATCA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 30 0.91
20 3 0.09
ACGTcount: A:0.11, C:0.30, G:0.28, T:0.31
Consensus pattern (20 bp):
GAGCTTTGCTCGCGACGTTT
Left flanking sequence: Indices 137960 -- 138459
GGCGGGCCGGCGAGCACCATTAAGTGAACCGCACGGATAGCTGATAGAGTTCACCCTTGCTCCAC
CCCCTAGCTCGTTCTTCATCGGATTCCGTCTCGCGGTTTCTTTCCACTCATCGGATGATGACGTT
CCGCACTTCTCGCTGTCGCTCTTTTCTCTATGGCACTCGCTGTCGCTTCGACGTCAAAGCACTCG
CAAAGCTTTGCGTGAGGGCAAAGCACACTCGCAAAGCTTTGGCTTTGCACAAAGCACGCACTCGC
AAAGCGTGAAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAG
GCAAGAGAGCTTTGCACAAAGTGAAACGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTT
TGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCTTGA
Right flanking sequence: Indices 138514 -- 139013
CCTTCCATCAATTGACGTGACGTGACGTTCCCTTAAGCAATTTCGACGTTGCGAGTGCTTTTCTC
ACTGCCCACTTCTAGCTTCTCTTCTATAGTGGCCCTTAAAGCCTTTGGTGTAGTTTAACATTGGT
CTTATGAACCGCAAGCCCCACACTCCAGAAAGAGTACCTTATGTATGGAGTAATATGGATGGAGT
CAGCCTCACTCCGAGTTTCGCTGACTTGGATGAAGTCAGCCTCACTCCTTCCTTCCAGTCGTGAC
GGTGGCTTTTCTTTTCTTTTTTCTTTTTTTGAGTCAACGACAAAGGAGTTTCCAAAGGCGAACTG
CCCCCTCCCCTTCTATCAAAAAAAACAGATAGTCAAAAGTCAACCAAACCGTCACTTTTCCAAAG
GTTACCGAAGGAATGAAAGTAGCGACGAAAGGAGCCTCCTTTGATTCATTCTATGTCCTGCCCTC
GGTACCGGATGGTGCTGGAGGACTCTCTTTTGCCGGTCTTTCTAT
Found at i:142337 original size:19 final size:19
Alignment explanation
Indices: 142313--142370 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
142303 GGTCGGGAGG
*
142313 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTAAAC
142332 GTCGCGAGCAAAG-TGAAAC
1 GTCGCGAGCAAAGCT-AAAC
142351 GTCGCGAGCAAAGCTAAAC
1 GTCGCGAGCAAAGCTAAAC
142370 G
1 G
142371 AGCAAAGCGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 1 0.03
19 34 0.94
20 1 0.03
ACGTcount: A:0.34, C:0.26, G:0.29, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTAAAC
Left flanking sequence: Indices 141813 -- 142312
GGCATCAGCTTAGTTAGTTTGCTCTTTCTTTAGTTGCCTATCCTGGTCTGCTAGTTCCTCTCTTT
GATGCTAAGGTTTTTGATTCCTCGCTTGAACTGGAATGAAGTGAAGAAGGTCCCCTTCAAGCGCG
ATGATAGTCAGTCTTCCGTTTTTTACGATGCCATCTTTATGAGACCAGACCGGAACGTGAACGTC
TCTGCCAGTATTGCTGATACAGGGGTGGTTCCATGCATGACTTGACTGAAAAGATCCACCACTCT
ATCTAACATCCACATAACCCAAGGCTTTGGGGAAGAGTACTAACCCATAGATCGCCAGTGCCATA
ATTTGCATGCCTGCATCATCGTCTGGGTGCTGTTCAACAAAGGTCTGCAGGAATTCCGAGGATAC
ACATTGCCCCTGACACCTTTCTTTCTCCTATTGCTACTGCTATTGATACTGATACTGCTTCCTGC
TATTTCTTTTGTGGCAACCTTCCAACTTTTCGAAGGGTCGGGAGG
Right flanking sequence: Indices 142371 -- 142870
AGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGTGCGAGTGCTTTGACCTTCTGTGATCGTCAATTTAGTTCAGTGAGTGGTCAATGT
TGATGGAGGACTGCGAGATCTTTCTCCTGTTTCTCTTCAAACTCTTCTCCTTAGTCCTTTTGGCC
TGATGGCTATTCAAGAAAAGTACAATGTTCGAAGATTTTCGACATTGGCTCGTATTGGTGGGTTA
TAGGACTTTTTTCTCTTTAGCTTCTAGACCATCCCGTAGATGGGAGCGGTTGAGGGTGATGTCAG
AGAAAAAACATAGTGGTCAAAGTTCTCTACTAGAGTTTTGGCTCTGCAGGGGTTATCCCTGTGGT
CCATACTGAAAAGGCTTCCTTGTCTTCTGCATTTTCAGTCAGCACTATAGCCCCAATCCTGCGGA
TTTCCACTTTGATGGAGAGATCGAGATTCTTTCAAGTAGGAACTG
Found at i:143948 original size:20 final size:20
Alignment explanation
Indices: 143925--144013 Score: 148
Period size: 20 Copynumber: 4.6 Consensus size: 20
143915 CAAAGCGTGA
143925 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
143945 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
*
143965 AAAGCACTCGCA--C-ACTC
1 AAAGCACTCGCACGCAAGTC
143982 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
144002 AAAGCACTCGCA
1 AAAGCACTCGCA
144014 ATATACGCGA
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.23
18 1 0.02
19 1 0.02
20 47 0.73
ACGTcount: A:0.36, C:0.36, G:0.18, T:0.10
Consensus pattern (20 bp):
AAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 143425 -- 143924
CCGAGTGGTACTATCGGTTGTGGGTGGTATTCTTCCGGGTGGTCAAGTTATGTCTAGTTCAACCA
CAGCTTTTATCGAGAATAGTCCACCCAGCGGGAAAGCGAGAAGAGGCCTATATTTCGGAGTGCGT
TAGTGGCTCCTCTGTAGGTTTGAGCAAAGAAGTCGGAAGCTCGAAAGCAAGAAGTGTAGGTCGAC
CATCATCTGGAGAGGAAGCGGGAGCATGACTCGTATCAAGAGCAAAAGAGGGGCCTCACTCGTCT
CGAGAGAGGAGTTCATCTGCTGCGAAAAAACCACTCCGATAAAGCCCTCTACAGGATGACCTTGC
TTTCCTTAAACCCTCATTTGACTACCAGAAAGAGGAAAGAGCTTCAAGCGAGAGATCTTGACGTC
AATTGATGAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCA
CTCGCAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 144014 -- 144513
ATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTG
CACAAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCGTTGAGCTTTG
CTCGCGACCCTTCTGTTGAGCTTTGCTCCCGACCCTTCCGTTTGGGCTTTGGTCCGAATAGAAAA
AAAGAAAAAAGAGATTGAACTCTTTTGTTTCAGTTCAGTACGACCCGTAGTGACATATGAAATAG
CTGATGGGATCAATCTGGAGGTATCCATTTTCCTGGAGAAACAGATAAGATATCCCGACACATTG
GCATCTTGATACCACCAGGAGCAAGAGTAATGAAAAAAATGGATAAGGGGGAAGGGCTAAATTTT
GTCTATGTCCAACGGATCACACCTATCAAGAACAAATCTTTTGTTTCAGTACGACCCGTAGTGAC
ATATGAAATAGCTGATGGGATCAATCTAGTAACGCTTTTCCCTGG
Found at i:143993 original size:37 final size:39
Alignment explanation
Indices: 143925--144013 Score: 146
Period size: 37 Copynumber: 2.3 Consensus size: 39
143915 CAAAGCGTGA
*
143925 AAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCAC-CAACTCAAAGCACTCGCACGCAAGTC
143965 AAAGCACTCGCA-C-ACTCAAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACCAACTCAAAGCACTCGCACGCAAGTC
144002 AAAGCACTCGCA
1 AAAGCACTCGCA
144014 ATATACGCGA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
37 35 0.73
38 1 0.02
40 12 0.25
ACGTcount: A:0.36, C:0.36, G:0.18, T:0.10
Consensus pattern (39 bp):
AAAGCACTCGCACCAACTCAAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 143425 -- 143924
CCGAGTGGTACTATCGGTTGTGGGTGGTATTCTTCCGGGTGGTCAAGTTATGTCTAGTTCAACCA
CAGCTTTTATCGAGAATAGTCCACCCAGCGGGAAAGCGAGAAGAGGCCTATATTTCGGAGTGCGT
TAGTGGCTCCTCTGTAGGTTTGAGCAAAGAAGTCGGAAGCTCGAAAGCAAGAAGTGTAGGTCGAC
CATCATCTGGAGAGGAAGCGGGAGCATGACTCGTATCAAGAGCAAAAGAGGGGCCTCACTCGTCT
CGAGAGAGGAGTTCATCTGCTGCGAAAAAACCACTCCGATAAAGCCCTCTACAGGATGACCTTGC
TTTCCTTAAACCCTCATTTGACTACCAGAAAGAGGAAAGAGCTTCAAGCGAGAGATCTTGACGTC
AATTGATGAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCA
CTCGCAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 144014 -- 144513
ATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTG
CACAAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCGTTGAGCTTTG
CTCGCGACCCTTCTGTTGAGCTTTGCTCCCGACCCTTCCGTTTGGGCTTTGGTCCGAATAGAAAA
AAAGAAAAAAGAGATTGAACTCTTTTGTTTCAGTTCAGTACGACCCGTAGTGACATATGAAATAG
CTGATGGGATCAATCTGGAGGTATCCATTTTCCTGGAGAAACAGATAAGATATCCCGACACATTG
GCATCTTGATACCACCAGGAGCAAGAGTAATGAAAAAAATGGATAAGGGGGAAGGGCTAAATTTT
GTCTATGTCCAACGGATCACACCTATCAAGAACAAATCTTTTGTTTCAGTACGACCCGTAGTGAC
ATATGAAATAGCTGATGGGATCAATCTAGTAACGCTTTTCCCTGG
Found at i:144053 original size:48 final size:48
Alignment explanation
Indices: 143994--144095 Score: 204
Period size: 48 Copynumber: 2.1 Consensus size: 48
143984 AGCACTCGCA
143994 CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCT
1 CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCT
144042 CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCT
1 CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCT
144090 CGCAAG
1 CGCAAG
144096 AGTGCTCGCG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (48 bp):
CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCT
Left flanking sequence: Indices 143494 -- 143993
TTTTATCGAGAATAGTCCACCCAGCGGGAAAGCGAGAAGAGGCCTATATTTCGGAGTGCGTTAGT
GGCTCCTCTGTAGGTTTGAGCAAAGAAGTCGGAAGCTCGAAAGCAAGAAGTGTAGGTCGACCATC
ATCTGGAGAGGAAGCGGGAGCATGACTCGTATCAAGAGCAAAAGAGGGGCCTCACTCGTCTCGAG
AGAGGAGTTCATCTGCTGCGAAAAAACCACTCCGATAAAGCCCTCTACAGGATGACCTTGCTTTC
CTTAAACCCTCATTTGACTACCAGAAAGAGGAAAGAGCTTCAAGCGAGAGATCTTGACGTCAATT
GATGAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCACTCG
CAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAG
CACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCA
Right flanking sequence: Indices 144096 -- 144595
AGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCGTTGAGCTTTGCTCGCGACCCTTCTGTT
GAGCTTTGCTCCCGACCCTTCCGTTTGGGCTTTGGTCCGAATAGAAAAAAAGAAAAAAGAGATTG
AACTCTTTTGTTTCAGTTCAGTACGACCCGTAGTGACATATGAAATAGCTGATGGGATCAATCTG
GAGGTATCCATTTTCCTGGAGAAACAGATAAGATATCCCGACACATTGGCATCTTGATACCACCA
GGAGCAAGAGTAATGAAAAAAATGGATAAGGGGGAAGGGCTAAATTTTGTCTATGTCCAACGGAT
CACACCTATCAAGAACAAATCTTTTGTTTCAGTACGACCCGTAGTGACATATGAAATAGCTGATG
GGATCAATCTAGTAACGCTTTTCCCTGGGGATATGTTACAGGAAAAGGAGAATTTGCGACTCCAA
GTTGTCAATTATATCCTTTATGGGGATGGCAAACCAATTCGAGGA
Found at i:144200 original size:25 final size:25
Alignment explanation
Indices: 144114--144194 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
144104 CGACGTTTCA
144114 CTTTGCTCGCGACCCTTCCGTTGAG
1 CTTTGCTCGCGACCCTTCCGTTGAG
*
144139 CTTTGCTCGCGACCCTTCTGTTGAG
1 CTTTGCTCGCGACCCTTCCGTTGAG
* *
144164 CTTTGCTCCCGACCCTTCCGTTTGGG
1 CTTTGCTCGCGACCCTTCCG-TTGAG
144190 CTTTG
1 CTTTG
144195 GTCCGAATAG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 42 0.82
26 9 0.18
ACGTcount: A:0.06, C:0.35, G:0.23, T:0.36
Consensus pattern (25 bp):
CTTTGCTCGCGACCCTTCCGTTGAG
Left flanking sequence: Indices 143614 -- 144113
GTCGACCATCATCTGGAGAGGAAGCGGGAGCATGACTCGTATCAAGAGCAAAAGAGGGGCCTCAC
TCGTCTCGAGAGAGGAGTTCATCTGCTGCGAAAAAACCACTCCGATAAAGCCCTCTACAGGATGA
CCTTGCTTTCCTTAAACCCTCATTTGACTACCAGAAAGAGGAAAGAGCTTCAAGCGAGAGATCTT
GACGTCAATTGATGAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCAC
AAAGCACTCGCAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACG
CAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACGCAAGTCAA
AGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACG
CGATGCTTTGCACAAAGCGCTCGCAAGAGTGCTCGCGACGTTTCA
Right flanking sequence: Indices 144195 -- 144694
GTCCGAATAGAAAAAAAGAAAAAAGAGATTGAACTCTTTTGTTTCAGTTCAGTACGACCCGTAGT
GACATATGAAATAGCTGATGGGATCAATCTGGAGGTATCCATTTTCCTGGAGAAACAGATAAGAT
ATCCCGACACATTGGCATCTTGATACCACCAGGAGCAAGAGTAATGAAAAAAATGGATAAGGGGG
AAGGGCTAAATTTTGTCTATGTCCAACGGATCACACCTATCAAGAACAAATCTTTTGTTTCAGTA
CGACCCGTAGTGACATATGAAATAGCTGATGGGATCAATCTAGTAACGCTTTTCCCTGGGGATAT
GTTACAGGAAAAGGAGAATTTGCGACTCCAAGTTGTCAATTATATCCTTTATGGGGATGGCAAAC
CAATTCGAGGAATTTCCCATACAAGTATGAAATTGGTTCGTACTTGTTTAGTATTGAATTGGGAC
CAAGACCAAAAAGGTTCTATAGAAAAGGTTCAGGCTTCTTCTGCT
Found at i:146373 original size:13 final size:13
Alignment explanation
Indices: 146355--146381 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
146345 ATTAGCTAAG
146355 CTAAGATAATGGT
1 CTAAGATAATGGT
146368 CTAAGATAATGGT
1 CTAAGATAATGGT
146381 C
1 C
146382 ATTTGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (13 bp):
CTAAGATAATGGT
Left flanking sequence: Indices 145855 -- 146354
TTTTTCACCCGGGGAACTAATCGGATTGTTGCGAGCAGAACGAGCAGGTCGTGCTTTGGAAGAGG
TTGTTACCGAGCCGTCTTATTGGGTTGGGAATAACGAGAGCATCTCTTCATACTCTTTCATATCT
GAAGCTTCTCACTTAAGATCCATACAACTAAACTAAGAACTCCGAACCCAATTTGAGTGAAAAGG
AAACCGCTCGAGTTTGAGCAATCCGGGGTCGTATTGATTCAAGGTCTGAAAGAGAATGTTGTTCT
GGGGGGGATCCGTTGGTACCGGATTCAAACAAACGATTCGTTCACCGTTCAAGGGAATACAACAA
CATTCCTTTGGAAATACAAAAGCAGAATTGGAGTTCTGTTCTAGAGCGGGGGGGAAATCCACAGA
GAATTTCTTCTTGCATCCCAAAGCCAATTTCCATAATACATCAGAACAACCATTCTATGCTATGG
GATCTAATCCAATCGTTCATAAGAGCGGATTCATTATTAGCTAAG
Right flanking sequence: Indices 146382 -- 146881
ATTTGTTAATGTTAATTCATTTGTTAATAAAGAGAATATCTTGCATCCCAAAGCCAATTTCCATA
ATACGAAACCAAGGGTCAAGGAATTAATAATGAAGCTTGGACCGTGTATCAACGGTTAACCCCCG
GTAGAAGGTTCCATTGGAACAATTGGGTGACAAGAATTTGAGAGGAACATCAATTTTTCAGAGAT
GATGGATGAATTTTGGTCATAGCGGGGGGTACTAGGAAATGGAATCCGTCAATGGCACCTTACAT
CTCTGCAAAGCGTAAAGGTATTCATATTACAAATCTTACGAGAACTGCTCGTTTTTTATCAGAAG
CCTGTTCTTTCGTTTTTGACGCAACGCAGCAAGTAGAGGAAAACACTGATTAATAGTTGGTACGA
AAGATAAGGCAGCAGATTCGGTAGCATCAGCTGCAATAAGGGCTCGGTGTCATTATGTCAATCAA
AAATGGCTCGGTGGTATGTCAACGAATTGGTCCACTACGGAAACG
Found at i:151549 original size:49 final size:49
Alignment explanation
Indices: 151495--151752 Score: 410
Period size: 49 Copynumber: 5.3 Consensus size: 49
151485 CGCGAGCACT
151495 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
**
151544 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
** * ****
151593 CTTGCGAGCGCTTGAACTTAATGCATCGCGTATATTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
151642 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
*
151691 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGAT-AGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGA
151740 CTTGCGAGCGCTT
1 CTTGCGAGCGCTT
151753 TGTGCAAAGC
Statistics
Matches: 189, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 188 0.99
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (49 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
Left flanking sequence: Indices 150995 -- 151494
GGTTTCTGAACCAATTGAGATGACCCAAGAATTTCGCTATTTCGATTCTGCTAGTCCTTGGGAAC
AGCGTAGCGACGGATAATAGATAGAATAGAAGAAGGCATAGGTCCAATCCAAGCAGCGAGTGTCG
CCATTGTTGCAAGTGTAGCCTTCTTTCTACAGTGCGCGCTAGCTATCTCCGGCGCAGAGGAAGTG
CGCTAGCGCGCACTCCTGCTACGACGCCTACAACTGGAGCTACGCAAGCTGTAACTGCTGACGAA
GAGATTGGAGCGTCTTTTGTAGACTCTGAGCCTACAACTGCTACGACGCCTACACATGTATAGCC
TATCCTAGCCGGGACTGGGGACAAATCAATAGGAAATGCTATTTGCTTCCTAAGACAGGAAGAAC
TCCAATGAAATTCAAGAGTTTCACGGGCGTCGGATATCATGGAAGAAAAGAAGAAGAATCATTCA
ACTTGATGAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACT
Right flanking sequence: Indices 151753 -- 152252
TGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGC
GAGTGCTTTGAGTGAGAGAGTGCTTTTCACGTTTTGCGAGTGTTCGATTCGCCGCTTCTATTTGC
GAGTGCGTGCTTTGTTCTGCTGCTCTTAAAGCGGGCGGATCCGCAGCTCACACAATAGGAAGAGG
ATAGGGAAAAGTGGTCGACAGATCAGTCTCCAACAGTCTCATTTTGCGATCTATACAGTAATGTT
CTGACTTTGATTATGAGCCCTAGTCTATTCTGGTTTAGTACTTGGCATTTCTTTTCATCTCCTAT
GGCTCAAGATAAAATCCATGCTACTGGGCAGATCTTTCCACTTCCTATTCAAGAGGCTCGGGTGG
TGTACCGGAGGCCTCATGTTTGCTGTCATCTTTTCGCTCTTGGATCCCGAAGTGGGTAACATGAT
GGCTCCCTCGGGGGCTTCCGACCCATCAAGCTCGTCTTCTTGGAC
Found at i:151803 original size:17 final size:17
Alignment explanation
Indices: 151781--151843 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
151771 CTTATAGTGC
151781 GAGTGCTTTGAGTGATA
1 GAGTGCTTTGAGTGATA
* * *
151798 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGA-GTG-AT-A
*
151818 GAGTGCTTTGAGTGAGA
1 GAGTGCTTTGAGTGATA
151835 GAGTGCTTT
1 GAGTGCTTT
151844 TCACGTTTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
17 20 0.56
18 2 0.06
19 3 0.08
20 11 0.31
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.35
Consensus pattern (17 bp):
GAGTGCTTTGAGTGATA
Left flanking sequence: Indices 151281 -- 151780
TGAGCCTACAACTGCTACGACGCCTACACATGTATAGCCTATCCTAGCCGGGACTGGGGACAAAT
CAATAGGAAATGCTATTTGCTTCCTAAGACAGGAAGAACTCCAATGAAATTCAAGAGTTTCACGG
GCGTCGGATATCATGGAAGAAAAGAAGAAGAATCATTCAACTTGATGAGAAGGGTCGCGAGCAAA
GTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTT
TGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTT
GAACTTAATGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGC
ATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGAGCGCTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 151844 -- 152343
TCACGTTTTGCGAGTGTTCGATTCGCCGCTTCTATTTGCGAGTGCGTGCTTTGTTCTGCTGCTCT
TAAAGCGGGCGGATCCGCAGCTCACACAATAGGAAGAGGATAGGGAAAAGTGGTCGACAGATCAG
TCTCCAACAGTCTCATTTTGCGATCTATACAGTAATGTTCTGACTTTGATTATGAGCCCTAGTCT
ATTCTGGTTTAGTACTTGGCATTTCTTTTCATCTCCTATGGCTCAAGATAAAATCCATGCTACTG
GGCAGATCTTTCCACTTCCTATTCAAGAGGCTCGGGTGGTGTACCGGAGGCCTCATGTTTGCTGT
CATCTTTTCGCTCTTGGATCCCGAAGTGGGTAACATGATGGCTCCCTCGGGGGCTTCCGACCCAT
CAAGCTCGTCTTCTTGGACTGCGTATGAGATAAATTCTGATCAAAGGAAGATTGCAAAAGAAAGA
AAGACTCTTTTCAATTTTCATTCAAGAGTGATTATGTGTTTCCAC
Found at i:155521 original size:41 final size:41
Alignment explanation
Indices: 155476--155555 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
155466 TCTCACTAAA
155476 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTC
1 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTC
155517 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
1 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
155556 AGTGCTCGCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (41 bp):
AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTC
Left flanking sequence: Indices 154976 -- 155475
CTAGGTTCCCACCCAGCTTGCTTGGTAGGCTCTTCCCTGATTCTGATCCCCAAGCCCCCTGGCTA
ACCCACGCAACTAGGCGAGCCGTCCTGGGATGGGTGGGAAAATGACCAGCCTACCCCTCATATTG
GTTGTGTTCTACCTCTCGATACCTTACCCATTTCCTTCCGTTTTTTCCGAAGACACGATTGGCAT
GCAACTACCGAACGAGCGAGCCGTCACTCCTTCTTGCTCGTTGGCTGCTGACCAACAGGATCGGA
AAGAAAGAGGAAAAAGCAGGTGGCGGGACGTCCCACTCATTTCATGCTGGCATTTCTCATACGCG
GGAAGAACAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGG
CAAGAGAGCTTTGCACAAAGCGCTCGCAAGCTTTGCTCCGGCTTTGCTAATTTCTCATTTGGGCT
TTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAAA
Right flanking sequence: Indices 155556 -- 156055
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGAATAATTGGGCAAAGCACAAAAT
AGAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCATGACACGCAATTCTTGTCCCTGACGCAATT
CTTGTCCCTAACGCAATGAAATGCGAGTGCTTTTCTCTTTCTCGCGTAAAAGGCGCGTATATCGC
GCTTGTCTTGAGCCCTTTTGAGCGGAAGCCTACCCTTACCCCCTTGCTTTCTATCGATATGGGCC
AGCAGATTCCTGGTGTAAATCAAAGTCAGAAAGCGCCCGTCTGACCCTTGACTAGCTAGCAGCGC
TTTTGGGGCCATAACTACAGGGCAAACCGTAGAGAGGCAAACCTTAACTTACCGCAGCTCAATGA
GGTACCAATCCAGTAAGACTACCACCCAAAAACTTAGGGGAGGACTTCTCTGCACTCGCCTTAAA
GCGCCTAAGGAGAAGGTAAGGAAGCATTAGGGAAGGCCTATAAAG
Found at i:155683 original size:18 final size:18
Alignment explanation
Indices: 155660--155702 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
155650 TGCTCATGAC
*
155660 ACGCAATTCTTGTCCCTG
1 ACGCAATTCTTGTCCCTA
155678 ACGCAATTCTTGTCCCTA
1 ACGCAATTCTTGTCCCTA
155696 ACGCAAT
1 ACGCAAT
155703 GAAATGCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (18 bp):
ACGCAATTCTTGTCCCTA
Left flanking sequence: Indices 155160 -- 155659
ACGATTGGCATGCAACTACCGAACGAGCGAGCCGTCACTCCTTCTTGCTCGTTGGCTGCTGACCA
ACAGGATCGGAAAGAAAGAGGAAAAAGCAGGTGGCGGGACGTCCCACTCATTTCATGCTGGCATT
TCTCATACGCGGGAAGAACAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTC
GCACTATAAGGCAAGAGAGCTTTGCACAAAGCGCTCGCAAGCTTTGCTCCGGCTTTGCTAATTTC
TCATTTGGGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAAAAGCACGCGA
TGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCT
CGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGAATAATTGGGCAAAGCA
CAAAATAGAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCATGAC
Right flanking sequence: Indices 155703 -- 156202
GAAATGCGAGTGCTTTTCTCTTTCTCGCGTAAAAGGCGCGTATATCGCGCTTGTCTTGAGCCCTT
TTGAGCGGAAGCCTACCCTTACCCCCTTGCTTTCTATCGATATGGGCCAGCAGATTCCTGGTGTA
AATCAAAGTCAGAAAGCGCCCGTCTGACCCTTGACTAGCTAGCAGCGCTTTTGGGGCCATAACTA
CAGGGCAAACCGTAGAGAGGCAAACCTTAACTTACCGCAGCTCAATGAGGTACCAATCCAGTAAG
ACTACCACCCAAAAACTTAGGGGAGGACTTCTCTGCACTCGCCTTAAAGCGCCTAAGGAGAAGGT
AAGGAAGCATTAGGGAAGGCCTATAAAGAAGGGAAGGATTAGTAAGAAAAGCAAAGTTGTAAAGC
CAAGGTCTTCTCCTGACGTCCTCCTTACTAGTCATTGACTCCGCTAGTGGGCCAAGCAACAGTTA
TTAGGACACTAAACCTGCCTTAACTGACTTACAGAGGAACTTACA
Found at i:161172 original size:21 final size:21
Alignment explanation
Indices: 161146--161187 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
161136 AGTGACGACT
161146 CTTCTCCACTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
**
161167 CTTCTCTTCTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
161188 AAGTGCGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (21 bp):
CTTCTCCACTTCGGAGCGAGC
Left flanking sequence: Indices 160646 -- 161145
TGCTTTTCCATCGCCTTCAACGGCGGACCTACCAGACGAGCCTGATATTGAACCTTTCATTAGTC
TTTTTGGAAAGGGCTTTTTCTTCTTTGATCGGCTAGCTTACTTCTTAAACGAAGACGGCGAGGTC
CTATCTATACACCGACCCTCATTTAATTCATCCTGTCGTTACTCTCAAATCAGTTTCCACCCTTC
CATATTGCATCACCTTTCTTCAAAATATGCCGTCGACCGTCAAATTTCTCAATGACGTTCAGGCT
TGGAAGGCTAGTCCGACTACAGCTGCTAACGGAAACGTTAGCCGTTCCACTCGTGCTTCTCTTGG
GATCCTTCCACTCGCCTGACAGATCATTCGAAGGATGACTCCGTACTAATCGTTGCAGTACTATC
GGACTAAGAAAAGCTATCAAAGTCGCTACTCACAACACGGACTTCCTTCTTCGTTCTTTGACTGC
CTTACCGGAGACTCAAGCCAGGCCTACGAGCGTAGAGTGACGACT
Right flanking sequence: Indices 161188 -- 161687
AAGTGCGGAGCAAGCCTACGTTCATTAGAGCCAACAAGCAAGTAGGCACTACTCAAAACTCAAGA
GGTGGGCTACTTAGCCCATTATCTACCGAAGAAAAAAGAAGTGGATGGCCAGGCCCCCGGTTCCC
AGGGTGAGGGTATTCCCTATGTTGAGCCTACTAAGATCAGAACTGAACGTTTTTCTTCTCCTTCG
CCTATCGGCCGGCCGGCTTTAAGCAAGCTACCTTCGCATTTCCTGCTTAGATCCCAAGTCTCCAA
GTGGGCCCTCTTGGCCATCCAACCCACGGCCTTGGCTTGATAGAGAATCCCGCTCCTGTGTCGTA
GGACGCTCGGCAGTCCACCGGGTGGGTTATCCTTCCAGTTTCGAGTGTCTTCTTGGATAATTATA
GCGGCCCATAGGCGCAAGATGTACCTTGTGTGGGGGGGGCGGCGGTCCCCTGGACATAGTCCTTG
AATTTCAGGCAGTGGCCGTTTAGTCCATGGTCCATTGGATGGTCG
Found at i:169048 original size:17 final size:17
Alignment explanation
Indices: 169026--169126 Score: 91
Period size: 17 Copynumber: 5.8 Consensus size: 17
169016 CTATCGCAAG
169026 TCAAAGCACTCGCACAC
1 TCAAAGCACTCGCACAC
*
169043 TCAAAGCACTCTATCGCA-AG
1 TCAAAGCA--C--TCGCACAC
*
169063 TCAAAGCACTCGCACGC
1 TCAAAGCACTCGCACAC
*
169080 TCAAAGCACTCGCA-AG
1 TCAAAGCACTCGCACAC
* *
169096 TCAAAGCACTC-TATCGC
1 TCAAAGCACTCGCA-CAC
169113 TCAAAGCACTCGCA
1 TCAAAGCACTCGCA
169127 AGAGGACTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
15 1 0.01
16 16 0.24
17 33 0.49
18 2 0.03
19 1 0.01
20 9 0.13
21 5 0.07
ACGTcount: A:0.34, C:0.36, G:0.15, T:0.16
Consensus pattern (17 bp):
TCAAAGCACTCGCACAC
Left flanking sequence: Indices 168526 -- 169025
GAAGCCGGGTGGTCGCCCGGTCTTTAGAATAGCCAGTAGCTAACACGTTTTTGTTTTCTAGAATT
GGAAATCTCACTCTGTAGCTCTAGCTGTATGTAGGGTAGGGCTTCGGCCATAACAGAAAAAGGGG
TCGGGTCCAAGCATGGATTGCGAACTCCCCCCTTTCCGGATCAGGAGAAAAGGGATTCGAACCCT
TAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAACTATTCTCCCAACAAAGAAGAAATTT
GAACTATTGGCGAGCCGCTGAGCGTAGCGAAGTCAAGAGGGTGAAATGCTCGGCGAAAAGAGCTC
CGAGGTTCGATCATCCTATAAAGAAAGCCTCGCAAAGCGGAAGGCAAAGCTCGTCCACGAGCAAA
GCAAACTAAACAACTGAAAGACTAGTGGTCAAAGCACTCGCAAAGCGAAGCAACGAGATTAGCAA
AGCCCACAAAGCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAG
Right flanking sequence: Indices 169127 -- 169626
AGAGGACTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTC
TCACTAAAAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCG
ATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGC
GCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGAGTGCTCGCGACG
TTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACGTTGAGCTT
TGCTCCCGACCCTTCCATCAAGTTGGGGACAGCCCCAAGATGACTCAGCTGAGGGCTGCAATCTT
CAGACGAGAATCAAGCAGTCTTTCTGTCTGACGCAGCCCAAAGGCCTTTCCTCTTCAAGGCTTGC
AACCATCCGCATTCAGTCTTATCAGTTATGCACATGACATCGCGG
Found at i:169057 original size:37 final size:37
Alignment explanation
Indices: 169008--169123 Score: 170
Period size: 37 Copynumber: 3.2 Consensus size: 37
168998 CAAAGCGTGA
*
169008 AAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTC
1 AAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCTC
169045 AAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCTC
1 AAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCTC
*
169082 AAAGCA--C--TCGCAAGTCAAAGCACTC-TATCGCTC
1 AAAGCACTCTATCGCAAGTCAAAGCACTCGCA-CGCTC
169115 AAAGCACTC
1 AAAGCACTC
169124 GCAAGAGGAC
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
32 1 0.01
33 29 0.39
35 2 0.03
37 42 0.57
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.16
Consensus pattern (37 bp):
AAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCTC
Left flanking sequence: Indices 168508 -- 169007
TGTTTTTTGAGATCCTCAGAAGCCGGGTGGTCGCCCGGTCTTTAGAATAGCCAGTAGCTAACACG
TTTTTGTTTTCTAGAATTGGAAATCTCACTCTGTAGCTCTAGCTGTATGTAGGGTAGGGCTTCGG
CCATAACAGAAAAAGGGGTCGGGTCCAAGCATGGATTGCGAACTCCCCCCTTTCCGGATCAGGAG
AAAAGGGATTCGAACCCTTAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAACTATTCTC
CCAACAAAGAAGAAATTTGAACTATTGGCGAGCCGCTGAGCGTAGCGAAGTCAAGAGGGTGAAAT
GCTCGGCGAAAAGAGCTCCGAGGTTCGATCATCCTATAAAGAAAGCCTCGCAAAGCGGAAGGCAA
AGCTCGTCCACGAGCAAAGCAAACTAAACAACTGAAAGACTAGTGGTCAAAGCACTCGCAAAGCG
AAGCAACGAGATTAGCAAAGCCCACAAAGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 169124 -- 169623
GCAAGAGGACTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACT
CTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATC
GCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAA
AGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGAGTGCTCGCG
ACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACGTTGAG
CTTTGCTCCCGACCCTTCCATCAAGTTGGGGACAGCCCCAAGATGACTCAGCTGAGGGCTGCAAT
CTTCAGACGAGAATCAAGCAGTCTTTCTGTCTGACGCAGCCCAAAGGCCTTTCCTCTTCAAGGCT
TGCAACCATCCGCATTCAGTCTTATCAGTTATGCACATGACATCG
Found at i:169098 original size:33 final size:33
Alignment explanation
Indices: 169019--169128 Score: 150
Period size: 33 Copynumber: 3.2 Consensus size: 33
169009 AAGCACTCTA
*
169019 TCGCAAGTCAAAGCACTCGCACACTCAAAGCACTC
1 TCGCAAGTCAAAGCACTCGCACGCTCAAAGCA--C
169054 TATCGCAAGTCAAAGCACTCGCACGCTCAAAGCAC
1 --TCGCAAGTCAAAGCACTCGCACGCTCAAAGCAC
*
169089 TCGCAAGTCAAAGCACTC-TATCGCTCAAAGCAC
1 TCGCAAGTCAAAGCACTCGCA-CGCTCAAAGCAC
169122 TCGCAAG
1 TCGCAAG
169129 AGGACTTTCT
Statistics
Matches: 70, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
32 1 0.01
33 37 0.53
35 1 0.01
37 31 0.44
ACGTcount: A:0.34, C:0.35, G:0.16, T:0.15
Consensus pattern (33 bp):
TCGCAAGTCAAAGCACTCGCACGCTCAAAGCAC
Left flanking sequence: Indices 168519 -- 169018
ATCCTCAGAAGCCGGGTGGTCGCCCGGTCTTTAGAATAGCCAGTAGCTAACACGTTTTTGTTTTC
TAGAATTGGAAATCTCACTCTGTAGCTCTAGCTGTATGTAGGGTAGGGCTTCGGCCATAACAGAA
AAAGGGGTCGGGTCCAAGCATGGATTGCGAACTCCCCCCTTTCCGGATCAGGAGAAAAGGGATTC
GAACCCTTAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAACTATTCTCCCAACAAAGAA
GAAATTTGAACTATTGGCGAGCCGCTGAGCGTAGCGAAGTCAAGAGGGTGAAATGCTCGGCGAAA
AGAGCTCCGAGGTTCGATCATCCTATAAAGAAAGCCTCGCAAAGCGGAAGGCAAAGCTCGTCCAC
GAGCAAAGCAAACTAAACAACTGAAAGACTAGTGGTCAAAGCACTCGCAAAGCGAAGCAACGAGA
TTAGCAAAGCCCACAAAGCACTCGCAAAGCGTGAAAAGCACTCTA
Right flanking sequence: Indices 169129 -- 169628
AGGACTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTCTC
ACTAAAAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGC
TCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGAGTGCTCGCGACGTT
GAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTG
CTCCCGACCCTTCCATCAAGTTGGGGACAGCCCCAAGATGACTCAGCTGAGGGCTGCAATCTTCA
GACGAGAATCAAGCAGTCTTTCTGTCTGACGCAGCCCAAAGGCCTTTCCTCTTCAAGGCTTGCAA
CCATCCGCATTCAGTCTTATCAGTTATGCACATGACATCGCGGCT
Found at i:169276 original size:49 final size:49
Alignment explanation
Indices: 169204--169358 Score: 259
Period size: 49 Copynumber: 3.3 Consensus size: 49
169194 ACTAAAAGCA
169204 CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
1 CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
169253 CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
1 CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
*
169302 CGCGATGCTTTGCA--CA----AAGCGCTCGCAAGTCAAAGCACTCTAT
1 CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
169345 CGCGATGCTTTGCA
1 CGCGATGCTTTGCA
169359 CAAAGCGCTC
Statistics
Matches: 105, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
43 41 0.39
47 1 0.01
49 63 0.60
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (49 bp):
CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
Left flanking sequence: Indices 168704 -- 169203
AAAGGGATTCGAACCCTTAACCTGTGGTTTTGGAGACCATTGTTCTACCATTGGAACTATTCTCC
CAACAAAGAAGAAATTTGAACTATTGGCGAGCCGCTGAGCGTAGCGAAGTCAAGAGGGTGAAATG
CTCGGCGAAAAGAGCTCCGAGGTTCGATCATCCTATAAAGAAAGCCTCGCAAAGCGGAAGGCAAA
GCTCGTCCACGAGCAAAGCAAACTAAACAACTGAAAGACTAGTGGTCAAAGCACTCGCAAAGCGA
AGCAACGAGATTAGCAAAGCCCACAAAGCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAGTCA
AAGCACTCGCACACTCAAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCTCAAAGCACTCGCA
AGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGAGGACTTTCTATTATAGTTGGGCTTTGCAT
TAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTCTCACTAAAAGCA
Right flanking sequence: Indices 169359 -- 169858
CAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGAC
GTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTTGGGGACAGCCCCA
AGATGACTCAGCTGAGGGCTGCAATCTTCAGACGAGAATCAAGCAGTCTTTCTGTCTGACGCAGC
CCAAAGGCCTTTCCTCTTCAAGGCTTGCAACCATCCGCATTCAGTCTTATCAGTTATGCACATGA
CATCGCGGCTGAGCTTAATAGAAAGATATAAAGCAGCTCTCATATTGCTTCGCAGCGGAATTGTT
CGTCATCTTTTTCTGGCCTTCTACGAGAATGGAGGGGTTCTTATACTAATTATATATATACTCCG
GATACAACTTCCACATGTTTGAACTTGTCTGCCCTCATTTGAAGAGGCGGGAATTGCATCTATTG
GCTTATCATCTTGGCTGGGGGCAAAATGCCCATTCGTCCACAAGT
Found at i:169336 original size:43 final size:43
Alignment explanation
Indices: 169226--169373 Score: 233
Period size: 43 Copynumber: 3.3 Consensus size: 43
169216 CATTAAGTTC
*
169226 AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAA
1 AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCA--CA
169271 GTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
1 ----AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
169318 AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
1 AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
169361 AAGCGCTCGCAAG
1 AAGCGCTCGCAAG
169374 AGTGCTCGCG
Statistics
Matches: 98, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
43 56 0.57
47 1 0.01
49 41 0.42
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (43 bp):
AAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACA
Left flanking sequence: Indices 168726 -- 169225
TGTGGTTTTGGAGACCATTGTTCTACCATTGGAACTATTCTCCCAACAAAGAAGAAATTTGAACT
ATTGGCGAGCCGCTGAGCGTAGCGAAGTCAAGAGGGTGAAATGCTCGGCGAAAAGAGCTCCGAGG
TTCGATCATCCTATAAAGAAAGCCTCGCAAAGCGGAAGGCAAAGCTCGTCCACGAGCAAAGCAAA
CTAAACAACTGAAAGACTAGTGGTCAAAGCACTCGCAAAGCGAAGCAACGAGATTAGCAAAGCCC
ACAAAGCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCA
CTCTATCGCAAGTCAAAGCACTCGCACGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCA
AAGCACTCGCAAGAGGACTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTC
AAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTTC
Right flanking sequence: Indices 169374 -- 169873
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCC
CGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTTGGGGACAGCCCCAAGATGACTCAGCTGA
GGGCTGCAATCTTCAGACGAGAATCAAGCAGTCTTTCTGTCTGACGCAGCCCAAAGGCCTTTCCT
CTTCAAGGCTTGCAACCATCCGCATTCAGTCTTATCAGTTATGCACATGACATCGCGGCTGAGCT
TAATAGAAAGATATAAAGCAGCTCTCATATTGCTTCGCAGCGGAATTGTTCGTCATCTTTTTCTG
GCCTTCTACGAGAATGGAGGGGTTCTTATACTAATTATATATATACTCCGGATACAACTTCCACA
TGTTTGAACTTGTCTGCCCTCATTTGAAGAGGCGGGAATTGCATCTATTGGCTTATCATCTTGGC
TGGGGGCAAAATGCCCATTCGTCCACAAGTCCTTCAGCAATTTGA
Found at i:169400 original size:19 final size:19
Alignment explanation
Indices: 169376--169461 Score: 154
Period size: 19 Copynumber: 4.5 Consensus size: 19
169366 CTCGCAAGAG
*
169376 TGCTCGCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
*
169395 TGCTCGCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
169414 TGCTCCCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
169433 TGCTCCCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
169452 TGCTCCCGAC
1 TGCTCCCGAC
169462 CCTTCCATCA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
19 66 1.00
ACGTcount: A:0.10, C:0.31, G:0.28, T:0.30
Consensus pattern (19 bp):
TGCTCCCGACGTTGAGCTT
Left flanking sequence: Indices 168876 -- 169375
AGCCTCGCAAAGCGGAAGGCAAAGCTCGTCCACGAGCAAAGCAAACTAAACAACTGAAAGACTAG
TGGTCAAAGCACTCGCAAAGCGAAGCAACGAGATTAGCAAAGCCCACAAAGCACTCGCAAAGCGT
GAAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTCTATCGCAAGTCAAAGCA
CTCGCACGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGAGGACTT
TCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTCTCACTAAAA
GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGC
ATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAG
TCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 169462 -- 169961
CCTTCCATCAAGTTGGGGACAGCCCCAAGATGACTCAGCTGAGGGCTGCAATCTTCAGACGAGAA
TCAAGCAGTCTTTCTGTCTGACGCAGCCCAAAGGCCTTTCCTCTTCAAGGCTTGCAACCATCCGC
ATTCAGTCTTATCAGTTATGCACATGACATCGCGGCTGAGCTTAATAGAAAGATATAAAGCAGCT
CTCATATTGCTTCGCAGCGGAATTGTTCGTCATCTTTTTCTGGCCTTCTACGAGAATGGAGGGGT
TCTTATACTAATTATATATATACTCCGGATACAACTTCCACATGTTTGAACTTGTCTGCCCTCAT
TTGAAGAGGCGGGAATTGCATCTATTGGCTTATCATCTTGGCTGGGGGCAAAATGCCCATTCGTC
CACAAGTCCTTCAGCAATTTGACCATACAAAGAAGGAATGAAAGAAGGAATGTAATACAGGCTTA
TCCTTGATTTATAAGCGTTCTTCTCTTAAGAGAACAGTCAGGTCT
Found at i:174306 original size:20 final size:20
Alignment explanation
Indices: 174283--174355 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
174273 CAAAGCGTGA
174283 AAAGCACTCTATCGCAAGTC
1 AAAGCACTCTATCGCAAGTC
*
174303 AAAGCACTCGCA-CGCAAGTC
1 AAAGCACTC-TATCGCAAGTC
* *
174323 AAAGCACTC--GCGC-ACTC
1 AAAGCACTCTATCGCAAGTC
174340 AAAGCACTCTATCGCA
1 AAAGCACTCTATCGCA
174356 GGGCTTTCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 12 0.27
18 3 0.07
19 3 0.07
20 26 0.58
21 1 0.02
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.15
Consensus pattern (20 bp):
AAAGCACTCTATCGCAAGTC
Left flanking sequence: Indices 173783 -- 174282
TGGAGAGGTTGTCACCGAGCATTCCTAGTCACACGAGAAGAGAGGTCCAATGGCAAGGCAAGGCC
ATACGCCCGTGTGGCTCCTCGCGGAGTATAGCTCACATCCAAACATCTGATTGGGGAACGGGGCA
ACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTC
TTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGGGAAGCTCGAAGCT
TGGAAAGCCGATTACCGCTAGGCTTATGTAGTGGTCGGCCTTATAAAGCTCGCTAAGCTTCGCTC
CCCCCCCTGACAGTGGTAGTCGGCATTCAACTTCTATAAGCGACTTGTCGAGCTTTCTAATGCTT
TGCTTCTTGGTTTCGTAGTCTTTTTTGACCCTGCATTCCGTCTGCCTAGCCGCCCTACACCAAAG
TCGATCTTTTAGGCAAAGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 174356 -- 174855
GGGCTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACG
CGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAA
GCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
TGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTT
CACTTTGCTCGCGACCCTCCCTTCTGTTGAGCTTTGCTCGCGACCCTTCTGTTTAGCTTTGCTCC
CTTCCATCAAGTTGGGGGCAAAGCGAATCGTCAAAGCACTCGCAAAGCCCTTAAGCCATTCAAAG
TAGCGAGTGCTTTGATCAACCTGAGAAAGTACGAAAGAAAGTACGTTAAGGTTACGAAGTCACTT
AGCCGAACTATGAAAAAAAAGAAGAAGAATGGTTATGAACGGGAG
Found at i:174433 original size:49 final size:49
Alignment explanation
Indices: 174376--174580 Score: 236
Period size: 49 Copynumber: 4.6 Consensus size: 49
174366 TTATAGTTGG
174376 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
1 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
*
174425 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTC-TATCGCGAT
1 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGAT
*
174474 GCTTTGCA--CA----AAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
1 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
174517 GCTTTGC----A-TT-AAGCGCTCGCAAGT-----CA---GCACGCGAT
1 GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
174552 GCTTTGCATTAAGTTCAAGCGCTCGCAAG
1 GCTTTGCATTAAGTTCAAGCGCTCGCAAG
174581 AGTGCTCGCG
Statistics
Matches: 143, Mismatches: 3, Indels: 28
0.82 0.02 0.16
Matches are distributed among these distances:
35 16 0.11
38 2 0.01
39 1 0.01
40 2 0.01
41 14 0.10
43 51 0.36
44 1 0.01
47 1 0.01
48 1 0.01
49 54 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (49 bp):
GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
Left flanking sequence: Indices 173876 -- 174375
TAGCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGA
AGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGA
CCTGGGACCTTGGCTTAGCAACGGGAAGCTCGAAGCTTGGAAAGCCGATTACCGCTAGGCTTATG
TAGTGGTCGGCCTTATAAAGCTCGCTAAGCTTCGCTCCCCCCCCTGACAGTGGTAGTCGGCATTC
AACTTCTATAAGCGACTTGTCGAGCTTTCTAATGCTTTGCTTCTTGGTTTCGTAGTCTTTTTTGA
CCCTGCATTCCGTCTGCCTAGCCGCCCTACACCAAAGTCGATCTTTTAGGCAAAGCACAAAGCAC
GCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACT
CGCGCACTCAAAGCACTCTATCGCAGGGCTTTCTATTATAGTTGG
Right flanking sequence: Indices 174581 -- 175080
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGCGACCCTCCCTTCTGTTGA
GCTTTGCTCGCGACCCTTCTGTTTAGCTTTGCTCCCTTCCATCAAGTTGGGGGCAAAGCGAATCG
TCAAAGCACTCGCAAAGCCCTTAAGCCATTCAAAGTAGCGAGTGCTTTGATCAACCTGAGAAAGT
ACGAAAGAAAGTACGTTAAGGTTACGAAGTCACTTAGCCGAACTATGAAAAAAAAGAAGAAGAAT
GGTTATGAACGGGAGCTGTGGAGACTACACTAAGGTACGGAGTTGCGTCAGCTTAATAGAAAGAT
ATAGAAAAGGCTAAGGAACGGAGTCTTCCACTATGGACCGAGACTACACTAAGGAACAAGGAAGC
TTGACTGCAAAAATCAGTCAAGGACCTCTAATAGCCGCCCAGGAGGGCGAAGGGATTTTCCAAAG
TCTTTTTGTGCTCGGAGCTACCTTTTCTTCTTGTGTTATTATATA
Found at i:174502 original size:43 final size:43
Alignment explanation
Indices: 174392--174542 Score: 196
Period size: 43 Copynumber: 3.4 Consensus size: 43
174382 CATTAAGTTC
174392 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAA
1 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCA--AA
* *
174437 GTTCAAGCGCTCGCAAGTCAAAGCACTC-TATCGCGATGCTTTGCACA
1 ----AAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCAAA
**
174484 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATT
1 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCAAA
174527 AAGCGCTCGCAAGTCA
1 AAGCGCTCGCAAGTCA
174543 GCACGCGATG
Statistics
Matches: 95, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
43 54 0.57
44 1 0.01
47 1 0.01
48 1 0.01
49 38 0.40
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (43 bp):
AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCAAA
Left flanking sequence: Indices 173892 -- 174391
ATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGT
ATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTT
AGCAACGGGAAGCTCGAAGCTTGGAAAGCCGATTACCGCTAGGCTTATGTAGTGGTCGGCCTTAT
AAAGCTCGCTAAGCTTCGCTCCCCCCCCTGACAGTGGTAGTCGGCATTCAACTTCTATAAGCGAC
TTGTCGAGCTTTCTAATGCTTTGCTTCTTGGTTTCGTAGTCTTTTTTGACCCTGCATTCCGTCTG
CCTAGCCGCCCTACACCAAAGTCGATCTTTTAGGCAAAGCACAAAGCACGCACTCGCAAAGCGTG
AAAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCGCACTCAAAGCAC
TCTATCGCAGGGCTTTCTATTATAGTTGGGCTTTGCATTAAGTTC
Right flanking sequence: Indices 174543 -- 175042
GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCG
CGACGTTTCACTTTGCTCGCGACCCTCCCTTCTGTTGAGCTTTGCTCGCGACCCTTCTGTTTAGC
TTTGCTCCCTTCCATCAAGTTGGGGGCAAAGCGAATCGTCAAAGCACTCGCAAAGCCCTTAAGCC
ATTCAAAGTAGCGAGTGCTTTGATCAACCTGAGAAAGTACGAAAGAAAGTACGTTAAGGTTACGA
AGTCACTTAGCCGAACTATGAAAAAAAAGAAGAAGAATGGTTATGAACGGGAGCTGTGGAGACTA
CACTAAGGTACGGAGTTGCGTCAGCTTAATAGAAAGATATAGAAAAGGCTAAGGAACGGAGTCTT
CCACTATGGACCGAGACTACACTAAGGAACAAGGAAGCTTGACTGCAAAAATCAGTCAAGGACCT
CTAATAGCCGCCCAGGAGGGCGAAGGGATTTTCCAAAGTCTTTTT
Found at i:174607 original size:19 final size:19
Alignment explanation
Indices: 174583--174630 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
174573 CTCGCAAGAG
*
174583 TGCTCGCGACG-TTGAGCTT
1 TGCTCGCGACGTTTCA-CTT
174602 TGCTCGCGACGTTTCACTT
1 TGCTCGCGACGTTTCACTT
174621 TGCTCGCGAC
1 TGCTCGCGAC
174631 CCTCCCTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 24 0.89
20 3 0.11
ACGTcount: A:0.10, C:0.31, G:0.27, T:0.31
Consensus pattern (19 bp):
TGCTCGCGACGTTTCACTT
Left flanking sequence: Indices 174083 -- 174582
TTATAAAGCTCGCTAAGCTTCGCTCCCCCCCCTGACAGTGGTAGTCGGCATTCAACTTCTATAAG
CGACTTGTCGAGCTTTCTAATGCTTTGCTTCTTGGTTTCGTAGTCTTTTTTGACCCTGCATTCCG
TCTGCCTAGCCGCCCTACACCAAAGTCGATCTTTTAGGCAAAGCACAAAGCACGCACTCGCAAAG
CGTGAAAAGCACTCTATCGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCGCACTCAAA
GCACTCTATCGCAGGGCTTTCTATTATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
AAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGA
TGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAG
Right flanking sequence: Indices 174631 -- 175130
CCTCCCTTCTGTTGAGCTTTGCTCGCGACCCTTCTGTTTAGCTTTGCTCCCTTCCATCAAGTTGG
GGGCAAAGCGAATCGTCAAAGCACTCGCAAAGCCCTTAAGCCATTCAAAGTAGCGAGTGCTTTGA
TCAACCTGAGAAAGTACGAAAGAAAGTACGTTAAGGTTACGAAGTCACTTAGCCGAACTATGAAA
AAAAAGAAGAAGAATGGTTATGAACGGGAGCTGTGGAGACTACACTAAGGTACGGAGTTGCGTCA
GCTTAATAGAAAGATATAGAAAAGGCTAAGGAACGGAGTCTTCCACTATGGACCGAGACTACACT
AAGGAACAAGGAAGCTTGACTGCAAAAATCAGTCAAGGACCTCTAATAGCCGCCCAGGAGGGCGA
AGGGATTTTCCAAAGTCTTTTTGTGCTCGGAGCTACCTTTTCTTCTTGTGTTATTATATAACAGA
AAGAGGGGGGGCGTTCTTAGGAAGAGCCGTACGAGGCAGCTCACG
Found at i:177088 original size:19 final size:19
Alignment explanation
Indices: 177064--177130 Score: 125
Period size: 19 Copynumber: 3.5 Consensus size: 19
177054 TGATGGAAGG
177064 GTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
177083 GTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
177102 GTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
*
177121 GTCGCGAGCA
1 GTCGGGAGCA
177131 CTCTTGCGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 47 1.00
ACGTcount: A:0.30, C:0.27, G:0.33, T:0.10
Consensus pattern (19 bp):
GTCGGGAGCAAAGCTCAAC
Left flanking sequence: Indices 176564 -- 177063
CCAGGGGCCCGGCGCCCAGCTCCGCTGGAGAGGCCTAGCCTGATCTGAGAAGTGCGTCTTCGGTT
CGGAGAGACGGAATTCAAAAACGCCGCCGCCCCTAGCACTAACGCTTAGAGAGTGTTGCCTACGA
GCGAAGTTGTAGGAGCGAGTTTTTTGACGAGCAAACTGAGCAACCTTGAGGCCTACGAGCGTAGA
GTGACGACTCTTCTTCGAGCCTACAAGTCAGTGCTATGCAAGCTGTAACTGCGAGAAATGTCTGC
CCTACTGCTACGCAAGCCTACATACGTTCACTATTGAAACTCGCTCGCTTCGCTTTCTCTTGTAG
GCTCGTTCCGACTCTTCGTCTACACTCGTAGCTCGCTGTCTACGGAGCTCGCCTTCACTGGAATC
AAGAATCTTTCTAAGTGAAAGAAGATCTGTGAATCAACCAACGTATAAAAACATTGAAAAGCGAG
TGCTTTGTACCAGCGTCACGTCACGTCACGTCAATTGATGGAAGG
Right flanking sequence: Indices 177131 -- 177630
CTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTG
AACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGC
TTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGT
GCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGC
GTGCTTTGTGCAAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCTAACGCAAAGCTT
TGCGAGTGCTTTGACTAATAGCAGTTTCTCGCTCGGCGCCTAAAGCGCACTATGCTCCGCTGCCA
CAAATGAGAGTTTTCGGTGGAACCGGTGAACCACGCGAGAGCTGGTTAGATGCGTGGGGCAGAGG
GCTCGTAGTACCTGCTAGCGCAGCTATGCTGTGGAAGGGAAGGAG
Found at i:177258 original size:41 final size:41
Alignment explanation
Indices: 177133--177261 Score: 168
Period size: 41 Copynumber: 3.0 Consensus size: 41
177123 CGCGAGCACT
177133 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGC------GTGC--TGA
**
177182 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGA
177223 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCT
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCT
177262 TTTAGTGAGA
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
41 40 0.53
43 4 0.05
49 32 0.42
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (41 bp):
CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 176633 -- 177132
GAGACGGAATTCAAAAACGCCGCCGCCCCTAGCACTAACGCTTAGAGAGTGTTGCCTACGAGCGA
AGTTGTAGGAGCGAGTTTTTTGACGAGCAAACTGAGCAACCTTGAGGCCTACGAGCGTAGAGTGA
CGACTCTTCTTCGAGCCTACAAGTCAGTGCTATGCAAGCTGTAACTGCGAGAAATGTCTGCCCTA
CTGCTACGCAAGCCTACATACGTTCACTATTGAAACTCGCTCGCTTCGCTTTCTCTTGTAGGCTC
GTTCCGACTCTTCGTCTACACTCGTAGCTCGCTGTCTACGGAGCTCGCCTTCACTGGAATCAAGA
ATCTTTCTAAGTGAAAGAAGATCTGTGAATCAACCAACGTATAAAAACATTGAAAAGCGAGTGCT
TTGTACCAGCGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGTCGG
GAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGCGAGCACT
Right flanking sequence: Indices 177262 -- 177761
TTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTG
CGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCG
TGCTTTGTGCAAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCTAACGCAAAGCTTT
GCGAGTGCTTTGACTAATAGCAGTTTCTCGCTCGGCGCCTAAAGCGCACTATGCTCCGCTGCCAC
AAATGAGAGTTTTCGGTGGAACCGGTGAACCACGCGAGAGCTGGTTAGATGCGTGGGGCAGAGGG
CTCGTAGTACCTGCTAGCGCAGCTATGCTGTGGAAGGGAAGGAGCCTAGCCTGACCCCCTTCTTT
CTTTTTTTTATTCAAAGAAAAAAAGCAGTACAAAGAGATTGGACTCTCGGATGAGACTAAGCAGC
TACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAA
Found at i:177326 original size:58 final size:57
Alignment explanation
Indices: 177228--177338 Score: 127
Period size: 58 Copynumber: 1.9 Consensus size: 57
177218 GCTGACTTGC
*
177228 GAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTA
1 GAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTTATAGT--GAGAGTGCTTTGACTTA
** * * *
177287 GAGCG-TTTCACTTTGTGCAAAGC-TCTCTTGCCTTATAGTGCGAGTGCTTTGA
1 GAGCGCTTTCACTTAATGCAAAGCATCGCGTG-CTTATAGTGAGAGTGCTTTGA
177339 GTGATAGAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
56 12 0.27
57 5 0.11
58 23 0.51
59 5 0.11
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (57 bp):
GAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTTATAGTGAGAGTGCTTTGACTTA
Left flanking sequence: Indices 176728 -- 177227
ACTGAGCAACCTTGAGGCCTACGAGCGTAGAGTGACGACTCTTCTTCGAGCCTACAAGTCAGTGC
TATGCAAGCTGTAACTGCGAGAAATGTCTGCCCTACTGCTACGCAAGCCTACATACGTTCACTAT
TGAAACTCGCTCGCTTCGCTTTCTCTTGTAGGCTCGTTCCGACTCTTCGTCTACACTCGTAGCTC
GCTGTCTACGGAGCTCGCCTTCACTGGAATCAAGAATCTTTCTAAGTGAAAGAAGATCTGTGAAT
CAACCAACGTATAAAAACATTGAAAAGCGAGTGCTTTGTACCAGCGTCACGTCACGTCACGTCAA
TTGATGGAAGGGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTC
AACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGAC
TTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGC
Right flanking sequence: Indices 177339 -- 177838
GTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAA
AGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCTAACGCAAAGCTTTGCGAGTGCTTTG
ACTAATAGCAGTTTCTCGCTCGGCGCCTAAAGCGCACTATGCTCCGCTGCCACAAATGAGAGTTT
TCGGTGGAACCGGTGAACCACGCGAGAGCTGGTTAGATGCGTGGGGCAGAGGGCTCGTAGTACCT
GCTAGCGCAGCTATGCTGTGGAAGGGAAGGAGCCTAGCCTGACCCCCTTCTTTCTTTTTTTTATT
CAAAGAAAAAAAGCAGTACAAAGAGATTGGACTCTCGGATGAGACTAAGCAGCTACCGTTCCGAC
GCGCCCCTGACCTATCTTGATTAAGACCGAAAACTCTCTCCAAAGTGGAGTTGAAGCTGTCATTC
AAATGATATTCATTTCCAGCCAAAAGAAGAAGAACCGTGCTTTCT
Found at i:177458 original size:40 final size:34
Alignment explanation
Indices: 177376--177444 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
177366 AGTGCTTTTC
177376 ACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCT
1 ACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCT
177410 ACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCT
1 ACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCT
177444 A
1 A
177445 ACGCAAAGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.16, C:0.26, G:0.29, T:0.29
Consensus pattern (34 bp):
ACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCT
Left flanking sequence: Indices 176876 -- 177375
CTTTCTCTTGTAGGCTCGTTCCGACTCTTCGTCTACACTCGTAGCTCGCTGTCTACGGAGCTCGC
CTTCACTGGAATCAAGAATCTTTCTAAGTGAAAGAAGATCTGTGAATCAACCAACGTATAAAAAC
ATTGAAAAGCGAGTGCTTTGTACCAGCGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGA
GCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGCGAGCACTCTT
GCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
AATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTTTTA
GTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGCGAG
TGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTC
Right flanking sequence: Indices 177445 -- 177944
ACGCAAAGCTTTGCGAGTGCTTTGACTAATAGCAGTTTCTCGCTCGGCGCCTAAAGCGCACTATG
CTCCGCTGCCACAAATGAGAGTTTTCGGTGGAACCGGTGAACCACGCGAGAGCTGGTTAGATGCG
TGGGGCAGAGGGCTCGTAGTACCTGCTAGCGCAGCTATGCTGTGGAAGGGAAGGAGCCTAGCCTG
ACCCCCTTCTTTCTTTTTTTTATTCAAAGAAAAAAAGCAGTACAAAGAGATTGGACTCTCGGATG
AGACTAAGCAGCTACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAACTCTCTCC
AAAGTGGAGTTGAAGCTGTCATTCAAATGATATTCATTTCCAGCCAAAAGAAGAAGAACCGTGCT
TTCTTTTTGTTTCTTCGTTTCACGAGGGTTATGGAAGGCTGTCAAGTGGAGCCTTCGGAACGTCG
ACTCCACAGGGCGATATCGATCTATGGAAAAGCCCCGAGACTATG
Found at i:185398 original size:41 final size:42
Alignment explanation
Indices: 185347--185476 Score: 172
Period size: 41 Copynumber: 3.0 Consensus size: 42
185337 CTCTCACTAA
185347 AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
1 AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
**
185389 -AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTC
1 AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
185430 AAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
1 -AAG----C-A-CGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
185477 AGTGCTCGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 9
0.85 0.04 0.10
Matches are distributed among these distances:
41 39 0.51
43 2 0.03
47 1 0.01
48 1 0.01
49 33 0.43
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (42 bp):
AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
Left flanking sequence: Indices 184847 -- 185346
CAAGACTGCGATGGCCTTCTCTATGCTCGGACGCTTCCTGCTTGAAGGATTGGATAATGCCCTAT
ATAAGAGCGTCTCAAACAAAGGCATTCTTGCAGTAAGAGCGTAGTCTGTAGCAGCTTCATCTTGT
AATGCCCGCCTATGACCGATAGTCTTGAAGGGTCATTACGGGACCAATGAAAGTGGGCAGGTGTT
GAAACGAAGGTCAGATCCGTCAGTCGGGATGTCAAAACGCTTTCTCGATAGAGTTTGGGGTTGAG
CTTGCTCAACTAGAGGTGGATCTCACGGATGAAATAGAGGAAGGGGTCAGTTACAGTTACAGTTT
CCCGCTCTCAAGCGAGAGTCTCTCAATTTGAATAGAATGGTTCAAAAGGCGTCAAAGAAAATGGA
GGCGGCTACGGCTACGATAACGGTTCTTTAAGACTCAAAGCACTCGCACTATAAGGCAAGAGAGC
TTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAA
Right flanking sequence: Indices 185477 -- 185976
AGTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACGTTGAGCTTTGCTCC
CGACCCTTCCATCAATTGACGTGACGTGACGTGACGTGACGTGACGTGACATGACATGACGTTGC
TTCGCTTTGCGAGTGCTTTGATCACTTGCTTGCTGTTCAGCGAACATGACGGCGCCCTCCTTCTC
TATACCTTTCTTTGATTGACAGAGAGAGACGGATGTTGAATACCCGAAAGAGTCTCGTTCGATTT
ATACGATACGAATTGGTTGGATCGGACAGGGACTTCTATAAAGAAAGATCTTTCCACTCATTCCA
CTACTATAAGTAGAAGTCACGGCATGGGGGGCTCGGAATAAGAACGAGAATCGGTGTCGTGGTGG
TGCTACGAGATGAGATGGCTTTTCGTATAGAAGAATCGATCCGCGGACCTATTGATTGACCATAG
ATGCGAACCGATCGACCGCTATCTAAGAGAAGAGAAGTAGTTCTT
Found at i:185507 original size:19 final size:19
Alignment explanation
Indices: 185479--185545 Score: 125
Period size: 19 Copynumber: 3.5 Consensus size: 19
185469 CTCGCAAGAG
*
185479 TGCTCGCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
185498 TGCTCCCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
185517 TGCTCCCGACGTTGAGCTT
1 TGCTCCCGACGTTGAGCTT
185536 TGCTCCCGAC
1 TGCTCCCGAC
185546 CCTTCCATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
19 47 1.00
ACGTcount: A:0.10, C:0.33, G:0.27, T:0.30
Consensus pattern (19 bp):
TGCTCCCGACGTTGAGCTT
Left flanking sequence: Indices 184979 -- 185478
TGCCCGCCTATGACCGATAGTCTTGAAGGGTCATTACGGGACCAATGAAAGTGGGCAGGTGTTGA
AACGAAGGTCAGATCCGTCAGTCGGGATGTCAAAACGCTTTCTCGATAGAGTTTGGGGTTGAGCT
TGCTCAACTAGAGGTGGATCTCACGGATGAAATAGAGGAAGGGGTCAGTTACAGTTACAGTTTCC
CGCTCTCAAGCGAGAGTCTCTCAATTTGAATAGAATGGTTCAAAAGGCGTCAAAGAAAATGGAGG
CGGCTACGGCTACGATAACGGTTCTTTAAGACTCAAAGCACTCGCACTATAAGGCAAGAGAGCTT
TGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTA
AGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAG
CACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 185546 -- 186045
CCTTCCATCAATTGACGTGACGTGACGTGACGTGACGTGACGTGACATGACATGACGTTGCTTCG
CTTTGCGAGTGCTTTGATCACTTGCTTGCTGTTCAGCGAACATGACGGCGCCCTCCTTCTCTATA
CCTTTCTTTGATTGACAGAGAGAGACGGATGTTGAATACCCGAAAGAGTCTCGTTCGATTTATAC
GATACGAATTGGTTGGATCGGACAGGGACTTCTATAAAGAAAGATCTTTCCACTCATTCCACTAC
TATAAGTAGAAGTCACGGCATGGGGGGCTCGGAATAAGAACGAGAATCGGTGTCGTGGTGGTGCT
ACGAGATGAGATGGCTTTTCGTATAGAAGAATCGATCCGCGGACCTATTGATTGACCATAGATGC
GAACCGATCGACCGCTATCTAAGAGAAGAGAAGTAGTTCTTCTATCGTTCAAGGGCAAGGGGAGA
ACATGTAGCGGCTTGCCTAGATAAAAAACAAAGAAATTATCAAAG
Found at i:185568 original size:5 final size:5
Alignment explanation
Indices: 185558--185603 Score: 74
Period size: 5 Copynumber: 9.2 Consensus size: 5
185548 TTCCATCAAT
* *
185558 TGACG TGACG TGACG TGACG TGACG TGACG TGACA TGACA TGACG T
1 TGACG TGACG TGACG TGACG TGACG TGACG TGACG TGACG TGACG T
185604 TGCTTCGCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.22
Consensus pattern (5 bp):
TGACG
Left flanking sequence: Indices 185058 -- 185557
CCGTCAGTCGGGATGTCAAAACGCTTTCTCGATAGAGTTTGGGGTTGAGCTTGCTCAACTAGAGG
TGGATCTCACGGATGAAATAGAGGAAGGGGTCAGTTACAGTTACAGTTTCCCGCTCTCAAGCGAG
AGTCTCTCAATTTGAATAGAATGGTTCAAAAGGCGTCAAAGAAAATGGAGGCGGCTACGGCTACG
ATAACGGTTCTTTAAGACTCAAAGCACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAA
CGCTCTAAGTCAAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCG
CAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
GCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCCCGACGTTGA
GCTTTGCTCCCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAT
Right flanking sequence: Indices 185604 -- 186103
TGCTTCGCTTTGCGAGTGCTTTGATCACTTGCTTGCTGTTCAGCGAACATGACGGCGCCCTCCTT
CTCTATACCTTTCTTTGATTGACAGAGAGAGACGGATGTTGAATACCCGAAAGAGTCTCGTTCGA
TTTATACGATACGAATTGGTTGGATCGGACAGGGACTTCTATAAAGAAAGATCTTTCCACTCATT
CCACTACTATAAGTAGAAGTCACGGCATGGGGGGCTCGGAATAAGAACGAGAATCGGTGTCGTGG
TGGTGCTACGAGATGAGATGGCTTTTCGTATAGAAGAATCGATCCGCGGACCTATTGATTGACCA
TAGATGCGAACCGATCGACCGCTATCTAAGAGAAGAGAAGTAGTTCTTCTATCGTTCAAGGGCAA
GGGGAGAACATGTAGCGGCTTGCCTAGATAAAAAACAAAGAAATTATCAAAGCAAAGGTTTAGAG
AGATCTTTTTCCGTCTCGGGGCAGGGCGAAAACGAACATAGGATC
Found at i:188297 original size:19 final size:19
Alignment explanation
Indices: 188273--188377 Score: 192
Period size: 19 Copynumber: 5.5 Consensus size: 19
188263 TGATGGAAGG
*
188273 GTCGGGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
*
188292 GTCGGGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
188311 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
188330 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
188349 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
188368 GTCGCGAGCA
1 GTCGCGAGCA
188378 CTCTTGCGAG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
19 85 1.00
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 187773 -- 188272
GTAGCTTGCTTACTCTCCGTCTAGTGTGCGTTGGCGGCAAGGAAGGAGGCATTGGAAAGACTCTA
CTCTAGTACATGGGCATTCGGTATACTAGACTCTACTAGACTAGACTAACTATAGGACGGAGGCA
TTCGAGAGACTAGTCGCTTCTGGCGAAGCTTCTAGAATGCCGACTACAGAGACTCTTTGAGTAAG
CGAAGCTTCTGGCAAAGCAAAGTAGACTCGACTATAGGGGGGTTTGACGTCTGAAGCTTCTTCTG
TTGTGATAGTCGTCAGGCATGATGGGTTGAATGCCGACCACTACGCCAGTGCAGTGGCTTAGAAA
GCGAGCTTCCTAAGAGCAGCGAGTTTCGTAGACTCTTGTAGGCTCGTGTAGACGATCACTCTACG
CTCGTTGTTTACTGTCTACTCTCGATACAACGAGCAAAGCACTCGCAAAGCCCTGACGCAATTTG
CGAGTGTCCATCACGTCACGTCACGTCACGTCAATTGATGGAAGG
Right flanking sequence: Indices 188378 -- 188877
CTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTA
ATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
GCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAA
GCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
GTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGA
GTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCGAGTGCTTTGAT
CACTGGAACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTTTTGAATTTGGA
GGAAATACAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAAC
Found at i:188429 original size:43 final size:44
Alignment explanation
Indices: 188380--188509 Score: 154
Period size: 49 Copynumber: 2.8 Consensus size: 44
188370 CGCGAGCACT
*
188380 CTTGCGAGCGCTTT-GTGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
188423 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGC--T---TTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
188472 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
1 CTTGCGAGCGC-T----TTAATGCAAAGCATCGCGTGC
188510 TTTTAGTGAG
Statistics
Matches: 78, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
43 11 0.14
45 1 0.01
48 4 0.05
49 62 0.79
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (44 bp):
CTTGCGAGCGCTTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
Left flanking sequence: Indices 187880 -- 188379
AGACTAACTATAGGACGGAGGCATTCGAGAGACTAGTCGCTTCTGGCGAAGCTTCTAGAATGCCG
ACTACAGAGACTCTTTGAGTAAGCGAAGCTTCTGGCAAAGCAAAGTAGACTCGACTATAGGGGGG
TTTGACGTCTGAAGCTTCTTCTGTTGTGATAGTCGTCAGGCATGATGGGTTGAATGCCGACCACT
ACGCCAGTGCAGTGGCTTAGAAAGCGAGCTTCCTAAGAGCAGCGAGTTTCGTAGACTCTTGTAGG
CTCGTGTAGACGATCACTCTACGCTCGTTGTTTACTGTCTACTCTCGATACAACGAGCAAAGCAC
TCGCAAAGCCCTGACGCAATTTGCGAGTGTCCATCACGTCACGTCACGTCACGTCAATTGATGGA
AGGGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGC
GAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACT
Right flanking sequence: Indices 188510 -- 189009
TTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGC
TCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGT
GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGT
GCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCGAGTGCTTTGATCA
CTGGAACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTTTTGAATTTGGAGG
AAATACAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAACAGCCCACTGGAGCAATTTGCCA
TTCCCCCATTTCTTCCTATTCATATTGGAAACTTTTCTTTCTCATTCACAAATCCATCTTTGTCC
ATGCTGCTGACTATCAGTTTGGTCCTGCTTCTGGTTCATTTGGTT
Found at i:188452 original size:49 final size:49
Alignment explanation
Indices: 188395--188509 Score: 212
Period size: 49 Copynumber: 2.3 Consensus size: 49
188385 GAGCGCTTTG
**
188395 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAA
1 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
188444 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
188493 TGCAAAGCATCGCGTGC
1 TGCAAAGCATCGCGTGC
188510 TTTTAGTGAG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (49 bp):
TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
Left flanking sequence: Indices 187895 -- 188394
CGGAGGCATTCGAGAGACTAGTCGCTTCTGGCGAAGCTTCTAGAATGCCGACTACAGAGACTCTT
TGAGTAAGCGAAGCTTCTGGCAAAGCAAAGTAGACTCGACTATAGGGGGGTTTGACGTCTGAAGC
TTCTTCTGTTGTGATAGTCGTCAGGCATGATGGGTTGAATGCCGACCACTACGCCAGTGCAGTGG
CTTAGAAAGCGAGCTTCCTAAGAGCAGCGAGTTTCGTAGACTCTTGTAGGCTCGTGTAGACGATC
ACTCTACGCTCGTTGTTTACTGTCTACTCTCGATACAACGAGCAAAGCACTCGCAAAGCCCTGAC
GCAATTTGCGAGTGTCCATCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAA
GCTCAACGTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACG
TCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTG
Right flanking sequence: Indices 188510 -- 189009
TTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGC
TCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGT
GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGT
GCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCGAGTGCTTTGATCA
CTGGAACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTTTTGAATTTGGAGG
AAATACAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAACAGCCCACTGGAGCAATTTGCCA
TTCCCCCATTTCTTCCTATTCATATTGGAAACTTTTCTTTCTCATTCACAAATCCATCTTTGTCC
ATGCTGCTGACTATCAGTTTGGTCCTGCTTCTGGTTCATTTGGTT
Found at i:188647 original size:17 final size:17
Alignment explanation
Indices: 188607--188691 Score: 100
Period size: 17 Copynumber: 4.8 Consensus size: 17
188597 AGCGTGATAT
188607 TGCGAGTGCTTTGAGCG
1 TGCGAGTGCTTTGAGCG
* *
188624 AT-AGAGTGCTTTGAGTG
1 -TGCGAGTGCTTTGAGCG
188641 TGCGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGA---GCG
*
188661 TGCGAGTGCTTTGAGTG
1 TGCGAGTGCTTTGAGCG
188678 TGCGAGTGCTTTGA
1 TGCGAGTGCTTTGA
188692 CTTGCGATAG
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
16 1 0.02
17 40 0.69
18 1 0.02
20 16 0.28
ACGTcount: A:0.14, C:0.14, G:0.38, T:0.34
Consensus pattern (17 bp):
TGCGAGTGCTTTGAGCG
Left flanking sequence: Indices 188107 -- 188606
CTAAGAGCAGCGAGTTTCGTAGACTCTTGTAGGCTCGTGTAGACGATCACTCTACGCTCGTTGTT
TACTGTCTACTCTCGATACAACGAGCAAAGCACTCGCAAAGCCCTGACGCAATTTGCGAGTGTCC
ATCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGTCGGGAGCA
AAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAA
CGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGC
GCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCA
AAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCC
AAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATAT
Right flanking sequence: Indices 188692 -- 189191
CTTGCGATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCG
AGTGCTTTGATCACTGGAACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTT
TTGAATTTGGAGGAAATACAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAACAGCCCACTG
GAGCAATTTGCCATTCCCCCATTTCTTCCTATTCATATTGGAAACTTTTCTTTCTCATTCACAAA
TCCATCTTTGTCCATGCTGCTGACTATCAGTTTGGTCCTGCTTCTGGTTCATTTGGTTACTAAAA
ACGGAGGAGGAAACTCAGTACCAAATGCTTGGCAATCCTTGGTAGAGCTTATTCATGATTTCGTG
CCGAACCCGGTGAACGAACAAATAGGTGGTCTTTCCGGAAATGTTCAACAAAAGTTTTTCCCTCG
CATCTCGGTCACTTTTACTTTTTCGTTATTTCGTAATCCCCAGGG
Found at i:188665 original size:20 final size:20
Alignment explanation
Indices: 188640--188697 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
188630 TGCTTTGAGT
188640 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
*
188660 GTGCGAGTGCTTTGA---GT
1 GTGCGAGTGCTTTGACTTGC
188677 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
188697 G
1 G
188698 ATAGAGTGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 16 0.48
20 17 0.52
ACGTcount: A:0.10, C:0.17, G:0.38, T:0.34
Consensus pattern (20 bp):
GTGCGAGTGCTTTGACTTGC
Left flanking sequence: Indices 188140 -- 188639
CTCGTGTAGACGATCACTCTACGCTCGTTGTTTACTGTCTACTCTCGATACAACGAGCAAAGCAC
TCGCAAAGCCCTGACGCAATTTGCGAGTGTCCATCACGTCACGTCACGTCACGTCAATTGATGGA
AGGGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGC
GAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAA
AGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGT
GCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTT
GACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTT
TGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGT
Right flanking sequence: Indices 188698 -- 189197
ATAGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCGAGTGCT
TTGATCACTGGAACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTTTTGAAT
TTGGAGGAAATACAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAACAGCCCACTGGAGCAA
TTTGCCATTCCCCCATTTCTTCCTATTCATATTGGAAACTTTTCTTTCTCATTCACAAATCCATC
TTTGTCCATGCTGCTGACTATCAGTTTGGTCCTGCTTCTGGTTCATTTGGTTACTAAAAACGGAG
GAGGAAACTCAGTACCAAATGCTTGGCAATCCTTGGTAGAGCTTATTCATGATTTCGTGCCGAAC
CCGGTGAACGAACAAATAGGTGGTCTTTCCGGAAATGTTCAACAAAAGTTTTTCCCTCGCATCTC
GGTCACTTTTACTTTTTCGTTATTTCGTAATCCCCAGGGTATGAT
Found at i:188705 original size:37 final size:37
Alignment explanation
Indices: 188607--188709 Score: 160
Period size: 37 Copynumber: 2.9 Consensus size: 37
188597 AGCGTGATAT
188607 TGCGAGTGCTTTGA---GCGATAGAGTGCTTTGAGTG
1 TGCGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTG
*
188641 TGCGAGTGCTTTGACTTGCG-TGCGAGTGCTTTGAGTG
1 TGCGAGTGCTTTGACTTGCGAT-AGAGTGCTTTGAGTG
188678 TGCGAGTGCTTTGACTTGCGATAGAGTGCTTT
1 TGCGAGTGCTTTGACTTGCGATAGAGTGCTTT
188710 TCACGCTTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
34 14 0.23
36 1 0.02
37 46 0.74
38 1 0.02
ACGTcount: A:0.15, C:0.15, G:0.36, T:0.35
Consensus pattern (37 bp):
TGCGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTG
Left flanking sequence: Indices 188107 -- 188606
CTAAGAGCAGCGAGTTTCGTAGACTCTTGTAGGCTCGTGTAGACGATCACTCTACGCTCGTTGTT
TACTGTCTACTCTCGATACAACGAGCAAAGCACTCGCAAAGCCCTGACGCAATTTGCGAGTGTCC
ATCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTCAACGTCGGGAGCA
AAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAA
CGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGC
GCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCA
AAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCC
AAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATAT
Right flanking sequence: Indices 188710 -- 189209
TCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCTCACATGCTTTGCGAGTGCTTTGATCACTGGA
ACTCCCATGCCTTTCTTGGTCGGACCAAGCCAACCGGCTCTTTCCTTTTGAATTTGGAGGAAATA
CAGGGATGAAAAAAGTGTTGATTACGATTACGCCGAACAGCCCACTGGAGCAATTTGCCATTCCC
CCATTTCTTCCTATTCATATTGGAAACTTTTCTTTCTCATTCACAAATCCATCTTTGTCCATGCT
GCTGACTATCAGTTTGGTCCTGCTTCTGGTTCATTTGGTTACTAAAAACGGAGGAGGAAACTCAG
TACCAAATGCTTGGCAATCCTTGGTAGAGCTTATTCATGATTTCGTGCCGAACCCGGTGAACGAA
CAAATAGGTGGTCTTTCCGGAAATGTTCAACAAAAGTTTTTCCCTCGCATCTCGGTCACTTTTAC
TTTTTCGTTATTTCGTAATCCCCAGGGTATGATACCTTATAGCTT
Found at i:195925 original size:13 final size:13
Alignment explanation
Indices: 195907--195933 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
195897 CAGTAGCACC
195907 AGGTAGTTTCTTT
1 AGGTAGTTTCTTT
195920 AGGTAGTTTCTTT
1 AGGTAGTTTCTTT
195933 A
1 A
195934 TATGTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (13 bp):
AGGTAGTTTCTTT
Left flanking sequence: Indices 195407 -- 195906
AAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTTCAAATTGGAAACGAAATTTCAT
CGACCATCCCTGCCTTTACCCTGGAACGAGACCATAGGCAGAGGCGGGGCAGAGAGCGGAATGAA
ATGTAGCGAGAGAGACAGCAAGCTACGTATCATTTCCTCCCTGGCGTGGATTACTGAGGTCTTCC
CTGATTCTGGCTTGACCAAAACTCTCCGTATCGTTCCAGGGTCGATTCCATTGGGGTGCTCAAAA
AGCTAACACTGGGATAGAGCTCGTACCAAGAAGTCGAGCCTTGCCCAAGACCGACCTCTGCGGGA
CGTACATATATATGACCCGAAAGAAAAGTCCTCTGACACTTGAACTTGAACACGACCATAGCCCG
TACTGGATAGGCCAAAGAGGAGGCACTCAGTCAATAGGAACCAATCCAATTCGAACCGGATATTG
GAATATTGGAAAGACTATTAGTAGATGAACAGAATCAGTAGCACC
Right flanking sequence: Indices 195934 -- 196433
TATGTATTGCCAAAACTTGTTAGCGCTTTAGTTTTCAAATTACGATGCTTTAGTTGAAGTTCCCG
TATACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGAAAGC
GAACAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTCCCGT
AAGCCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAATAAC
CAGTGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAAGCCC
CGAAGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACCAGAA
AAGCCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATAGAAG
CCCTTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAA
Found at i:196465 original size:22 final size:22
Alignment explanation
Indices: 196437--196483 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
196427 ATATAAAAAG
* *
196437 AGAAATTTGAAAGGCAAGGAAT
1 AGAAATTGGAAAGGCAAGAAAT
196459 AGAAATTGGAAAGGCAAGAAAT
1 AGAAATTGGAAAGGCAAGAAAT
196481 AGA
1 AGA
196484 GTAGTTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.28, T:0.15
Consensus pattern (22 bp):
AGAAATTGGAAAGGCAAGAAAT
Left flanking sequence: Indices 195937 -- 196436
GTATTGCCAAAACTTGTTAGCGCTTTAGTTTTCAAATTACGATGCTTTAGTTGAAGTTCCCGTAT
ACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGAAAGCGAA
CAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTCCCGTAAG
CCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAATAACCAG
TGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAAGCCCCGA
AGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACCAGAAAAG
CCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATAGAAGCCC
TTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAAAAG
Right flanking sequence: Indices 196484 -- 196983
GTAGTTGATTCATTCAATAGACTCCGTTGTATGTCAAATGATTCAATAGACTCCGTTGTATGTCA
AACTCACCCAATCTTTCAAGGGGTTGCCGAAAGAAAGTTCGAAAGCGCATAACGTGCGTTTCAGT
TCAAGTTCAAGTCAGGGGAAAGGAATGTCAAGCCTAGTATAAGACCGCTCTCAAGCAAGCCAGGA
TCAGACCACGGCCACAGGGTCAAGCCAAGCTAGTAGTCAGCCGTGGGTTAGCCCGTTGTCAAGTT
CCTTCTTCCCCAATTTCAGGGCTCTGAGACTTTCTCTGATCCTTCTGACTCCGTCCTTCTCTTTT
CACGTGCCATACGATACCTATCCCTCTTTAGCAAGGGCGCGAGTGACGCATGGTGACAAGGCCCT
GTGTCAATCTTCAGGGCTGAAGGTCGCGTATTGTAGGGAATCGGAAAGGAAGCGAGGGATAAGTC
AGTAGGTACGGGCGAAGGTCTAGTACCTGTTTCAAGCTCGCAAGG
Found at i:196537 original size:29 final size:29
Alignment explanation
Indices: 196495--196550 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
196485 TAGTTGATTC
196495 ATTCAATAGACTCCGTTGTATGTCAAATG
1 ATTCAATAGACTCCGTTGTATGTCAAATG
196524 ATTCAATAGACTCCGTTGTATGTCAAA
1 ATTCAATAGACTCCGTTGTATGTCAAA
196551 CTCACCCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (29 bp):
ATTCAATAGACTCCGTTGTATGTCAAATG
Left flanking sequence: Indices 195995 -- 196494
CCCGTATACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGA
AAGCGAACAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTC
CCGTAAGCCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAA
TAACCAGTGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAA
GCCCCGAAGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACC
AGAAAAGCCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATA
GAAGCCCTTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAAAAGAGAAATTTGAAAG
GCAAGGAATAGAAATTGGAAAGGCAAGAAATAGAGTAGTTGATTC
Right flanking sequence: Indices 196551 -- 197050
CTCACCCAATCTTTCAAGGGGTTGCCGAAAGAAAGTTCGAAAGCGCATAACGTGCGTTTCAGTTC
AAGTTCAAGTCAGGGGAAAGGAATGTCAAGCCTAGTATAAGACCGCTCTCAAGCAAGCCAGGATC
AGACCACGGCCACAGGGTCAAGCCAAGCTAGTAGTCAGCCGTGGGTTAGCCCGTTGTCAAGTTCC
TTCTTCCCCAATTTCAGGGCTCTGAGACTTTCTCTGATCCTTCTGACTCCGTCCTTCTCTTTTCA
CGTGCCATACGATACCTATCCCTCTTTAGCAAGGGCGCGAGTGACGCATGGTGACAAGGCCCTGT
GTCAATCTTCAGGGCTGAAGGTCGCGTATTGTAGGGAATCGGAAAGGAAGCGAGGGATAAGTCAG
TAGGTACGGGCGAAGGTCTAGTACCTGTTTCAAGCTCGCAAGGTATGACATCGATCCCTTAAATC
AAGCTATCGACTATCGAAAGATAGACTCCGTGCCTGTTTAGAGTA
Found at i:201830 original size:20 final size:18
Alignment explanation
Indices: 201807--201856 Score: 66
Period size: 17 Copynumber: 2.7 Consensus size: 18
201797 CAAAGCGTGA
*
201807 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCAC-C-ACTC
201827 AAAGCACTCGCA-CACTC
1 AAAGCACTCGCACCACTC
201844 AAAGCACTCGCAC
1 AAAGCACTCGCAC
201857 TATAAGGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 15 0.54
18 1 0.04
20 12 0.43
ACGTcount: A:0.36, C:0.38, G:0.16, T:0.10
Consensus pattern (18 bp):
AAAGCACTCGCACCACTC
Left flanking sequence: Indices 201307 -- 201806
TTCTCTTCTCTTATTCACTTGTCCGTCCTCAGCATGCTTAGGCGTGGGCAGTGACGCGGCTGTAG
CTGTTCAGGGGGGAGGAGCAGAGAAGTACCAGCCAGTAGTCAGGGACTGGGTCTGGTTAGAAGGT
GTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAGGCTGCCAACTCATCTTTTTGGCTGGGCGCA
AGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTACATAGCCGCAGGTTGTCTAGTATGGCTGCAT
CTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCTCATTGACAGGGCCGGAATT
GGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCTTTGGTATTTTTGGATGACT
TTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCAGAAACCAAACTCGCAAAGC
GAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 201857 -- 202356
TATAAGGCAAGAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGC
ACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCA
AGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTG
ACGTGACCTGACGTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGA
GCCTTCGGAACTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGAT
GGATTTTTTGAAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAG
GTTGATAATTGAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGG
GCTGCCGCTTGCAAAGCTTACATGAAAGATAGCTTCTTCAAGATA
Found at i:201943 original size:58 final size:57
Alignment explanation
Indices: 201842--201952 Score: 136
Period size: 56 Copynumber: 1.9 Consensus size: 57
201832 ACTCGCACAC
*
201842 TCAAAGCACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAA-CGCTCTAAG
1 TCAAAGCACTCGCACTATAAAGCAAGAGAGCTTTGCACAAAGTGAAAGCGCTCTAAG
* * **
201898 TCAAAGCACTCGCAC-ACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTC
1 TCAAAGCACTCGCACTA-T-AAAGCAAGAGA-GCTTTGCACAAAGTGAAAGCGCTC
201953 GCAAGTCAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 1 0.02
56 16 0.35
57 8 0.17
58 16 0.35
59 5 0.11
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (57 bp):
TCAAAGCACTCGCACTATAAAGCAAGAGAGCTTTGCACAAAGTGAAAGCGCTCTAAG
Left flanking sequence: Indices 201342 -- 201841
GCTTAGGCGTGGGCAGTGACGCGGCTGTAGCTGTTCAGGGGGGAGGAGCAGAGAAGTACCAGCCA
GTAGTCAGGGACTGGGTCTGGTTAGAAGGTGTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAG
GCTGCCAACTCATCTTTTTGGCTGGGCGCAAGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTAC
ATAGCCGCAGGTTGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGG
TGTCCAAGGCTCATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCA
GCTTTGACTCTTTGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATT
TGATCAATTCAGAAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCG
CAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACAC
Right flanking sequence: Indices 201953 -- 202452
GCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCAC
TTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTGACGTGACCTGACGTGACGTGACGTGACGTTC
TGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAAGG
CCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTGGT
CACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTACT
AAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGATA
GCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGACTAGCTAGCTACCTAACAAT
AGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATC
Found at i:201975 original size:41 final size:41
Alignment explanation
Indices: 201919--201998 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
201909 GCACACTAAA
201919 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
1 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
**
201960 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
1 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
201999 AGTGCTCGCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (41 bp):
AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
Left flanking sequence: Indices 201419 -- 201918
TGGGTCTGGTTAGAAGGTGTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAGGCTGCCAACTCA
TCTTTTTGGCTGGGCGCAAGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTACATAGCCGCAGGT
TGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCTC
ATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCTT
TGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCAG
AAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAA
AGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGCT
TTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAA
Right flanking sequence: Indices 201999 -- 202498
AGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTGACGTGACCTGAC
GTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACT
GGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAA
GAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGA
GAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGC
AAAGCTTACATGAAAGATAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGAC
TAGCTAGCTACCTAACAATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATCC
AACATGCCTCAATAAAAAAGCTTCACTTCCAACTATCCTGTTCAA
Found at i:202058 original size:5 final size:5
Alignment explanation
Indices: 202048--202080 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
202038 GAGCTTTGCT
*
202048 CGTGA CGTGA CCTGA CGTGA CGTGA CGTGA CGT
1 CGTGA CGTGA CGTGA CGTGA CGTGA CGTGA CGT
202081 TCTGTCAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (5 bp):
CGTGA
Left flanking sequence: Indices 201548 -- 202047
TTGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCT
CATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCT
TTGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCA
GAAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAA
AAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGC
TTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGCACGCGATGCTTTGCAT
TAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTG
CTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCT
Right flanking sequence: Indices 202081 -- 202580
TCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAA
GGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTG
GTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTA
CTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGA
TAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGACTAGCTAGCTACCTAACA
ATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAA
AAGCTTCACTTCCAACTATCCTGTTCAAACTATCTTCTCCTTGCTCCCTTCCAACAAGTCAGTCT
TTTTTCATTCAGGGAATTTCTTTATCTATCTCTGGCTTTTATGGA
Found at i:202409 original size:26 final size:26
Alignment explanation
Indices: 202349--202423 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
202339 GATAGCTTCT
* * *
202349 TCAAGATAGCTGACTAGCTACCTAAT
1 TCAAAATAGCTGACTAGCTAGCTAAC
* *
202375 TCAAGATAGCTGACTAGCTAGCTACC
1 TCAAAATAGCTGACTAGCTAGCTAAC
*
202401 T-AACAATAGCCTGACTCGCTAGC
1 TCAA-AATAG-CTGACTAGCTAGC
202424 ATTATGGAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 28 0.67
27 12 0.29
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (26 bp):
TCAAAATAGCTGACTAGCTAGCTAAC
Left flanking sequence: Indices 201849 -- 202348
ACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACA
CTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCAT
TAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTT
TGCTCGTGACGTGACCTGACGTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCG
ACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCC
GCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGC
GCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGT
TAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGATAGCTTCT
Right flanking sequence: Indices 202424 -- 202923
ATTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAAAAGCTTCACTTCCAACTA
TCCTGTTCAAACTATCTTCTCCTTGCTCCCTTCCAACAAGTCAGTCTTTTTTCATTCAGGGAATT
TCTTTATCTATCTCTGGCTTTTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAA
AAAGCTTCACTTCAAACTATCTTGACTTCAAACTATCTTCCTGGCTGAAAACGTCAAAAGGACTT
GAGCATTCGCACTTGGGTTGGTTCATTTTCTATACGTTCACATAAGTGAATAGAAAGTGAGTGAG
CTAATATAATAAGAAAGATCTCATCAAAGAGATGTGAAGGAGTACGCCCGGTTCACCAGGTTCTA
CCTTTAGCAGGCCCAATCCACCTAAAAAGAAGAGTTTGATCCTGGCTCAGAACGAACGCTAGCTA
TATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGG
Found at i:202648 original size:16 final size:16
Alignment explanation
Indices: 202627--202657 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
202617 AAAAAGCTTC
202627 ACTTCAAACTATCTTG
1 ACTTCAAACTATCTTG
202643 ACTTCAAACTATCTT
1 ACTTCAAACTATCTT
202658 CCTGGCTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
ACTTCAAACTATCTTG
Left flanking sequence: Indices 202127 -- 202626
CTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTG
AAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATT
GAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTT
GCAAAGCTTACATGAAAGATAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTG
ACTAGCTAGCTACCTAACAATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAAT
CCAACATGCCTCAATAAAAAAGCTTCACTTCCAACTATCCTGTTCAAACTATCTTCTCCTTGCTC
CCTTCCAACAAGTCAGTCTTTTTTCATTCAGGGAATTTCTTTATCTATCTCTGGCTTTTATGGAG
GGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAAAAGCTTC
Right flanking sequence: Indices 202658 -- 203157
CCTGGCTGAAAACGTCAAAAGGACTTGAGCATTCGCACTTGGGTTGGTTCATTTTCTATACGTTC
ACATAAGTGAATAGAAAGTGAGTGAGCTAATATAATAAGAAAGATCTCATCAAAGAGATGTGAAG
GAGTACGCCCGGTTCACCAGGTTCTACCTTTAGCAGGCCCAATCCACCTAAAAAGAAGAGTTTGA
TCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGA
GCTGGGCAGAAGGAAAAGAGGCTCCTAGCTTGATCAAGGTAGCTTGTCTCGCCCGTACTGTGGAG
GGAACGGCAATTTCCCTCCACAGGAGGTGGGAACAGTTGAGAACAAAGTGGCGAACGGGTGCGTA
ACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAATCAAGCTAAAAAGCGCTGTTTGAT
GAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAA
Found at i:207955 original size:35 final size:35
Alignment explanation
Indices: 207904--207992 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
207894 AGCGCTTGAA
207904 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
**
207939 CTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
207974 CTTAATGCAAAGCATCGCG
1 CTTAATGCAAAGCATCGCG
207993 ATAGAGTGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (35 bp):
CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
Left flanking sequence: Indices 207404 -- 207903
CAACTCCTCGGGTGGGGAAAGAAGCCTATCTGATCCCGAAACCTGAGATACTGGAGGACTGATTC
GAGTGGATCCTGTTGCCAGAAAGTGCTCTTTCCTAGTCGGGAAAAGAGGGCGCTAAGCATGAAAG
GGGTACTTAATCTATAGAAAACCAAACCTATCACATGCTTTTGACCCGGTAACTAACTCGTTATA
GGCAGTAACTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAAGAATTGAG
GGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTAT
TCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCA
ACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGT
CGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAA
Right flanking sequence: Indices 207993 -- 208492
ATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
TGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCT
TTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTG
CGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAG
TGCTTTGATCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACA
GAAGCGTGCTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAA
CAAGGTGGAATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAG
CGAAAGGCCTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGG
Found at i:208016 original size:43 final size:46
Alignment explanation
Indices: 207961--208070 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 46
207951 CATCGCGTGC
207961 TGACTTGCGAGCG-CTTAATGCAAAGCATCGCG-ATA-GAGTGCTT
1 TGACTTGCGAGCGACTTAATGCAAAGCATCGCGTATATGAGTGCTT
208004 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
1 TGACTTGCGA--GC--G-ACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
208058 TGACTTGCGAGCG
1 TGACTTGCGAGCG
208071 TTTCACTTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
43 10 0.18
45 2 0.04
47 1 0.02
49 19 0.34
50 4 0.07
52 2 0.04
54 18 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (46 bp):
TGACTTGCGAGCGACTTAATGCAAAGCATCGCGTATATGAGTGCTT
Left flanking sequence: Indices 207461 -- 207960
ACTGATTCGAGTGGATCCTGTTGCCAGAAAGTGCTCTTTCCTAGTCGGGAAAAGAGGGCGCTAAG
CATGAAAGGGGTACTTAATCTATAGAAAACCAAACCTATCACATGCTTTTGACCCGGTAACTAAC
TCGTTATAGGCAGTAACTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAA
GAATTGAGGGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTT
TTGTCTATTCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGAC
GAAATTCAACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTC
GGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGC
Right flanking sequence: Indices 208071 -- 208570
TTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATAT
TGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTT
TGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCAAT
GAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTGCTTTA
GGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGGAATCC
AAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGCCTACA
CCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCAGTCCC
CAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCT
Found at i:208194 original size:20 final size:20
Alignment explanation
Indices: 208169--208260 Score: 154
Period size: 20 Copynumber: 4.8 Consensus size: 20
208159 TGCTTTGAGT
208169 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
*
208189 GTGCGAGTGCTTTGA---GT
1 GTGCGAGTGCTTTGACTTGC
208206 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
208226 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
208246 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
208261 TCAATGAAGA
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
20 51 0.76
ACGTcount: A:0.11, C:0.17, G:0.37, T:0.35
Consensus pattern (20 bp):
GTGCGAGTGCTTTGACTTGC
Left flanking sequence: Indices 207669 -- 208168
TAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTATTCTCT
GGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCAACCTT
CGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGTCGCGA
GCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGA
CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGA
TAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTT
GACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTT
TGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGT
Right flanking sequence: Indices 208261 -- 208760
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:208206 original size:37 final size:37
Alignment explanation
Indices: 208156--208260 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
208146 TTGAGCGATA
208156 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
208193 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
*
208230 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGA---GTGTGCGAGTGCTTTGA
208261 TCAATGAAGA
Statistics
Matches: 64, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
37 48 0.75
40 16 0.25
ACGTcount: A:0.11, C:0.16, G:0.37, T:0.35
Consensus pattern (37 bp):
GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
Left flanking sequence: Indices 207656 -- 208155
GAATTGAGGGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTT
TTGTCTATTCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGAC
GAAATTCAACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTC
GGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATG
CAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATA
TTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTG
CGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATA
Right flanking sequence: Indices 208261 -- 208760
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:208230 original size:57 final size:57
Alignment explanation
Indices: 208107--208260 Score: 190
Period size: 57 Copynumber: 2.7 Consensus size: 57
208097 GCAAAGCTCT
* **
208107 CTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGA-CTTG--CGTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
* * *
208167 ---GTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG-TGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGAT-AGAGTGCTTTGA
208221 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
208261 TCAATGAAGA
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
53 1 0.01
54 27 0.33
56 3 0.04
57 52 0.63
ACGTcount: A:0.13, C:0.16, G:0.36, T:0.34
Consensus pattern (57 bp):
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 207607 -- 208106
CTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAAGAATTGAGGGAGTTAG
CACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTATTCTCTGGA
AACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCAACCTTCGA
TAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGTCGCGAGCA
AAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTT
GCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAG
AGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGAC
TTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCT
Right flanking sequence: Indices 208261 -- 208760
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:210549 original size:49 final size:47
Alignment explanation
Indices: 210475--210649 Score: 265
Period size: 49 Copynumber: 3.8 Consensus size: 47
210465 GCAAAGCTAT
210475 CTTGCGAGCGCTT-AACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-T-GAGTGCTTTGA
210523 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC----GTGC--TGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGTGCTTTGA
210564 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT--GAGTGCTTTGA
210613 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
210650 CTTTTAGTGA
Statistics
Matches: 118, Mismatches: 0, Indels: 19
0.86 0.00 0.14
Matches are distributed among these distances:
41 37 0.31
43 4 0.03
47 5 0.04
48 13 0.11
49 59 0.50
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (47 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGTGCTTTGA
Left flanking sequence: Indices 209975 -- 210474
ATGGGGGCTTGGTAGGGAAGAGCTAATGGAAATAACTAAGCGTTGACCGTGCGCAACCCCTCTTC
AAGCGATTTCAGCACTGAAAGCAAAAAAGAGAGAGAAAGGTTATCGAGATTATCAATCGTTGAAA
GTGTGCGGGAAGCTCGGGAAACAAGACCCGTCCCCCGAAGGGAGCTTCGGAAGCTGGGGAGGCAG
TGGGTTCGAAGAGAGTGTGTTAAGCACGCTGCTCCGTGAATAGTTTCGTACATTCCCTCGGGTGG
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 210650 -- 211149
CTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAG
TGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGCGCGAGTGCTT
TGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTG
CGTGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCT
TCGGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATC
CCTTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTT
ATAGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATAC
AACAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAAC
Found at i:210627 original size:90 final size:89
Alignment explanation
Indices: 210475--210651 Score: 320
Period size: 90 Copynumber: 2.0 Consensus size: 89
210465 GCAAAGCTAT
210475 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
1 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
210540 TTAATGCAAAGCATCGCGTGCTGA
66 TTAATGCAAAGCATCGCGTGCTGA
*
210564 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTGA
1 CTTGCGAGCGCTT-AACTTAATGCAAAGCATCGCGAT-AGAGTGCTTTGACTTGCGAGCGCTTGA
210628 ACTTAATGCAAAGCATCGCGTGCT
64 ACTTAATGCAAAGCATCGCGTGCT
210652 TTTAGTGAGA
Statistics
Matches: 85, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
89 14 0.16
90 71 0.84
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (89 bp):
CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
TTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 209975 -- 210474
ATGGGGGCTTGGTAGGGAAGAGCTAATGGAAATAACTAAGCGTTGACCGTGCGCAACCCCTCTTC
AAGCGATTTCAGCACTGAAAGCAAAAAAGAGAGAGAAAGGTTATCGAGATTATCAATCGTTGAAA
GTGTGCGGGAAGCTCGGGAAACAAGACCCGTCCCCCGAAGGGAGCTTCGGAAGCTGGGGAGGCAG
TGGGTTCGAAGAGAGTGTGTTAAGCACGCTGCTCCGTGAATAGTTTCGTACATTCCCTCGGGTGG
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 210652 -- 211151
TTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTG
CGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGCGCGAGTGCTTTG
ACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCG
TGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTC
GGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCC
TTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTAT
AGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAA
CAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAACCA
Found at i:210740 original size:17 final size:17
Alignment explanation
Indices: 210718--210782 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
210708 CTTATAGTGC
210718 GAGTGCTTTGAGTGATA
1 GAGTGCTTTGAGTGATA
*
210735 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGA---GTGATA
***
210755 GAGTGCTTTGAGTGCGC
1 GAGTGCTTTGAGTGATA
210772 GAGTGCTTTGA
1 GAGTGCTTTGA
210783 CTTGCGTGCG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 24 0.60
20 16 0.40
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.34
Consensus pattern (17 bp):
GAGTGCTTTGAGTGATA
Left flanking sequence: Indices 210218 -- 210717
TACATTCCCTCGGGTGGCTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCT
CAGTTCTAAACGAGTGACCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGC
AAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTG
CAAAGCCCCCAACTTTCTGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTT
GCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTA
ATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGC
TTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGA
CTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 210783 -- 211282
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCGT
GCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTCG
GTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCCT
TCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTATA
GATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAAC
AGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAACCAAACTGGTGAACGCGAGCGGTT
GGACACCGCGAAGCTTGTCGTTTGAGACATTCTTCCGTAAGTTCTGGAGGACCCTTGAAAGAAGC
CCGTCCCTCGCCTTTCGCCTATCCAGTGCGGGGGACGTCTTGATA
Found at i:210756 original size:20 final size:19
Alignment explanation
Indices: 210735--210824 Score: 121
Period size: 20 Copynumber: 4.7 Consensus size: 19
210725 TTGAGTGATA
*
210735 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGACTTGCG-TC
*
210755 GAGTGCTTTGA-GTGCG-C
1 GAGTGCTTTGACTTGCGTC
210772 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGT-C
210792 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGT-C
210812 GAGTGCTTTGACT
1 GAGTGCTTTGACT
210825 CTTCCTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.17
18 4 0.06
19 4 0.06
20 45 0.70
ACGTcount: A:0.13, C:0.18, G:0.34, T:0.34
Consensus pattern (19 bp):
GAGTGCTTTGACTTGCGTC
Left flanking sequence: Indices 210235 -- 210734
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTTAACTTAA
TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
CTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTT
TGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATA
Right flanking sequence: Indices 210825 -- 211324
CTTCCTTATATTTGCGAGTGCGTGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTG
GAACTGAACGCGCTCTATCTTCGGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTT
GTCCAAGCCCTTCCTTTATCCCTTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCA
TGTCAGTCTAATCTAACCTTATAGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAG
TCCGTCACTAACGAGCATACAACAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAAC
CAAACTGGTGAACGCGAGCGGTTGGACACCGCGAAGCTTGTCGTTTGAGACATTCTTCCGTAAGT
TCTGGAGGACCCTTGAAAGAAGCCCGTCCCTCGCCTTTCGCCTATCCAGTGCGGGGGACGTCTTG
ATAGACGGATGGATCCTTCTTTCATTACCATCCTGACCGTCTCCC
Found at i:210759 original size:37 final size:37
Alignment explanation
Indices: 210718--210802 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
210708 CTTATAGTGC
*
210718 GAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGAT-A
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCG-TGA
* * *
210755 GAGTGCTTTGAGTGCGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGA
210792 GAGTGCTTTGA
1 GAGTGCTTTGA
210803 CTTGCGTGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.16, C:0.14, G:0.35, T:0.34
Consensus pattern (37 bp):
GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGA
Left flanking sequence: Indices 210218 -- 210717
TACATTCCCTCGGGTGGCTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCT
CAGTTCTAAACGAGTGACCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGC
AAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTG
CAAAGCCCCCAACTTTCTGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTT
GCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTA
ATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGC
TTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGA
CTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 210803 -- 211302
CTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCGTGCTAGGTTCCACCTTCAGTT
TCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTCGGTAGCCCGGGAGGACGACGT
CCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCCTTCATGCCTGAAACATGCCCT
TCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTATAGATTGATCACAGTAACCAAC
AACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAACAGATTAGTGGTCGGACTCCT
CTAACTTAGGAAGTGGCATAACCAAACTGGTGAACGCGAGCGGTTGGACACCGCGAAGCTTGTCG
TTTGAGACATTCTTCCGTAAGTTCTGGAGGACCCTTGAAAGAAGCCCGTCCCTCGCCTTTCGCCT
ATCCAGTGCGGGGGACGTCTTGATAGACGGATGGATCCTTCTTTC
Found at i:212895 original size:19 final size:19
Alignment explanation
Indices: 212871--212909 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
212861 TGATGGAAGG
212871 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
212890 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
212909 G
1 G
212910 AGCAAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.28, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 212371 -- 212870
AGTGCTTTTCTCACTGCCCGCCCGGCCCGTATCTTCAATCTTAAGTAAAGTTCAGTCAAGTCAAT
GAACAGCCCAACCTCTTTGTTTGAAGGCCAGGAAGCTTCCACTTGTGGAAGGCCTTGGCCTCCCC
CTCATTCCGAAACACAACCAAACGACTTGCAACTCTCTCCACTTCTCTTTCGTCGTCGTTCTAAG
CGGACTTGTTGGCTATAGCCAAGCCACTTCTCCTTTTTCGGCGTATAGCGCGGACTAAGCGGACT
TGTTGTCTATAGCCAATTCTCTTTCTTTGATAGCGGTCATAGGGGGGTTCAGAAAGGATCTGATC
TACGATAGAGACGGAAACCTGTGCGGGGGTAGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGG
ATTGTGAATCCACCACGCGCGGGTTCAATCCCCGTCGTTCGCCCATCAATAAATGGACCATTTGC
TTGCGCCGGAGACAGAAACGTCACGTCACGTCAATTGATGGAAGG
Right flanking sequence: Indices 212910 -- 213409
AGCAAAGTGAAACGGAAGGGTCGCGAGCAAAGCTAAACGGAAGGGTCGCGAGCAAAGCTCAACGT
CGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCG
TGCGAGTGCTTTGTACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCCTTATATT
TCTTGCGAGTGCGTGCTTTGAGAGTGACGGATCAAAGGTTGCGGGAACGAGACGCTTTCGTTGTT
TATGGATGAAGAAGTCAGCCTCACGACTGGAAGGTGTAATGTAAGTGAAGAGAATAGAAGCCCTT
AGCCTTTTCTATATCTTTCTATTAAGCTGACTTGGTTGCTTGCTTGAGTAGTGTCATTTCCAAAG
GTTTGAACCGACGGTTCGCAACGGACCGGCCTGCGGATTCACTCTCTTAAGGACTGGAGCCTAGC
ACAAAGCCTAGCGTAGGGCATGGAGTGACGACTCTTCTTCTATGG
Found at i:212947 original size:25 final size:25
Alignment explanation
Indices: 212908--212973 Score: 107
Period size: 25 Copynumber: 2.6 Consensus size: 25
212898 CAAAGCTCAA
212908 CGAGCAAAG-TGAAACGGAAGGGTCG
1 CGAGCAAAGCT-AAACGGAAGGGTCG
212933 CGAGCAAAGCTAAACGGAAGGGTCG
1 CGAGCAAAGCTAAACGGAAGGGTCG
*
212958 CGAGCAAAGCTCAACG
1 CGAGCAAAGCTAAACG
212974 TCGCGAGCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.35, T:0.08
Consensus pattern (25 bp):
CGAGCAAAGCTAAACGGAAGGGTCG
Left flanking sequence: Indices 212408 -- 212907
ATCTTAAGTAAAGTTCAGTCAAGTCAATGAACAGCCCAACCTCTTTGTTTGAAGGCCAGGAAGCT
TCCACTTGTGGAAGGCCTTGGCCTCCCCCTCATTCCGAAACACAACCAAACGACTTGCAACTCTC
TCCACTTCTCTTTCGTCGTCGTTCTAAGCGGACTTGTTGGCTATAGCCAAGCCACTTCTCCTTTT
TCGGCGTATAGCGCGGACTAAGCGGACTTGTTGTCTATAGCCAATTCTCTTTCTTTGATAGCGGT
CATAGGGGGGTTCAGAAAGGATCTGATCTACGATAGAGACGGAAACCTGTGCGGGGGTAGGGGCG
GATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCACGCGCGGGTTCAATCCCCGTCG
TTCGCCCATCAATAAATGGACCATTTGCTTGCGCCGGAGACAGAAACGTCACGTCACGTCAATTG
ATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAA
Right flanking sequence: Indices 212974 -- 213473
TCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGC
GTGCGAGTGCTTTGTACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCCTTATAT
TTCTTGCGAGTGCGTGCTTTGAGAGTGACGGATCAAAGGTTGCGGGAACGAGACGCTTTCGTTGT
TTATGGATGAAGAAGTCAGCCTCACGACTGGAAGGTGTAATGTAAGTGAAGAGAATAGAAGCCCT
TAGCCTTTTCTATATCTTTCTATTAAGCTGACTTGGTTGCTTGCTTGAGTAGTGTCATTTCCAAA
GGTTTGAACCGACGGTTCGCAACGGACCGGCCTGCGGATTCACTCTCTTAAGGACTGGAGCCTAG
CACAAAGCCTAGCGTAGGGCATGGAGTGACGACTCTTCTTCTATGGAGCCTACAACTGCTACGCG
AGCCGTCAGTGACGACTCTTCTTCTATGGAGCCTACCACTTCTGC
Found at i:217612 original size:20 final size:20
Alignment explanation
Indices: 217589--217654 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
217579 CAAAGCGTGA
217589 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
*
217609 AAAGCACTCGCA--C-ACTC
1 AAAGCACTCGCACGCAAGTC
*
217626 AAAGCACTC-TATCGCAAGTC
1 AAAGCACTCGCA-CGCAAGTC
217646 AAAGCACTC
1 AAAGCACTC
217655 TATCGCTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 1 0.03
17 12 0.31
18 1 0.03
19 1 0.03
20 24 0.62
ACGTcount: A:0.36, C:0.35, G:0.15, T:0.14
Consensus pattern (20 bp):
AAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 217089 -- 217588
GGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAA
GAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACT
TCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACT
TTCAAACCTATGAGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCT
GTCTCTCTTTGTTCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCG
CATATGTCAGGTAAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGG
AAGAGCGGAGCTCCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGC
TTCGCGGCGAGCGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 217655 -- 218154
TATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACT
CGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTT
CAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCT
GTTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTG
GGCTTTGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGG
GGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTG
GCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGG
TAGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCA
Found at i:217629 original size:17 final size:16
Alignment explanation
Indices: 217601--217724 Score: 81
Period size: 16 Copynumber: 7.3 Consensus size: 16
217591 AGCACTCGCA
*
217601 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
217617 CGCACACTCAAAGCACTCTAT
1 CGCA-ACTCAAAGCA--C--T
*
217638 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
* *
217654 C-TATCGCTCAAAGCACT
1 CGCA--ACTCAAAGCACT
*
217671 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
* *
217687 C-TATCGCTCAAAGCACT
1 CGCA--ACTCAAAGCACT
*
217704 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
217720 CGCAA
1 CGCAA
217725 TATACGCGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
15 2 0.02
16 32 0.39
17 31 0.37
18 3 0.04
19 1 0.01
20 9 0.11
21 5 0.06
ACGTcount: A:0.35, C:0.34, G:0.15, T:0.16
Consensus pattern (16 bp):
CGCAACTCAAAGCACT
Left flanking sequence: Indices 217101 -- 217600
GTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAAGAACTGCTGCGC
CGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACTTCGATAGGCGAG
AGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACTTTCAAACCTATG
AGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGT
TCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGT
AAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCT
CCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGC
GCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCA
Right flanking sequence: Indices 217725 -- 218224
TATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGC
GCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCTGTTGA
GGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTGGGCTT
TGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCT
TTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTGGCCAA
GCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGGTAGAG
GAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCCTGTCCCCGCCTAAG
AAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTCGGTT
Found at i:217679 original size:33 final size:33
Alignment explanation
Indices: 217601--217720 Score: 170
Period size: 33 Copynumber: 3.5 Consensus size: 33
217591 AGCACTCGCA
* *
217601 CGCAAGTCAAAGCACTCGCA-CACTCAAAGCACTCTAT
1 CGCAAGTCAAAGCACTC-TATCGCTCAAAGCA--C--T
217638 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
1 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
217671 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
1 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
217704 CGCAAGTCAAAGCACTC
1 CGCAAGTCAAAGCACTC
217721 GCAATATACG
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
33 51 0.64
35 1 0.01
36 1 0.01
37 27 0.34
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.17
Consensus pattern (33 bp):
CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
Left flanking sequence: Indices 217101 -- 217600
GTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAAGAACTGCTGCGC
CGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACTTCGATAGGCGAG
AGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACTTTCAAACCTATG
AGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGT
TCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGT
AAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCT
CCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGC
GCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCA
Right flanking sequence: Indices 217721 -- 218220
GCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTC
AAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCTG
TTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTGG
GCTTTGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGG
GGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTGG
CCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGGT
AGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCCTGTCCCCGCC
TAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTC
Found at i:217825 original size:19 final size:19
Alignment explanation
Indices: 217801--217884 Score: 89
Period size: 19 Copynumber: 4.3 Consensus size: 19
217791 CTCGCAAGAG
217801 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
*
217820 TGCTCGCGACGTTTCA-CTT
1 TGCTCGCGACG-TTGAGCTT
* **
217839 TGCTCCCTTCTGTTGAGGCTT
1 TGCTCGCGAC-GTTGA-GCTT
*
217860 TGCTCGCGACGTTTAGCTT
1 TGCTCGCGACGTTGAGCTT
217879 TGCTCG
1 TGCTCG
217885 TTGAGCTTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
19 34 0.65
20 8 0.15
21 10 0.19
ACGTcount: A:0.08, C:0.29, G:0.26, T:0.37
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 217301 -- 217800
AACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGTTCCTA
AAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGTAAGGC
GGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCTCCAAC
CAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGCGCTTT
GCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTC
AAAGCACTCTATCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTAT
CGCTCAAAGCACTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAG
Right flanking sequence: Indices 217885 -- 218384
TTGAGCTTTGCTCCCGACCCTTCTCGTTTGGGCTTTGCACAATAACACTCGCAAGGGGCTTTGCA
CAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAG
AGTGGGGGCTTTGCTCGTGACGTGACGTTGGCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATA
GTGAAAGAAAGAGAGGGGGAACAAGCGGGGTAGAGGAATTGGTCGACTCATCAGGCTCATGACCT
GAAGATTGCAGGTTCGAATCCTGTCCCCGCCTAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCT
GCTTCCAAGTCGGTTAGAATGATGGCCATGCTCCGAGTAAAGCCACTTTCAGGAAGAAGCCAGCA
ACAAGGCAAAAATACAGCCTTTCAAGGGGCCTAGTCAAGCCTCTGTCAGAGATGAGGCGCCAGAT
CTCATTCAACAACAAAAAGCAAATGGGTCTGATCTCCCCCTACAA
Found at i:217994 original size:40 final size:40
Alignment explanation
Indices: 217939--218028 Score: 180
Period size: 40 Copynumber: 2.2 Consensus size: 40
217929 ACACTCGCAA
217939 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
1 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
217979 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
1 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
218019 GGGGCTTTGC
1 GGGGCTTTGC
218029 TCGTGACGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.14
Consensus pattern (40 bp):
GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
Left flanking sequence: Indices 217439 -- 217938
AGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCTCCAACCAAAGAAG
CGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGCGCTTTGCACAAAG
CACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACT
CTATCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAA
GCACTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGA
CGTTTCACTTTGCTCCCTTCTGTTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTT
GCTCCCGACCCTTCTCGTTTGGGCTTTGCACAATAACACTCGCAA
Right flanking sequence: Indices 218029 -- 218528
TCGTGACGTGACGTTGGCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGA
GGGGGAACAAGCGGGGTAGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTT
CGAATCCTGTCCCCGCCTAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTCGGT
TAGAATGATGGCCATGCTCCGAGTAAAGCCACTTTCAGGAAGAAGCCAGCAACAAGGCAAAAATA
CAGCCTTTCAAGGGGCCTAGTCAAGCCTCTGTCAGAGATGAGGCGCCAGATCTCATTCAACAACA
AAAAGCAAATGGGTCTGATCTCCCCCTACAAGACCGCTAACCAAACGGAAACGAGATACTCTCTG
ATCTACCGACTGCACCGAACTTCAAAAGGGAAGATTCTCTGATCTGACCTCCGAAAGCAAGAAGC
AAAACCGTCATGGGCGTGCCGTCATGCTGTTCAGGTTCGGCTAAA
Found at i:227791 original size:49 final size:51
Alignment explanation
Indices: 227735--227866 Score: 196
Period size: 54 Copynumber: 2.6 Consensus size: 51
227725 CGCGAGCACT
227735 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG-ATA-GAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTTTGA
*
227784 CTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTTTGA
**
227838 CTTGCGAGCGCTTGAACTTAATGCAAAGC
1 CTTGCGAGCGCTTTCACTTAATGCAAAGC
227867 CCAAATGAGC
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
49 34 0.45
50 3 0.04
54 38 0.51
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (51 bp):
CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTATATGAGTGCTTTGA
Left flanking sequence: Indices 227235 -- 227734
CGCTGAGAACTGAATAGTCTTCGTGTCCAAGAACAAAGCCCTAGCTTCGCCGTCAAACCTTTTGT
CTCTTTTAGTAGACTACACTTGACGGCCTACGAAGGGCTTCTACTGCTCGCCTTTGTTTGAAGCG
TGAATTCCGTACCAATACTAACTACAGCTACACCCAGGCCACTATAGAAGCTAGAAGTAGCCTAT
AGTAGAGTAGTCGGCCTAACCACAGCGTCACGATGGAAAGGTTACCTTTTTCATCTTCCGTAGGG
TCGCTTAAGTAGGGCGCCCGCCTACCAATCAAAGAGGCGGAGAGTCCGCGTAAGCTCACCCGGAA
GCTCGAAGAGCTTTCGGAGCCAGAGAGGAGAGAGTGGCGAAGGGGAGAAGCGACTCGTCGTAGAA
GCTTCCTAAAGCAAACGCTTCGCTACACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTT
GATACGAGCAAAGCTAAACGAGCAAAGTGAAACGTCGCGAGCACT
Right flanking sequence: Indices 227867 -- 228366
CCAAATGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAG
AGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCTTTGCCTAAAAGATCGACTTTGGTGTAGG
GCGGCTAGGCAGACGGAATGCAGGGTCAAAAAAGACTACGAAACCAAGAAGCAAAGCATTAGAAA
GCTCGACAAGTCGCTTATAGAAGTTGAATGCCGACTACCACTGTCAGGGGGGGGCTTAGCGAGCT
TTATAAGGCCGACCACTACATAAGCCTAGCGGTAATCGGCTTTCCAAGCTTCGAGCTTCCCTTCA
TTCGCTTCGCGGGAGCCGCACAGCACAACGCTGGAAGTCAGAGGGCCCGTACTACCTGCCACACC
CTTCGCTCTGAGGGACCGTAGAACGGAAAGCGCCTTCTGAACAACTCGGCAGAAGGGAAGGGGCC
TATGTATTTGCATGACCCTGCAGATTTGACCCTACACCCGGAGCC
Found at i:227936 original size:20 final size:20
Alignment explanation
Indices: 227885--227939 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 20
227875 GCAAAGCTCT
227885 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
227905 GTGTGC----GAGTGCTTTGA
1 CT-TGCGATAGAGTGCTTTGA
227922 CTTGCGATAGAGTGCTTT
1 CTTGCGATAGAGTGCTTT
227940 TCACGCTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
16 3 0.11
17 12 0.43
20 10 0.36
21 3 0.11
ACGTcount: A:0.16, C:0.15, G:0.33, T:0.36
Consensus pattern (20 bp):
CTTGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 227385 -- 227884
ACTACAGCTACACCCAGGCCACTATAGAAGCTAGAAGTAGCCTATAGTAGAGTAGTCGGCCTAAC
CACAGCGTCACGATGGAAAGGTTACCTTTTTCATCTTCCGTAGGGTCGCTTAAGTAGGGCGCCCG
CCTACCAATCAAAGAGGCGGAGAGTCCGCGTAAGCTCACCCGGAAGCTCGAAGAGCTTTCGGAGC
CAGAGAGGAGAGAGTGGCGAAGGGGAGAAGCGACTCGTCGTAGAAGCTTCCTAAAGCAAACGCTT
CGCTACACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATACGAGCAAAGCTAAACG
AGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGA
GTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAATGCAAAGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 227940 -- 228439
TCACGCTTTGCGAGTGCGTGCTTTGTGCTTTGCCTAAAAGATCGACTTTGGTGTAGGGCGGCTAG
GCAGACGGAATGCAGGGTCAAAAAAGACTACGAAACCAAGAAGCAAAGCATTAGAAAGCTCGACA
AGTCGCTTATAGAAGTTGAATGCCGACTACCACTGTCAGGGGGGGGCTTAGCGAGCTTTATAAGG
CCGACCACTACATAAGCCTAGCGGTAATCGGCTTTCCAAGCTTCGAGCTTCCCTTCATTCGCTTC
GCGGGAGCCGCACAGCACAACGCTGGAAGTCAGAGGGCCCGTACTACCTGCCACACCCTTCGCTC
TGAGGGACCGTAGAACGGAAAGCGCCTTCTGAACAACTCGGCAGAAGGGAAGGGGCCTATGTATT
TGCATGACCCTGCAGATTTGACCCTACACCCGGAGCCAATCCCCTAGTGGTCCTGCCACCACGCC
GCAGAACGGGAGCTCGTGTGGAACCTTGGATTTCTGGCGAGGTGG
Found at i:232523 original size:20 final size:20
Alignment explanation
Indices: 232500--232557 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
232490 TCGGGCTGAG
232500 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
* *
232520 GTCAAAGCACTC-TA-TC-A
1 GTCAAAGCACTCGCACGCAA
*
232537 CTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
232557 G
1 G
232558 AGAGCTTTGC
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
17 12 0.41
18 2 0.07
19 2 0.07
20 13 0.45
ACGTcount: A:0.34, C:0.34, G:0.17, T:0.14
Consensus pattern (20 bp):
GTCAAAGCACTCGCACGCAA
Left flanking sequence: Indices 232000 -- 232499
AGAGCCACTAAGAGCTGGCGGACCGGGCCGGGCGCAGGTGCCAGATCCGAAAAGTCGAGTCTCAC
CCCAACCACGTGGTACGACGGGCACTCCAAGACCTGGCGAATGATGGCCCACCCCACTCAAGAGC
GCTTATGTCATGTGGGAAGGAAGGCTGGAAACAATCCATCTTTATGGTTTGGATATATAGAACAT
GGTAGGAATAATAAGAATCAAAGTCCAGGTTGGTTGGTGAGCCTAGTGATAGGAGACTACCTAGC
TCGGTTCGGAGAGCACTTGTAGGGTGAAAGATTTGTTTGTTGCCTTATGTTACGGCCTAAATGCT
GAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGCATGCATAC
ATCCGTAAGTAACTTAGTGCAACATGGCAAATGGCATTTTTAGGAATCAGCAAAGAAAAGAAAAA
CGGGTCTTTCTGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAG
Right flanking sequence: Indices 232558 -- 233057
AGAGCTTTGCTCATTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATAT
ACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
TGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCT
CGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
TGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGAGTGCT
CGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGT
TGAGCTTTGCTCGCGACCCTTCTGTTGAGCTTTGCTCCCTTCTGT
Found at i:232638 original size:54 final size:54
Alignment explanation
Indices: 232575--232696 Score: 217
Period size: 54 Copynumber: 2.3 Consensus size: 54
232565 TGCTCATTTG
**
232575 GGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGA
1 GGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGA
232629 GGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGA
1 GGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGA
*
232683 TGCTTTGCATTAAG
1 GGCTTTGCATTAAG
232697 CGCTCGCAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (54 bp):
GGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGA
Left flanking sequence: Indices 232075 -- 232574
TGGTACGACGGGCACTCCAAGACCTGGCGAATGATGGCCCACCCCACTCAAGAGCGCTTATGTCA
TGTGGGAAGGAAGGCTGGAAACAATCCATCTTTATGGTTTGGATATATAGAACATGGTAGGAATA
ATAAGAATCAAAGTCCAGGTTGGTTGGTGAGCCTAGTGATAGGAGACTACCTAGCTCGGTTCGGA
GAGCACTTGTAGGGTGAAAGATTTGTTTGTTGCCTTATGTTACGGCCTAAATGCTGAACTATTGA
CCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGCATGCATACATCCGTAAGT
AACTTAGTGCAACATGGCAAATGGCATTTTTAGGAATCAGCAAAGAAAAGAAAAACGGGTCTTTC
TGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGTCAAAGCACTCGCACGCAAGTCAAAGCAC
TCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTTG
Right flanking sequence: Indices 232697 -- 233196
CGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCA
TTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
AAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCA
TTAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGAGTGCTCGCGACGTT
GAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTG
CTCGCGACCCTTCTGTTGAGCTTTGCTCCCTTCTGTTTAGCTTTGCTCCCTTCTGTTGAGCTTTG
CTCCCGACCCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTAGTGTCTTTTTGTTAGTTGTTAGT
ATAGCGGATTTCTCTTAGCCTAGTCCTTTCTTTCAAACAAAAACG
Found at i:232664 original size:16 final size:16
Alignment explanation
Indices: 232640--232673 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
232630 GCTTTGCATT
* *
232640 AAGTGAAAGCGCTCGC
1 AAGTCAAAGCACTCGC
232656 AAGTCAAAGCACTCGC
1 AAGTCAAAGCACTCGC
232672 AA
1 AA
232674 TATACGCGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.26, G:0.24, T:0.12
Consensus pattern (16 bp):
AAGTCAAAGCACTCGC
Left flanking sequence: Indices 232140 -- 232639
TGTGGGAAGGAAGGCTGGAAACAATCCATCTTTATGGTTTGGATATATAGAACATGGTAGGAATA
ATAAGAATCAAAGTCCAGGTTGGTTGGTGAGCCTAGTGATAGGAGACTACCTAGCTCGGTTCGGA
GAGCACTTGTAGGGTGAAAGATTTGTTTGTTGCCTTATGTTACGGCCTAAATGCTGAACTATTGA
CCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGCATGCATACATCCGTAAGT
AACTTAGTGCAACATGGCAAATGGCATTTTTAGGAATCAGCAAAGAAAAGAAAAACGGGTCTTTC
TGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGTCAAAGCACTCGCACGCAAGTCAAAGCAC
TCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTTGGGCTTTGCATTAAGTTCAAG
CGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCATT
Right flanking sequence: Indices 232674 -- 233173
TATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCAT
TAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCG
CTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGC
TTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTTCTGTTGAGCTTTGCTCCCTTCTGTTTAGCT
TTGCTCCCTTCTGTTGAGCTTTGCTCCCGACCCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTA
GTGTCTTTTTGTTAGTTGTTAGTATAGCGGATTTCTCTTAGCCTA
Found at i:232718 original size:35 final size:35
Alignment explanation
Indices: 232677--232941 Score: 278
Period size: 35 Copynumber: 6.9 Consensus size: 35
232667 CTCGCAATAT
232677 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
232712 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
232747 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGC----A-TT-AAGCGCTCGCAAGTCAGC
232788 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGC
1 ACGCGATGCTTTGC----A-TT-AAGCGCTCGCAAGT-----CA---GC
232837 AATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 -----ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
232877 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
* **
232912 ACGCGATGCTTTACACAAAGCGCTCGCAAG
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAG
232942 AGTGCTCGCG
Statistics
Matches: 208, Mismatches: 3, Indels: 38
0.84 0.01 0.15
Matches are distributed among these distances:
35 111 0.53
39 1 0.00
40 4 0.02
41 55 0.26
43 2 0.01
46 2 0.01
48 14 0.07
49 4 0.02
50 1 0.00
54 14 0.07
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (35 bp):
ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
Left flanking sequence: Indices 232177 -- 232676
TTTGGATATATAGAACATGGTAGGAATAATAAGAATCAAAGTCCAGGTTGGTTGGTGAGCCTAGT
GATAGGAGACTACCTAGCTCGGTTCGGAGAGCACTTGTAGGGTGAAAGATTTGTTTGTTGCCTTA
TGTTACGGCCTAAATGCTGAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTT
CCCGGACCGCATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATGGCATTTTTAGGAAT
CAGCAAAGAAAAGAAAAACGGGTCTTTCTGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGT
CAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTG
CTCATTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGC
TTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATAT
Right flanking sequence: Indices 232942 -- 233441
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCG
CGACGTTGAGCTTTGCTCGCGACCCTTCTGTTGAGCTTTGCTCCCTTCTGTTTAGCTTTGCTCCC
TTCTGTTGAGCTTTGCTCCCGACCCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTAGTGTCTTT
TTGTTAGTTGTTAGTATAGCGGATTTCTCTTAGCCTAGTCCTTTCTTTCAAACAAAAACGAATGG
ATACTTGAAATTACTCAAAAAGAGTTGTCATGATCATTTTCTTTGATATTTCTTATTATGTTTCT
GTAGATCATATGGTCTTTGCGATGGAGGATGAGTCGGTGGCTTCTGTCGCATCCAACTCCGCAAG
GGGGGAGAGCAGCCAGATAGAGGGGAGTAGTAGTGGGTGGACATCTTTCGACGAAGGCGTTATAG
CCGAGTACGAAAGGGGGGGAGAGGACGAAATCACCCCCCCCCCAA
Found at i:232818 original size:165 final size:165
Alignment explanation
Indices: 232623--232923 Score: 575
Period size: 165 Copynumber: 1.8 Consensus size: 165
232613 CTCGCAATAT
232623 ACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
1 ACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
232688 TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
66 TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
232753 TGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGC
131 TGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGC
* **
232788 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
1 ACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
232853 TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
66 TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
232918 TGCTTT
131 TGCTTT
232924 ACACAAAGCG
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
165 133 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (165 bp):
ACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTT
TGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGA
TGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGC
Left flanking sequence: Indices 232123 -- 232622
CAAGAGCGCTTATGTCATGTGGGAAGGAAGGCTGGAAACAATCCATCTTTATGGTTTGGATATAT
AGAACATGGTAGGAATAATAAGAATCAAAGTCCAGGTTGGTTGGTGAGCCTAGTGATAGGAGACT
ACCTAGCTCGGTTCGGAGAGCACTTGTAGGGTGAAAGATTTGTTTGTTGCCTTATGTTACGGCCT
AAATGCTGAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGCA
TGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATGGCATTTTTAGGAATCAGCAAAGAAA
AGAAAAACGGGTCTTTCTGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGTCAAAGCACTCG
CACGCAAGTCAAAGCACTCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTTGGGC
TTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATAT
Right flanking sequence: Indices 232924 -- 233423
ACACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGC
GACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTTCTGTTGAGCTTTGCTCCCTT
CTGTTTAGCTTTGCTCCCTTCTGTTGAGCTTTGCTCCCGACCCTTCTGTTTGGTCCGAACCTTTT
TTCTTTTTTAGTGTCTTTTTGTTAGTTGTTAGTATAGCGGATTTCTCTTAGCCTAGTCCTTTCTT
TCAAACAAAAACGAATGGATACTTGAAATTACTCAAAAAGAGTTGTCATGATCATTTTCTTTGAT
ATTTCTTATTATGTTTCTGTAGATCATATGGTCTTTGCGATGGAGGATGAGTCGGTGGCTTCTGT
CGCATCCAACTCCGCAAGGGGGGAGAGCAGCCAGATAGAGGGGAGTAGTAGTGGGTGGACATCTT
TCGACGAAGGCGTTATAGCCGAGTACGAAAGGGGGGGAGAGGACG
Found at i:232968 original size:19 final size:19
Alignment explanation
Indices: 232944--233029 Score: 172
Period size: 19 Copynumber: 4.5 Consensus size: 19
232934 CTCGCAAGAG
232944 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
232963 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
232982 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
233001 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
233020 TGCTCGCGAC
1 TGCTCGCGAC
233030 CCTTCTGTTG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.10, C:0.28, G:0.31, T:0.30
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 232444 -- 232943
GAAAAGAAAAACGGGTCTTTCTGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGTCAAAGCA
CTCGCACGCAAGTCAAAGCACTCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTT
GGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCAT
TAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTT
CAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACT
CGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCG
CTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 233030 -- 233529
CCTTCTGTTGAGCTTTGCTCCCTTCTGTTTAGCTTTGCTCCCTTCTGTTGAGCTTTGCTCCCGAC
CCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTAGTGTCTTTTTGTTAGTTGTTAGTATAGCGGA
TTTCTCTTAGCCTAGTCCTTTCTTTCAAACAAAAACGAATGGATACTTGAAATTACTCAAAAAGA
GTTGTCATGATCATTTTCTTTGATATTTCTTATTATGTTTCTGTAGATCATATGGTCTTTGCGAT
GGAGGATGAGTCGGTGGCTTCTGTCGCATCCAACTCCGCAAGGGGGGAGAGCAGCCAGATAGAGG
GGAGTAGTAGTGGGTGGACATCTTTCGACGAAGGCGTTATAGCCGAGTACGAAAGGGGGGGAGAG
GACGAAATCACCCCCCCCCCAAACATCCACGAAACCCCCGCAGGGCTCACGGAGGACGAGGAAAG
ACGCCTGACGGCATCGAAGGAGTATAAGCGTGTAGATAGACATTT
Found at i:233045 original size:25 final size:20
Alignment explanation
Indices: 233029--233091 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
233019 TTGCTCGCGA
233029 CCCTTCTGTTGAGCTTTGCT
1 CCCTTCTGTTGAGCTTTGCT
*
233049 CCCTTCTGTTTAGCTTTGCT
1 CCCTTCTGTTGAGCTTTGCT
233069 CCCTTCTGTTGAGCTTTGCT
1 CCCTTCTGTTGAGCTTTGCT
233089 CCC
1 CCC
233092 GACCCTTCTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.05, C:0.33, G:0.17, T:0.44
Consensus pattern (20 bp):
CCCTTCTGTTGAGCTTTGCT
Left flanking sequence: Indices 232529 -- 233028
CTCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTTGGGCTTTGCATTAAGTTCAA
GCGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCATTAAGTGAAAGCGCTCGCAAG
TCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTT
GCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCA
CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTT
GCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGAT
GCTTTACACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTG
CTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGA
Right flanking sequence: Indices 233092 -- 233591
GACCCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTAGTGTCTTTTTGTTAGTTGTTAGTATAGC
GGATTTCTCTTAGCCTAGTCCTTTCTTTCAAACAAAAACGAATGGATACTTGAAATTACTCAAAA
AGAGTTGTCATGATCATTTTCTTTGATATTTCTTATTATGTTTCTGTAGATCATATGGTCTTTGC
GATGGAGGATGAGTCGGTGGCTTCTGTCGCATCCAACTCCGCAAGGGGGGAGAGCAGCCAGATAG
AGGGGAGTAGTAGTGGGTGGACATCTTTCGACGAAGGCGTTATAGCCGAGTACGAAAGGGGGGGA
GAGGACGAAATCACCCCCCCCCCAAACATCCACGAAACCCCCGCAGGGCTCACGGAGGACGAGGA
AAGACGCCTGACGGCATCGAAGGAGTATAAGCGTGTAGATAGACATTTCACAAGGTGTGAACAGC
AGGTGGAACTGATCGTCAACAAGGCCCGCGACGTCCTTGAGCGTC
Found at i:233103 original size:25 final size:20
Alignment explanation
Indices: 232954--233091 Score: 120
Period size: 19 Copynumber: 6.8 Consensus size: 20
232944 TGCTCGCGAC
* **
232954 GTTGAGCTTTGCTCGCGAC-
1 GTTGAGCTTTGCTCCCTTCT
* **
232973 GTTGAGCTTTGCTCGCGAC-
1 GTTGAGCTTTGCTCCCTTCT
* **
232992 GTTGAGCTTTGCTCGCGAC-
1 GTTGAGCTTTGCTCCCTTCT
233011 GTTGAGCTTTGCTCGCGACCCTTCT
1 GTTGAGCTTTGCT-----CCCTTCT
233036 GTTGAGCTTTGCTCCCTTCT
1 GTTGAGCTTTGCTCCCTTCT
*
233056 GTTTAGCTTTGCTCCCTTCT
1 GTTGAGCTTTGCTCCCTTCT
233076 GTTGAGCTTTGCTCCC
1 GTTGAGCTTTGCTCCC
233092 GACCCTTCTG
Statistics
Matches: 108, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
19 51 0.47
20 41 0.38
24 3 0.03
25 13 0.12
ACGTcount: A:0.08, C:0.29, G:0.25, T:0.38
Consensus pattern (20 bp):
GTTGAGCTTTGCTCCCTTCT
Left flanking sequence: Indices 232454 -- 232953
ACGGGTCTTTCTGTCTGTGTATTTTAAAGATTGTCCTCGGGCTGAGGTCAAAGCACTCGCACGCA
AGTCAAAGCACTCTATCACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCATTTGGGCTTTGCA
TTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGAGGCTTTGCATTAAGTGAAAG
CGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCAC
GCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCG
CAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATAC
GCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTC
AGCACGCGATGCTTTACACAAAGCGCTCGCAAGAGTGCTCGCGAC
Right flanking sequence: Indices 233092 -- 233591
GACCCTTCTGTTTGGTCCGAACCTTTTTTCTTTTTTAGTGTCTTTTTGTTAGTTGTTAGTATAGC
GGATTTCTCTTAGCCTAGTCCTTTCTTTCAAACAAAAACGAATGGATACTTGAAATTACTCAAAA
AGAGTTGTCATGATCATTTTCTTTGATATTTCTTATTATGTTTCTGTAGATCATATGGTCTTTGC
GATGGAGGATGAGTCGGTGGCTTCTGTCGCATCCAACTCCGCAAGGGGGGAGAGCAGCCAGATAG
AGGGGAGTAGTAGTGGGTGGACATCTTTCGACGAAGGCGTTATAGCCGAGTACGAAAGGGGGGGA
GAGGACGAAATCACCCCCCCCCCAAACATCCACGAAACCCCCGCAGGGCTCACGGAGGACGAGGA
AAGACGCCTGACGGCATCGAAGGAGTATAAGCGTGTAGATAGACATTTCACAAGGTGTGAACAGC
AGGTGGAACTGATCGTCAACAAGGCCCGCGACGTCCTTGAGCGTC
Found at i:235952 original size:19 final size:19
Alignment explanation
Indices: 235928--236013 Score: 172
Period size: 19 Copynumber: 4.5 Consensus size: 19
235918 GGGAGGGAGG
235928 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
235947 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
235966 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
235985 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
236004 GTCGCGAGCA
1 GTCGCGAGCA
236014 CTCTTGCGAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.30, C:0.31, G:0.28, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 235428 -- 235927
CTAATGTTGGTCATTATCACGATTTGGAAAGTTGTTGTGTGATCGTGTACTTTTCGTCGAGCAGC
CCTATCGAACAACCAGGCTAGGTGGGCCGGGCATGAGCGAGGGACCGGAAAGAAAGCATTACACA
GCCACAGAGAGGGGGGGCTCCGCGGGGTGGTCATGTCGGACGAGACAAAACGGTCGAGCTGATGA
CCACTGGCCAGGGATGAGATCAGATGTTGAGAAGTTCGTGATAGGGTGCAGGACTTGTCGGTTGG
CTAAGGGACAGATGCAGAACAAGAAGCAGAGAAGAAAGAGGACGAGACGCACGTTTTTTAATCGA
TCACTGAAAGGACGTACAACTTTCTCTTTCGTAAGGAAGAAGAAGATTAGCGAGCGTATGGAAAG
GACGAGTCACCACTGGGCATCCGAGTTGACTGCCTTAGCCATGTGTGACTGGTGGATCTCCAGTT
TTTGCTGTGCTTTTAGCCAGTTATTCGGAAGGGTCGGGAGGGAGG
Right flanking sequence: Indices 236014 -- 236513
CTCTTGCGAGCGCTTTGTGTAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGC
GTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGC
ATCGCGTATATTGCGAGTGCTTTGTCCTTTATCAAAAAGAATTATGACAGCCCCGGTATAGATGA
CATTGGATTCATTCATTCCTATATCTTTGAATCGGTCTCAAGTCTGAGTCCTTGCTTTCAATAGT
TCCTCTCCTCAGGCCCTGGCCTAGTAGCTCGGGTCGGGCATGCCCTTGATTCTCTTCTTTTCTCG
TCCACGAAGCCGGGTCCTTGAAAGACAGATTTCCTCCCCCCCGTGACGCTCCCAAACCGATCGCT
ATCGTTTTCTTGCTTTCTAGTTGTCTTTCATTTTGATAGAACGGCTTTATATCAGTATAGTTGGT
AGGATGAAGTGGGATGAAGCCTGACCTTAACCTTACTTAATAAGG
Found at i:236055 original size:35 final size:35
Alignment explanation
Indices: 236016--236150 Score: 227
Period size: 35 Copynumber: 3.9 Consensus size: 35
236006 CGCGAGCACT
** *
236016 CTTGCGAGCGCTTTGTGTAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGA
236051 CTTGCGAGCGCTTAATGTC-AAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTAATG-CAAAGCATCGCGTGCTGA
236086 CTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGA
236121 CTTGCGAGCGCTTAATGCAAAGCATCGCGT
1 CTTGCGAGCGCTTAATGCAAAGCATCGCGT
236151 ATATTGCGAG
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
34 1 0.01
35 94 0.99
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (35 bp):
CTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 235516 -- 236015
GGGCCGGGCATGAGCGAGGGACCGGAAAGAAAGCATTACACAGCCACAGAGAGGGGGGGCTCCGC
GGGGTGGTCATGTCGGACGAGACAAAACGGTCGAGCTGATGACCACTGGCCAGGGATGAGATCAG
ATGTTGAGAAGTTCGTGATAGGGTGCAGGACTTGTCGGTTGGCTAAGGGACAGATGCAGAACAAG
AAGCAGAGAAGAAAGAGGACGAGACGCACGTTTTTTAATCGATCACTGAAAGGACGTACAACTTT
CTCTTTCGTAAGGAAGAAGAAGATTAGCGAGCGTATGGAAAGGACGAGTCACCACTGGGCATCCG
AGTTGACTGCCTTAGCCATGTGTGACTGGTGGATCTCCAGTTTTTGCTGTGCTTTTAGCCAGTTA
TTCGGAAGGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGC
GAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACT
Right flanking sequence: Indices 236151 -- 236650
ATATTGCGAGTGCTTTGTCCTTTATCAAAAAGAATTATGACAGCCCCGGTATAGATGACATTGGA
TTCATTCATTCCTATATCTTTGAATCGGTCTCAAGTCTGAGTCCTTGCTTTCAATAGTTCCTCTC
CTCAGGCCCTGGCCTAGTAGCTCGGGTCGGGCATGCCCTTGATTCTCTTCTTTTCTCGTCCACGA
AGCCGGGTCCTTGAAAGACAGATTTCCTCCCCCCCGTGACGCTCCCAAACCGATCGCTATCGTTT
TCTTGCTTTCTAGTTGTCTTTCATTTTGATAGAACGGCTTTATATCAGTATAGTTGGTAGGATGA
AGTGGGATGAAGCCTGACCTTAACCTTACTTAATAAGGTATATAGACATTACTAAGGCGTAAGGG
AAGCTGTAGGAGTAGCACTAGGAATAGTCGCCAATTAGACTGAATTAGTCTGAGTGCTGTAGTAG
GATGACCTTCGTAACCTTCCCTTTTTCCCTTAACTGCTGACAGCA
Found at i:245872 original size:21 final size:21
Alignment explanation
Indices: 245832--246000 Score: 209
Period size: 21 Copynumber: 7.7 Consensus size: 21
245822 TTTAGTTAGC
245832 CTTGCGGGTGCAAA-GTCGGG
1 CTTGCGGGTGCAAACGTCGGG
245852 CTTGCGGGTGCAAACGTCGGGTCGGG
1 CTTGCGGGTGCAAA---C--GTCGGG
245878 CTTGCGGGTGCAAACGTCGGG
1 CTTGCGGGTGCAAACGTCGGG
245899 CTTGCGGGTGCAAA-GTCGGG
1 CTTGCGGGTGCAAACGTCGGG
245919 CTTGCGGGTGCAAACGTCGGGTCGGG
1 CTTGCGGGTGCAAA---C--GTCGGG
245945 CTTGCGGGTGCAAACGTCGGG
1 CTTGCGGGTGCAAACGTCGGG
*
245966 CTTGCGGGTGCAGA-GTGCGGG
1 CTTGCGGGTGCAAACGT-CGGG
245987 CTTGCGGGTGCAAA
1 CTTGCGGGTGCAAA
246001 ACACACGCGA
Statistics
Matches: 134, Mismatches: 2, Indels: 25
0.83 0.01 0.16
Matches are distributed among these distances:
20 36 0.27
21 56 0.42
23 2 0.01
26 40 0.30
ACGTcount: A:0.14, C:0.22, G:0.45, T:0.20
Consensus pattern (21 bp):
CTTGCGGGTGCAAACGTCGGG
Left flanking sequence: Indices 245332 -- 245831
GCCCGCACTCCTCCGCTCCACAAAAACAAGCAAGGACGGGGTCGAGGTTAACATCATAAAGAGGG
CACAACTATACGTGCAGCAAAGCCAATACTTTTCTTCTTTTCCAGAAGCTGAAGATGATGATAAA
GTTATGTTGCGTGTAAAAGACCCCTCATCCCCGCCGGGGCAGGATAGCCAACACGCAGAAGCATC
GAATTCGAATGCTGATTTTTTGTGTTCCGAAAGAATCGTGTTCCCCTTTCATAAATATGAATTTA
CGCCTACGGAGAATGAGGAACTCCATTTGGGACCCTCCGGCCGCGATGGCGGCGCCCTCAGATAC
TGGTCCATTGATGATTGAGTTCACTAGTCACTAGTTATGATATGTCATAGATAATATATCATATC
ATATCGGATGCCCAGTGGTGACTCGTCCTTTCCATACGCTCGCTAATCTTCTTCTTCCTTACGAA
AGATGTTAGTCGATCATAGTAATTTGTTAGTCGATTTTAGTTAGC
Right flanking sequence: Indices 246001 -- 246500
ACACACGCGAGTCACTACCCTTTAGGGAAGGATTTTGGCCTTCTTGGGGCACCCGAAAGCGCGAA
AAACCCCTATAGACTAGAGTTAGGGTTTTTCGCAGGGCTCCAGTGGTTAGTTGGATTACCCATTG
CTCCAACCTGCTGACTGCTTCGCGAGCGTTCAGCCCTCCTCCTATCGTCGGGTCCCTCGGTCTTC
ACTTGCAGGCCTCGTTCGTCGCCCTCCTAGCGCCGGGCCCCATGCTCCTCACTTCGGGGGGGCGC
CCTCCTCCACGTCGGGCTTAGGCGCCCCGGGCAACAACAACCAACTGCAAAAGAAAGAACCAAGC
CGAGATAGAGATAGAAAGAAGCGCACTTAGAGCTTTAGTTCAAGTGCTTCACTGGCATTCGTGCT
ATCTGCTATCGCAAGTAGAACGAGGAGGAGGTTGATTTGCCTCCTTCACCCCACTCCGGGGCCTT
TTCATGCACAAGGCCCCTCCGTCGATCGGTCATCCCGCTCCCCGA
Found at i:245882 original size:26 final size:26
Alignment explanation
Indices: 245846--245965 Score: 163
Period size: 26 Copynumber: 5.0 Consensus size: 26
245836 CGGGTGCAAA
245846 GTCGGGCTTGCGGGTGCAAACGTCGG
1 GTCGGGCTTGCGGGTGCAAACGTCGG
245872 GTCGGGCTTGCGGGTGCAAA---C--
1 GTCGGGCTTGCGGGTGCAAACGTCGG
245893 GTCGGGCTTGCGGGTGCAAA------
1 GTCGGGCTTGCGGGTGCAAACGTCGG
245913 GTCGGGCTTGCGGGTGCAAACGTCGG
1 GTCGGGCTTGCGGGTGCAAACGTCGG
245939 GTCGGGCTTGCGGGTGCAAACGTCGG
1 GTCGGGCTTGCGGGTGCAAACGTCGG
245965 G
1 G
245966 CTTGCGGGTG
Statistics
Matches: 88, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
20 20 0.23
21 20 0.23
23 1 0.01
26 47 0.53
ACGTcount: A:0.12, C:0.23, G:0.46, T:0.19
Consensus pattern (26 bp):
GTCGGGCTTGCGGGTGCAAACGTCGG
Left flanking sequence: Indices 245346 -- 245845
GCTCCACAAAAACAAGCAAGGACGGGGTCGAGGTTAACATCATAAAGAGGGCACAACTATACGTG
CAGCAAAGCCAATACTTTTCTTCTTTTCCAGAAGCTGAAGATGATGATAAAGTTATGTTGCGTGT
AAAAGACCCCTCATCCCCGCCGGGGCAGGATAGCCAACACGCAGAAGCATCGAATTCGAATGCTG
ATTTTTTGTGTTCCGAAAGAATCGTGTTCCCCTTTCATAAATATGAATTTACGCCTACGGAGAAT
GAGGAACTCCATTTGGGACCCTCCGGCCGCGATGGCGGCGCCCTCAGATACTGGTCCATTGATGA
TTGAGTTCACTAGTCACTAGTTATGATATGTCATAGATAATATATCATATCATATCGGATGCCCA
GTGGTGACTCGTCCTTTCCATACGCTCGCTAATCTTCTTCTTCCTTACGAAAGATGTTAGTCGAT
CATAGTAATTTGTTAGTCGATTTTAGTTAGCCTTGCGGGTGCAAA
Right flanking sequence: Indices 245966 -- 246465
CTTGCGGGTGCAGAGTGCGGGCTTGCGGGTGCAAAACACACGCGAGTCACTACCCTTTAGGGAAG
GATTTTGGCCTTCTTGGGGCACCCGAAAGCGCGAAAAACCCCTATAGACTAGAGTTAGGGTTTTT
CGCAGGGCTCCAGTGGTTAGTTGGATTACCCATTGCTCCAACCTGCTGACTGCTTCGCGAGCGTT
CAGCCCTCCTCCTATCGTCGGGTCCCTCGGTCTTCACTTGCAGGCCTCGTTCGTCGCCCTCCTAG
CGCCGGGCCCCATGCTCCTCACTTCGGGGGGGCGCCCTCCTCCACGTCGGGCTTAGGCGCCCCGG
GCAACAACAACCAACTGCAAAAGAAAGAACCAAGCCGAGATAGAGATAGAAAGAAGCGCACTTAG
AGCTTTAGTTCAAGTGCTTCACTGGCATTCGTGCTATCTGCTATCGCAAGTAGAACGAGGAGGAG
GTTGATTTGCCTCCTTCACCCCACTCCGGGGCCTTTTCATGCACA
Found at i:245940 original size:67 final size:67
Alignment explanation
Indices: 245832--246000 Score: 320
Period size: 67 Copynumber: 2.5 Consensus size: 67
245822 TTTAGTTAGC
245832 CTTGCGGGTGCAAAGTCGGGCTTGCGGGTGCAAACGTCGGGTCGGGCTTGCGGGTGCAAACGTCG
1 CTTGCGGGTGCAAAGTCGGGCTTGCGGGTGCAAACGTCGGGTCGGGCTTGCGGGTGCAAACGTCG
245897 GG
66 GG
245899 CTTGCGGGTGCAAAGTCGGGCTTGCGGGTGCAAACGTCGGGTCGGGCTTGCGGGTGCAAACGTCG
1 CTTGCGGGTGCAAAGTCGGGCTTGCGGGTGCAAACGTCGGGTCGGGCTTGCGGGTGCAAACGTCG
245964 GG
66 GG
*
245966 CTTGCGGGTGCAGAGTGCGGGCTTGCGGGTGCAAA
1 CTTGCGGGTGCAAAGT-CGGGCTTGCGGGTGCAAA
246001 ACACACGCGA
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
67 82 0.82
68 18 0.18
ACGTcount: A:0.14, C:0.22, G:0.45, T:0.20
Consensus pattern (67 bp):
CTTGCGGGTGCAAAGTCGGGCTTGCGGGTGCAAACGTCGGGTCGGGCTTGCGGGTGCAAACGTCG
GG
Left flanking sequence: Indices 245332 -- 245831
GCCCGCACTCCTCCGCTCCACAAAAACAAGCAAGGACGGGGTCGAGGTTAACATCATAAAGAGGG
CACAACTATACGTGCAGCAAAGCCAATACTTTTCTTCTTTTCCAGAAGCTGAAGATGATGATAAA
GTTATGTTGCGTGTAAAAGACCCCTCATCCCCGCCGGGGCAGGATAGCCAACACGCAGAAGCATC
GAATTCGAATGCTGATTTTTTGTGTTCCGAAAGAATCGTGTTCCCCTTTCATAAATATGAATTTA
CGCCTACGGAGAATGAGGAACTCCATTTGGGACCCTCCGGCCGCGATGGCGGCGCCCTCAGATAC
TGGTCCATTGATGATTGAGTTCACTAGTCACTAGTTATGATATGTCATAGATAATATATCATATC
ATATCGGATGCCCAGTGGTGACTCGTCCTTTCCATACGCTCGCTAATCTTCTTCTTCCTTACGAA
AGATGTTAGTCGATCATAGTAATTTGTTAGTCGATTTTAGTTAGC
Right flanking sequence: Indices 246001 -- 246500
ACACACGCGAGTCACTACCCTTTAGGGAAGGATTTTGGCCTTCTTGGGGCACCCGAAAGCGCGAA
AAACCCCTATAGACTAGAGTTAGGGTTTTTCGCAGGGCTCCAGTGGTTAGTTGGATTACCCATTG
CTCCAACCTGCTGACTGCTTCGCGAGCGTTCAGCCCTCCTCCTATCGTCGGGTCCCTCGGTCTTC
ACTTGCAGGCCTCGTTCGTCGCCCTCCTAGCGCCGGGCCCCATGCTCCTCACTTCGGGGGGGCGC
CCTCCTCCACGTCGGGCTTAGGCGCCCCGGGCAACAACAACCAACTGCAAAAGAAAGAACCAAGC
CGAGATAGAGATAGAAAGAAGCGCACTTAGAGCTTTAGTTCAAGTGCTTCACTGGCATTCGTGCT
ATCTGCTATCGCAAGTAGAACGAGGAGGAGGTTGATTTGCCTCCTTCACCCCACTCCGGGGCCTT
TTCATGCACAAGGCCCCTCCGTCGATCGGTCATCCCGCTCCCCGA
Found at i:247831 original size:19 final size:19
Alignment explanation
Indices: 247807--247854 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
247797 GGTCGGGAGG
247807 GTCGCGAGCAAAG-TGAAAC
1 GTCGCGAGCAAAGCT-AAAC
*
247826 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTAAAC
247845 GTCGCGAGCA
1 GTCGCGAGCA
247855 CTCTTGCGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.31, C:0.27, G:0.31, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTAAAC
Left flanking sequence: Indices 247307 -- 247806
ATGTCAACTGCTTTACCCAAGGCCCATCAAGACAAAGCAGCTCTTCCTATATGGCAAACCCAGCA
CCCAAAAAACCCTTATCCATGTCACGGTGGAATCGGAAAGATGGAACCGGGGCCCGCCCGGCCAC
CGCCGGGGGGACAACCAGACCAACCAAACCTGTAGGGTCCGTCAGCCTGAATCATGGCCAATGAA
AGAAAAAAAGGAGGGTTGGTCGGGCGAATTCATTCTGGGAGGAACGAAGTCACCTGAGCTACGCG
AAGGGAAGGAAGTCGTGGGCGGAGCCGGAGGTCACTTTTCCCGATCCATCCCGAGGTTCCCTCTC
TCGCCCATCATCGTACCCAGCCCTGCTATCGGCTCAGCCCTATCTCTTTCTCTATTTTTTCCAAA
AGGATATCTGGTTCCCTTTTTCATAGCAATTGTTTTTAAAGAAAGAGTTTGTCCAACTTGATGGA
AGGGTCGGGAGGGAGGGAGCAAAGCTAAACAGAAGGGTCGGGAGG
Right flanking sequence: Indices 247855 -- 248354
CTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGTGCGAGTGCTTTGACTT
AGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCG
ATAGAGTGTAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTT
GATCTAATCTTTCTATTTCTCAATAGCAAGACAAGAAGTTCGAAAGTCTCAATCAATAGCAGTCA
ATAGCGATGCTTTCTTATAGCTTGACGTAGCAGCGCGCTACTACTATATGTATGGTGGTGAAAAC
TCAATCTTCTCTTTCTATCTCTTTCCTAATAGTTAGGTCCTTAAAGGACGTAACCAACGGAGAGT
TCTCCCCCTCCGACATTGTTCTCCGACGATGTCCCCTGGGCGAAACGAAAGGGGCCACCTTTCTC
TTTCTCGCCGAAAGCGCCTCCATCGTGGAGATCAGGACAAGTGGG
Found at i:248022 original size:20 final size:20
Alignment explanation
Indices: 247997--248051 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
247987 AGAGTGTAGT
247997 GATAGAGTGCTTTGACTTGC
1 GATAGAGTGCTTTGACTTGC
248017 GATAGAGTGCTTTGACTTGC
1 GATAGAGTGCTTTGACTTGC
*
248037 G-TGCGAGTGCTTTGA
1 GAT-AGAGTGCTTTGA
248052 TCTAATCTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.18, C:0.15, G:0.33, T:0.35
Consensus pattern (20 bp):
GATAGAGTGCTTTGACTTGC
Left flanking sequence: Indices 247497 -- 247996
ATGAAAGAAAAAAAGGAGGGTTGGTCGGGCGAATTCATTCTGGGAGGAACGAAGTCACCTGAGCT
ACGCGAAGGGAAGGAAGTCGTGGGCGGAGCCGGAGGTCACTTTTCCCGATCCATCCCGAGGTTCC
CTCTCTCGCCCATCATCGTACCCAGCCCTGCTATCGGCTCAGCCCTATCTCTTTCTCTATTTTTT
CCAAAAGGATATCTGGTTCCCTTTTTCATAGCAATTGTTTTTAAAGAAAGAGTTTGTCCAACTTG
ATGGAAGGGTCGGGAGGGAGGGAGCAAAGCTAAACAGAAGGGTCGGGAGGGTCGCGAGCAAAGTG
AAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCA
TCGCGTGCTTTTAGTGTGCGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCCCAAACGA
GCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGATAGAGTGTAGT
Right flanking sequence: Indices 248052 -- 248551
TCTAATCTTTCTATTTCTCAATAGCAAGACAAGAAGTTCGAAAGTCTCAATCAATAGCAGTCAAT
AGCGATGCTTTCTTATAGCTTGACGTAGCAGCGCGCTACTACTATATGTATGGTGGTGAAAACTC
AATCTTCTCTTTCTATCTCTTTCCTAATAGTTAGGTCCTTAAAGGACGTAACCAACGGAGAGTTC
TCCCCCTCCGACATTGTTCTCCGACGATGTCCCCTGGGCGAAACGAAAGGGGCCACCTTTCTCTT
TCTCGCCGAAAGCGCCTCCATCGTGGAGATCAGGACAAGTGGGTTGGTTCGTTTCGTCCTCCTAT
CTACGAAATTCTCTGTGTTCGTTCGTGATCATGTTGGGCCAAAGGGTGAAAGGGGCGGATGTGAA
ACGGCGATTCCCCCTTTTCCTTTTCAGTAGGGTCCCCTATGGATAGTCAATAAATACAATATCTA
TAGTTAGCCTTAACTAGTTCAGTTTGGTATGACCTCTTTCTCTTT
Found at i:250465 original size:17 final size:17
Alignment explanation
Indices: 250443--250522 Score: 90
Period size: 17 Copynumber: 4.5 Consensus size: 17
250433 GAAAGCGTGA
250443 AAAGCACTCTATCACTC
1 AAAGCACTCTATCACTC
*
250460 AAAGCACTCTATCGCAAGTC
1 AAAGCACTCTAT--C-ACTC
*
250480 AAAGCACTCGCA-CACTC
1 AAAGCACTC-TATCACTC
*
250497 AAAGCACTCTATCGCTC
1 AAAGCACTCTATCACTC
250514 AAAGCACTC
1 AAAGCACTC
250523 GCAATATCAC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.02
17 37 0.70
18 1 0.02
19 1 0.02
20 12 0.23
21 1 0.02
ACGTcount: A:0.35, C:0.35, G:0.11, T:0.19
Consensus pattern (17 bp):
AAAGCACTCTATCACTC
Left flanking sequence: Indices 249943 -- 250442
GATGGAGCTCGCTCCGTCTCTTCGATCGCTCGGCTGGCTGGAAAAGGGGGTCCCTTCCTCTCTCC
CTGCAAGCAAGACGAGAACCACTTCTCCGTTCCATTCATTCTTCCTGAGATGTGCCTGCCCTTTC
ACGAACCTCCGACGGCCATGCATGCGTTCTTTCTCTCCCCCCCCCCCTCCGCCATACATCTCTTT
TGTTCGCCCCCGTGCTTTTGTTTGTGGCCTGTGCGTTTTCTTTTTGTTAGGCATGGCACCCCACC
TACGGTGCGGAGTGGTGTCCTCCCCTCCCGAAGACCTTAACCAACGTTCCGTCTATGGAGCAACT
TCCACCAACGTTGCAGTAAGCAGTAAGCTGGCCCAGTCTCTCGCCCAGCTTCGCCTTCTTCCGTG
GCCAAGTGGAAGCGTTCAACGGCAGCCTACAACCTTTCCGCGTTCCACAAGGTGGAGCTTGTTCA
ATGGAATGGAAGCCTAATGCGACCCTTGAAAAAGAGAAAGCGTGA
Right flanking sequence: Indices 250523 -- 251022
GCAATATCACGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCG
CTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCA
CTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTT
TAGCTTTGCTCGCGACGTTTCACTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAA
GTTGGACTACCGGCAAAAGGTTTTGATCGATCGATTGATTGGATGTAGAAGGGGTTGATGGAAGT
GTGAGATCAGACAGACCGAGCACTGCTGCAGGATTGGACGTCTATCTATCTCACCACGTCAATGA
CGGCGGAAGGAATGCCCTTCTTTCTGACGGCTCGTTACCGCAGCGCTCGTTCACACCAATCCAAC
CAGTATCAAACTCCGCTCTGGCATTATGGAACGAAAGAGATGCCG
Found at i:250521 original size:34 final size:35
Alignment explanation
Indices: 250455--250525 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 35
250445 AGCACTCTAT
250455 CACTCAAAGCACTCTATCGCAAGTCAAAGCACTCGCA
1 CACTCAAAGCACTCTATCGC-A-TCAAAGCACTCGCA
250492 CACTCAAAGCACTCTATCGC-TCAAAGCACTCGCA
1 CACTCAAAGCACTCTATCGCATCAAAGCACTCGCA
250526 ATATCACGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
34 14 0.41
37 20 0.59
ACGTcount: A:0.34, C:0.37, G:0.13, T:0.17
Consensus pattern (35 bp):
CACTCAAAGCACTCTATCGCATCAAAGCACTCGCA
Left flanking sequence: Indices 249955 -- 250454
TCCGTCTCTTCGATCGCTCGGCTGGCTGGAAAAGGGGGTCCCTTCCTCTCTCCCTGCAAGCAAGA
CGAGAACCACTTCTCCGTTCCATTCATTCTTCCTGAGATGTGCCTGCCCTTTCACGAACCTCCGA
CGGCCATGCATGCGTTCTTTCTCTCCCCCCCCCCCTCCGCCATACATCTCTTTTGTTCGCCCCCG
TGCTTTTGTTTGTGGCCTGTGCGTTTTCTTTTTGTTAGGCATGGCACCCCACCTACGGTGCGGAG
TGGTGTCCTCCCCTCCCGAAGACCTTAACCAACGTTCCGTCTATGGAGCAACTTCCACCAACGTT
GCAGTAAGCAGTAAGCTGGCCCAGTCTCTCGCCCAGCTTCGCCTTCTTCCGTGGCCAAGTGGAAG
CGTTCAACGGCAGCCTACAACCTTTCCGCGTTCCACAAGGTGGAGCTTGTTCAATGGAATGGAAG
CCTAATGCGACCCTTGAAAAAGAGAAAGCGTGAAAAGCACTCTAT
Right flanking sequence: Indices 250526 -- 251025
ATATCACGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTC
GCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTC
TATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTTTAG
CTTTGCTCGCGACGTTTCACTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTT
GGACTACCGGCAAAAGGTTTTGATCGATCGATTGATTGGATGTAGAAGGGGTTGATGGAAGTGTG
AGATCAGACAGACCGAGCACTGCTGCAGGATTGGACGTCTATCTATCTCACCACGTCAATGACGG
CGGAAGGAATGCCCTTCTTTCTGACGGCTCGTTACCGCAGCGCTCGTTCACACCAATCCAACCAG
TATCAAACTCCGCTCTGGCATTATGGAACGAAAGAGATGCCGGGT
Found at i:250640 original size:49 final size:49
Alignment explanation
Indices: 250582--250693 Score: 181
Period size: 49 Copynumber: 2.3 Consensus size: 49
250572 GGCTTTGCAC
*
250582 AAAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCATTAAGTT
1 AAAGCGCTCGCAAGTCAAAGCACTC-CATCGCGATGCTTTGCATTAAGTG
* *
250631 CAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTG
1 AAAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCATTAAGTG
250680 AAAGCGCTCGCAAG
1 AAAGCGCTCGCAAG
250694 AGTGCTCGCG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
48 1 0.02
49 57 0.98
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (49 bp):
AAAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCATTAAGTG
Left flanking sequence: Indices 250082 -- 250581
CGACGGCCATGCATGCGTTCTTTCTCTCCCCCCCCCCCTCCGCCATACATCTCTTTTGTTCGCCC
CCGTGCTTTTGTTTGTGGCCTGTGCGTTTTCTTTTTGTTAGGCATGGCACCCCACCTACGGTGCG
GAGTGGTGTCCTCCCCTCCCGAAGACCTTAACCAACGTTCCGTCTATGGAGCAACTTCCACCAAC
GTTGCAGTAAGCAGTAAGCTGGCCCAGTCTCTCGCCCAGCTTCGCCTTCTTCCGTGGCCAAGTGG
AAGCGTTCAACGGCAGCCTACAACCTTTCCGCGTTCCACAAGGTGGAGCTTGTTCAATGGAATGG
AAGCCTAATGCGACCCTTGAAAAAGAGAAAGCGTGAAAAGCACTCTATCACTCAAAGCACTCTAT
CGCAAGTCAAAGCACTCGCACACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATATCACGCTC
AAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCAC
Right flanking sequence: Indices 250694 -- 251193
AGTGCTCGCGACGCTTTGCTCGTTTAGCTTTGCTCGCGACGTTTCACTTTGCTCGCGACGTTGAG
CTTTGCTCCCGACCCTTCCATCAAGTTGGACTACCGGCAAAAGGTTTTGATCGATCGATTGATTG
GATGTAGAAGGGGTTGATGGAAGTGTGAGATCAGACAGACCGAGCACTGCTGCAGGATTGGACGT
CTATCTATCTCACCACGTCAATGACGGCGGAAGGAATGCCCTTCTTTCTGACGGCTCGTTACCGC
AGCGCTCGTTCACACCAATCCAACCAGTATCAAACTCCGCTCTGGCATTATGGAACGAAAGAGAT
GCCGGGTCGGTCAATTGCATTAGGTAGTAGATGCAGGACCCGTCAGAACCGCAAGTGCATTCGCT
ATTCGATTCCATCCGCGATCCCACCTACCTACACTTCGGTAGGTCACCTTTCTTTCTTCTCTATG
TCGCCGTCTCATCAATGAGCGGAGATGGCTGGAGATGGCTTTTGC
Found at i:250762 original size:19 final size:19
Alignment explanation
Indices: 250714--250771 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
250704 ACGCTTTGCT
*
250714 CGTTTAGCTTTGCTCGCGA
1 CGTTCAGCTTTGCTCGCGA
250733 CGTTTCA-CTTTGCTCGCGA
1 CG-TTCAGCTTTGCTCGCGA
* *
250752 CGTTGAGCTTTGCTCCCGA
1 CGTTCAGCTTTGCTCGCGA
250771 C
1 C
250772 CCTTCCATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.09
19 28 0.82
20 3 0.09
ACGTcount: A:0.10, C:0.31, G:0.24, T:0.34
Consensus pattern (19 bp):
CGTTCAGCTTTGCTCGCGA
Left flanking sequence: Indices 250214 -- 250713
GTGGTGTCCTCCCCTCCCGAAGACCTTAACCAACGTTCCGTCTATGGAGCAACTTCCACCAACGT
TGCAGTAAGCAGTAAGCTGGCCCAGTCTCTCGCCCAGCTTCGCCTTCTTCCGTGGCCAAGTGGAA
GCGTTCAACGGCAGCCTACAACCTTTCCGCGTTCCACAAGGTGGAGCTTGTTCAATGGAATGGAA
GCCTAATGCGACCCTTGAAAAAGAGAAAGCGTGAAAAGCACTCTATCACTCAAAGCACTCTATCG
CAAGTCAAAGCACTCGCACACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATATCACGCTCAA
AGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTCGCAAGTCAAAGCA
CTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTT
TGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCT
Right flanking sequence: Indices 250772 -- 251271
CCTTCCATCAAGTTGGACTACCGGCAAAAGGTTTTGATCGATCGATTGATTGGATGTAGAAGGGG
TTGATGGAAGTGTGAGATCAGACAGACCGAGCACTGCTGCAGGATTGGACGTCTATCTATCTCAC
CACGTCAATGACGGCGGAAGGAATGCCCTTCTTTCTGACGGCTCGTTACCGCAGCGCTCGTTCAC
ACCAATCCAACCAGTATCAAACTCCGCTCTGGCATTATGGAACGAAAGAGATGCCGGGTCGGTCA
ATTGCATTAGGTAGTAGATGCAGGACCCGTCAGAACCGCAAGTGCATTCGCTATTCGATTCCATC
CGCGATCCCACCTACCTACACTTCGGTAGGTCACCTTTCTTTCTTCTCTATGTCGCCGTCTCATC
AATGAGCGGAGATGGCTGGAGATGGCTTTTGCCGGTCAATTCAGTCTTCTGGCATAGTTTTGTTG
GATCAAAGATCGGCAGGTGATCCGTCCTTTCTCCTCTGCCGTGGT
Found at i:257073 original size:19 final size:19
Alignment explanation
Indices: 257008--257062 Score: 110
Period size: 19 Copynumber: 2.9 Consensus size: 19
256998 TCTTGCGAGC
257008 GCTTTGCTCGCGACGTTGA
1 GCTTTGCTCGCGACGTTGA
257027 GCTTTGCTCGCGACGTTGA
1 GCTTTGCTCGCGACGTTGA
257046 GCTTTGCTCGCGACGTT
1 GCTTTGCTCGCGACGTT
257063 TCACTTTGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.09, C:0.27, G:0.31, T:0.33
Consensus pattern (19 bp):
GCTTTGCTCGCGACGTTGA
Left flanking sequence: Indices 256508 -- 257007
GGAGTTGGCTGCTGGCACAACAGGGTGGTGCCTTACCGCACCGCAGGCGGACGCGCGGTAGCGTT
CGTGGTGGTGCATCAGGATTCCAATGTACTGCGTCCAAGATCAGAACGAGCTTGCCGGCGGACCA
CTGCCGTCCCATTCTTGAGTGAGCTGGAGCGCAGCCATCTTATCCACTGAACTAGCGTCAAGCGT
TTGCTTCGGGTCGAAGCACTAAAAGAAAAGGACCGGGAAACGCGGCGGCATAGGAACCACGGGAC
CCAGGAGAAAGACGATGTACGGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCGAG
AGAGGGTAGCCTTTAGAAGCAACAGGTTGGCAAGAGAACGCTTCGCGTTTTCTTATCCGCCCTAA
GAGTAGCAAAAAAAGAGGGCCATGATAAACCAACTAATCCAACGTCACGTCACGTCACGTCAATT
GATGAGCCCCCAACTTTCTGTCGGGAGCAAAGCTATCTTGCGAGC
Right flanking sequence: Indices 257063 -- 257562
TCACTTTGCTCCCTCCCTTCTGTTTAGCTTTGCTCCCGACGAAAAGTTGGGCAAAGCACAAAATC
AAGCACTCGCTTTTCAGTGCTCATGACGTGACACGCAAAGCTTTGCGAGTGCTTTGACCGTTCTG
TTCTCATAGCGATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGT
GCTAATGCTGAGCCAAGGACGCTCCGCGTTATCTTTATATATAAGCAGTCAACTGAGTTCTGAAC
GGATCAGCTCCTTGGTAATGGCTAAATCTATAGATAGAGAGCCCTATGATGGGAAACTACCACGT
TAGGTTTGGAGAGAGATGAGACCGGTTATATATAGAAAAGGGGGCGGATGCAAGCTTTTTCTTTC
ATTTCCATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCCACCTCAATTCACCATTTCGA
ACCTTATACAGAAGGTTTCTCCGTACCAGCTTCTTCTACATATAC
Found at i:260093 original size:49 final size:49
Alignment explanation
Indices: 260038--260379 Score: 358
Period size: 49 Copynumber: 7.6 Consensus size: 49
260028 CGCGAGCACT
260038 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
*
260087 CTTGCGAGCGC--T---TT-GTGCAAAGCATCGC------GTGC--TGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
260122 CTTGCGAGCG------CTTAATGCAAAGCATCGC------GTGC--TGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
260157 CTTGCGAGCG------CTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
260200 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
260249 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
*
260298 CTTGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG-ATA----GAGTGCTTTGA
**
260352 CTTGCGAGCG-TTTCACTTTGTGCAAAGC
1 CTTGCGAGCGCTTTCACTTAATGCAAAGC
260380 CCAGTTATAA
Statistics
Matches: 267, Mismatches: 5, Indels: 38
0.86 0.02 0.12
Matches are distributed among these distances:
34 2 0.01
35 61 0.23
37 4 0.01
41 4 0.01
43 26 0.10
44 2 0.01
47 1 0.00
49 127 0.48
50 3 0.01
53 16 0.06
54 21 0.08
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (49 bp):
CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 259538 -- 260037
ATGGATGCATCCTCATCAGAAGATGCGAGCTCTAGCTCTTCCTCTGATGAGGTTTCTGTATCCGA
GGATGAGCCAGAGGGCGAGGTTTCCTCGGAAGTGGAAGAATCTACTCCGTTGGGGCAACTGGGGG
GAACGAGAGAAGGATCTCTTTGATCGGGCCCAATCCCTATTGAGACGGGAAGAAATATATAGGGA
CTGGGAGTACTTCTTCCTCGCACGCAACCTGAACGAGGCTGCCGCCCACGGTGAGCGAGCGTACC
AATCTTGTCTCGACTTTGAAGAGGGGGAAGTCGGGATGATTGAAAAAAGAAGCGAAGGGATCGCC
TCATCGATCTCCTTCTTCATGATAGGGATCCCCAGGTCCTCGCTTATAGGCAGGAAAACCCCGAC
CCAACGACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAAAAATAAAAAGATCATCCT
AACTTGATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACT
Right flanking sequence: Indices 260380 -- 260879
CCAGTTATAACTATTCGAGCAAAGCCCTGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
GTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACGTGCGAGTGCTTTGAGCGATAGAGTGC
TTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCT
TTTTATTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATGGCT
CTGATCCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACACATCAATCTTCTTTCTGAATTTA
TCCAACATTCCACGTTCCCGAAACGGATCCTATCAAATATTTCACATTGTCAGTGATAATTTCTC
TCTTAGGTATTTGGGGGATCCTCCTAAATAGACGAAATATTCTTATTATGTTAATGCCAATTGAA
TCAATGTTACTAGCAGTCAATTCGAACTTTTTGGTATTTTCTGTT
Found at i:260126 original size:35 final size:35
Alignment explanation
Indices: 260084--260185 Score: 186
Period size: 35 Copynumber: 2.9 Consensus size: 35
260074 TAGAGTGCTT
**
260084 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGC
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
260119 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
260154 TGACTTGCGAGCGCTTAATGCAAAGCATCGCG
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCG
260186 ATAGAGTGCT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (35 bp):
TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
Left flanking sequence: Indices 259584 -- 260083
ATGAGGTTTCTGTATCCGAGGATGAGCCAGAGGGCGAGGTTTCCTCGGAAGTGGAAGAATCTACT
CCGTTGGGGCAACTGGGGGGAACGAGAGAAGGATCTCTTTGATCGGGCCCAATCCCTATTGAGAC
GGGAAGAAATATATAGGGACTGGGAGTACTTCTTCCTCGCACGCAACCTGAACGAGGCTGCCGCC
CACGGTGAGCGAGCGTACCAATCTTGTCTCGACTTTGAAGAGGGGGAAGTCGGGATGATTGAAAA
AAGAAGCGAAGGGATCGCCTCATCGATCTCCTTCTTCATGATAGGGATCCCCAGGTCCTCGCTTA
TAGGCAGGAAAACCCCGACCCAACGACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAA
AAAATAAAAAGATCATCCTAACTTGATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTC
TTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTT
Right flanking sequence: Indices 260186 -- 260685
ATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACT
TGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACT
TAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCC
CAGTTATAACTATTCGAGCAAAGCCCTGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAG
TGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACGTGCGAGTGCTTTGAGCGATAGAGTGCT
TTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCTT
TTTATTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATGGCTC
TGATCCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACACATC
Found at i:260435 original size:20 final size:17
Alignment explanation
Indices: 260410--260571 Score: 130
Period size: 20 Copynumber: 8.9 Consensus size: 17
260400 AAAGCCCTGT
260410 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GC
*
260430 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGC
* *
260447 GAGAGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GC
260467 GTGCGAGTGCTTTGA-C
1 GTGCGAGTGCTTTGAGC
260483 GTGCGAGTGCTTTGAGC
1 GTGCGAGTGCTTTGAGC
* *
260500 GAT-AGAGTGCTTTGAGT
1 G-TGCGAGTGCTTTGAGC
* *
260517 GAGAGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GC
260537 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GC
260557 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
260572 TCTTTTTATT
Statistics
Matches: 121, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
16 16 0.13
17 41 0.34
18 1 0.01
20 63 0.52
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (17 bp):
GTGCGAGTGCTTTGAGC
Left flanking sequence: Indices 259910 -- 260409
AGGCAGGAAAACCCCGACCCAACGACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAA
AAATAAAAAGATCATCCTAACTTGATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCT
TGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTT
AATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG
ATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACT
TGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTT
CACTTTGTGCAAAGCCCAGTTATAACTATTCGAGCAAAGCCCTGT
Right flanking sequence: Indices 260572 -- 261071
TCTTTTTATTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATG
GCTCTGATCCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACACATCAATCTTCTTTCTGAAT
TTATCCAACATTCCACGTTCCCGAAACGGATCCTATCAAATATTTCACATTGTCAGTGATAATTT
CTCTCTTAGGTATTTGGGGGATCCTCCTAAATAGACGAAATATTCTTATTATGTTAATGCCAATT
GAATCAATGTTACTAGCAGTCAATTCGAACTTTTTGGTATTTTCTGTTTCTTCGGATGATATGAC
GGGCCAGTCATTTGCTTCATTGGTTCCAACGGTGGCAGCAGCGGAATCTGCTATTGGGTCAGCCA
TTCTTGTTATTACTTTCCGAATCCGAGGGACTATTGCTGTAGAATCTATTAATTGCATGAAGGGC
TAGTTAGGTAATTAATCTGAATGCAAAAGTAGTTAGTTTTTTTCT
Found at i:260456 original size:17 final size:17
Alignment explanation
Indices: 260434--260531 Score: 92
Period size: 17 Copynumber: 5.6 Consensus size: 17
260424 ACTTGCGTGC
260434 GAGTGCTTTGAGTGAGA
1 GAGTGCTTTGAGTGAGA
* * *
260451 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGA---GTGAGA
*
260471 GAGTGCTTTGACGT--GC
1 GAGTGCTTTGA-GTGAGA
* *
260487 GAGTGCTTTGAGCGATA
1 GAGTGCTTTGAGTGAGA
260504 GAGTGCTTTGAGTGAGA
1 GAGTGCTTTGAGTGAGA
260521 GAGTGCTTTGA
1 GAGTGCTTTGA
260532 CTTGCGTGCG
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
15 1 0.02
16 13 0.20
17 37 0.56
18 1 0.02
20 14 0.21
ACGTcount: A:0.18, C:0.12, G:0.38, T:0.32
Consensus pattern (17 bp):
GAGTGCTTTGAGTGAGA
Left flanking sequence: Indices 259934 -- 260433
ACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAAAAATAAAAAGATCATCCTAACTTG
ATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAA
AGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGA
GCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTG
CTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
CTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAA
AGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAGTTATA
ACTATTCGAGCAAAGCCCTGTGTGCGAGTGCTTTGACTTGCGTGC
Right flanking sequence: Indices 260532 -- 261031
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCTTTTTATTTTTCACTGGGAACCT
CAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATGGCTCTGATCCGGCGAGCGAGCAATT
CTTGGATCCACACGAGTACACATCAATCTTCTTTCTGAATTTATCCAACATTCCACGTTCCCGAA
ACGGATCCTATCAAATATTTCACATTGTCAGTGATAATTTCTCTCTTAGGTATTTGGGGGATCCT
CCTAAATAGACGAAATATTCTTATTATGTTAATGCCAATTGAATCAATGTTACTAGCAGTCAATT
CGAACTTTTTGGTATTTTCTGTTTCTTCGGATGATATGACGGGCCAGTCATTTGCTTCATTGGTT
CCAACGGTGGCAGCAGCGGAATCTGCTATTGGGTCAGCCATTCTTGTTATTACTTTCCGAATCCG
AGGGACTATTGCTGTAGAATCTATTAATTGCATGAAGGGCTAGTT
Found at i:260464 original size:37 final size:37
Alignment explanation
Indices: 260414--260551 Score: 198
Period size: 37 Copynumber: 3.8 Consensus size: 37
260404 CCCTGTGTGC
260414 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGA
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGA
*
260451 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGACGT--GC
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA-GTGAGA
*
260487 GAGTGCTTTGA---GCGAT-AGAGTGCTTTGAGTGAGA
1 GAGTGCTTTGACTTGCG-TGCGAGTGCTTTGAGTGAGA
260521 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
260552 CTTGCGTGCG
Statistics
Matches: 89, Mismatches: 4, Indels: 16
0.82 0.04 0.15
Matches are distributed among these distances:
32 2 0.02
33 14 0.16
34 13 0.15
36 13 0.15
37 45 0.51
38 2 0.02
ACGTcount: A:0.16, C:0.14, G:0.37, T:0.33
Consensus pattern (37 bp):
GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGA
Left flanking sequence: Indices 259914 -- 260413
AGGAAAACCCCGACCCAACGACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAAAAAT
AAAAAGATCATCCTAACTTGATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCG
AGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATG
CAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAG
AGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCG
AGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACT
TTGTGCAAAGCCCAGTTATAACTATTCGAGCAAAGCCCTGTGTGC
Right flanking sequence: Indices 260552 -- 261051
CTTGCGTGCGAGTGCTTTGATCTTTTTATTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTC
TCAATCTATAAGGAGTGATGGCTCTGATCCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACA
CATCAATCTTCTTTCTGAATTTATCCAACATTCCACGTTCCCGAAACGGATCCTATCAAATATTT
CACATTGTCAGTGATAATTTCTCTCTTAGGTATTTGGGGGATCCTCCTAAATAGACGAAATATTC
TTATTATGTTAATGCCAATTGAATCAATGTTACTAGCAGTCAATTCGAACTTTTTGGTATTTTCT
GTTTCTTCGGATGATATGACGGGCCAGTCATTTGCTTCATTGGTTCCAACGGTGGCAGCAGCGGA
ATCTGCTATTGGGTCAGCCATTCTTGTTATTACTTTCCGAATCCGAGGGACTATTGCTGTAGAAT
CTATTAATTGCATGAAGGGCTAGTTAGGTAATTAATCTGAATGCA
Found at i:260497 original size:53 final size:54
Alignment explanation
Indices: 260410--260514 Score: 158
Period size: 53 Copynumber: 1.9 Consensus size: 54
260400 AAAGCCCTGT
*
260410 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA--T-CGTGCGAGTGCTTTGAGCGAGAGAGTGCTTTGACTTGC
*
260467 GTGCGAGTGCTTTGA-CGTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
1 GTGCGAGTGCTTTGATCGTGCGAGTGCTTTGAGCGAGAGAGTGCTTTGA
260515 GTGAGAGAGT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
53 31 0.67
57 15 0.33
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.32
Consensus pattern (54 bp):
GTGCGAGTGCTTTGATCGTGCGAGTGCTTTGAGCGAGAGAGTGCTTTGACTTGC
Left flanking sequence: Indices 259910 -- 260409
AGGCAGGAAAACCCCGACCCAACGACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAA
AAATAAAAAGATCATCCTAACTTGATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCT
TGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTT
AATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG
ATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACT
TGCGAGCGCTTTCACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTT
CACTTTGTGCAAAGCCCAGTTATAACTATTCGAGCAAAGCCCTGT
Right flanking sequence: Indices 260515 -- 261014
GTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCTTTTTA
TTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATGGCTCTGAT
CCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACACATCAATCTTCTTTCTGAATTTATCCAA
CATTCCACGTTCCCGAAACGGATCCTATCAAATATTTCACATTGTCAGTGATAATTTCTCTCTTA
GGTATTTGGGGGATCCTCCTAAATAGACGAAATATTCTTATTATGTTAATGCCAATTGAATCAAT
GTTACTAGCAGTCAATTCGAACTTTTTGGTATTTTCTGTTTCTTCGGATGATATGACGGGCCAGT
CATTTGCTTCATTGGTTCCAACGGTGGCAGCAGCGGAATCTGCTATTGGGTCAGCCATTCTTGTT
ATTACTTTCCGAATCCGAGGGACTATTGCTGTAGAATCTATTAAT
Found at i:260526 original size:70 final size:71
Alignment explanation
Indices: 260434--260571 Score: 242
Period size: 70 Copynumber: 1.9 Consensus size: 71
260424 ACTTGCGTGC
260434 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA-CGTGCGAGTGCTTTGA
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCGTGCGAGTGCTTTGA
260498 GCGATA
66 GCGATA
260504 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTT
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA--T-CGTGCGAGTGCTT
260569 TGA
63 TGA
260572 TCTTTTTATT
Statistics
Matches: 64, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
70 48 0.75
74 16 0.25
ACGTcount: A:0.16, C:0.14, G:0.37, T:0.33
Consensus pattern (71 bp):
GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCGTGCGAGTGCTTTGA
GCGATA
Left flanking sequence: Indices 259934 -- 260433
ACTCCAAGGGGCTTTTCTCTTTTTTGCTTTCGATGACAAAAAAATAAAAAGATCATCCTAACTTG
ATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAA
AGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGA
GCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTG
CTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
CTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAA
AGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAGTTATA
ACTATTCGAGCAAAGCCCTGTGTGCGAGTGCTTTGACTTGCGTGC
Right flanking sequence: Indices 260572 -- 261071
TCTTTTTATTTTTCACTGGGAACCTCAATTTCAAGAACTATGTTCTCAATCTATAAGGAGTGATG
GCTCTGATCCGGCGAGCGAGCAATTCTTGGATCCACACGAGTACACATCAATCTTCTTTCTGAAT
TTATCCAACATTCCACGTTCCCGAAACGGATCCTATCAAATATTTCACATTGTCAGTGATAATTT
CTCTCTTAGGTATTTGGGGGATCCTCCTAAATAGACGAAATATTCTTATTATGTTAATGCCAATT
GAATCAATGTTACTAGCAGTCAATTCGAACTTTTTGGTATTTTCTGTTTCTTCGGATGATATGAC
GGGCCAGTCATTTGCTTCATTGGTTCCAACGGTGGCAGCAGCGGAATCTGCTATTGGGTCAGCCA
TTCTTGTTATTACTTTCCGAATCCGAGGGACTATTGCTGTAGAATCTATTAATTGCATGAAGGGC
TAGTTAGGTAATTAATCTGAATGCAAAAGTAGTTAGTTTTTTTCT
Found at i:264432 original size:19 final size:19
Alignment explanation
Indices: 264408--264474 Score: 125
Period size: 19 Copynumber: 3.5 Consensus size: 19
264398 CTCGCAAGAG
264408 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
*
264427 TGCTCGCGACGTTTAGCTT
1 TGCTCGCGACGTTGAGCTT
264446 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
264465 TGCTCGCGAC
1 TGCTCGCGAC
264475 CCTTCCGTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 46 1.00
ACGTcount: A:0.10, C:0.28, G:0.30, T:0.31
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 263908 -- 264407
AATTGCTACTATCCCAAACACGTCATGGTACGGGATTATTTGGACTACAAGATCAAACCAGATCA
TAGAACTGGACCTGACAAGTAATGTGAAACAGATTCATTTCTGATTTTGATCTATAATCCTTTTC
CTTAGTTGGCGCAATTGCTATGGCTCGCCGGGAATAGATACTTAGAATTTCCAATAACAAACCAA
CCAAATAAAATAAAGCAAAGCAAATAAGGTCTTCCTCCGTGTAATTGTTATCGCATCTGTCCACC
CTAAATTGGAATATTGTGAATGAGACATATTGCAAAGTTTTTGTTAGTTCGACGATCAAAGCACT
CGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTT
TGCACAAAGTGAAACGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAG
Right flanking sequence: Indices 264475 -- 264974
CCTTCCGTTGAGCTTTGCTCGCGACCCTTCCGTTGAGCTTTGCTCCCGACCCTTCCGTTTGGGCT
TTGCTCATCAAGTTGGGGGCTTTGCACAAAACAAAGCACGCACTCTATAAGCCCCCACCGCTTTG
CGAGTGCGTGCTTTGTGCTTTGCCCTACGCTTTGCGAGTGCTTTGACATATGTAAGGTGAGTGCA
ATAGCTTCCCAACGCATGCATGATTGACTAGATATCGAGCTTACCCAGTAGGGAGGGGCCATATA
ACGGAACCGCCAAGGTCTCGACCTACAGGGGTCAGAACTGCCAGGGTAACAACCCTTAACATCTG
AAGATCAGAAGGACACGCCGGGCAGATGGAATGCCTTATGTAGTTCAAAGGGCAATGGCAACAAC
CCCTGCTACGAAGGCTAGGGATACGCGAACAACTCAGCCATTGACTAATGGCAGACCAATGCAAG
ACCTATCAGATTTCAGACACATGCGGCTCAAGAGCAGGGGTAGCC
Found at i:264489 original size:25 final size:25
Alignment explanation
Indices: 264455--264545 Score: 155
Period size: 25 Copynumber: 3.6 Consensus size: 25
264445 TTGCTCGCGA
264455 CGTTGAGCTTTGCTCGCGACCCTTC
1 CGTTGAGCTTTGCTCGCGACCCTTC
264480 CGTTGAGCTTTGCTCGCGACCCTTC
1 CGTTGAGCTTTGCTCGCGACCCTTC
*
264505 CGTTGAGCTTTGCTCCCGACCCTTC
1 CGTTGAGCTTTGCTCGCGACCCTTC
*
264530 CGTTTGGGCTTTGCTC
1 CG-TTGAGCTTTGCTC
264546 ATCAAGTTGG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 51 0.81
26 12 0.19
ACGTcount: A:0.07, C:0.35, G:0.24, T:0.34
Consensus pattern (25 bp):
CGTTGAGCTTTGCTCGCGACCCTTC
Left flanking sequence: Indices 263955 -- 264454
CAAGATCAAACCAGATCATAGAACTGGACCTGACAAGTAATGTGAAACAGATTCATTTCTGATTT
TGATCTATAATCCTTTTCCTTAGTTGGCGCAATTGCTATGGCTCGCCGGGAATAGATACTTAGAA
TTTCCAATAACAAACCAACCAAATAAAATAAAGCAAAGCAAATAAGGTCTTCCTCCGTGTAATTG
TTATCGCATCTGTCCACCCTAAATTGGAATATTGTGAATGAGACATATTGCAAAGTTTTTGTTAG
TTCGACGATCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCACGCAAGAGAG
CTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCGCAAGTCAAAGCACTCTATCGCGATGCT
TTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTG
CTCGCGACGTTGAGCTTTGCTCGCGACGTTTAGCTTTGCTCGCGA
Right flanking sequence: Indices 264546 -- 265045
ATCAAGTTGGGGGCTTTGCACAAAACAAAGCACGCACTCTATAAGCCCCCACCGCTTTGCGAGTG
CGTGCTTTGTGCTTTGCCCTACGCTTTGCGAGTGCTTTGACATATGTAAGGTGAGTGCAATAGCT
TCCCAACGCATGCATGATTGACTAGATATCGAGCTTACCCAGTAGGGAGGGGCCATATAACGGAA
CCGCCAAGGTCTCGACCTACAGGGGTCAGAACTGCCAGGGTAACAACCCTTAACATCTGAAGATC
AGAAGGACACGCCGGGCAGATGGAATGCCTTATGTAGTTCAAAGGGCAATGGCAACAACCCCTGC
TACGAAGGCTAGGGATACGCGAACAACTCAGCCATTGACTAATGGCAGACCAATGCAAGACCTAT
CAGATTTCAGACACATGCGGCTCAAGAGCAGGGGTAGCCAGCTCGGGCGGAGATTGATAAAACAA
GGCGGAATGCGGTGCCTGGGATCAGAAATTCTTCCGCTTGTCGGG
Found at i:266471 original size:29 final size:27
Alignment explanation
Indices: 266434--266514 Score: 112
Period size: 25 Copynumber: 3.0 Consensus size: 27
266424 CAAAAATTGA
*
266434 TCGGAAGGGTCGGGAGCAAAGCTCAACC
1 TCGGAAGGGTCGCGAGCAAAGCTCAA-C
*
266462 TTCGGGAGGGTCGCGAGCAAAGCTCAA-
1 -TCGGAAGGGTCGCGAGCAAAGCTCAAC
266489 -CGGAAGGGTCGCGAGCAAAGCTCAAC
1 TCGGAAGGGTCGCGAGCAAAGCTCAAC
266515 GTCGCGAGCA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
25 24 0.50
29 24 0.50
ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11
Consensus pattern (27 bp):
TCGGAAGGGTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 265934 -- 266433
GCAGATGGATCATCGACGGTTTTTGTATGATATGAGAAAGTGCTAGGGCTTATAGTGAGATTAGT
CAGCAGAAGGACCTTCCCTAGCACTTTCTCATATCAGCTGACTAATCTCACTATAAGCATAATCA
GAGTTTGTTTCACTTCACTAGGCATGGGACGAGGAGAGAGATCCGTGCGCTTAGGTTCGGACCAC
ACATCCCCTTTGCGTGCTCGCGGATCCACCCCGAGGGCGAGCTACGAAGACCATGTGCCTAATAC
TAATAGGAGTGACTTATGGGAATGGCCGGAGAGCGCTCTTTACCCACCAAAGCACCCGCTGCAGA
GGAAGCACCGAAGCTCGTGGAAGAGTCCAACGAGTTCTTCGTCACCAGCATCCGTTGCAAGGGCA
AAGGCGAAGCCCAACGTCATGTCACGTCATGAGCACTGAAAAGCGAGTGCTTTGAGAGAGGGAAT
TTGCAAATTTTGCTTTGTTATTGTACGAGCAAAAGCAAAAATTGA
Right flanking sequence: Indices 266515 -- 267014
GTCGCGAGCAAAGCTATCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGGAACGTTTTGC
GAGTGCTTTTTGGTGATGAACAATGTAGTGTAGTAATGTAGTGAAAGTTTGTTGTTCTTGTCCCA
GCCCCGAAAGTGGAGTTAGAGACGGGGACGAAACGGAAGGACCAGTCATCGCAAAGCGGAATGAA
AAGTCCATTGTGTCATTCTTCCCGGTCTTATCCGAACGGGAGCAGCGAAGCATAGAATGTATTAG
AGATCGTGGTGGCGAGGAAGAGGCAGGTCGTGGTGGGATGCTCTCATCAGCTTCTAGGGCAGGAA
GGTCGATCCTGGAGAAGAGGCAGTTGGTTGGGTAAGCTGGATAACTAGGCGTATATAGTGGGCTC
ACCAACACCAAAACAAAATGGATAACTAGTGGATAACTAGGCGTATATAGTGGGCTCCTCTGCTG
GATATACGTAGTAGAGTCCTATTTACCTAGTAGTTAGTTGCGCCT
Found at i:268686 original size:44 final size:45
Alignment explanation
Indices: 268597--268704 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
268587 TCAACTTGAT
* * *
268597 GAGAAGGGTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGTGAAAC
1 GAGAAGGGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAAC
268642 G-GAAGGGTCGCGAGCAAAG-TGAAACGTCGCGAGCAAAGCT-AAAC
1 GAGAAGGGTCGCGAGCAAAGCT-AAACGTCGCGAGCAAAG-TGAAAC
*
268686 GAGCAAAGCGTCGCGAGCA
1 GAG--AAGGGTCGCGAGCA
268705 CTCTTGCGAG
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
43 1 0.02
44 37 0.69
45 3 0.06
47 13 0.24
ACGTcount: A:0.35, C:0.20, G:0.36, T:0.08
Consensus pattern (45 bp):
GAGAAGGGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAAC
Left flanking sequence: Indices 268097 -- 268596
GGTTTTTCTACAGACCTATAGCCCATCATCCCACTCATATGTACTTGGTTCTTCATTCCATCCGT
CTTTCCCGTTCGTATACACTACCCGCCCCGAACCACAGATGAATATTCCATCGCTCACCCTGACC
CTGGTTTGATATGCGCGTAATACCTTTCAACAGGAGGAATACTGATCATTCGGTCTTTGTCAAGA
AGCGGAAGGAAAGTACTTCTAAATGATGGAAAATGCCAAAACCTTCTTTCTTTTTCTGTCCGAAT
CGGCTCCAGCAACTGGGGAAGGTGTTATTGAATCCGCTACTGGGGACTGTCTTGGTTACCATTGA
TACACAAAGTGAGTGCTCTGTCGCCGTGGTAATGGACTTGATAAGGGAGGTCAAGGTCAGGTAGT
GCGAGACCCTAGCAGCTGGATAAATCAATCATAGTGAATATACCGATCCGGATCCGGACAAGGGA
AGTGCTCCTATACTTCTCTATCAAACCTTTCTCATTCAACTTGAT
Right flanking sequence: Indices 268705 -- 269204
CTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTG
AACTTAATGCAAAGCATCGCGTATATTGCGTGCGAGTGCTTTGACTGCATAGAAGAAAAACCGAA
CAAGGGGTCCCACTTGGAGATGAAGTCGAACTATACCTTTCGCGGTTCGAGTGGTCCCGTCATAT
GCACGAACAGCTGTAGTGAAGAGCAAACCGGGGAAACAGCCTAGCTGTACTCAATGTGCAAATAT
CATGGTTGACGTAAGGCCTGCACCAGTGTCTATCAAGACCCTCTTTCTTTTGTAGTGGTCTACAA
AGGCCTCTACATACAGGGGTCGGGGGATAGCGAATGTCAGGCAAAGAATGATGAGTGAAGGTAAT
TGGTTGGGGCCCACCATAGCTTGCTTCCGGTAGAATGGAATTAGGGACGCTTGCTTGTGCTAGCT
TTTGCCAGCCCGATGGACTTGTTCAGTGGCCCGGTAAGAGAATTC
Found at i:274702 original size:20 final size:20
Alignment explanation
Indices: 274679--274764 Score: 142
Period size: 20 Copynumber: 4.5 Consensus size: 20
274669 CAAAGCGTGA
274679 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
274699 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
*
274719 AAAGCACTCGCA--C-ACTC
1 AAAGCACTCGCACGCAAGTC
274736 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
274756 AAAGCACTC
1 AAAGCACTC
274765 TATCGCGATG
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
17 15 0.25
18 1 0.02
19 1 0.02
20 44 0.72
ACGTcount: A:0.36, C:0.36, G:0.17, T:0.10
Consensus pattern (20 bp):
AAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 274179 -- 274678
AAGCCAGGTGCCGGAGGTCAGCTATTCGGCCCGGAGCATAGATTCCCAAAAGAGGCTAGGCTCTA
TCTCTCTCTCGAGAAGGTCAATCAAACAGTTCCTCGGCTCCACCTTGAGGTTCATTTAGTTGTCT
TACATGAGACTCGGGATATTCCCCACTCCATGGCACCTTTCGCTCATCCATTCCGCCCGCCCGTC
CAGACGCGGCGCCCTTTCTAATTATCATCTACCGCCCTTTCTTTCCTCCGGAACCTCGATATCGG
GCACGCATGAAGATCGTCGTATGCTCCGGTTGCCGGTTCAATAAATAGGTAGGAGTACATTATGG
CAGGATCAGTCACCCGGGCAAACAAACCCTCCTCCAAGAAGAATTGTGCTATGCCCCTCACTTTG
ACGAGCAAAGCCCAAAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCA
CTCGCAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 274765 -- 275264
TATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAG
TGAAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCATCAATTGACGT
GACGTGACGTGACGTGACATGACGTGACATGACACGCAAAGCTTTGCGAGTGCTTCTTCCCCCCG
ATCCCTATAGAGCAAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGGTCGTTAACTCC
TTGCGCCGCTGCCGCCGTTTCTAGGACCGACCCACGCCTCACCTGCACAGGTACCTCCGTAGTGT
TAGTGTAGTGTCGGTCGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACAAGGGGA
GTTCCCTTGCTCCTGCTGCGTACGATTAGCCAGCCTTGCGGCGGCAAAAGGATTCGACGTCCCCC
CATGCTACGGTTCCCTGCGGTCCGAACCCGGTGCCGCATTAGGTT
Found at i:274747 original size:37 final size:39
Alignment explanation
Indices: 274679--274764 Score: 140
Period size: 37 Copynumber: 2.2 Consensus size: 39
274669 CAAAGCGTGA
*
274679 AAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCAC-CAACTCAAAGCACTCGCACGCAAGTC
274719 AAAGCACTCGCA-C-ACTCAAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACCAACTCAAAGCACTCGCACGCAAGTC
274756 AAAGCACTC
1 AAAGCACTC
274765 TATCGCGATG
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
37 32 0.71
38 1 0.02
40 12 0.27
ACGTcount: A:0.36, C:0.36, G:0.17, T:0.10
Consensus pattern (39 bp):
AAAGCACTCGCACCAACTCAAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 274179 -- 274678
AAGCCAGGTGCCGGAGGTCAGCTATTCGGCCCGGAGCATAGATTCCCAAAAGAGGCTAGGCTCTA
TCTCTCTCTCGAGAAGGTCAATCAAACAGTTCCTCGGCTCCACCTTGAGGTTCATTTAGTTGTCT
TACATGAGACTCGGGATATTCCCCACTCCATGGCACCTTTCGCTCATCCATTCCGCCCGCCCGTC
CAGACGCGGCGCCCTTTCTAATTATCATCTACCGCCCTTTCTTTCCTCCGGAACCTCGATATCGG
GCACGCATGAAGATCGTCGTATGCTCCGGTTGCCGGTTCAATAAATAGGTAGGAGTACATTATGG
CAGGATCAGTCACCCGGGCAAACAAACCCTCCTCCAAGAAGAATTGTGCTATGCCCCTCACTTTG
ACGAGCAAAGCCCAAAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCA
CTCGCAAAGAGTGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 274765 -- 275264
TATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAG
TGAAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCATCAATTGACGT
GACGTGACGTGACGTGACATGACGTGACATGACACGCAAAGCTTTGCGAGTGCTTCTTCCCCCCG
ATCCCTATAGAGCAAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGGTCGTTAACTCC
TTGCGCCGCTGCCGCCGTTTCTAGGACCGACCCACGCCTCACCTGCACAGGTACCTCCGTAGTGT
TAGTGTAGTGTCGGTCGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACAAGGGGA
GTTCCCTTGCTCCTGCTGCGTACGATTAGCCAGCCTTGCGGCGGCAAAAGGATTCGACGTCCCCC
CATGCTACGGTTCCCTGCGGTCCGAACCCGGTGCCGCATTAGGTT
Found at i:274928 original size:5 final size:5
Alignment explanation
Indices: 274889--274927 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
274879 TTCCATCAAT
* *
274889 TGACG TGACG TGACG TGACG TGACA TGACG TGACA TGAC
1 TGACG TGACG TGACG TGACG TGACG TGACG TGACG TGAC
274928 ACGCAAAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.21
Consensus pattern (5 bp):
TGACG
Left flanking sequence: Indices 274389 -- 274888
TTCTAATTATCATCTACCGCCCTTTCTTTCCTCCGGAACCTCGATATCGGGCACGCATGAAGATC
GTCGTATGCTCCGGTTGCCGGTTCAATAAATAGGTAGGAGTACATTATGGCAGGATCAGTCACCC
GGGCAAACAAACCCTCCTCCAAGAAGAATTGTGCTATGCCCCTCACTTTGACGAGCAAAGCCCAA
AAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCACTCGCAAAGAGTGCT
TTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGC
AAGTCAAAGCACTCGCACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCGCGATGCTTT
GCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCA
AGAGTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCCATCAAT
Right flanking sequence: Indices 274928 -- 275427
ACGCAAAGCTTTGCGAGTGCTTCTTCCCCCCGATCCCTATAGAGCAAAAGAGCTGCCTGGTGATC
CCTAGGTTGCAGCACGTCCGGTCGTTAACTCCTTGCGCCGCTGCCGCCGTTTCTAGGACCGACCC
ACGCCTCACCTGCACAGGTACCTCCGTAGTGTTAGTGTAGTGTCGGTCGCACATTCAACATAGCG
TTCGGACTCATGTGCCTTCCAGAACAAGGGGAGTTCCCTTGCTCCTGCTGCGTACGATTAGCCAG
CCTTGCGGCGGCAAAAGGATTCGACGTCCCCCCATGCTACGGTTCCCTGCGGTCCGAACCCGGTG
CCGCATTAGGTTAGGGAGCAGGGCGATAATAGCTCCTCCGCATCCCAAAGCGCGCTGCCCTCCTA
GGCGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGACTAACGGTGGATAAGAATCTTTC
TTAGAAGTACTAAATACAACTCCATGAATGAGCAAAATGGAGGTT
Found at i:276854 original size:20 final size:20
Alignment explanation
Indices: 276828--276934 Score: 139
Period size: 19 Copynumber: 5.5 Consensus size: 20
276818 GATGAGAAGG
276828 GTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCTCAACC
*
276848 TTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCTCAACC
* *
276868 TTCGGGAGCAAAGCT-AAAC
1 GTCGGGAGCAAAGCTCAACC
*
276887 GTCGCGAGCAAAGCTCAA-C
1 GTCGGGAGCAAAGCTCAACC
*
276906 GTCGCGAGCAAAGCTCAA-C
1 GTCGGGAGCAAAGCTCAACC
*
276925 GTCGCGAGCA
1 GTCGGGAGCA
276935 CTCTTGCGAG
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
19 46 0.56
20 36 0.44
ACGTcount: A:0.31, C:0.29, G:0.28, T:0.12
Consensus pattern (20 bp):
GTCGGGAGCAAAGCTCAACC
Left flanking sequence: Indices 276328 -- 276827
CGGAAGGGATCTCGGTCGATCTGCCCCTCATTCAGTCGCTCCGCAGTATAAGCAGTTTTTGACGT
ATCTGACCGATCTAATCTATCTAATCTAATAAGGTACCGGTTGGGTCGGGTCGCGGTTCGGTTCC
TTCGCTAGCGCTTGGAAGCAAGCTACCCTCCTGTAGGCTACTAAGGTCGATCAGTCTCTCATCAT
CTATCGTCGCATCACGCCCTGCCGGAGCGCCATGCAGAGCAGCAATGGCACGTCACTACCATGCG
GACCGGACAGAAACCACACAAGGCAAGGCGGCTATATGATGCCGGTTCCGTATGTGTGCTCGGAT
GAAGGTTGCTACCGTCCCCTCAACGCGCCTGGAAAGGAAAGAACATCTTTAGAGCCCTCCGTTTG
AGTTTTGAGCTTAGAATAATTGACACCTGCGCCTGAAGAAGGTCAAGACTCCACAGGTTCCATGG
GGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGG
Right flanking sequence: Indices 276935 -- 277434
CTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGC
GCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGAT
AGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTGTG
CAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGT
GCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGA
GAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAG
Found at i:276926 original size:38 final size:39
Alignment explanation
Indices: 276828--276934 Score: 153
Period size: 38 Copynumber: 2.7 Consensus size: 39
276818 GATGAGAAGG
* *
276828 GTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCTCAA-CGTCGCGAGCAAAGCTCAACC
* *
276868 TTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAA-C
1 GTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACC
*
276906 GTCGCGAGCAAAGCTCAACGTCGCGAGCA
1 GTCGGGAGCAAAGCTCAACGTCGCGAGCA
276935 CTCTTGCGAG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 27 0.45
39 17 0.28
40 16 0.27
ACGTcount: A:0.31, C:0.29, G:0.28, T:0.12
Consensus pattern (39 bp):
GTCGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACC
Left flanking sequence: Indices 276328 -- 276827
CGGAAGGGATCTCGGTCGATCTGCCCCTCATTCAGTCGCTCCGCAGTATAAGCAGTTTTTGACGT
ATCTGACCGATCTAATCTATCTAATCTAATAAGGTACCGGTTGGGTCGGGTCGCGGTTCGGTTCC
TTCGCTAGCGCTTGGAAGCAAGCTACCCTCCTGTAGGCTACTAAGGTCGATCAGTCTCTCATCAT
CTATCGTCGCATCACGCCCTGCCGGAGCGCCATGCAGAGCAGCAATGGCACGTCACTACCATGCG
GACCGGACAGAAACCACACAAGGCAAGGCGGCTATATGATGCCGGTTCCGTATGTGTGCTCGGAT
GAAGGTTGCTACCGTCCCCTCAACGCGCCTGGAAAGGAAAGAACATCTTTAGAGCCCTCCGTTTG
AGTTTTGAGCTTAGAATAATTGACACCTGCGCCTGAAGAAGGTCAAGACTCCACAGGTTCCATGG
GGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGG
Right flanking sequence: Indices 276935 -- 277434
CTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGC
GCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGAT
AGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTGTG
CAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGT
GCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGA
GAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAG
Found at i:276983 original size:41 final size:39
Alignment explanation
Indices: 276937--277221 Score: 173
Period size: 43 Copynumber: 6.9 Consensus size: 39
276927 CGCGAGCACT
276937 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTT--CTTAATGCAAAGCATCGCGTGCTGA
276978 CTTGCGAGCG----CTTAATGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTTCTTAATGCAAAGCATCGCGTGCTGA
* * * ** * *
277013 CTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCT-TAATGCAAAGC-ATCGCGTGC--TGA
* * * ** * *
277056 CTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCT-TAATGCAAAGC-ATCGCGTGC--TGA
* * * ** * *
277099 CTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTCT-TAATGCAAAGC-ATCGCGTGC--TGA
*
277142 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTT--TCTTAATGCAAAGCATCGCGTGCTGA
*
277183 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCT
1 CTTGCGAGCGCTT--TCTTAATGCAAAGCATCGCGTGCT
277222 TTTAGTGAGA
Statistics
Matches: 219, Mismatches: 15, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
35 35 0.16
39 1 0.00
40 7 0.03
41 59 0.27
43 109 0.50
44 7 0.03
45 1 0.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (39 bp):
CTTGCGAGCGCTTTCTTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 276437 -- 276936
GTCGGGTCGCGGTTCGGTTCCTTCGCTAGCGCTTGGAAGCAAGCTACCCTCCTGTAGGCTACTAA
GGTCGATCAGTCTCTCATCATCTATCGTCGCATCACGCCCTGCCGGAGCGCCATGCAGAGCAGCA
ATGGCACGTCACTACCATGCGGACCGGACAGAAACCACACAAGGCAAGGCGGCTATATGATGCCG
GTTCCGTATGTGTGCTCGGATGAAGGTTGCTACCGTCCCCTCAACGCGCCTGGAAAGGAAAGAAC
ATCTTTAGAGCCCTCCGTTTGAGTTTTGAGCTTAGAATAATTGACACCTGCGCCTGAAGAAGGTC
AAGACTCCACAGGTTCCATGGGGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAG
GGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTAAACGTCGC
GAGCAAAGCTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACT
Right flanking sequence: Indices 277222 -- 277721
TTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCTCTCTTGCCTTATAGTGCGAG
TGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTT
GCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTG
CTTTGACTTGCGTGCGAGTGCTTTGACAGGAATGGAAGAATGAGAAAGGGGTTAGGTGAGAAGAC
CTAATGTCAACATTCAAGGATCCCGGGGGGACCGTATAGGCTTTCTACCAGTGCTCTATTCATAG
TCTCTATCTATCACTGACCGGTCTGGATCCTAGTAGTGTTGATGAAGGTAGGCTTGCATAGCACG
CAGTAGGCGTCGTAGCAAGAGTTGTAGGCTACACTCGCTGCTTTTCTGGGCGTAACAAGCTGGAT
ATGGAAAAGAGGAAAGATTCCCCTCTCTTTCACAACTCGGGCACC
Found at i:276999 original size:35 final size:37
Alignment explanation
Indices: 276953--277195 Score: 174
Period size: 43 Copynumber: 6.1 Consensus size: 37
276943 AGCGCTTTCA
276953 CTTAATGCAAAGCATCGC-GTGC-TGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCAGTGCTTGACTTGCGAGCG
276988 CTTAATGCAAAGCATCGC-GTGC-TGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCAGTGCTTGACTTGCGAGCG
**
277023 CTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGC-----AGTGC-TTGACTTGCGAGCG
**
277066 CTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGC-----AGTGC-TTGACTTGCGAGCG
**
277109 CTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTG
1 CTTAATGCAAAGCATCGC-----AGTGC-TTGACTTGCGA--GC--G
277156 AACTTAATGCAAAGCATCGC-GTGC-TGACTTGCGAGCG
1 --CTTAATGCAAAGCATCGCAGTGCTTGACTTGCGAGCG
277193 CTT
1 CTT
277196 GAACTTAATG
Statistics
Matches: 190, Mismatches: 4, Indels: 28
0.86 0.02 0.13
Matches are distributed among these distances:
35 54 0.28
37 1 0.01
39 2 0.01
41 14 0.07
43 100 0.53
45 2 0.01
47 1 0.01
49 16 0.08
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (37 bp):
CTTAATGCAAAGCATCGCAGTGCTTGACTTGCGAGCG
Left flanking sequence: Indices 276453 -- 276952
GTTCCTTCGCTAGCGCTTGGAAGCAAGCTACCCTCCTGTAGGCTACTAAGGTCGATCAGTCTCTC
ATCATCTATCGTCGCATCACGCCCTGCCGGAGCGCCATGCAGAGCAGCAATGGCACGTCACTACC
ATGCGGACCGGACAGAAACCACACAAGGCAAGGCGGCTATATGATGCCGGTTCCGTATGTGTGCT
CGGATGAAGGTTGCTACCGTCCCCTCAACGCGCCTGGAAAGGAAAGAACATCTTTAGAGCCCTCC
GTTTGAGTTTTGAGCTTAGAATAATTGACACCTGCGCCTGAAGAAGGTCAAGACTCCACAGGTTC
CATGGGGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGGGTCGGGAGCAAAGCT
CAACCTTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAACGT
CGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCA
Right flanking sequence: Indices 277196 -- 277695
GAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTGTGC
AAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTG
CTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGAG
AGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACAGGAATGGAAGA
ATGAGAAAGGGGTTAGGTGAGAAGACCTAATGTCAACATTCAAGGATCCCGGGGGGACCGTATAG
GCTTTCTACCAGTGCTCTATTCATAGTCTCTATCTATCACTGACCGGTCTGGATCCTAGTAGTGT
TGATGAAGGTAGGCTTGCATAGCACGCAGTAGGCGTCGTAGCAAGAGTTGTAGGCTACACTCGCT
GCTTTTCTGGGCGTAACAAGCTGGATATGGAAAAGAGGAAAGATT
Found at i:277065 original size:43 final size:43
Alignment explanation
Indices: 277010--277154 Score: 290
Period size: 43 Copynumber: 3.4 Consensus size: 43
277000 CATCGCGTGC
277010 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
277053 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
277096 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
277139 TGACTTGCGAGCGCTT
1 TGACTTGCGAGCGCTT
277155 GAACTTAATG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (43 bp):
TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
Left flanking sequence: Indices 276510 -- 277009
AGTCTCTCATCATCTATCGTCGCATCACGCCCTGCCGGAGCGCCATGCAGAGCAGCAATGGCACG
TCACTACCATGCGGACCGGACAGAAACCACACAAGGCAAGGCGGCTATATGATGCCGGTTCCGTA
TGTGTGCTCGGATGAAGGTTGCTACCGTCCCCTCAACGCGCCTGGAAAGGAAAGAACATCTTTAG
AGCCCTCCGTTTGAGTTTTGAGCTTAGAATAATTGACACCTGCGCCTGAAGAAGGTCAAGACTCC
ACAGGTTCCATGGGGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGGGTCGGGA
GCAAAGCTCAACCTTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAG
CTCAACGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGC
Right flanking sequence: Indices 277155 -- 277654
GAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
CTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCTCTCTTGCCTTATAGTGCG
AGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGAC
TTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAG
TGCTTTGACTTGCGTGCGAGTGCTTTGACAGGAATGGAAGAATGAGAAAGGGGTTAGGTGAGAAG
ACCTAATGTCAACATTCAAGGATCCCGGGGGGACCGTATAGGCTTTCTACCAGTGCTCTATTCAT
AGTCTCTATCTATCACTGACCGGTCTGGATCCTAGTAGTGTTGATGAAGGTAGGCTTGCATAGCA
CGCAGTAGGCGTCGTAGCAAGAGTTGTAGGCTACACTCGCTGCTT
Found at i:277306 original size:17 final size:18
Alignment explanation
Indices: 277284--277402 Score: 102
Period size: 17 Copynumber: 6.6 Consensus size: 18
277274 CTTATAGTGC
277284 GAGTGCTTTGAGTGAT-A
1 GAGTGCTTTGAGTGATGA
* * *
277301 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGA-GTG-ATGA
277321 GAGTGCTTTGAGTGA-GA
1 GAGTGCTTTGAGTGATGA
* * *
277338 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGA-GTG-ATGA
* *
277358 GAGTGCTTTGAGCG-TGC
1 GAGTGCTTTGAGTGATGA
277375 GAGTGCTTTGAGTGA-GA
1 GAGTGCTTTGAGTGATGA
277392 GAGTGCTTTGA
1 GAGTGCTTTGA
277403 CTTGCGTGCG
Statistics
Matches: 82, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
17 51 0.62
18 4 0.05
19 4 0.05
20 23 0.28
ACGTcount: A:0.17, C:0.13, G:0.38, T:0.33
Consensus pattern (18 bp):
GAGTGCTTTGAGTGATGA
Left flanking sequence: Indices 276784 -- 277283
GAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGGGTCGGGAGCAAAGCTCAACCT
TCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAACGTCGCGAG
CAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGAC
TTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGAT
AGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
CTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATC
GCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCT
TTGACTTGCGAGCGCTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 277403 -- 277902
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACAGGAATGGAAGAATGAGAAAGGGG
TTAGGTGAGAAGACCTAATGTCAACATTCAAGGATCCCGGGGGGACCGTATAGGCTTTCTACCAG
TGCTCTATTCATAGTCTCTATCTATCACTGACCGGTCTGGATCCTAGTAGTGTTGATGAAGGTAG
GCTTGCATAGCACGCAGTAGGCGTCGTAGCAAGAGTTGTAGGCTACACTCGCTGCTTTTCTGGGC
GTAACAAGCTGGATATGGAAAAGAGGAAAGATTCCCCTCTCTTTCACAACTCGGGCACCTGGTTG
GCCCCTTTCTCTTTCCGCCTCTCACCTGTAGCAGGTCTGCCATGAGCAACAAGCCACATTCCAGA
GTTGGCCCTCTGACATCCTATCGGCTTCCAGATCCTGTTCCATCGGAAAAAAGTCCCCAAGGGTC
CTAACGGAGAAGGGAAGGCCCCACACTGGGATGTCTTGATCCTGA
Found at i:277322 original size:37 final size:38
Alignment explanation
Indices: 277280--277442 Score: 194
Period size: 37 Copynumber: 4.4 Consensus size: 38
277270 TTGCCTTATA
277280 GTGCGAGTGCTTTGAGTGAT-AGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGAGTGATGAGAGTGCTTTGACTTGC
277317 GTGCGAGTGCTTTGAGTGA-GAGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGAGTGATGAGAGTGCTTTGACTTGC
* * *
277354 GTGCGAGTGCTTTGAGCG-TGCGAGTGCTTTGA---GT
1 GTGCGAGTGCTTTGAGTGATGAGAGTGCTTTGACTTGC
* * * * *
277388 GAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA-GTG-ATGAGAGTGCTTTGACTTGC
277428 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
277443 CAGGAATGGA
Statistics
Matches: 108, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
34 14 0.13
35 1 0.01
37 79 0.73
40 14 0.13
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (38 bp):
GTGCGAGTGCTTTGAGTGATGAGAGTGCTTTGACTTGC
Left flanking sequence: Indices 276780 -- 277279
TGGGGAGGGAAGGATGGATTTGATTTTTTGCCCAACTTGATGAGAAGGGTCGGGAGCAAAGCTCA
ACCTTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTAAACGTCGCGAGCAAAGCTCAACGTCG
CGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGC
TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCG
CGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCG
AGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAG
TGCTTTGACTTGCGAGCGCTTTGTGCAAAGCTCTCTTGCCTTATA
Right flanking sequence: Indices 277443 -- 277942
CAGGAATGGAAGAATGAGAAAGGGGTTAGGTGAGAAGACCTAATGTCAACATTCAAGGATCCCGG
GGGGACCGTATAGGCTTTCTACCAGTGCTCTATTCATAGTCTCTATCTATCACTGACCGGTCTGG
ATCCTAGTAGTGTTGATGAAGGTAGGCTTGCATAGCACGCAGTAGGCGTCGTAGCAAGAGTTGTA
GGCTACACTCGCTGCTTTTCTGGGCGTAACAAGCTGGATATGGAAAAGAGGAAAGATTCCCCTCT
CTTTCACAACTCGGGCACCTGGTTGGCCCCTTTCTCTTTCCGCCTCTCACCTGTAGCAGGTCTGC
CATGAGCAACAAGCCACATTCCAGAGTTGGCCCTCTGACATCCTATCGGCTTCCAGATCCTGTTC
CATCGGAAAAAAGTCCCCAAGGGTCCTAACGGAGAAGGGAAGGCCCCACACTGGGATGTCTTGAT
CCTGATCATCAGAGCATCCTATCGTCCACAAGGCGATCTTTCCTC
Done.