Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_060361
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 335042
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
File 1 of 3
Found at i:1289 original size:13 final size:13
Alignment explanation
Indices: 1271--1297 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1261 CAGTAGCACC
1271 AGGTAGTTTCTTT
1 AGGTAGTTTCTTT
1284 AGGTAGTTTCTTT
1 AGGTAGTTTCTTT
1297 A
1 A
1298 TATGTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (13 bp):
AGGTAGTTTCTTT
Left flanking sequence: Indices 771 -- 1270
AAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTTCAAATTGGAAACGAAATTTCAT
CGACCATCCCTGCCTTTACCCTGGAACGAGACCATAGGCAGAGGCGGGGCAGAGAGCGGAATGAA
ATGTAGCGAGAGAGACAGCAAGCTACGTATCATTTCCTCCCTGGCGTGGATTACTGAGGTCTTCC
CTGATTCTGGCTTGACCAAAACTCTCCGTATCGTTCCAGGGTCGATTCCATTGGGGTGCTCAAAA
AGCTAACACTGGGATAGAGCTCGTACCAAGAAGTCGAGCCTTGCCCAAGACCGACCTCTGCGGGA
CGTACATATATATGACCCGAAAGAAAAGTCCTCTGACACTTGAACTTGAACACGACCATAGCCCG
TACTGGATAGGCCAAAGAGGAGGCACTCAGTCAATAGGAACCAATCCAATTCGAACCGGATATTG
GAATATTGGAAAGACTATTAGTAGATGAACAGAATCAGTAGCACC
Right flanking sequence: Indices 1298 -- 1797
TATGTATTGCCAAAACTTGTTAGCGCTTTAGTTTTCAAATTACGATGCTTTAGTTGAAGTTCCCG
TATACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGAAAGC
GAACAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTCCCGT
AAGCCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAATAAC
CAGTGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAAGCCC
CGAAGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACCAGAA
AAGCCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATAGAAG
CCCTTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAA
Found at i:1829 original size:22 final size:22
Alignment explanation
Indices: 1801--1847 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
1791 ATATAAAAAG
* *
1801 AGAAATTTGAAAGGCAAGGAAT
1 AGAAATTGGAAAGGCAAGAAAT
1823 AGAAATTGGAAAGGCAAGAAAT
1 AGAAATTGGAAAGGCAAGAAAT
1845 AGA
1 AGA
1848 GTAGTTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.28, T:0.15
Consensus pattern (22 bp):
AGAAATTGGAAAGGCAAGAAAT
Left flanking sequence: Indices 1301 -- 1800
GTATTGCCAAAACTTGTTAGCGCTTTAGTTTTCAAATTACGATGCTTTAGTTGAAGTTCCCGTAT
ACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGAAAGCGAA
CAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTCCCGTAAG
CCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAATAACCAG
TGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAAGCCCCGA
AGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACCAGAAAAG
CCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATAGAAGCCC
TTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAAAAG
Right flanking sequence: Indices 1848 -- 2347
GTAGTTGATTCATTCAATAGACTCCGTTGTATGTCAAATGATTCAATAGACTCCGTTGTATGTCA
AACTCACCCAATCTTTCAAGGGGTTGCCGAAAGAAAGTTCGAAAGCGCATAACGTGCGTTTCAGT
TCAAGTTCAAGTCAGGGGAAAGGAATGTCAAGCCTAGTATAAGACCGCTCTCAAGCAAGCCAGGA
TCAGACCACGGCCACAGGGTCAAGCCAAGCTAGTAGTCAGCCGTGGGTTAGCCCGTTGTCAAGTT
CCTTCTTCCCCAATTTCAGGGCTCTGAGACTTTCTCTGATCCTTCTGACTCCGTCCTTCTCTTTT
CACGTGCCATACGATACCTATCCCTCTTTAGCAAGGGCGCGAGTGACGCATGGTGACAAGGCCCT
GTGTCAATCTTCAGGGCTGAAGGTCGCGTATTGTAGGGAATCGGAAAGGAAGCGAGGGATAAGTC
AGTAGGTACGGGCGAAGGTCTAGTACCTGTTTCAAGCTCGCAAGG
Found at i:1901 original size:29 final size:29
Alignment explanation
Indices: 1859--1914 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
1849 TAGTTGATTC
1859 ATTCAATAGACTCCGTTGTATGTCAAATG
1 ATTCAATAGACTCCGTTGTATGTCAAATG
1888 ATTCAATAGACTCCGTTGTATGTCAAA
1 ATTCAATAGACTCCGTTGTATGTCAAA
1915 CTCACCCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (29 bp):
ATTCAATAGACTCCGTTGTATGTCAAATG
Left flanking sequence: Indices 1359 -- 1858
CCCGTATACAGTCGAATTTCTTCGCTACAGTATCATAGGCCTAGAATAGAATCCGGTCTAGTTGA
AAGCGAACAAGTTTTGACGCCTCAAAAGTCCCGCCCTAACGCTAGCCAGCGCAAATGTCCACGTC
CCGTAAGCCCGATAGAAAGAAAGACAAATCCTGCTTTCCCGTTCATTAAGTGTGAATAGTTCCAA
TAACCAGTGCCAAAGAGCGTCCCCAAAAGCGAGTCTCCTTTTCGAGTGCCCCAGCGCAGCGCCAA
GCCCCGAAGCCCATCAGTTTCGTTTTGGGCAGGATTCAGCGAGAGAAAGAGTGACATTCGAAACC
AGAAAAGCCAGTTTTTCGAGAGTAGCAAAGTGACGAGTAAAGACAGAATGTAAGTGAAGAGAATA
GAAGCCCTTAGCCTTTTCTATATCTTTCTATTAATATTGGTTATATAAAAAGAGAAATTTGAAAG
GCAAGGAATAGAAATTGGAAAGGCAAGAAATAGAGTAGTTGATTC
Right flanking sequence: Indices 1915 -- 2414
CTCACCCAATCTTTCAAGGGGTTGCCGAAAGAAAGTTCGAAAGCGCATAACGTGCGTTTCAGTTC
AAGTTCAAGTCAGGGGAAAGGAATGTCAAGCCTAGTATAAGACCGCTCTCAAGCAAGCCAGGATC
AGACCACGGCCACAGGGTCAAGCCAAGCTAGTAGTCAGCCGTGGGTTAGCCCGTTGTCAAGTTCC
TTCTTCCCCAATTTCAGGGCTCTGAGACTTTCTCTGATCCTTCTGACTCCGTCCTTCTCTTTTCA
CGTGCCATACGATACCTATCCCTCTTTAGCAAGGGCGCGAGTGACGCATGGTGACAAGGCCCTGT
GTCAATCTTCAGGGCTGAAGGTCGCGTATTGTAGGGAATCGGAAAGGAAGCGAGGGATAAGTCAG
TAGGTACGGGCGAAGGTCTAGTACCTGTTTCAAGCTCGCAAGGTATGACATCGATCCCTTAAATC
AAGCTATCGACTATCGAAAGATAGACTCCGTGCCTGTTTAGAGTA
Found at i:7194 original size:20 final size:18
Alignment explanation
Indices: 7171--7220 Score: 66
Period size: 17 Copynumber: 2.7 Consensus size: 18
7161 CAAAGCGTGA
*
7171 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCAC-C-ACTC
7191 AAAGCACTCGCA-CACTC
1 AAAGCACTCGCACCACTC
7208 AAAGCACTCGCAC
1 AAAGCACTCGCAC
7221 TATAAGGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 15 0.54
18 1 0.04
20 12 0.43
ACGTcount: A:0.36, C:0.38, G:0.16, T:0.10
Consensus pattern (18 bp):
AAAGCACTCGCACCACTC
Left flanking sequence: Indices 6671 -- 7170
TTCTCTTCTCTTATTCACTTGTCCGTCCTCAGCATGCTTAGGCGTGGGCAGTGACGCGGCTGTAG
CTGTTCAGGGGGGAGGAGCAGAGAAGTACCAGCCAGTAGTCAGGGACTGGGTCTGGTTAGAAGGT
GTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAGGCTGCCAACTCATCTTTTTGGCTGGGCGCA
AGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTACATAGCCGCAGGTTGTCTAGTATGGCTGCAT
CTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCTCATTGACAGGGCCGGAATT
GGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCTTTGGTATTTTTGGATGACT
TTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCAGAAACCAAACTCGCAAAGC
GAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 7221 -- 7720
TATAAGGCAAGAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGC
ACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCA
AGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTG
ACGTGACCTGACGTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGA
GCCTTCGGAACTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGAT
GGATTTTTTGAAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAG
GTTGATAATTGAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGG
GCTGCCGCTTGCAAAGCTTACATGAAAGATAGCTTCTTCAAGATA
Found at i:7307 original size:58 final size:57
Alignment explanation
Indices: 7206--7316 Score: 136
Period size: 56 Copynumber: 1.9 Consensus size: 57
7196 ACTCGCACAC
*
7206 TCAAAGCACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAA-CGCTCTAAG
1 TCAAAGCACTCGCACTATAAAGCAAGAGAGCTTTGCACAAAGTGAAAGCGCTCTAAG
* * **
7262 TCAAAGCACTCGCAC-ACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTC
1 TCAAAGCACTCGCACTA-T-AAAGCAAGAGA-GCTTTGCACAAAGTGAAAGCGCTC
7317 GCAAGTCAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 1 0.02
56 16 0.35
57 8 0.17
58 16 0.35
59 5 0.11
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (57 bp):
TCAAAGCACTCGCACTATAAAGCAAGAGAGCTTTGCACAAAGTGAAAGCGCTCTAAG
Left flanking sequence: Indices 6706 -- 7205
GCTTAGGCGTGGGCAGTGACGCGGCTGTAGCTGTTCAGGGGGGAGGAGCAGAGAAGTACCAGCCA
GTAGTCAGGGACTGGGTCTGGTTAGAAGGTGTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAG
GCTGCCAACTCATCTTTTTGGCTGGGCGCAAGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTAC
ATAGCCGCAGGTTGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGG
TGTCCAAGGCTCATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCA
GCTTTGACTCTTTGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATT
TGATCAATTCAGAAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCG
CAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACAC
Right flanking sequence: Indices 7317 -- 7816
GCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCAC
TTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTGACGTGACCTGACGTGACGTGACGTGACGTTC
TGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAAGG
CCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTGGT
CACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTACT
AAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGATA
GCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGACTAGCTAGCTACCTAACAAT
AGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATC
Found at i:7339 original size:41 final size:41
Alignment explanation
Indices: 7283--7362 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
7273 GCACACTAAA
7283 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
1 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
**
7324 AGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
1 AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
7363 AGTGCTCGCG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (41 bp):
AGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
Left flanking sequence: Indices 6783 -- 7282
TGGGTCTGGTTAGAAGGTGTTCCTGTGACAGCAGATGGCGGTCTCTGTTTCAGGCTGCCAACTCA
TCTTTTTGGCTGGGCGCAAGTGCTACTATTGGCTGGGTTTGGTTTGCAGTTACATAGCCGCAGGT
TGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCTC
ATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCTT
TGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCAG
AAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAA
AGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGCT
TTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAA
Right flanking sequence: Indices 7363 -- 7862
AGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCTCGTGACGTGACCTGAC
GTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACT
GGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAA
GAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGA
GAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGC
AAAGCTTACATGAAAGATAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGAC
TAGCTAGCTACCTAACAATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATCC
AACATGCCTCAATAAAAAAGCTTCACTTCCAACTATCCTGTTCAA
Found at i:7422 original size:5 final size:5
Alignment explanation
Indices: 7412--7444 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7402 GAGCTTTGCT
*
7412 CGTGA CGTGA CCTGA CGTGA CGTGA CGTGA CGT
1 CGTGA CGTGA CGTGA CGTGA CGTGA CGTGA CGT
7445 TCTGTCAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (5 bp):
CGTGA
Left flanking sequence: Indices 6912 -- 7411
TTGTCTAGTATGGCTGCATCTATTGTGAAGATCATAAGTGGTCACTGGTTTGGGTGTCCAAGGCT
CATTGACAGGGCCGGAATTGGAGTCATCTTCTCTCGCTGTTGAGGACACGGGCAGCTTTGACTCT
TTGGTATTTTTGGATGACTTTTTGTAAGAAGGTGCTTAATGTTTACTTTCTATTTGATCAATTCA
GAAACCAAACTCGCAAAGCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAA
AAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGC
TTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGCACGCGATGCTTTGCAT
TAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTG
CTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTTTGCT
Right flanking sequence: Indices 7445 -- 7944
TCTGTCAAGCAAGTCCTGCTCCACGTCGACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAA
GGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTG
GTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTA
CTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGA
TAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTGACTAGCTAGCTACCTAACA
ATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAA
AAGCTTCACTTCCAACTATCCTGTTCAAACTATCTTCTCCTTGCTCCCTTCCAACAAGTCAGTCT
TTTTTCATTCAGGGAATTTCTTTATCTATCTCTGGCTTTTATGGA
Found at i:7773 original size:26 final size:26
Alignment explanation
Indices: 7713--7787 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
7703 GATAGCTTCT
* * *
7713 TCAAGATAGCTGACTAGCTACCTAAT
1 TCAAAATAGCTGACTAGCTAGCTAAC
* *
7739 TCAAGATAGCTGACTAGCTAGCTACC
1 TCAAAATAGCTGACTAGCTAGCTAAC
*
7765 T-AACAATAGCCTGACTCGCTAGC
1 TCAA-AATAG-CTGACTAGCTAGC
7788 ATTATGGAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 28 0.67
27 12 0.29
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (26 bp):
TCAAAATAGCTGACTAGCTAGCTAAC
Left flanking sequence: Indices 7213 -- 7712
ACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACA
CTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCAT
TAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTTCACTTTGCTCCCTCCCTTCTGTTGAGCTT
TGCTCGTGACGTGACCTGACGTGACGTGACGTGACGTTCTGTCAAGCAAGTCCTGCTCCACGTCG
ACTTGAGAGCCTTCGGAACTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCC
GCCTTGATGGATTTTTTGAAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGC
GCGCAGAGGTTGATAATTGAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGT
TAGTCCGGGCTGCCGCTTGCAAAGCTTACATGAAAGATAGCTTCT
Right flanking sequence: Indices 7788 -- 8287
ATTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAAAAGCTTCACTTCCAACTA
TCCTGTTCAAACTATCTTCTCCTTGCTCCCTTCCAACAAGTCAGTCTTTTTTCATTCAGGGAATT
TCTTTATCTATCTCTGGCTTTTATGGAGGGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAA
AAAGCTTCACTTCAAACTATCTTGACTTCAAACTATCTTCCTGGCTGAAAACGTCAAAAGGACTT
GAGCATTCGCACTTGGGTTGGTTCATTTTCTATACGTTCACATAAGTGAATAGAAAGTGAGTGAG
CTAATATAATAAGAAAGATCTCATCAAAGAGATGTGAAGGAGTACGCCCGGTTCACCAGGTTCTA
CCTTTAGCAGGCCCAATCCACCTAAAAAGAAGAGTTTGATCCTGGCTCAGAACGAACGCTAGCTA
TATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGG
Found at i:8012 original size:16 final size:16
Alignment explanation
Indices: 7991--8021 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7981 AAAAAGCTTC
7991 ACTTCAAACTATCTTG
1 ACTTCAAACTATCTTG
8007 ACTTCAAACTATCTT
1 ACTTCAAACTATCTT
8022 CCTGGCTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
ACTTCAAACTATCTTG
Left flanking sequence: Indices 7491 -- 7990
CTGGAACTTGACTTAACAAGGCCTTCGGAACTGGACTCCACAGCTCCGCCTTGATGGATTTTTTG
AAGAAAAGGAAAGCAATTGGTCACGTCGATGAAATTGAGGTCAAGGCGCGCAGAGGTTGATAATT
GAGAAATGAGAAGAGACTACTAAAGGAAGGATCGATGCTTTCTTAGTTAGTCCGGGCTGCCGCTT
GCAAAGCTTACATGAAAGATAGCTTCTTCAAGATAGCTGACTAGCTACCTAATTCAAGATAGCTG
ACTAGCTAGCTACCTAACAATAGCCTGACTCGCTAGCATTATGGAGGGAATCCTTTTTTCTCAAT
CCAACATGCCTCAATAAAAAAGCTTCACTTCCAACTATCCTGTTCAAACTATCTTCTCCTTGCTC
CCTTCCAACAAGTCAGTCTTTTTTCATTCAGGGAATTTCTTTATCTATCTCTGGCTTTTATGGAG
GGAATCCTTTTTTCTCAATCCAACATGCCTCAATAAAAAAGCTTC
Right flanking sequence: Indices 8022 -- 8521
CCTGGCTGAAAACGTCAAAAGGACTTGAGCATTCGCACTTGGGTTGGTTCATTTTCTATACGTTC
ACATAAGTGAATAGAAAGTGAGTGAGCTAATATAATAAGAAAGATCTCATCAAAGAGATGTGAAG
GAGTACGCCCGGTTCACCAGGTTCTACCTTTAGCAGGCCCAATCCACCTAAAAAGAAGAGTTTGA
TCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGA
GCTGGGCAGAAGGAAAAGAGGCTCCTAGCTTGATCAAGGTAGCTTGTCTCGCCCGTACTGTGGAG
GGAACGGCAATTTCCCTCCACAGGAGGTGGGAACAGTTGAGAACAAAGTGGCGAACGGGTGCGTA
ACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAATCAAGCTAAAAAGCGCTGTTTGAT
GAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAA
Found at i:13319 original size:35 final size:35
Alignment explanation
Indices: 13268--13356 Score: 160
Period size: 35 Copynumber: 2.5 Consensus size: 35
13258 AGCGCTTGAA
13268 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
**
13303 CTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCG
1 CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
13338 CTTAATGCAAAGCATCGCG
1 CTTAATGCAAAGCATCGCG
13357 ATAGAGTGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (35 bp):
CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCG
Left flanking sequence: Indices 12768 -- 13267
CAACTCCTCGGGTGGGGAAAGAAGCCTATCTGATCCCGAAACCTGAGATACTGGAGGACTGATTC
GAGTGGATCCTGTTGCCAGAAAGTGCTCTTTCCTAGTCGGGAAAAGAGGGCGCTAAGCATGAAAG
GGGTACTTAATCTATAGAAAACCAAACCTATCACATGCTTTTGACCCGGTAACTAACTCGTTATA
GGCAGTAACTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAAGAATTGAG
GGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTAT
TCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCA
ACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGT
CGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAA
Right flanking sequence: Indices 13357 -- 13856
ATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
TGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCT
TTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTG
CGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAG
TGCTTTGATCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACA
GAAGCGTGCTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAA
CAAGGTGGAATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAG
CGAAAGGCCTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGG
Found at i:13380 original size:43 final size:46
Alignment explanation
Indices: 13325--13434 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 46
13315 CATCGCGTGC
13325 TGACTTGCGAGCG-CTTAATGCAAAGCATCGCG-ATA-GAGTGCTT
1 TGACTTGCGAGCGACTTAATGCAAAGCATCGCGTATATGAGTGCTT
13368 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTT
1 TGACTTGCGA--GC--G-ACTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
13422 TGACTTGCGAGCG
1 TGACTTGCGAGCG
13435 TTTCACTTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
43 10 0.18
45 2 0.04
47 1 0.02
49 19 0.34
50 4 0.07
52 2 0.04
54 18 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (46 bp):
TGACTTGCGAGCGACTTAATGCAAAGCATCGCGTATATGAGTGCTT
Left flanking sequence: Indices 12825 -- 13324
ACTGATTCGAGTGGATCCTGTTGCCAGAAAGTGCTCTTTCCTAGTCGGGAAAAGAGGGCGCTAAG
CATGAAAGGGGTACTTAATCTATAGAAAACCAAACCTATCACATGCTTTTGACCCGGTAACTAAC
TCGTTATAGGCAGTAACTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAA
GAATTGAGGGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTT
TTGTCTATTCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGAC
GAAATTCAACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTC
GGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGC
Right flanking sequence: Indices 13435 -- 13934
TTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATAT
TGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTT
TGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGATCAAT
GAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTGCTTTA
GGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGGAATCC
AAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGCCTACA
CCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCAGTCCC
CAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCT
Found at i:13558 original size:20 final size:20
Alignment explanation
Indices: 13533--13624 Score: 154
Period size: 20 Copynumber: 4.8 Consensus size: 20
13523 TGCTTTGAGT
13533 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
*
13553 GTGCGAGTGCTTTGA---GT
1 GTGCGAGTGCTTTGACTTGC
13570 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
13590 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGC
13610 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
13625 TCAATGAAGA
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
20 51 0.76
ACGTcount: A:0.11, C:0.17, G:0.37, T:0.35
Consensus pattern (20 bp):
GTGCGAGTGCTTTGACTTGC
Left flanking sequence: Indices 13033 -- 13532
TAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTATTCTCT
GGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCAACCTT
CGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGTCGCGA
GCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGA
CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGA
TAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTT
GACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTT
TGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGT
Right flanking sequence: Indices 13625 -- 14124
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:13570 original size:37 final size:37
Alignment explanation
Indices: 13520--13624 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
13510 TTGAGCGATA
13520 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
13557 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
*
13594 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGA---GTGTGCGAGTGCTTTGA
13625 TCAATGAAGA
Statistics
Matches: 64, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
37 48 0.75
40 16 0.25
ACGTcount: A:0.11, C:0.16, G:0.37, T:0.35
Consensus pattern (37 bp):
GAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGC
Left flanking sequence: Indices 13020 -- 13519
GAATTGAGGGAGTTAGCACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTT
TTGTCTATTCTCTGGAAACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGAC
GAAATTCAACCTTCGATAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTC
GGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATG
CAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATA
TTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTG
CGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATA
Right flanking sequence: Indices 13625 -- 14124
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:13594 original size:57 final size:57
Alignment explanation
Indices: 13471--13624 Score: 190
Period size: 57 Copynumber: 2.7 Consensus size: 57
13461 GCAAAGCTCT
* **
13471 CTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGA-CTTG--CGTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
* * *
13531 ---GTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG-TGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGAT-AGAGTGCTTTGA
13585 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
13625 TCAATGAAGA
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
53 1 0.01
54 27 0.33
56 3 0.04
57 52 0.63
ACGTcount: A:0.13, C:0.16, G:0.36, T:0.34
Consensus pattern (57 bp):
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 12971 -- 13470
CTGGGAGAAGGAAGGGTAGGTTTTTGACATCTATCGATATTCTATGGAAGAATTGAGGGAGTTAG
CACTTTCACTTGATAGCTCTTCACATCAAAAGGTTTTGCTATTAGCTTTTTGTCTATTCTCTGGA
AACCTATCTCTTCCTTGATCGCCCTCCCCTTTACGTGACTTAATAGGACGAAATTCAACCTTCGA
TAGACGGCCCCAATTTGATCATCAATGTATCCAACTATTCGGAAGGGTCGGGAGGGTCGCGAGCA
AAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTT
GCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAG
AGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGAC
TTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCT
Right flanking sequence: Indices 13625 -- 14124
TCAATGAAGATTCGTCACTCCTGGTATGGTAGCTCAGGAGTAGGAAAAGGTCTTACAGAAGCGTG
CTTTAGGAAGTGTTCGAAAGACGACCTCAACACAAGGAGAATGGATGACGATGAGAACAAGGTGG
AATCCAAACGGAGGGAATAGAGGCCTCAAGCAAGTCCCGAAAGAAGATAGCCCAAAGCGAAAGGC
CTACACCCAGAGCCAAGTAGACAGATAGCGTTGCAGGGACCAATCCACCTAAGGGGAACCCCTCA
GTCCCCAAGCCGGTCCAAGCGGAGCTCGGTGATTATACGTATGGATTGCTCCTTCCACGGTCCAG
CGAGTGTATTTTGCATTTGTTTCATTCTCAATATGAAATGACGAACTCTGTTGCGACTATTTTCC
AGAGAATAGACAAAAAGCTAATAGCAAAACCTTTTGATGTGAAGAGCTATCAAGTGAAAGTGCTA
ACTCCCTAAATTATTCCATAGAATATCGATAGATGTCAAAAAAAG
Found at i:15913 original size:49 final size:47
Alignment explanation
Indices: 15839--16013 Score: 265
Period size: 49 Copynumber: 3.8 Consensus size: 47
15829 GCAAAGCTAT
15839 CTTGCGAGCGCTT-AACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-T-GAGTGCTTTGA
15887 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC----GTGC--TGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGTGCTTTGA
15928 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT--GAGTGCTTTGA
15977 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
16014 CTTTTAGTGA
Statistics
Matches: 118, Mismatches: 0, Indels: 19
0.86 0.00 0.14
Matches are distributed among these distances:
41 37 0.31
43 4 0.03
47 5 0.04
48 13 0.11
49 59 0.50
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (47 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGAGTGCTTTGA
Left flanking sequence: Indices 15339 -- 15838
ATGGGGGCTTGGTAGGGAAGAGCTAATGGAAATAACTAAGCGTTGACCGTGCGCAACCCCTCTTC
AAGCGATTTCAGCACTGAAAGCAAAAAAGAGAGAGAAAGGTTATCGAGATTATCAATCGTTGAAA
GTGTGCGGGAAGCTCGGGAAACAAGACCCGTCCCCCGAAGGGAGCTTCGGAAGCTGGGGAGGCAG
TGGGTTCGAAGAGAGTGTGTTAAGCACGCTGCTCCGTGAATAGTTTCGTACATTCCCTCGGGTGG
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 16014 -- 16513
CTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAG
TGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGCGCGAGTGCTT
TGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTG
CGTGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCT
TCGGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATC
CCTTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTT
ATAGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATAC
AACAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAAC
Found at i:15991 original size:90 final size:89
Alignment explanation
Indices: 15839--16015 Score: 320
Period size: 90 Copynumber: 2.0 Consensus size: 89
15829 GCAAAGCTAT
15839 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
1 CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
15904 TTAATGCAAAGCATCGCGTGCTGA
66 TTAATGCAAAGCATCGCGTGCTGA
*
15928 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTGA
1 CTTGCGAGCGCTT-AACTTAATGCAAAGCATCGCGAT-AGAGTGCTTTGACTTGCGAGCGCTTGA
15992 ACTTAATGCAAAGCATCGCGTGCT
64 ACTTAATGCAAAGCATCGCGTGCT
16016 TTTAGTGAGA
Statistics
Matches: 85, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
89 14 0.16
90 71 0.84
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (89 bp):
CTTGCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAAC
TTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 15339 -- 15838
ATGGGGGCTTGGTAGGGAAGAGCTAATGGAAATAACTAAGCGTTGACCGTGCGCAACCCCTCTTC
AAGCGATTTCAGCACTGAAAGCAAAAAAGAGAGAGAAAGGTTATCGAGATTATCAATCGTTGAAA
GTGTGCGGGAAGCTCGGGAAACAAGACCCGTCCCCCGAAGGGAGCTTCGGAAGCTGGGGAGGCAG
TGGGTTCGAAGAGAGTGTGTTAAGCACGCTGCTCCGTGAATAGTTTCGTACATTCCCTCGGGTGG
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 16016 -- 16515
TTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTG
CGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGCGCGAGTGCTTTG
ACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCG
TGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTC
GGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCC
TTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTAT
AGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAA
CAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAACCA
Found at i:16104 original size:17 final size:17
Alignment explanation
Indices: 16082--16146 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 17
16072 CTTATAGTGC
16082 GAGTGCTTTGAGTGATA
1 GAGTGCTTTGAGTGATA
*
16099 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGA---GTGATA
***
16119 GAGTGCTTTGAGTGCGC
1 GAGTGCTTTGAGTGATA
16136 GAGTGCTTTGA
1 GAGTGCTTTGA
16147 CTTGCGTGCG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 24 0.60
20 16 0.40
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.34
Consensus pattern (17 bp):
GAGTGCTTTGAGTGATA
Left flanking sequence: Indices 15582 -- 16081
TACATTCCCTCGGGTGGCTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCT
CAGTTCTAAACGAGTGACCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGC
AAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTG
CAAAGCCCCCAACTTTCTGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTT
GCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTA
ATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGC
TTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGA
CTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 16147 -- 16646
CTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCGT
GCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTCG
GTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCCT
TCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTATA
GATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAAC
AGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAACCAAACTGGTGAACGCGAGCGGTT
GGACACCGCGAAGCTTGTCGTTTGAGACATTCTTCCGTAAGTTCTGGAGGACCCTTGAAAGAAGC
CCGTCCCTCGCCTTTCGCCTATCCAGTGCGGGGGACGTCTTGATA
Found at i:16120 original size:20 final size:19
Alignment explanation
Indices: 16099--16188 Score: 121
Period size: 20 Copynumber: 4.7 Consensus size: 19
16089 TTGAGTGATA
*
16099 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGACTTGCG-TC
*
16119 GAGTGCTTTGA-GTGCG-C
1 GAGTGCTTTGACTTGCGTC
16136 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGT-C
16156 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGT-C
16176 GAGTGCTTTGACT
1 GAGTGCTTTGACT
16189 CTTCCTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.17
18 4 0.06
19 4 0.06
20 45 0.70
ACGTcount: A:0.13, C:0.18, G:0.34, T:0.34
Consensus pattern (19 bp):
GAGTGCTTTGACTTGCGTC
Left flanking sequence: Indices 15599 -- 16098
CTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCTCAGTTCTAAACGAGTGA
CCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGCAAAGCCCCCACTCTTTG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTGCAAAGCCCCCAACTTTC
TGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTTAACTTAA
TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
CTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTT
TGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATA
Right flanking sequence: Indices 16189 -- 16688
CTTCCTTATATTTGCGAGTGCGTGCTAGGTTCCACCTTCAGTTTCGAGAAACCAGGGCCCGAGTG
GAACTGAACGCGCTCTATCTTCGGTAGCCCGGGAGGACGACGTCCTTCCACCATGCGATTAGGTT
GTCCAAGCCCTTCCTTTATCCCTTCATGCCTGAAACATGCCCTTCTCACCAAAACCTTCCATGCA
TGTCAGTCTAATCTAACCTTATAGATTGATCACAGTAACCAACAACAGTCTGAGGCATATCTTAG
TCCGTCACTAACGAGCATACAACAGATTAGTGGTCGGACTCCTCTAACTTAGGAAGTGGCATAAC
CAAACTGGTGAACGCGAGCGGTTGGACACCGCGAAGCTTGTCGTTTGAGACATTCTTCCGTAAGT
TCTGGAGGACCCTTGAAAGAAGCCCGTCCCTCGCCTTTCGCCTATCCAGTGCGGGGGACGTCTTG
ATAGACGGATGGATCCTTCTTTCATTACCATCCTGACCGTCTCCC
Found at i:16123 original size:37 final size:37
Alignment explanation
Indices: 16082--16166 Score: 118
Period size: 37 Copynumber: 2.3 Consensus size: 37
16072 CTTATAGTGC
*
16082 GAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGAT-A
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCG-TGA
* * *
16119 GAGTGCTTTGAGTGCGCGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGA
16156 GAGTGCTTTGA
1 GAGTGCTTTGA
16167 CTTGCGTGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.16, C:0.14, G:0.35, T:0.34
Consensus pattern (37 bp):
GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGA
Left flanking sequence: Indices 15582 -- 16081
TACATTCCCTCGGGTGGCTTCCAGCGCCCAAGACGCTTAGTCAAGCGCGTGCTATACTGGCAGCT
CAGTTCTAAACGAGTGACCCTCCTGCTTTTGGTTGTTCTGTGCTACGTCAGGTCACGTCACGAGC
AAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCCCTTGCGAGTGTTATTGTG
CAAAGCCCCCAACTTTCTGTCGGGAGCAAAGCCCCAAACGGAAGGGTCGGGAGCAAAGCTATCTT
GCGAGCGCTTAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTA
ATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGC
TTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGA
CTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGC
Right flanking sequence: Indices 16167 -- 16666
CTTGCGTGCGAGTGCTTTGACTCTTCCTTATATTTGCGAGTGCGTGCTAGGTTCCACCTTCAGTT
TCGAGAAACCAGGGCCCGAGTGGAACTGAACGCGCTCTATCTTCGGTAGCCCGGGAGGACGACGT
CCTTCCACCATGCGATTAGGTTGTCCAAGCCCTTCCTTTATCCCTTCATGCCTGAAACATGCCCT
TCTCACCAAAACCTTCCATGCATGTCAGTCTAATCTAACCTTATAGATTGATCACAGTAACCAAC
AACAGTCTGAGGCATATCTTAGTCCGTCACTAACGAGCATACAACAGATTAGTGGTCGGACTCCT
CTAACTTAGGAAGTGGCATAACCAAACTGGTGAACGCGAGCGGTTGGACACCGCGAAGCTTGTCG
TTTGAGACATTCTTCCGTAAGTTCTGGAGGACCCTTGAAAGAAGCCCGTCCCTCGCCTTTCGCCT
ATCCAGTGCGGGGGACGTCTTGATAGACGGATGGATCCTTCTTTC
Found at i:18259 original size:19 final size:19
Alignment explanation
Indices: 18235--18273 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
18225 TGATGGAAGG
18235 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
18254 GTCGCGAGCAAAGCTCAAC
1 GTCGCGAGCAAAGCTCAAC
18273 G
1 G
18274 AGCAAAGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.28, T:0.10
Consensus pattern (19 bp):
GTCGCGAGCAAAGCTCAAC
Left flanking sequence: Indices 17735 -- 18234
AGTGCTTTTCTCACTGCCCGCCCGGCCCGTATCTTCAATCTTAAGTAAAGTTCAGTCAAGTCAAT
GAACAGCCCAACCTCTTTGTTTGAAGGCCAGGAAGCTTCCACTTGTGGAAGGCCTTGGCCTCCCC
CTCATTCCGAAACACAACCAAACGACTTGCAACTCTCTCCACTTCTCTTTCGTCGTCGTTCTAAG
CGGACTTGTTGGCTATAGCCAAGCCACTTCTCCTTTTTCGGCGTATAGCGCGGACTAAGCGGACT
TGTTGTCTATAGCCAATTCTCTTTCTTTGATAGCGGTCATAGGGGGGTTCAGAAAGGATCTGATC
TACGATAGAGACGGAAACCTGTGCGGGGGTAGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGG
ATTGTGAATCCACCACGCGCGGGTTCAATCCCCGTCGTTCGCCCATCAATAAATGGACCATTTGC
TTGCGCCGGAGACAGAAACGTCACGTCACGTCAATTGATGGAAGG
Right flanking sequence: Indices 18274 -- 18773
AGCAAAGTGAAACGGAAGGGTCGCGAGCAAAGCTAAACGGAAGGGTCGCGAGCAAAGCTCAACGT
CGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCG
TGCGAGTGCTTTGTACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCCTTATATT
TCTTGCGAGTGCGTGCTTTGAGAGTGACGGATCAAAGGTTGCGGGAACGAGACGCTTTCGTTGTT
TATGGATGAAGAAGTCAGCCTCACGACTGGAAGGTGTAATGTAAGTGAAGAGAATAGAAGCCCTT
AGCCTTTTCTATATCTTTCTATTAAGCTGACTTGGTTGCTTGCTTGAGTAGTGTCATTTCCAAAG
GTTTGAACCGACGGTTCGCAACGGACCGGCCTGCGGATTCACTCTCTTAAGGACTGGAGCCTAGC
ACAAAGCCTAGCGTAGGGCATGGAGTGACGACTCTTCTTCTATGG
Found at i:18311 original size:25 final size:25
Alignment explanation
Indices: 18272--18337 Score: 107
Period size: 25 Copynumber: 2.6 Consensus size: 25
18262 CAAAGCTCAA
18272 CGAGCAAAG-TGAAACGGAAGGGTCG
1 CGAGCAAAGCT-AAACGGAAGGGTCG
18297 CGAGCAAAGCTAAACGGAAGGGTCG
1 CGAGCAAAGCTAAACGGAAGGGTCG
*
18322 CGAGCAAAGCTCAACG
1 CGAGCAAAGCTAAACG
18338 TCGCGAGCAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.35, T:0.08
Consensus pattern (25 bp):
CGAGCAAAGCTAAACGGAAGGGTCG
Left flanking sequence: Indices 17772 -- 18271
ATCTTAAGTAAAGTTCAGTCAAGTCAATGAACAGCCCAACCTCTTTGTTTGAAGGCCAGGAAGCT
TCCACTTGTGGAAGGCCTTGGCCTCCCCCTCATTCCGAAACACAACCAAACGACTTGCAACTCTC
TCCACTTCTCTTTCGTCGTCGTTCTAAGCGGACTTGTTGGCTATAGCCAAGCCACTTCTCCTTTT
TCGGCGTATAGCGCGGACTAAGCGGACTTGTTGTCTATAGCCAATTCTCTTTCTTTGATAGCGGT
CATAGGGGGGTTCAGAAAGGATCTGATCTACGATAGAGACGGAAACCTGTGCGGGGGTAGGGGCG
GATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATCCACCACGCGCGGGTTCAATCCCCGTCG
TTCGCCCATCAATAAATGGACCATTTGCTTGCGCCGGAGACAGAAACGTCACGTCACGTCAATTG
ATGGAAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGCTCAA
Right flanking sequence: Indices 18338 -- 18837
TCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGC
GTGCGAGTGCTTTGTACGAGCAAAAGCCCCTTTGAGTGTGCGAGTGCTTTTTCGATTCCTTATAT
TTCTTGCGAGTGCGTGCTTTGAGAGTGACGGATCAAAGGTTGCGGGAACGAGACGCTTTCGTTGT
TTATGGATGAAGAAGTCAGCCTCACGACTGGAAGGTGTAATGTAAGTGAAGAGAATAGAAGCCCT
TAGCCTTTTCTATATCTTTCTATTAAGCTGACTTGGTTGCTTGCTTGAGTAGTGTCATTTCCAAA
GGTTTGAACCGACGGTTCGCAACGGACCGGCCTGCGGATTCACTCTCTTAAGGACTGGAGCCTAG
CACAAAGCCTAGCGTAGGGCATGGAGTGACGACTCTTCTTCTATGGAGCCTACAACTGCTACGCG
AGCCGTCAGTGACGACTCTTCTTCTATGGAGCCTACCACTTCTGC
Found at i:22976 original size:20 final size:20
Alignment explanation
Indices: 22953--23018 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
22943 CAAAGCGTGA
22953 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGCAAGTC
*
22973 AAAGCACTCGCA--C-ACTC
1 AAAGCACTCGCACGCAAGTC
*
22990 AAAGCACTC-TATCGCAAGTC
1 AAAGCACTCGCA-CGCAAGTC
23010 AAAGCACTC
1 AAAGCACTC
23019 TATCGCTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 1 0.03
17 12 0.31
18 1 0.03
19 1 0.03
20 24 0.62
ACGTcount: A:0.36, C:0.35, G:0.15, T:0.14
Consensus pattern (20 bp):
AAAGCACTCGCACGCAAGTC
Left flanking sequence: Indices 22453 -- 22952
GGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAA
GAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACT
TCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACT
TTCAAACCTATGAGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCT
GTCTCTCTTTGTTCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCG
CATATGTCAGGTAAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGG
AAGAGCGGAGCTCCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGC
TTCGCGGCGAGCGCTTTGCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 23019 -- 23518
TATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACT
CGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTT
CAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCT
GTTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTG
GGCTTTGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGG
GGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTG
GCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGG
TAGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCA
Found at i:22993 original size:17 final size:16
Alignment explanation
Indices: 22965--23088 Score: 81
Period size: 16 Copynumber: 7.3 Consensus size: 16
22955 AGCACTCGCA
*
22965 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
22981 CGCACACTCAAAGCACTCTAT
1 CGCA-ACTCAAAGCA--C--T
*
23002 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
* *
23018 C-TATCGCTCAAAGCACT
1 CGCA--ACTCAAAGCACT
*
23035 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
* *
23051 C-TATCGCTCAAAGCACT
1 CGCA--ACTCAAAGCACT
*
23068 CGCAAGTCAAAGCACT
1 CGCAACTCAAAGCACT
23084 CGCAA
1 CGCAA
23089 TATACGCGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
15 2 0.02
16 32 0.39
17 31 0.37
18 3 0.04
19 1 0.01
20 9 0.11
21 5 0.06
ACGTcount: A:0.35, C:0.34, G:0.15, T:0.16
Consensus pattern (16 bp):
CGCAACTCAAAGCACT
Left flanking sequence: Indices 22465 -- 22964
GTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAAGAACTGCTGCGC
CGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACTTCGATAGGCGAG
AGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACTTTCAAACCTATG
AGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGT
TCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGT
AAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCT
CCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGC
GCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCA
Right flanking sequence: Indices 23089 -- 23588
TATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTCAAGC
GCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCTGTTGA
GGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTGGGCTT
TGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCT
TTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTGGCCAA
GCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGGTAGAG
GAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCCTGTCCCCGCCTAAG
AAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTCGGTT
Found at i:23043 original size:33 final size:33
Alignment explanation
Indices: 22965--23084 Score: 170
Period size: 33 Copynumber: 3.5 Consensus size: 33
22955 AGCACTCGCA
* *
22965 CGCAAGTCAAAGCACTCGCA-CACTCAAAGCACTCTAT
1 CGCAAGTCAAAGCACTC-TATCGCTCAAAGCA--C--T
23002 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
1 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
23035 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
1 CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
23068 CGCAAGTCAAAGCACTC
1 CGCAAGTCAAAGCACTC
23085 GCAATATACG
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
33 51 0.64
35 1 0.01
36 1 0.01
37 27 0.34
ACGTcount: A:0.34, C:0.34, G:0.15, T:0.17
Consensus pattern (33 bp):
CGCAAGTCAAAGCACTCTATCGCTCAAAGCACT
Left flanking sequence: Indices 22465 -- 22964
GTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGGATGGAAGAACTGCTGCGC
CGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTAGAACAGAACTTCGATAGGCGAG
AGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACTAAATTGGACTTTCAAACCTATG
AGTCGAACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGT
TCCTAAAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGT
AAGGCGGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCT
CCAACCAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGC
GCTTTGCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCA
Right flanking sequence: Indices 23085 -- 23584
GCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTTC
AAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCCCTTCTG
TTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTTGCTCCCGACCCTTCTCGTTTGG
GCTTTGCACAATAACACTCGCAAGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGG
GGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCTCGTGACGTGACGTTGG
CCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGAGGGGGAACAAGCGGGGT
AGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCCTGTCCCCGCC
TAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTC
Found at i:23189 original size:19 final size:19
Alignment explanation
Indices: 23165--23248 Score: 89
Period size: 19 Copynumber: 4.3 Consensus size: 19
23155 CTCGCAAGAG
23165 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
*
23184 TGCTCGCGACGTTTCA-CTT
1 TGCTCGCGACG-TTGAGCTT
* **
23203 TGCTCCCTTCTGTTGAGGCTT
1 TGCTCGCGAC-GTTGA-GCTT
*
23224 TGCTCGCGACGTTTAGCTT
1 TGCTCGCGACGTTGAGCTT
23243 TGCTCG
1 TGCTCG
23249 TTGAGCTTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
19 34 0.65
20 8 0.15
21 10 0.19
ACGTcount: A:0.08, C:0.29, G:0.26, T:0.37
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 22665 -- 23164
AACCCGTGCAGATGCCTGCATGCAATTGCGGTCAGTCGCGCTACCTCTGTCTCTCTTTGTTCCTA
AAGATTGGCTGGGTCTCGAAGACGGCATTTCGCTGCCAACCCTAGCCGCATATGTCAGGTAAGGC
GGCCTCGAAGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCTCCAAC
CAAAGAAGCGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGCGCTTT
GCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTC
AAAGCACTCTATCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTAT
CGCTCAAAGCACTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAG
Right flanking sequence: Indices 23249 -- 23748
TTGAGCTTTGCTCCCGACCCTTCTCGTTTGGGCTTTGCACAATAACACTCGCAAGGGGCTTTGCA
CAAAGCACGCACTCGCAAAGCAAAGAGTGGGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAG
AGTGGGGGCTTTGCTCGTGACGTGACGTTGGCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATA
GTGAAAGAAAGAGAGGGGGAACAAGCGGGGTAGAGGAATTGGTCGACTCATCAGGCTCATGACCT
GAAGATTGCAGGTTCGAATCCTGTCCCCGCCTAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCT
GCTTCCAAGTCGGTTAGAATGATGGCCATGCTCCGAGTAAAGCCACTTTCAGGAAGAAGCCAGCA
ACAAGGCAAAAATACAGCCTTTCAAGGGGCCTAGTCAAGCCTCTGTCAGAGATGAGGCGCCAGAT
CTCATTCAACAACAAAAAGCAAATGGGTCTGATCTCCCCCTACAA
Found at i:23358 original size:40 final size:40
Alignment explanation
Indices: 23303--23392 Score: 180
Period size: 40 Copynumber: 2.2 Consensus size: 40
23293 ACACTCGCAA
23303 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
1 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
23343 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
1 GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
23383 GGGGCTTTGC
1 GGGGCTTTGC
23393 TCGTGACGTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.14
Consensus pattern (40 bp):
GGGGCTTTGCACAAAGCACGCACTCGCAAAGCAAAGAGTG
Left flanking sequence: Indices 22803 -- 23302
AGAGGGCGGCTTTGCTCATGCACGAAGGGCTAGCGAGGGGAAGAGCGGAGCTCCAACCAAAGAAG
CGCCGCCTAGCACGCGCTGGTTCTATCCTAAAGCACTCGCTTCGCGGCGAGCGCTTTGCACAAAG
CACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACT
CTATCGCAAGTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCTATCGCTCAAA
GCACTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGA
CGTTTCACTTTGCTCCCTTCTGTTGAGGCTTTGCTCGCGACGTTTAGCTTTGCTCGTTGAGCTTT
GCTCCCGACCCTTCTCGTTTGGGCTTTGCACAATAACACTCGCAA
Right flanking sequence: Indices 23393 -- 23892
TCGTGACGTGACGTTGGCCAAGCAACCAAAGCCGGGACCTAGGTGTCCATAGTGAAAGAAAGAGA
GGGGGAACAAGCGGGGTAGAGGAATTGGTCGACTCATCAGGCTCATGACCTGAAGATTGCAGGTT
CGAATCCTGTCCCCGCCTAAGAAGGAAGCAAAGCTCCAAATCGAGACCGCTGCTTCCAAGTCGGT
TAGAATGATGGCCATGCTCCGAGTAAAGCCACTTTCAGGAAGAAGCCAGCAACAAGGCAAAAATA
CAGCCTTTCAAGGGGCCTAGTCAAGCCTCTGTCAGAGATGAGGCGCCAGATCTCATTCAACAACA
AAAAGCAAATGGGTCTGATCTCCCCCTACAAGACCGCTAACCAAACGGAAACGAGATACTCTCTG
ATCTACCGACTGCACCGAACTTCAAAAGGGAAGATTCTCTGATCTGACCTCCGAAAGCAAGAAGC
AAAACCGTCATGGGCGTGCCGTCATGCTGTTCAGGTTCGGCTAAA
Found at i:25348 original size:14 final size:14
Alignment explanation
Indices: 25329--25357 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25319 AGTCTATGTC
25329 GCTTTTAGTGTTGT
1 GCTTTTAGTGTTGT
25343 GCTTTTAGTGTTGT
1 GCTTTTAGTGTTGT
25357 G
1 G
25358 GAAAGAAGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.31, T:0.55
Consensus pattern (14 bp):
GCTTTTAGTGTTGT
Left flanking sequence: Indices 24829 -- 25328
ACTCGGGATTACACTTGCAAGTTGTCCTATACCTAGATAGCTTCAGAATTGATGCCTGCACCACT
GGCTATTTAGGCAGCTCCCGAAGACACCCGCGACGGATGGATAGCACAATTGCTCACCAGACACT
GGGAGTTGGCTGCTATTATGGCTCCACCAGGTACATATTTGTTGTGATTCTTGACCGGTATCCCA
CAATATAGACAAAGAAAAAATGAGAAATTGAAACTTTAAACGCAAAGAAAAGAGCTATTATCTTA
TCTTCGAACCTCCTAAAAGAAAGAATTCACTCCTGAGTCAATACAGGACCTTGGTAAACGCAATG
ATCAGAAAAAGCCTCCTTGGCTTCCTATCTCATCATAATGCCAGCTTTTTCAGCATGTCCTCGTG
CTTGGTTTGAGCCAGTGGTTCATTGCCACTCACTTAATGATCTCGCAGCAGTGCGGACTCATCTA
TGTTTGTCAGGCACACAGATAGAGGTCAACTCAAAAGTCTATGTC
Right flanking sequence: Indices 25358 -- 25857
GAAAGAAGACAAAGTCTTGACTGTTGCAAAAGTGTTGAAAGACTGAACTCATTCAGGCGTACTTG
CTCGATGTTGGCAAGGACGAGCGGAAGACGGAATCCCTCGAGCTTGTACGAAGGAAGGACGGATT
GAGAACGTTCTCGTTCGAGCCCCTGACATCCGGTTACGGTACTTACCGGCGTCACAGAGTCCGAG
ATAGATTGATTTATTAACAGACTGACCTGAAAGGGAAGGGCAACAATGGAGATACCCGAGCAAAG
GGTAAGGACCGAAAGAAGACGCAAGGAACCCCTGTGGTACCGAGACTACGCAAGGGAAAGAGTCA
ATATCCTCTTCCTATGGTTGTTCTTTTTTTTCCGAAAGACAAAAAAGTAGGTGTTGGGGCCATAG
TAGGTGAGCTTCTGAAGAGAAGAGAAGAATTGGCTTTCCCTTATCGTAGGAGTGGGAGAGGGAAT
AGACAGAATAGTATGAGATCTTCCTTATAAGAAGGAAGACCTCAA
Found at i:29919 original size:12 final size:12
Alignment explanation
Indices: 29902--29927 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
29892 GAACTGGCAT
29902 ATAGATAGACTC
1 ATAGATAGACTC
29914 ATAGATAGACTC
1 ATAGATAGACTC
29926 AT
1 AT
29928 GTCTCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (12 bp):
ATAGATAGACTC
Left flanking sequence: Indices 29402 -- 29901
AAGGTCCTCAAGTTGCGAACGCCCTCTCCTCCCTCACTGACTTAGCTGCTTTACGATACGAGTGT
ATGTTCTCTCATTCATGGGAAGTCAAGGAAGAGATAGGAAGGGAAAGGCTGACCGGAGGGAAGGA
AGGACTGACCAACCCTGGAGTGACGGCTTGACCTCGCTTCCCTATCGTTCCGGGACAGAAGAGAC
CAGACTAACCGACCGACGGGAAGGAAAGAGTGACCAACCAAGCCAAGAGTGACCGGTTCCGCTCG
GGCTTCCCACCCGGGAACCCCTCGATGCCTTCCCACTGCTGGAATTCCTCTTTCTTTCTCACCAC
TGAGCTGGTCCTACTCCGGTCGAGCTCAAAAGGGAAACCTTGACTCGAGTTGAGACAGATGAGAC
CGCTCTCCCTCTCTGTCTTCACTCTTTGTCTTTTCGCTTCGCTTTTCCTCTCTTCTTGCATCTGT
TATCTGCCGTCCTCTCTCTTCTTCCACTCGAACCGGAACTGGCAT
Right flanking sequence: Indices 29928 -- 30427
GTCTCATATAGTCTTGTACTGTAGTAAAGTACCTCTACTATCACTATTCTACTCGTTCTTATCCA
TCTGGAAAGTCGTAGGTAGTAGATCACTATGGATCTCGATTCACACGCGTTAGTATAGTTGTTAA
TCCACTACAAAGAAACGAGACAAAAGGGGTCAGGAGAGAGTGCAAGTCTCGTCTCGCGACGTCAG
GAGCGAGACGAGCAGGCAAGTGTATCAGTGCCCGGTTCACCAGGTTCTACCTTTAGCAGGCCCAA
TCCACCTAAAAAGAAGAGTTTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGC
AAGTCGAACGTTGGGGAGCAAACCCGTAGTCCAGCGTAGTAGACTTGACGGTCAAGAGCAAGTGA
TGGAATGAGAACCCCGAAACGACAGGTCGTCGGTCTCAAAACCCAACTGCTGGGACTGAGAAATA
GGAAGAGGAGTTTGAGTAGGGCTGGACAAGACAAAGTGAATGAAA
Found at i:31300 original size:49 final size:49
Alignment explanation
Indices: 31228--31408 Score: 319
Period size: 49 Copynumber: 3.7 Consensus size: 49
31218 GAGCGCTTTG
**
31228 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAA
1 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
*
31277 TGCAAAGCATCGCGAT-AGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
31326 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
31375 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCG
1 TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCG
31409 TGCGAGTGCT
Statistics
Matches: 126, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
48 1 0.01
49 124 0.98
50 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (49 bp):
TGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
Left flanking sequence: Indices 30728 -- 31227
GTCATTTGTTTCCGAAAAGGATCCGTTCGAGAAAGAAGAAGATCCATTTCGGGTCGAACCAACCA
CCATCTTGTGTAGTAATTATGGATGCAGATAGAAAGTCCTCGGTCATACTTGAAGCTGATCGATC
ACAAATACCTATTGCATCCTCAGTGGATTCGAATATCCCTTCGGGATCCTATCAAAGAATCACTT
ATCCCATTCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTAATTCGATCACGAAAACT
GTGATTCTTGAACGGGGAAGATTGCGATGAAAGAGACTGTCAAAGCACTCGCAAAGCGTGAGGGT
GCGAAGCAACGTCACGTTATTATATTATATTAGCAAAGCCCAAATGTCGGGAGCAAAGCTCAACA
GAAGGGTCGGTCGCGAGCAAAGCAAAACGAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGC
TTTCACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTTG
Right flanking sequence: Indices 31409 -- 31908
TGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGATAGAGTG
CTTTGAGCGATAGAGTGCTTTTAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGC
GTGCGAGTGCTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTTGGTTAAGACAG
GTCAGAGAAAAGTCAAGGTTCAGACAGGTTTCTGACTGTGACCAAGGGTCAGAATGAGAAGAAAG
GATATTGTTGTGTTTTGATGCGACCCTCCACACTGGCCCCTTCCTTCGTCGATTCTCGGGCCTCA
CAGAATATGCACATCATCAATGACGAGCCAAGCTAGGTCCACTCGCTCTGCCCGAAAGTCAAACA
ACAAGGTTCCATCTTCCCCCCACCCCAGATTGATCGATTCATGCAAGGCTGGCGACATATAACTG
CTAATTGATCGTCTACTATGCCGTTGTCGGATCGTTTTGGTTGGG
Found at i:31411 original size:20 final size:20
Alignment explanation
Indices: 31386--31551 Score: 192
Period size: 20 Copynumber: 8.8 Consensus size: 20
31376 GCAAAGCATC
31386 GCGTGCGAGTGCTTTGACTT
1 GCGTGCGAGTGCTTTGACTT
31406 GCGTGCGAGTGCTTTGA---
1 GCGTGCGAGTGCTTTGACTT
*
31423 GTGTGCGAGTGCTTTGACTT
1 GCGTGCGAGTGCTTTGACTT
31443 GCGTGCGAGTGCTTTGACTT
1 GCGTGCGAGTGCTTTGACTT
*
31463 GCGAT-AGAGTGCTTTGA---
1 GCG-TGCGAGTGCTTTGACTT
* *
31480 GCGAT-AGAGTGCTTT---TA
1 GCG-TGCGAGTGCTTTGACTT
*
31497 GTGTGCGAGTGCTTTGACTT
1 GCGTGCGAGTGCTTTGACTT
31517 GCGTGCGAGTGCTTTGACTT
1 GCGTGCGAGTGCTTTGACTT
31537 GCGTGCGAGTGCTTT
1 GCGTGCGAGTGCTTT
31552 TCACGCTTTG
Statistics
Matches: 129, Mismatches: 7, Indels: 20
0.83 0.04 0.13
Matches are distributed among these distances:
16 1 0.01
17 42 0.33
20 85 0.66
21 1 0.01
ACGTcount: A:0.13, C:0.17, G:0.36, T:0.35
Consensus pattern (20 bp):
GCGTGCGAGTGCTTTGACTT
Left flanking sequence: Indices 30886 -- 31385
TCGAATATCCCTTCGGGATCCTATCAAAGAATCACTTATCCCATTCCAGCGAATGATCCTATACA
GTTCGTATATCTATTTCGTAATTCGATCACGAAAACTGTGATTCTTGAACGGGGAAGATTGCGAT
GAAAGAGACTGTCAAAGCACTCGCAAAGCGTGAGGGTGCGAAGCAACGTCACGTTATTATATTAT
ATTAGCAAAGCCCAAATGTCGGGAGCAAAGCTCAACAGAAGGGTCGGTCGCGAGCAAAGCAAAAC
GAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCT
GACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTA
ATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
GCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATC
Right flanking sequence: Indices 31552 -- 32051
TCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTTGGTTAAGACAGGTCAGAGAAAAGT
CAAGGTTCAGACAGGTTTCTGACTGTGACCAAGGGTCAGAATGAGAAGAAAGGATATTGTTGTGT
TTTGATGCGACCCTCCACACTGGCCCCTTCCTTCGTCGATTCTCGGGCCTCACAGAATATGCACA
TCATCAATGACGAGCCAAGCTAGGTCCACTCGCTCTGCCCGAAAGTCAAACAACAAGGTTCCATC
TTCCCCCCACCCCAGATTGATCGATTCATGCAAGGCTGGCGACATATAACTGCTAATTGATCGTC
TACTATGCCGTTGTCGGATCGTTTTGGTTGGGCTTGTTTCCTTTGTTCCTCCGGGATGGATAATA
GTAGACCGGAAAATGGGGGCTAAGAGTGGGAGAATGGGATGAGGAACCACTGCCTTTTGTAGTAT
CAACAACCACCCATAGTGGATGTTTACACTAAAAAACAGACGGAC
Found at i:31438 original size:37 final size:37
Alignment explanation
Indices: 31388--31551 Score: 185
Period size: 37 Copynumber: 4.4 Consensus size: 37
31378 AAAGCATCGC
31388 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGT
*
31425 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACT
1 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGT
* *
31462 -TGCGATAGAGTGCTTTGA---GCGAT-AGAGTGCTTTTAGT
1 GTGC----GAGTGCTTTGACTTGCG-TGCGAGTGCTTTGAGT
*
31499 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA---GT
31539 GTGCGAGTGCTTT
1 GTGCGAGTGCTTT
31552 TCACGCTTTG
Statistics
Matches: 107, Mismatches: 7, Indels: 23
0.78 0.05 0.17
Matches are distributed among these distances:
34 11 0.10
36 4 0.04
37 63 0.59
38 4 0.04
40 25 0.23
ACGTcount: A:0.13, C:0.16, G:0.35, T:0.35
Consensus pattern (37 bp):
GTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGT
Left flanking sequence: Indices 30888 -- 31387
GAATATCCCTTCGGGATCCTATCAAAGAATCACTTATCCCATTCCAGCGAATGATCCTATACAGT
TCGTATATCTATTTCGTAATTCGATCACGAAAACTGTGATTCTTGAACGGGGAAGATTGCGATGA
AAGAGACTGTCAAAGCACTCGCAAAGCGTGAGGGTGCGAAGCAACGTCACGTTATTATATTATAT
TAGCAAAGCCCAAATGTCGGGAGCAAAGCTCAACAGAAGGGTCGGTCGCGAGCAAAGCAAAACGA
GCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCTGA
CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAAT
GCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
Right flanking sequence: Indices 31552 -- 32051
TCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTTGGTTAAGACAGGTCAGAGAAAAGT
CAAGGTTCAGACAGGTTTCTGACTGTGACCAAGGGTCAGAATGAGAAGAAAGGATATTGTTGTGT
TTTGATGCGACCCTCCACACTGGCCCCTTCCTTCGTCGATTCTCGGGCCTCACAGAATATGCACA
TCATCAATGACGAGCCAAGCTAGGTCCACTCGCTCTGCCCGAAAGTCAAACAACAAGGTTCCATC
TTCCCCCCACCCCAGATTGATCGATTCATGCAAGGCTGGCGACATATAACTGCTAATTGATCGTC
TACTATGCCGTTGTCGGATCGTTTTGGTTGGGCTTGTTTCCTTTGTTCCTCCGGGATGGATAATA
GTAGACCGGAAAATGGGGGCTAAGAGTGGGAGAATGGGATGAGGAACCACTGCCTTTTGTAGTAT
CAACAACCACCCATAGTGGATGTTTACACTAAAAAACAGACGGAC
Found at i:31547 original size:74 final size:75
Alignment explanation
Indices: 31386--31551 Score: 248
Period size: 74 Copynumber: 2.2 Consensus size: 75
31376 GCAAAGCATC
*
31386 GCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGA
1 GCGTGCGAGTGCTTTGA--TGCGTGAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGA
31451 GTGCTTTGACTT
64 GTGCTTTGACTT
* *
31463 GCGAT-AGAGTGCTTTGA-GCGAT-AGAGTGCTTTTAGTGTGCGAGTGCTTTGACTTGCGTGCGA
1 GCG-TGCGAGTGCTTTGATGCG-TGAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGA
31525 GTGCTTTGACTT
64 GTGCTTTGACTT
31537 GCGTGCGAGTGCTTT
1 GCGTGCGAGTGCTTT
31552 TCACGCTTTG
Statistics
Matches: 82, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
73 1 0.01
74 65 0.79
75 1 0.01
77 14 0.17
78 1 0.01
ACGTcount: A:0.13, C:0.17, G:0.36, T:0.35
Consensus pattern (75 bp):
GCGTGCGAGTGCTTTGATGCGTGAGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGT
GCTTTGACTT
Left flanking sequence: Indices 30886 -- 31385
TCGAATATCCCTTCGGGATCCTATCAAAGAATCACTTATCCCATTCCAGCGAATGATCCTATACA
GTTCGTATATCTATTTCGTAATTCGATCACGAAAACTGTGATTCTTGAACGGGGAAGATTGCGAT
GAAAGAGACTGTCAAAGCACTCGCAAAGCGTGAGGGTGCGAAGCAACGTCACGTTATTATATTAT
ATTAGCAAAGCCCAAATGTCGGGAGCAAAGCTCAACAGAAGGGTCGGTCGCGAGCAAAGCAAAAC
GAGCAAAGCTCAACGTCGCGAGCACTCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCT
GACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTA
ATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
GCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATC
Right flanking sequence: Indices 31552 -- 32051
TCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTTGGTTAAGACAGGTCAGAGAAAAGT
CAAGGTTCAGACAGGTTTCTGACTGTGACCAAGGGTCAGAATGAGAAGAAAGGATATTGTTGTGT
TTTGATGCGACCCTCCACACTGGCCCCTTCCTTCGTCGATTCTCGGGCCTCACAGAATATGCACA
TCATCAATGACGAGCCAAGCTAGGTCCACTCGCTCTGCCCGAAAGTCAAACAACAAGGTTCCATC
TTCCCCCCACCCCAGATTGATCGATTCATGCAAGGCTGGCGACATATAACTGCTAATTGATCGTC
TACTATGCCGTTGTCGGATCGTTTTGGTTGGGCTTGTTTCCTTTGTTCCTCCGGGATGGATAATA
GTAGACCGGAAAATGGGGGCTAAGAGTGGGAGAATGGGATGAGGAACCACTGCCTTTTGTAGTAT
CAACAACCACCCATAGTGGATGTTTACACTAAAAAACAGACGGAC
Found at i:34600 original size:22 final size:22
Alignment explanation
Indices: 34570--34612 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
34560 TCGTCCAGCG
*
34570 GAGCTTAGAAGAAGGCGACTCA
1 GAGCCTAGAAGAAGGCGACTCA
*
34592 GAGCCTAGAAGAAGGTGACTC
1 GAGCCTAGAAGAAGGCGACTC
34613 GCGCAGATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.19, G:0.33, T:0.14
Consensus pattern (22 bp):
GAGCCTAGAAGAAGGCGACTCA
Left flanking sequence: Indices 34070 -- 34569
GTCTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATG
CGATCCTTTATAGTTCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTAATTCTGACT
GAAACAAGGGGTGGGTCTTGACCATCATTGATTTGAGGGCGCGGGCTGCCTGATTATCTATCAAA
AAAAGGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACTTCGGACGTAGAACCGGGTTG
CGCTGCTTGATGCTCCGATCGAAAACAAATCCGTGGGGCTATGCCGGTACGACAGAATATGCGTT
AGAAAGGTCAATCCCTGTCCCCTACGACACCAAAAACCGGGCCGAACTCTTCACCCGCCCGCTTC
CATAGAACAAGATCGTGGCAACGTAGACCTAGGTGGGAATATTTGATCCTGGGGAACCATCACAA
GTACGGCCGGCCTATATTTTAACGAGAATGCCGTGTCGTCCAGCG
Right flanking sequence: Indices 34613 -- 35112
GCGCAGATAGCTGACTCCTTTTCAATATCAAGGAATAGCCAAACCAACCCAGCTGGCTGGTCAAT
CTCAGAGATCTTATCGGCCGGCAAACCGGATACGGACGACCACGGTCCCGACCTTACCAGCACCG
GAGGTTGACTAATCAATGAACCGAACCCACTTTCTTTTCAACCAAAAAGAAAAGAAAAGCCACCG
TCACGACTGGAAGGAAGGAGTGAGGCTGACTTCATCCAAGTCAGCGAAACTCGGAGTGACCATTA
TCACTCACTCTTTCTTCCTTCGTAACCAAGTCAGCGTCACGATGGAAAGGTTCCCTTTTTCTCCG
TAGGGGCAAGCAAGGAGGAGCACGTAGGAATGCCGACCACTACGCCACGCGGAGAGAAAGCGAGC
TTCCGCGACCTCTCAAACTTCGCAAAGAAGTTCCGTATTACATTACATTATGATGACCTGGTCGA
GAGAGTACGATACATCGGTGTAAAGGATTGAGTGGGATCAATGAG
Found at i:36187 original size:49 final size:45
Alignment explanation
Indices: 36130--36440 Score: 341
Period size: 43 Copynumber: 7.3 Consensus size: 45
36120 CCCTCCGTAC
36130 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGT
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCA-T-A-T
36178 GAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAT-T
1 -AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
36223 -AAGCGCTCGCAAGTC--AG----C-A-CGCGATGCTTTGCAT-T
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
*
36258 -AAGCGCTCGCAAGTC--AG----C-A-CGCGATGCTTTGC--AC
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
*
36292 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGC--AC
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
*
36335 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGC--AC
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
36378 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGT
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCA-T-A-T
36426 GAAAGCGCTCGCAAG
1 -AAAGCGCTCGCAAG
36441 AGTGCTCGCG
Statistics
Matches: 244, Mismatches: 2, Indels: 32
0.88 0.01 0.12
Matches are distributed among these distances:
35 63 0.26
36 1 0.00
37 3 0.01
41 3 0.01
42 1 0.00
43 114 0.47
45 1 0.00
47 1 0.00
48 1 0.00
49 56 0.23
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (45 bp):
AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATAT
Left flanking sequence: Indices 35630 -- 36129
CTTCATGACGCGCGATCGATTGGCTGGAAACCCGGGACTGAAAAGGATAGGAATTAAGAAAAAGA
TATAAGATGGCCCTACTGGCGGAATGATGGATGGCGGGAACATAGAGGCACTCTCAATCTCACAA
ATTCTTGAGTTTTGTAAACATTAGTTGACTTTCCATCTCGATCGAGTGGTGGAAGAATTGAGAAA
AGATGAATGGTACGCAGACTCACTCGCGATAGAAGGTAACCATATGGAATGGACATCACCTTTGA
GGCAGAAAATGGCTTCTGAGATGCATGATGGCCCTACTGATTCAAGCTCGCGATCGCGTTCGTTC
GTTCGCCCATAAACACAGCAATCAATCCTATCCTATAGGCTACTTAGACTAAGACCACAAACCTT
GGAAAGACGGAGAGATTGAGGGACTGATCACTTAGTGAACTCAGATACACTCCCTATCGCCTATA
TCGAAGACTGATTCCTATTAGAATCGCAAAAGAACCCCTCCGTAC
Right flanking sequence: Indices 36441 -- 36940
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGTTTAGCTTTGCTCCCTTCT
CATCAAGTTGGGTAGAACTTCTTTTTTGGGGGAGCTGTTCGTGCTGGGCACATCTCTATCCTAGC
TCCTTCTTCATCGGCCGGAAGAAGAAAAGTAGATAGATGAATAGATTGATCTCGACTTGGAAGTT
CCTATGTATGAGAAAGTCAGACCAACGTCGACTAGCAGGGTGCTTATACTTGCTTACTTATCCAC
ATCCTTTTCATGCTTCTGCTTCCTCCGCCGCCACTCGTTGGGGCAAGACCACAGAAATTCCATTG
TGCGATTGGGTCAGCATTGGTGGGGTGGGAGGGGCTCGAGTCCATTATATACCTTGTTGGTTGAA
TGTTGAATGGTTGAATGTTTAATTGAGAAAGAAATGTGACAAGGTCAGCCACCTGCTGCATGCTC
TATAGTCGGTGCTTTCTCGTGGTCCAGGAATTCCTGCTTCCGTGA
Found at i:36253 original size:35 final size:35
Alignment explanation
Indices: 36207--36308 Score: 186
Period size: 35 Copynumber: 2.9 Consensus size: 35
36197 AGCACTCTAT
36207 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
1 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
36242 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
1 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
**
36277 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCA
1 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
36309 AAGCACTCTA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (35 bp):
CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
Left flanking sequence: Indices 35707 -- 36206
CTACTGGCGGAATGATGGATGGCGGGAACATAGAGGCACTCTCAATCTCACAAATTCTTGAGTTT
TGTAAACATTAGTTGACTTTCCATCTCGATCGAGTGGTGGAAGAATTGAGAAAAGATGAATGGTA
CGCAGACTCACTCGCGATAGAAGGTAACCATATGGAATGGACATCACCTTTGAGGCAGAAAATGG
CTTCTGAGATGCATGATGGCCCTACTGATTCAAGCTCGCGATCGCGTTCGTTCGTTCGCCCATAA
ACACAGCAATCAATCCTATCCTATAGGCTACTTAGACTAAGACCACAAACCTTGGAAAGACGGAG
AGATTGAGGGACTGATCACTTAGTGAACTCAGATACACTCCCTATCGCCTATATCGAAGACTGAT
TCCTATTAGAATCGCAAAAGAACCCCTCCGTACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCG
ATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCTAT
Right flanking sequence: Indices 36309 -- 36808
AAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTT
GCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCA
AGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGTTTAGCTTTGCTCCCTT
CTCATCAAGTTGGGTAGAACTTCTTTTTTGGGGGAGCTGTTCGTGCTGGGCACATCTCTATCCTA
GCTCCTTCTTCATCGGCCGGAAGAAGAAAAGTAGATAGATGAATAGATTGATCTCGACTTGGAAG
TTCCTATGTATGAGAAAGTCAGACCAACGTCGACTAGCAGGGTGCTTATACTTGCTTACTTATCC
ACATCCTTTTCATGCTTCTGCTTCCTCCGCCGCCACTCGTTGGGGCAAGACCACAGAAATTCCAT
TGTGCGATTGGGTCAGCATTGGTGGGGTGGGAGGGGCTCGAGTCC
Found at i:36467 original size:19 final size:19
Alignment explanation
Indices: 36443--36486 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
36433 CTCGCAAGAG
36443 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
36462 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
36481 TGCTCG
1 TGCTCG
36487 TTTAGCTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.09, C:0.27, G:0.32, T:0.32
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 35943 -- 36442
TCGCGTTCGTTCGTTCGCCCATAAACACAGCAATCAATCCTATCCTATAGGCTACTTAGACTAAG
ACCACAAACCTTGGAAAGACGGAGAGATTGAGGGACTGATCACTTAGTGAACTCAGATACACTCC
CTATCGCCTATATCGAAGACTGATTCCTATTAGAATCGCAAAAGAACCCCTCCGTACAAAGCGCT
CGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACT
CTATCGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGC
ACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAG
CACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 36487 -- 36986
TTTAGCTTTGCTCCCTTCTCATCAAGTTGGGTAGAACTTCTTTTTTGGGGGAGCTGTTCGTGCTG
GGCACATCTCTATCCTAGCTCCTTCTTCATCGGCCGGAAGAAGAAAAGTAGATAGATGAATAGAT
TGATCTCGACTTGGAAGTTCCTATGTATGAGAAAGTCAGACCAACGTCGACTAGCAGGGTGCTTA
TACTTGCTTACTTATCCACATCCTTTTCATGCTTCTGCTTCCTCCGCCGCCACTCGTTGGGGCAA
GACCACAGAAATTCCATTGTGCGATTGGGTCAGCATTGGTGGGGTGGGAGGGGCTCGAGTCCATT
ATATACCTTGTTGGTTGAATGTTGAATGGTTGAATGTTTAATTGAGAAAGAAATGTGACAAGGTC
AGCCACCTGCTGCATGCTCTATAGTCGGTGCTTTCTCGTGGTCCAGGAATTCCTGCTTCCGTGAA
GTTCATTCGGACTGGACCGTGTAGAATGAATTGGGTTCGCTGGTG
Found at i:39151 original size:5 final size:5
Alignment explanation
Indices: 39136--39166 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
39126 TCGCGAGCCA
*
39136 ACGTC ATGTC ACGTC ACGTC ACGTC ACGTC A
1 ACGTC ACGTC ACGTC ACGTC ACGTC ACGTC A
39167 ATTGATGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.23
Consensus pattern (5 bp):
ACGTC
Left flanking sequence: Indices 38636 -- 39135
CAACTCCAAGTGTTTACGTAGTGGTGTTGTAGTTTTGTTTATGTAGCTTTCGACATAGCACATGT
ACCTGACGTATGGACGTTGTATCCTGCTCACAGTTACAGCTTGCATAGCACGCAGTAGGCGTCCG
TCGTAGCAAGAGTTGTAGGCTCGCGTAGCAGAAGGGACACTCGCTGAAAGAAGCTCGCGTAGTCC
ACTCTGGAAGATCCTCGTCGTAGGCCTTCCCATCGACAGCCGGCGTCACAGATATCAACTAAGAA
AACGTCATCAAAGAACATACAAAACGGGAGGCGGAAAGAAAGAAAGGTTGAACTTGACTATGGTG
TTTGTAGGCTTTCCATTCCATTACGAAAGGTGTCACACTTCTATGGTTAATAGTTAGTAGTTGTA
GGCTTTCGTACAGACGTAACAGGAGTTTGCTCGCATCCAATCTCGCTTCGCTTTGCTCTTGTAGG
CAGAGTCTACACTCTACGCTCGCTGTCTAGTCTACTCGCGAGCCA
Right flanking sequence: Indices 39167 -- 39666
ATTGATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGTCG
CGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAG
CGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTT
TCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCC
CAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGAT
AGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTG
ACTTGCGATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCG
AGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGATAGAGTGCTTT
Found at i:39294 original size:49 final size:49
Alignment explanation
Indices: 39240--39407 Score: 194
Period size: 49 Copynumber: 3.2 Consensus size: 49
39230 CGCGAGCACT
39240 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
39289 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC-----------GAGTGCTTTGA
** *
39349 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGAT-AGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGA
39398 CTTGCGAGCG
1 CTTGCGAGCG
39408 TTTCACTTTG
Statistics
Matches: 104, Mismatches: 3, Indels: 24
0.79 0.02 0.18
Matches are distributed among these distances:
49 59 0.57
60 44 0.42
61 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (49 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
Left flanking sequence: Indices 38740 -- 39239
CTTGCATAGCACGCAGTAGGCGTCCGTCGTAGCAAGAGTTGTAGGCTCGCGTAGCAGAAGGGACA
CTCGCTGAAAGAAGCTCGCGTAGTCCACTCTGGAAGATCCTCGTCGTAGGCCTTCCCATCGACAG
CCGGCGTCACAGATATCAACTAAGAAAACGTCATCAAAGAACATACAAAACGGGAGGCGGAAAGA
AAGAAAGGTTGAACTTGACTATGGTGTTTGTAGGCTTTCCATTCCATTACGAAAGGTGTCACACT
TCTATGGTTAATAGTTAGTAGTTGTAGGCTTTCGTACAGACGTAACAGGAGTTTGCTCGCATCCA
ATCTCGCTTCGCTTTGCTCTTGTAGGCAGAGTCTACACTCTACGCTCGCTGTCTAGTCTACTCGC
GAGCCAACGTCATGTCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGCGAGCAAAGCTC
AACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGTCGCGAGCACT
Right flanking sequence: Indices 39408 -- 39907
TTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATAT
TGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTT
TGAGTGAGAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTG
CGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGATAGAGTGCTTTG
ACTTGCGAGTGCTTTGATCATTCATAGGCCGAGAACTCCGGTTGCGCTTTGGTTGGCTTTCTCTT
ATAGCAACGTTGGTCTATTTTCTTTTACTTGACTCGACCTACTTGACTCAGCGGTTAGAGTATCG
CTTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTAAAACCAGCCGAAAACCCCGCT
TGCCAGCATGACAGCAAGCACGGACTGGCAGCAAGGAGTAAACGG
Found at i:39541 original size:37 final size:37
Alignment explanation
Indices: 39493--39631 Score: 217
Period size: 37 Copynumber: 3.8 Consensus size: 37
39483 TTGAGCGATA
39493 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
*
39530 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGAT-A
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCG-TGC
*
39567 GAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
* * *
39604 GAGTGCTTTGAGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGAGTGAGAGAGTGCTTTGA
39632 GTGAGAGAGT
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 1 0.01
37 91 0.98
38 1 0.01
ACGTcount: A:0.17, C:0.13, G:0.37, T:0.33
Consensus pattern (37 bp):
GAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
Left flanking sequence: Indices 38993 -- 39492
TCACACTTCTATGGTTAATAGTTAGTAGTTGTAGGCTTTCGTACAGACGTAACAGGAGTTTGCTC
GCATCCAATCTCGCTTCGCTTTGCTCTTGTAGGCAGAGTCTACACTCTACGCTCGCTGTCTAGTC
TACTCGCGAGCCAACGTCATGTCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGCGAGC
AAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTT
GAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGC
ATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGC
GATAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTG
CGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATA
Right flanking sequence: Indices 39632 -- 40131
GTGAGAGAGTGCTTTGACTTGCGATAGAGTGCTTTGACTTGCGAGTGCTTTGATCATTCATAGGC
CGAGAACTCCGGTTGCGCTTTGGTTGGCTTTCTCTTATAGCAACGTTGGTCTATTTTCTTTTACT
TGACTCGACCTACTTGACTCAGCGGTTAGAGTATCGCTTTCATACGGCGAGAGTCATTGGTTCAA
ATCCAATAGTAGGTAAAACCAGCCGAAAACCCCGCTTGCCAGCATGACAGCAAGCACGGACTGGC
AGCAAGGAGTAAACGGAATGACCAAAGCATCGATTGCTTCCACTTGTGGCCCGACCGACAGACAA
GGAACCCCTCTCTTCTTCTCTTCATGTATGTGGGCTGCCTGCCCTGTCCCGGATAGACGAAGAGG
AAGAAGGGAAAGAGGGAGGGGACAAAGGAGGACAAATAGGGAAGGAAGGTCGTTCTTTGGGGGTG
GAGGAGATGCGTATGAAGTCACTCAGATGGATGACGCCGCCTACC
Found at i:39581 original size:74 final size:71
Alignment explanation
Indices: 39444--39674 Score: 291
Period size: 74 Copynumber: 3.1 Consensus size: 71
39434 GCAAAGCTCT
*
39444 CTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAG
1 CTTGCGTGCGAGTGCTTTGA--GTG--A--GCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAT
39509 AGAGTGCTTTGA
60 AGAGTGCTTTGA
*
39521 CTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGATAGA
1 CTTGCGTGCGAGTGCTTTGAGTGAGCGAGTGCTTTGA---GCGATAGAGTGCTTTGAGTGATAGA
39586 GTGCTTTGA
63 GTGCTTTGA
* * * * *
39595 CTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGATAGA
1 CTTGCGTGCGAGTGCTTTGAGTGAGCGAGTGCTTTGAGCGATAGAGTGCTTTGA---GTGATAGA
39660 GTGCTTTGA
63 GTGCTTTGA
39669 CTTGCG
1 CTTGCG
39675 AGTGCTTTGA
Statistics
Matches: 140, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
71 27 0.19
73 1 0.01
74 89 0.64
75 3 0.02
77 20 0.14
ACGTcount: A:0.17, C:0.14, G:0.36, T:0.33
Consensus pattern (71 bp):
CTTGCGTGCGAGTGCTTTGAGTGAGCGAGTGCTTTGAGCGATAGAGTGCTTTGAGTGATAGAGTG
CTTTGA
Left flanking sequence: Indices 38944 -- 39443
TGAACTTGACTATGGTGTTTGTAGGCTTTCCATTCCATTACGAAAGGTGTCACACTTCTATGGTT
AATAGTTAGTAGTTGTAGGCTTTCGTACAGACGTAACAGGAGTTTGCTCGCATCCAATCTCGCTT
CGCTTTGCTCTTGTAGGCAGAGTCTACACTCTACGCTCGCTGTCTAGTCTACTCGCGAGCCAACG
TCATGTCACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGG
GGAGGGTCGGGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGC
ATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGT
GAGAGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGAC
TTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCT
Right flanking sequence: Indices 39675 -- 40174
AGTGCTTTGATCATTCATAGGCCGAGAACTCCGGTTGCGCTTTGGTTGGCTTTCTCTTATAGCAA
CGTTGGTCTATTTTCTTTTACTTGACTCGACCTACTTGACTCAGCGGTTAGAGTATCGCTTTCAT
ACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTAAAACCAGCCGAAAACCCCGCTTGCCAGC
ATGACAGCAAGCACGGACTGGCAGCAAGGAGTAAACGGAATGACCAAAGCATCGATTGCTTCCAC
TTGTGGCCCGACCGACAGACAAGGAACCCCTCTCTTCTTCTCTTCATGTATGTGGGCTGCCTGCC
CTGTCCCGGATAGACGAAGAGGAAGAAGGGAAAGAGGGAGGGGACAAAGGAGGACAAATAGGGAA
GGAAGGTCGTTCTTTGGGGGTGGAGGAGATGCGTATGAAGTCACTCAGATGGATGACGCCGCCTA
CCTATGAGCTACGAGAAGATCGAATCGGCGGAACGCACTTTTTGC
Found at i:39588 original size:54 final size:56
Alignment explanation
Indices: 39476--39675 Score: 161
Period size: 54 Copynumber: 3.6 Consensus size: 56
39466 GTGATATTGC
* * * * *
39476 GAGTGCTTTGA-GCGATAGAGTGCTTTGA---GTGA-GAGAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGATGCGAGAGAGTGCTTTGACTTGCGATGAGAGTGCTTTGA---GTGAGA
* *
39530 GAGTGCTTTGA-GTGAGAGAGTGCTTTGACTTGCGAT-AGAGTGCTTTGAGTGATA
1 GAGTGCTTTGATGCGAGAGAGTGCTTTGACTTGCGATGAGAGTGCTTTGAGTGAGA
* * *
39584 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA---GCG-TGCGAGTGCTTTGAGTGAGA
1 GAGTGCTTTGA--TGCGAGAGAGTGCTTTGACTTGCGATGAGAGTGCTTTGAGTGAGA
*
39638 GAGTGCTTTGACTTGCGATAGAGTGCTTTGACTTGCGA
1 GAGTGCTTTGA--TGCGAGAGAGTGCTTTGACTTGCGA
39676 GTGCTTTGAT
Statistics
Matches: 119, Mismatches: 15, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
53 1 0.01
54 86 0.72
57 32 0.27
ACGTcount: A:0.18, C:0.13, G:0.36, T:0.33
Consensus pattern (56 bp):
GAGTGCTTTGATGCGAGAGAGTGCTTTGACTTGCGATGAGAGTGCTTTGAGTGAGA
Left flanking sequence: Indices 38976 -- 39475
TTCCATTACGAAAGGTGTCACACTTCTATGGTTAATAGTTAGTAGTTGTAGGCTTTCGTACAGAC
GTAACAGGAGTTTGCTCGCATCCAATCTCGCTTCGCTTTGCTCTTGTAGGCAGAGTCTACACTCT
ACGCTCGCTGTCTAGTCTACTCGCGAGCCAACGTCATGTCACGTCACGTCACGTCACGTCAATTG
ATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGTCGCGAG
CACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTCAC
TTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAA
CGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGC
Right flanking sequence: Indices 39676 -- 40175
GTGCTTTGATCATTCATAGGCCGAGAACTCCGGTTGCGCTTTGGTTGGCTTTCTCTTATAGCAAC
GTTGGTCTATTTTCTTTTACTTGACTCGACCTACTTGACTCAGCGGTTAGAGTATCGCTTTCATA
CGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTAAAACCAGCCGAAAACCCCGCTTGCCAGCA
TGACAGCAAGCACGGACTGGCAGCAAGGAGTAAACGGAATGACCAAAGCATCGATTGCTTCCACT
TGTGGCCCGACCGACAGACAAGGAACCCCTCTCTTCTTCTCTTCATGTATGTGGGCTGCCTGCCC
TGTCCCGGATAGACGAAGAGGAAGAAGGGAAAGAGGGAGGGGACAAAGGAGGACAAATAGGGAAG
GAAGGTCGTTCTTTGGGGGTGGAGGAGATGCGTATGAAGTCACTCAGATGGATGACGCCGCCTAC
CTATGAGCTACGAGAAGATCGAATCGGCGGAACGCACTTTTTGCT
Found at i:39619 original size:91 final size:89
Alignment explanation
Indices: 39476--39668 Score: 298
Period size: 91 Copynumber: 2.1 Consensus size: 89
39466 GTGATATTGC
*
39476 GAGTGCTTTGAGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGAGCGATAGAGTGCTTTGAGCGAGAGAGTGCTTTGA--TGCGTGCGAGTGCTTTGA
39541 GTGAGAGAGTGCTTTGACTTGCGATA
64 GTGAGAGAGTGCTTTGACTTGCGATA
* * *
39567 GAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA-GCGTGCGAGTGCTTTG
1 GAGTGCTTTGAGCGATAGAGTGCTTTGA---GCGAGAGAGTGCTTTGATGCGTGCGAGTGCTTTG
39631 AGTGAGAGAGTGCTTTGACTTGCGATA
63 AGTGAGAGAGTGCTTTGACTTGCGATA
39658 GAGTGCTTTGA
1 GAGTGCTTTGA
39669 CTTGCGAGTG
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
91 81 0.85
94 14 0.15
ACGTcount: A:0.19, C:0.12, G:0.36, T:0.33
Consensus pattern (89 bp):
GAGTGCTTTGAGCGATAGAGTGCTTTGAGCGAGAGAGTGCTTTGATGCGTGCGAGTGCTTTGAGT
GAGAGAGTGCTTTGACTTGCGATA
Left flanking sequence: Indices 38976 -- 39475
TTCCATTACGAAAGGTGTCACACTTCTATGGTTAATAGTTAGTAGTTGTAGGCTTTCGTACAGAC
GTAACAGGAGTTTGCTCGCATCCAATCTCGCTTCGCTTTGCTCTTGTAGGCAGAGTCTACACTCT
ACGCTCGCTGTCTAGTCTACTCGCGAGCCAACGTCATGTCACGTCACGTCACGTCACGTCAATTG
ATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGGAGGGTCGGGAGCAAAGTGAAACGTCGCGAG
CACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCT
TGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGAGCGCTTTCAC
TTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAA
CGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGC
Right flanking sequence: Indices 39669 -- 40168
CTTGCGAGTGCTTTGATCATTCATAGGCCGAGAACTCCGGTTGCGCTTTGGTTGGCTTTCTCTTA
TAGCAACGTTGGTCTATTTTCTTTTACTTGACTCGACCTACTTGACTCAGCGGTTAGAGTATCGC
TTTCATACGGCGAGAGTCATTGGTTCAAATCCAATAGTAGGTAAAACCAGCCGAAAACCCCGCTT
GCCAGCATGACAGCAAGCACGGACTGGCAGCAAGGAGTAAACGGAATGACCAAAGCATCGATTGC
TTCCACTTGTGGCCCGACCGACAGACAAGGAACCCCTCTCTTCTTCTCTTCATGTATGTGGGCTG
CCTGCCCTGTCCCGGATAGACGAAGAGGAAGAAGGGAAAGAGGGAGGGGACAAAGGAGGACAAAT
AGGGAAGGAAGGTCGTTCTTTGGGGGTGGAGGAGATGCGTATGAAGTCACTCAGATGGATGACGC
CGCCTACCTATGAGCTACGAGAAGATCGAATCGGCGGAACGCACT
Found at i:46266 original size:20 final size:20
Alignment explanation
Indices: 46241--46281 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
46231 AGCGAAGCGA
*
46241 ACGTCACGTCATGTCAATTG
1 ACGTCACGTCACGTCAATTG
46261 ACGTCACGTCACGTCAATTG
1 ACGTCACGTCACGTCAATTG
46281 A
1 A
46282 TGGAAGGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (20 bp):
ACGTCACGTCACGTCAATTG
Left flanking sequence: Indices 45741 -- 46240
TGTAGATAGAAGAAACCATGAGTGGAAACAAGACCAGACTTGCGTAGCAGTACTAGCCTCATACA
GAGTCGCGCCCCTGTGAGTGGATGAGAAGAAGAAGCGGGGGCCGCCCTCTTTTCTTTTCCGCACC
AATCCTTATTGACTACTAACTCAATATGACGGTGGGTGTATAGCTCAGTTGGTAGAGCATTGGGC
TTTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTATACCCAAACCTACCTGACACTATCCTATGA
GTAAGGATGCGTAGTAGCGTTCAAAGATCACTCTTTGGTCGGGGTGAGGTAAGGAGTAGTCTCAG
AGTGGCTCGGTCATCGAGAGGCCTCTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAA
CGTAGATAGAGGGCTGGGCTGGCTCCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCT
GCTTAGCAGCTGCTTAGCGAAGAGGCGGAGTAAATAGCGAAGCGA
Right flanking sequence: Indices 46282 -- 46781
TGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACTCT
TGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTT
GAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTG
CGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTG
ACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGT
GATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGT
GCTTTGACGTGCGAGTGCTTTGAGTGATAGAGTGTGCTTTGCCCTACGGTTCACTTTGCGAGTGT
CGGGATAACCTTAGAAAGTCCGCGAAGTTCCGGTTCTCACTTTGC
Found at i:46449 original size:41 final size:42
Alignment explanation
Indices: 46390--46524 Score: 182
Period size: 41 Copynumber: 3.0 Consensus size: 42
46380 TATATTGCGA
46390 GTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
1 GTGC-TTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
46433 GTGC-TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
1 GTGCTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCAT--C--GC
*
46478 GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGC
1 --GTGC-TTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
46523 GT
1 GT
46525 ATATTGCGAG
Statistics
Matches: 83, Mismatches: 1, Indels: 16
0.83 0.01 0.16
Matches are distributed among these distances:
41 34 0.41
43 7 0.08
45 4 0.05
47 5 0.06
49 33 0.40
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGCTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
Left flanking sequence: Indices 45890 -- 46389
CTCAATATGACGGTGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCA
GGTTCAAGTCCTGCTATACCCAAACCTACCTGACACTATCCTATGAGTAAGGATGCGTAGTAGCG
TTCAAAGATCACTCTTTGGTCGGGGTGAGGTAAGGAGTAGTCTCAGAGTGGCTCGGTCATCGAGA
GGCCTCTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAACGTAGATAGAGGGCTGGGC
TGGCTCCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCG
AAGAGGCGGAGTAAATAGCGAAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATT
GATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACT
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGA
Right flanking sequence: Indices 46525 -- 47024
ATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGC
GATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGAGAGAGTGCT
TTGACTTGCGTGCGAGTGCTTTGACGTGCGAGTGCTTTGAGTGATAGAGTGTGCTTTGCCCTACG
GTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGCGAAGTTCCGGTTCTCACTTTGCCCG
ACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGTAGTTTCATTATTGGACCGCTCATGG
CTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCTCATCTATGAAAGATTCTTTATCCCC
GTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAAAGAGATTGTTATGAACTGACTAAAT
GACTATCTTATCCCTACCCGACATCTGGATCACGGGCAACGCGTT
Found at i:46503 original size:49 final size:50
Alignment explanation
Indices: 46437--46566 Score: 208
Period size: 54 Copynumber: 2.5 Consensus size: 50
46427 CATCGCGTGC
46437 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTT
1 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTTGCGAGTGCTT
*
46486 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG----TTGCGAGTGCTT
46540 TGACTTGCGAGCGCTTGAACTTAATGC
1 TGACTTGCGAGCGCTTGAACTTAATGC
46567 CCAAATGAGC
Statistics
Matches: 75, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
49 37 0.49
54 38 0.51
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (50 bp):
TGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTTGCGAGTGCTT
Left flanking sequence: Indices 45937 -- 46436
TTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTATACCCAAACCTACCTGACACTATCCTATGAG
TAAGGATGCGTAGTAGCGTTCAAAGATCACTCTTTGGTCGGGGTGAGGTAAGGAGTAGTCTCAGA
GTGGCTCGGTCATCGAGAGGCCTCTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAAC
GTAGATAGAGGGCTGGGCTGGCTCCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCTG
CTTAGCAGCTGCTTAGCGAAGAGGCGGAGTAAATAGCGAAGCGAACGTCACGTCATGTCAATTGA
CGTCACGTCACGTCAATTGATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAG
TGAAACGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGT
GCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
Right flanking sequence: Indices 46567 -- 47066
CCAAATGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAG
AGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACGTGCGAGTGCTTTGAGT
GATAGAGTGTGCTTTGCCCTACGGTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGCGA
AGTTCCGGTTCTCACTTTGCCCGACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGTAG
TTTCATTATTGGACCGCTCATGGCTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCTCA
TCTATGAAAGATTCTTTATCCCCGTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAAAG
AGATTGTTATGAACTGACTAAATGACTATCTTATCCCTACCCGACATCTGGATCACGGGCAACGC
GTTCCCTTCCATCCAATCAAGAAGTACGCCGCCCTCCTTCTTCTT
Found at i:46515 original size:90 final size:91
Alignment explanation
Indices: 46345--46524 Score: 308
Period size: 90 Copynumber: 1.9 Consensus size: 91
46335 CGCGAGCACT
46345 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGC
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG----TTGCGAGTGCTTTGACTTGCGAGCGC
46410 TTGAACTTAATGCAAAGCATCGCGTGCTGA
62 TTGAACTTAATGCAAAGCATCGCGTGCTGA
46440 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTTGCGAGTGCTTTGACTTGCGAGCGCTTGA
*
46504 ACTTAATGCAAAGCCTCGCGT
66 ACTTAATGCAAAGCATCGCGT
46525 ATATTGCGAG
Statistics
Matches: 84, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
90 49 0.58
95 35 0.42
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (91 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTTGCGAGTGCTTTGACTTGCGAGCGCTTGA
ACTTAATGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 45845 -- 46344
GGCCGCCCTCTTTTCTTTTCCGCACCAATCCTTATTGACTACTAACTCAATATGACGGTGGGTGT
ATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTATACC
CAAACCTACCTGACACTATCCTATGAGTAAGGATGCGTAGTAGCGTTCAAAGATCACTCTTTGGT
CGGGGTGAGGTAAGGAGTAGTCTCAGAGTGGCTCGGTCATCGAGAGGCCTCTCCTTATTCATTCT
ATAGGGCGGGGCTGCGGACCAACCAACGTAGATAGAGGGCTGGGCTGGCTCCGCCATCGAACACT
CCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCGAAGAGGCGGAGTAAATAGCG
AAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATTGATGGAAGGGTCGCGAGCAA
AGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACT
Right flanking sequence: Indices 46525 -- 47024
ATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGC
GATAGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTGAGTGAGAGAGTGCT
TTGACTTGCGTGCGAGTGCTTTGACGTGCGAGTGCTTTGAGTGATAGAGTGTGCTTTGCCCTACG
GTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGCGAAGTTCCGGTTCTCACTTTGCCCG
ACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGTAGTTTCATTATTGGACCGCTCATGG
CTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCTCATCTATGAAAGATTCTTTATCCCC
GTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAAAGAGATTGTTATGAACTGACTAAAT
GACTATCTTATCCCTACCCGACATCTGGATCACGGGCAACGCGTT
Found at i:46612 original size:17 final size:18
Alignment explanation
Indices: 46590--46705 Score: 107
Period size: 17 Copynumber: 6.5 Consensus size: 18
46580 GCTCTCTTGC
46590 GATAGAGTGCTTTGA-GT
1 GATAGAGTGCTTTGACGT
*
46607 GATAGAGTGCTTTGACTTGC
1 GATAGAGTGCTTTGAC--GT
46627 GATAGAGTGCTTTGA-GT
1 GATAGAGTGCTTTGACGT
* *
46644 GAGAGAGTGCTTTGACTT
1 GATAGAGTGCTTTGACGT
* *
46662 GCGTGCGAGTGCTTTGACGT
1 G-AT-AGAGTGCTTTGACGT
*
46682 G--CGAGTGCTTTGA-GT
1 GATAGAGTGCTTTGACGT
46697 GATAGAGTG
1 GATAGAGTG
46706 TGCTTTGCCC
Statistics
Matches: 82, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
15 3 0.04
16 12 0.15
17 35 0.43
18 2 0.02
20 30 0.37
ACGTcount: A:0.20, C:0.11, G:0.36, T:0.33
Consensus pattern (18 bp):
GATAGAGTGCTTTGACGT
Left flanking sequence: Indices 46090 -- 46589
CTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAACGTAGATAGAGGGCTGGGCTGGCT
CCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCGAAGAG
GCGGAGTAAATAGCGAAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATTGATGG
AAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACTCTTGC
GAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAA
CTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGA
GTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGC
Right flanking sequence: Indices 46706 -- 47205
TGCTTTGCCCTACGGTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGCGAAGTTCCGGT
TCTCACTTTGCCCGACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGTAGTTTCATTAT
TGGACCGCTCATGGCTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCTCATCTATGAAA
GATTCTTTATCCCCGTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAAAGAGATTGTTA
TGAACTGACTAAATGACTATCTTATCCCTACCCGACATCTGGATCACGGGCAACGCGTTCCCTTC
CATCCAATCAAGAAGTACGCCGCCCTCCTTCTTCTTCTGGAACCCATTGAGGGGGCCCCGGCCCG
GGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTGTAAATCTGTTGAAGGTTTTCTACGT
AGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGACTTCAGAGAAA
Found at i:46632 original size:20 final size:20
Alignment explanation
Indices: 46585--46685 Score: 99
Period size: 20 Copynumber: 5.3 Consensus size: 20
46575 GCAAAGCTCT
46585 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
46605 ---GTGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
46622 CTTGCGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
* *
46642 ---GTGAGAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGA
*
46659 CTTGCG-TGCGAGTGCTTTGA
1 CTTGCGAT-AGAGTGCTTTGA
*
46679 CGTGCGA
1 CTTGCGA
46686 GTGCTTTGAG
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
17 31 0.48
20 34 0.52
ACGTcount: A:0.19, C:0.14, G:0.35, T:0.33
Consensus pattern (20 bp):
CTTGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 46085 -- 46584
GGCCTCTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAACGTAGATAGAGGGCTGGGC
TGGCTCCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCG
AAGAGGCGGAGTAAATAGCGAAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATT
GATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACT
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGC
TTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG
TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
TGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 46686 -- 47185
GTGCTTTGAGTGATAGAGTGTGCTTTGCCCTACGGTTCACTTTGCGAGTGTCGGGATAACCTTAG
AAAGTCCGCGAAGTTCCGGTTCTCACTTTGCCCGACGTCTTAGGAAGTTTCCGTGGTTGGTGGTG
GAAAGAAGTAGTTTCATTATTGGACCGCTCATGGCTCCGTCGGCCGGCAGAAGCGTCATTCATAG
ATTCATCCTCATCTATGAAAGATTCTTTATCCCCGTTCCGCCTTCCGGAGACTTTGCTTCCCACC
TTGCTTTAAAGAGATTGTTATGAACTGACTAAATGACTATCTTATCCCTACCCGACATCTGGATC
ACGGGCAACGCGTTCCCTTCCATCCAATCAAGAAGTACGCCGCCCTCCTTCTTCTTCTGGAACCC
ATTGAGGGGGCCCCGGCCCGGGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTGTAAAT
CTGTTGAAGGTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCACT
Found at i:46635 original size:37 final size:36
Alignment explanation
Indices: 46585--46694 Score: 152
Period size: 37 Copynumber: 3.0 Consensus size: 36
46575 GCAAAGCTCT
46585 CTTGCGATAGAGTGCTTTGAGTGATAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGAGTGA-AGAGTGCTTTGA
46622 CTTGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGA
1 CTTGCGATAGAGTGCTTTGAGTGA-AGAGTGCTTTGA
* *
46659 CTTGCG-TGCGAGTGCTTTGACGTG-CGAGTGCTTTGA
1 CTTGCGAT-AGAGTGCTTTGA-GTGAAGAGTGCTTTGA
46695 GTGATAGAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
36 12 0.18
37 53 0.78
38 3 0.04
ACGTcount: A:0.18, C:0.14, G:0.35, T:0.34
Consensus pattern (36 bp):
CTTGCGATAGAGTGCTTTGAGTGAAGAGTGCTTTGA
Left flanking sequence: Indices 46085 -- 46584
GGCCTCTCCTTATTCATTCTATAGGGCGGGGCTGCGGACCAACCAACGTAGATAGAGGGCTGGGC
TGGCTCCGCCATCGAACACTCCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCG
AAGAGGCGGAGTAAATAGCGAAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATT
GATGGAAGGGTCGCGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACT
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGC
TTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG
TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTT
TGACTTGCGAGCGCTTGAACTTAATGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 46695 -- 47194
GTGATAGAGTGTGCTTTGCCCTACGGTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGC
GAAGTTCCGGTTCTCACTTTGCCCGACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGT
AGTTTCATTATTGGACCGCTCATGGCTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCT
CATCTATGAAAGATTCTTTATCCCCGTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAA
AGAGATTGTTATGAACTGACTAAATGACTATCTTATCCCTACCCGACATCTGGATCACGGGCAAC
GCGTTCCCTTCCATCCAATCAAGAAGTACGCCGCCCTCCTTCTTCTTCTGGAACCCATTGAGGGG
GCCCCGGCCCGGGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTGTAAATCTGTTGAAG
GTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGA
Found at i:46684 original size:16 final size:16
Alignment explanation
Indices: 46663--46694 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
46653 CTTTGACTTG
46663 CGTGCGAGTGCTTTGA
1 CGTGCGAGTGCTTTGA
46679 CGTGCGAGTGCTTTGA
1 CGTGCGAGTGCTTTGA
46695 GTGATAGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.38, T:0.31
Consensus pattern (16 bp):
CGTGCGAGTGCTTTGA
Left flanking sequence: Indices 46163 -- 46662
GAACACTCCGCGGAGCATCTGGGGCGGAGAGCTGCTTAGCAGCTGCTTAGCGAAGAGGCGGAGTA
AATAGCGAAGCGAACGTCACGTCATGTCAATTGACGTCACGTCACGTCAATTGATGGAAGGGTCG
CGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCACTCTTGCGAGCGCTT
GAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
AAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTG
ACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCG
CTTGAACTTAATGCCCAAATGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGATAGAGTGCT
TTGACTTGCGATAGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTG
Right flanking sequence: Indices 46695 -- 47194
GTGATAGAGTGTGCTTTGCCCTACGGTTCACTTTGCGAGTGTCGGGATAACCTTAGAAAGTCCGC
GAAGTTCCGGTTCTCACTTTGCCCGACGTCTTAGGAAGTTTCCGTGGTTGGTGGTGGAAAGAAGT
AGTTTCATTATTGGACCGCTCATGGCTCCGTCGGCCGGCAGAAGCGTCATTCATAGATTCATCCT
CATCTATGAAAGATTCTTTATCCCCGTTCCGCCTTCCGGAGACTTTGCTTCCCACCTTGCTTTAA
AGAGATTGTTATGAACTGACTAAATGACTATCTTATCCCTACCCGACATCTGGATCACGGGCAAC
GCGTTCCCTTCCATCCAATCAAGAAGTACGCCGCCCTCCTTCTTCTTCTGGAACCCATTGAGGGG
GCCCCGGCCCGGGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTGTAAATCTGTTGAAG
GTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGA
Found at i:48311 original size:39 final size:40
Alignment explanation
Indices: 48203--48328 Score: 227
Period size: 40 Copynumber: 3.2 Consensus size: 40
48193 CACGTCACGA
48203 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
1 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
48243 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
1 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
* *
48283 GCAAAG-CCCTACGCTTTGCTTTGCGAGTGCGTGCTTTGT
1 GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
48322 GCAAAGC
1 GCAAAGC
48329 ACTCGCAAAG
Statistics
Matches: 83, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
39 37 0.45
40 46 0.55
ACGTcount: A:0.14, C:0.29, G:0.26, T:0.31
Consensus pattern (40 bp):
GCAAAGCCCCCACTCTTTGCTTTGCGAGTGCGTGCTTTGT
Left flanking sequence: Indices 47703 -- 48202
AGAATAGAAAAGGCTGCGAGTGACTTTCTCACAGCGAGTGTAGCCTACCCTTGCTCCACTGCGAG
TGCAGCCTACGCGGAGCGAGCTTTTGCGCTTTCTACATCACATAAACAACTCCGGCGAAGAGGAC
GCGCACTCCTGCTACGACGCCTACAACTGGAGCTACGCAAGCTGTAACTGCTGACGAAGAGATTG
GAGCGTAGAGGTCCACAGTGGACTACGCGAGGGCAGTTTCTTCTTTCTGCGATGGTTCCTCACTC
AAAGACGGTCGAGCGTAGGCGGGGGAGTGACGTAGGATACCACGTCTGTGTCAAGCCTACAACTG
TGACATGTGCTATGTCGAAAGCAACGGTTGCTTTCGACGCGTTGGTTGCATGAAAACCGACAGAG
AAAGCGGTAGCTTTGCTCGCATCCAATCTCGCTTCGCTTTGCTCTTGTAGGCAGAGTCTACACTC
TACGCTTCTACTCGCGATACAACGTCACGTCACGTCACGTCACGA
Right flanking sequence: Indices 48329 -- 48828
ACTCGCAAAGCCCTAACGCCATTCAAAGTAGCGAGTGCTTTGATCACAGGGCGGAACGAACGCGG
AAATCAGAGGTGGAACGTTCATCCGGAGCCTAGGCTTTTGAATGACTACCAGAACTAACCGTCAC
GAGCGTGGGAGAACGGAGAGGGGGAATGATACTGGGATGCTACCGGATCCTCTTTGGGAAGATGG
AACCATGTCAGCGAACACCTACTCCTTCCTATTCAAAGGGCGCTACTTCCATTCAAGTCAAGCGC
AAGCCCCACTTACTTACTATAAAAGCTAAGGTGGGGCTTGCGTACGGGCTTGCATACGAAGGGCT
TGCGACGGAAGTAGGGCGAACGGCATTCTGTTGTACTACTAACACTAGCTGTACGACAGTAGTTC
CGTAGCGCCTTTTTCATCAAATAGGCGAACAGCCGGCATTGCAAGCTTTTAGAGAAAGAGCCCCC
GCCCGTTTGAGTCGCCGGGAGCCGGAAAGAAAGCCGGCAGTTTGA
Found at i:52125 original size:17 final size:17
Alignment explanation
Indices: 52103--52136 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
52093 AAGATCAGGC
52103 TTCGCCTTAGTTACGCG
1 TTCGCCTTAGTTACGCG
52120 TTCGCCTTAGTTACGCG
1 TTCGCCTTAGTTACGCG
52137 AGGGTCCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.29, G:0.24, T:0.35
Consensus pattern (17 bp):
TTCGCCTTAGTTACGCG
Left flanking sequence: Indices 51603 -- 52102
TATGCGTATCAGTACTATCGTGTCATGTGGCACTTCACTCTTTCTATCGATGCAAATCACAGGGG
AAAGTCGGAATCAAAGGGAGCAGCGGTTTACGGATCGGTGCATGCATAAGGTTTTTGACTTTAGA
AAGAGGAACACAAAGAACCTTTTTCTAAGTGATTGGTTGGGACCATATGCTTTTCAAAAGAAAGC
GGAGAAAGAAGAACCTATCCCACATAATTCGATCGATCAAACGTCAGATTTGATGCCTGAAATTG
ACTTTTTTCTAAGTGATTGGTTGGGACCATATGCTTTTCAAAAGAAAGCGGAGAAAGAAGAATGA
TTGAGTTAGTAGCCAGTAGCCAGGAAAGGTGGGCTAGGTTCGGCTCATCACCCGCACCAAATGAA
AGCAGATCAAGATCAGGCTCATCGTCAAGCGTTGAACTAGTGGCGGATGGAGAGGAGGGAAAGCA
AGCCTTCGGGTTCGGGTTGAAAGTTGGAAATGCCCAAGATCAGGC
Right flanking sequence: Indices 52137 -- 52636
AGGGTCCTTCTGGTAGACATCACCTGCGCGCCATACCCACACACACGAGAGCGAATCGTCGTGCT
GTACGTGTAACGCCAATCTCGTTCAGTATCTCAACTAGGTCTGACGCCGCAAGCGCACCTATCGC
GTTAGCTACCAGCGCGAGAGAGATCGAAGAGGGGTTCCCTCTGAAGGAGCAATGGTTAGTCAAGC
CCAAGCCTTTCTTTGGTGAACGATCAGTATAGTCGATTTTGCTTGTTAGAGACATTTGAAAGAAA
AAGGAAAGTCCACGAAGAGTCAGACAGCCGAGGAGACCAAAGAGAAGAACCTGAGACTGGAACCA
AACTACGTCCCTGTCATCCAGCGGATCGCAGAAAGGAAACCACCTTGATTGACTTCCAAAGCCCC
TATTGATGCCGGCACCGCGCTCACCCCTAAATAGGGGAATAGATAGTGGCCCTTAAATGTGTATT
TCCCAGAGCCTGTCTCTCTCAGCGTGGGGGTCTGAATTGCTGCCT
Found at i:52865 original size:29 final size:29
Alignment explanation
Indices: 52788--52869 Score: 128
Period size: 30 Copynumber: 2.8 Consensus size: 29
52778 GGAGGCCATC
* *
52788 CGGCTGCCTTAAAGAACGGCGGATCTGTG
1 CGGCTGCCTTAAAGAACGGCAGATCAGTG
52817 CTGGCTGCCTTAAAGAACGGCAGATCAGTG
1 C-GGCTGCCTTAAAGAACGGCAGATCAGTG
*
52847 CGGCCGCCTTAAAGAACGGCAGA
1 CGGCTGCCTTAAAGAACGGCAGA
52870 CTGTAACACC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
29 22 0.45
30 27 0.55
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.17
Consensus pattern (29 bp):
CGGCTGCCTTAAAGAACGGCAGATCAGTG
Left flanking sequence: Indices 52288 -- 52787
GATCGAAGAGGGGTTCCCTCTGAAGGAGCAATGGTTAGTCAAGCCCAAGCCTTTCTTTGGTGAAC
GATCAGTATAGTCGATTTTGCTTGTTAGAGACATTTGAAAGAAAAAGGAAAGTCCACGAAGAGTC
AGACAGCCGAGGAGACCAAAGAGAAGAACCTGAGACTGGAACCAAACTACGTCCCTGTCATCCAG
CGGATCGCAGAAAGGAAACCACCTTGATTGACTTCCAAAGCCCCTATTGATGCCGGCACCGCGCT
CACCCCTAAATAGGGGAATAGATAGTGGCCCTTAAATGTGTATTTCCCAGAGCCTGTCTCTCTCA
GCGTGGGGGTCTGAATTGCTGCCTTCTCGAAAAGGTCAATTTCAAGAAACCTACCGTAAGGGTAG
GGTGAAGCGCTCGCCCCCTCGAGCTGTTAGAAGTTTGGCCTGTTTCAAAAGCAGGTTGTTGAAGG
GAGTTCCACTAAAGTGTTCCAGGGTCAGGCTGGGGGGAGGCCATC
Right flanking sequence: Indices 52870 -- 53369
CTGTAACACCGGCAGGAACGGCGATCCTGATCAGTGCGAAATTCACTCTCCCAAACAATGATGGA
AACTCAAACCCAATCATTCTTCTGAACCACATTTCCTACCTGAGACCTTATCTAAGCGTCGGAAA
GAGGTTGTTTTTTCGTAGGTAATCTTTCATTGCCTGAACGTCGCCCTTTCAGACATGAAAGATTC
CCGTTCCTTCCCGTGGCTATCCATTAGACCCGGAAGCGAACCCATGAAGTTCAGAACCAGCCGAG
AATACGGGGAAGAGGACAGATCAAGAATGTCATATATAGGAGGAGCTAGATCAGTTCCCGATGAA
AAAGTCAGAATTGCCTCAACCAAAATGGCAGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTA
TCGATTGGGTATAAGTGAGAACATCAAGATGAATGAGTTAACTAAGTATCAGATCGACCTTTTGG
AACAAGTGATAGGTCAAGATCATGTTGTTCATTGGGAATTGAAGA
Found at i:53823 original size:5 final size:5
Alignment explanation
Indices: 53815--53848 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
53805 TTTGCCCAAT
*
53815 GTCAT GTCAC GTCAC GTCAC GTCAC GTCAC GTCA
1 GTCAC GTCAC GTCAC GTCAC GTCAC GTCAC GTCA
53849 ATTGATGAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.24
Consensus pattern (5 bp):
GTCAC
Left flanking sequence: Indices 53315 -- 53814
GACCTTTTGGAACAAGTGATAGGTCAAGATCATGTTGTTCATTGGGAATTGAAGAGGGGAGAACG
AGCAGACATCGAACGATTAATTTCGATTTCTCGTTATCGCGGAATTCGTCATCAAGATGGTTCGC
CCTTACGCGGTCAACGAACTCATACTAATGCTAGGACAGCTCGCAAAAATCTTTCTTAAGAATGA
ATGAACATTATCAAAATGGAAGCTGGGACTGATCACTTAGTGAGGAAGAGAGAGAAAAAGGAAAG
GGGGTAGAGGTTGGGAATGGAATGTCAGATGAGCGGTTCATGCCTTAATGATAATGAATTTTTCA
CTCTTCCTTGTTGCTAGCCTAAGCCAAAAAGGTATGAACGAAGTGACGGGCCCGCGGAGCGTGGT
AGTAAAGGCGATCCTCTTCTCTTAGCGTGCACAGCTTGCTTGCATGCCGCCTTAGGCACATCTCT
CTTTCTTCACGTCACGCAAAAAGCACTCGCAAAGCTTTGCCCAAT
Right flanking sequence: Indices 53849 -- 54348
ATTGATGAGCAACCACTTGATACGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGCTCAACGTC
GCGAGCAAAGTGAAACGGAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCAAAGCTAAACGAGCA
AAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
CTTGCGATAGAGTTCTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTGACGTTG
GCCTAGCCTAGTCAGTCTTTGATTTTAGTAATTATATAAGATAAGCAATGGTGTATCAGCAATTT
TGTAGTGGCCGCACGGTACGTACGGTGGAGGGTGTGACGGCGTTCAGAACCAGTTTAAGTGAATG
AAGACGAAGGAACGAAGAAGTAAGGAAATGAGACGACTCTTTCTTTCACTATTTCATAAACGGAT
CTTCCCCTCCACACTAATCACGAGTTTTTATCCATTCCTCTCGTA
Found at i:53899 original size:25 final size:24
Alignment explanation
Indices: 53871--53948 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 24
53861 CCACTTGATA
53871 CGAGCAAAGCTCAACAGAAGGGTCG
1 CGAGCAAAGCTCAAC-GAAGGGTCG
53896 CGAGCAAAGCTCAAC-----GTCG
1 CGAGCAAAGCTCAACGAAGGGTCG
*
53915 CGAGCAAAG-TGAAACGGAAGGGTCG
1 CGAGCAAAGCT-CAAC-GAAGGGTCG
53940 CGAGCAAAG
1 CGAGCAAAG
53949 TGAAACGTCG
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
18 1 0.02
19 16 0.36
25 28 0.62
ACGTcount: A:0.36, C:0.23, G:0.33, T:0.08
Consensus pattern (24 bp):
CGAGCAAAGCTCAACGAAGGGTCG
Left flanking sequence: Indices 53371 -- 53870
GGGAGAACGAGCAGACATCGAACGATTAATTTCGATTTCTCGTTATCGCGGAATTCGTCATCAAG
ATGGTTCGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACAGCTCGCAAAAATCTTTCT
TAAGAATGAATGAACATTATCAAAATGGAAGCTGGGACTGATCACTTAGTGAGGAAGAGAGAGAA
AAAGGAAAGGGGGTAGAGGTTGGGAATGGAATGTCAGATGAGCGGTTCATGCCTTAATGATAATG
AATTTTTCACTCTTCCTTGTTGCTAGCCTAAGCCAAAAAGGTATGAACGAAGTGACGGGCCCGCG
GAGCGTGGTAGTAAAGGCGATCCTCTTCTCTTAGCGTGCACAGCTTGCTTGCATGCCGCCTTAGG
CACATCTCTCTTTCTTCACGTCACGCAAAAAGCACTCGCAAAGCTTTGCCCAATGTCATGTCACG
TCACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATA
Right flanking sequence: Indices 53949 -- 54448
TGAAACGTCGCGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTT
AATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGATAGAGTTCTTTTCACGCTTTGCGAGTGC
TTTGTGGGCTTTGCTCATGACGTGACGTTGGCCTAGCCTAGTCAGTCTTTGATTTTAGTAATTAT
ATAAGATAAGCAATGGTGTATCAGCAATTTTGTAGTGGCCGCACGGTACGTACGGTGGAGGGTGT
GACGGCGTTCAGAACCAGTTTAAGTGAATGAAGACGAAGGAACGAAGAAGTAAGGAAATGAGACG
ACTCTTTCTTTCACTATTTCATAAACGGATCTTCCCCTCCACACTAATCACGAGTTTTTATCCAT
TCCTCTCGTATATCGTCGTCACGCCCTTAATGATAGGTTTTGAAAAAGACTTTTCATGTCATTCC
CATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCCC
Found at i:53920 original size:44 final size:44
Alignment explanation
Indices: 53871--53992 Score: 149
Period size: 44 Copynumber: 2.7 Consensus size: 44
53861 CCACTTGATA
* *
53871 CGAGCAAAGCTCAACAGAAGGGTCGCGAGCAAAGCT-CAACGTCG
1 CGAGCAAAGCTAAACAGAAGGGTCGCGAGCAAAG-TGAAACGTCG
*
53915 CGAGCAAAG-TGAAACGGAAGGGTCGCGAGCAAAGTGAAACGTCG
1 CGAGCAAAGCT-AAACAGAAGGGTCGCGAGCAAAGTGAAACGTCG
*
53959 CGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCA
1 CGAGCAAAGCTAAAC-AG--AAGGGTCGCGAGCA
53993 CTCTTGCGAG
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
43 2 0.03
44 50 0.75
45 2 0.03
47 13 0.19
ACGTcount: A:0.36, C:0.24, G:0.32, T:0.08
Consensus pattern (44 bp):
CGAGCAAAGCTAAACAGAAGGGTCGCGAGCAAAGTGAAACGTCG
Left flanking sequence: Indices 53371 -- 53870
GGGAGAACGAGCAGACATCGAACGATTAATTTCGATTTCTCGTTATCGCGGAATTCGTCATCAAG
ATGGTTCGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACAGCTCGCAAAAATCTTTCT
TAAGAATGAATGAACATTATCAAAATGGAAGCTGGGACTGATCACTTAGTGAGGAAGAGAGAGAA
AAAGGAAAGGGGGTAGAGGTTGGGAATGGAATGTCAGATGAGCGGTTCATGCCTTAATGATAATG
AATTTTTCACTCTTCCTTGTTGCTAGCCTAAGCCAAAAAGGTATGAACGAAGTGACGGGCCCGCG
GAGCGTGGTAGTAAAGGCGATCCTCTTCTCTTAGCGTGCACAGCTTGCTTGCATGCCGCCTTAGG
CACATCTCTCTTTCTTCACGTCACGCAAAAAGCACTCGCAAAGCTTTGCCCAATGTCATGTCACG
TCACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATA
Right flanking sequence: Indices 53993 -- 54492
CTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGATAGAGTT
CTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTGACGTTGGCCTAGCCTAGTCA
GTCTTTGATTTTAGTAATTATATAAGATAAGCAATGGTGTATCAGCAATTTTGTAGTGGCCGCAC
GGTACGTACGGTGGAGGGTGTGACGGCGTTCAGAACCAGTTTAAGTGAATGAAGACGAAGGAACG
AAGAAGTAAGGAAATGAGACGACTCTTTCTTTCACTATTTCATAAACGGATCTTCCCCTCCACAC
TAATCACGAGTTTTTATCCATTCCTCTCGTATATCGTCGTCACGCCCTTAATGATAGGTTTTGAA
AAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGATCCCTCCGTTGTTTCCTTTTCCTCC
CTCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATC
Found at i:53974 original size:19 final size:19
Alignment explanation
Indices: 53892--53967 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 19
53882 CAACAGAAGG
*
53892 GTCGCGAGCAAAGCT-CAAC
1 GTCGCGAGCAAAG-TGAAAC
53911 GTCGCGAGCAAAGTGAAAC
1 GTCGCGAGCAAAGTGAAAC
53930 GGAAGGGTCGCGAGCAAAGTGAAAC
1 ------GTCGCGAGCAAAGTGAAAC
53955 GTCGCGAGCAAAG
1 GTCGCGAGCAAAG
53968 CTAAACGAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
18 1 0.02
19 29 0.59
25 19 0.39
ACGTcount: A:0.34, C:0.22, G:0.34, T:0.09
Consensus pattern (19 bp):
GTCGCGAGCAAAGTGAAAC
Left flanking sequence: Indices 53392 -- 53891
ACGATTAATTTCGATTTCTCGTTATCGCGGAATTCGTCATCAAGATGGTTCGCCCTTACGCGGTC
AACGAACTCATACTAATGCTAGGACAGCTCGCAAAAATCTTTCTTAAGAATGAATGAACATTATC
AAAATGGAAGCTGGGACTGATCACTTAGTGAGGAAGAGAGAGAAAAAGGAAAGGGGGTAGAGGTT
GGGAATGGAATGTCAGATGAGCGGTTCATGCCTTAATGATAATGAATTTTTCACTCTTCCTTGTT
GCTAGCCTAAGCCAAAAAGGTATGAACGAAGTGACGGGCCCGCGGAGCGTGGTAGTAAAGGCGAT
CCTCTTCTCTTAGCGTGCACAGCTTGCTTGCATGCCGCCTTAGGCACATCTCTCTTTCTTCACGT
CACGCAAAAAGCACTCGCAAAGCTTTGCCCAATGTCATGTCACGTCACGTCACGTCACGTCACGT
CAATTGATGAGCAACCACTTGATACGAGCAAAGCTCAACAGAAGG
Right flanking sequence: Indices 53968 -- 54467
CTAAACGAGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATA
GAGTGCTTTGACTTGCGATAGAGTTCTTTTCACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATG
ACGTGACGTTGGCCTAGCCTAGTCAGTCTTTGATTTTAGTAATTATATAAGATAAGCAATGGTGT
ATCAGCAATTTTGTAGTGGCCGCACGGTACGTACGGTGGAGGGTGTGACGGCGTTCAGAACCAGT
TTAAGTGAATGAAGACGAAGGAACGAAGAAGTAAGGAAATGAGACGACTCTTTCTTTCACTATTT
CATAAACGGATCTTCCCCTCCACACTAATCACGAGTTTTTATCCATTCCTCTCGTATATCGTCGT
CACGCCCTTAATGATAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCCGATTCGGA
TCCCTCCGTTGTTTCCTTTTCCTCCCTCACCTTTTCCTCGAAATG
Found at i:56762 original size:49 final size:52
Alignment explanation
Indices: 56635--56773 Score: 239
Period size: 54 Copynumber: 2.7 Consensus size: 52
56625 CACTAAAAGC
56635 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATAT
1 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTC-C-ATAT
56689 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACT-C-TAT
1 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCCATAT
56739 -CGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
1 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAG
56774 AGTGCTCGCG
Statistics
Matches: 85, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
49 35 0.41
50 3 0.04
52 1 0.01
54 46 0.54
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (52 bp):
ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCCATAT
Left flanking sequence: Indices 56135 -- 56634
AAGCCTATGACCGTGTGGTCATAAAGAAGACACTCACTTGTTTCCACCCGCAGTGGATTGAGCGC
ATAATGACTTGTGTCTCCACAGCTTCCTTTTCTGTGCTTCTTAATGGAGAACCGGGAGACCTCTT
CTTTAGCAGCAGGGGATTAAGGCAAGGCGACCCCATTTCACCTTACCTATTCCTCCTTGTTATGG
AGAGGCTTTATCGTAGACTTGCTTGGGCTGTCGAGTCTAAGGAGATTCATATTCCCCCGTTCCCG
GCGAGGTACTTCTATCTCTCACCTATTCTTCGCTGATGATGTTTTGCTGTTTTGTCAAGCCAATT
GGCGTACCATAACCAAGCTGGCCAACATCCTATCTTCATTTACGAGTAGCTCTTCCATTCAAAGC
ACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAGAGCTTTG
CACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGC
Right flanking sequence: Indices 56774 -- 57273
AGTGCTCGCGACGCTTTGCTCGTTTAGCTTTGCTCGCGACGTTTCACTTTGCTCGCGACCCTTCC
GTTTCACTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTTCTGTTGAGCTTTGCTCCCTCCCG
ACCCTTCCGAATAGTTTCCATTTATTGACTATTCTTTTTTCGACTAATCCCTGTGCAATGAATGA
AGAGTCAAATGCTTTGGCAATTCCTCGTGTAGGTCTTTTTAGTGAATAGTAACAAACAGTTAGCT
AGCGTAGTTGATCTTGGAAAGCTCCGATAGCCTACCTACGATGTCTTCCGCATGGATGGAATATA
CTTGTTGATTGACTTTATTAGCTTGGTTGGCTCGGAGGGCCCGGGGAGGATCCGGAGAACAAATA
GCAACGGAAACTCCCGCCTTTACCTATGCTGCTAGGTTTAGTGAATAGTAACAAACAGTTAGCTA
GCGTAGTTGATCTTGGAAATGGTGCCTTTACTACGGAAACGACTG
Found at i:56823 original size:19 final size:19
Alignment explanation
Indices: 56801--56876 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 19
56791 GCTCGTTTAG
56801 CTTTGCTCGCGACGTTTCA
1 CTTTGCTCGCGACGTTTCA
56820 CTTTGCTCGCGACCCTTCCGTTTCA
1 CTTTGCTCGCGA------CGTTTCA
*
56845 CTTTGCTCGCGACG-TTGA
1 CTTTGCTCGCGACGTTTCA
56863 GCTTTGCTCGCGAC
1 -CTTTGCTCGCGAC
56877 CCTTCTGTTG
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
18 3 0.06
19 27 0.55
25 19 0.39
ACGTcount: A:0.09, C:0.34, G:0.22, T:0.34
Consensus pattern (19 bp):
CTTTGCTCGCGACGTTTCA
Left flanking sequence: Indices 56301 -- 56800
TTCACCTTACCTATTCCTCCTTGTTATGGAGAGGCTTTATCGTAGACTTGCTTGGGCTGTCGAGT
CTAAGGAGATTCATATTCCCCCGTTCCCGGCGAGGTACTTCTATCTCTCACCTATTCTTCGCTGA
TGATGTTTTGCTGTTTTGTCAAGCCAATTGGCGTACCATAACCAAGCTGGCCAACATCCTATCTT
CATTTACGAGTAGCTCTTCCATTCAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAG
CACTCGCACTATAAGGCAAGAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCAC
ACTAAAAGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATAC
GCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTA
AGTTCAAGCGCTCGCAAGAGTGCTCGCGACGCTTTGCTCGTTTAG
Right flanking sequence: Indices 56877 -- 57376
CCTTCTGTTGAGCTTTGCTCCCTCCCGACCCTTCCGAATAGTTTCCATTTATTGACTATTCTTTT
TTCGACTAATCCCTGTGCAATGAATGAAGAGTCAAATGCTTTGGCAATTCCTCGTGTAGGTCTTT
TTAGTGAATAGTAACAAACAGTTAGCTAGCGTAGTTGATCTTGGAAAGCTCCGATAGCCTACCTA
CGATGTCTTCCGCATGGATGGAATATACTTGTTGATTGACTTTATTAGCTTGGTTGGCTCGGAGG
GCCCGGGGAGGATCCGGAGAACAAATAGCAACGGAAACTCCCGCCTTTACCTATGCTGCTAGGTT
TAGTGAATAGTAACAAACAGTTAGCTAGCGTAGTTGATCTTGGAAATGGTGCCTTTACTACGGAA
ACGACTGCTTTTGGTTCTGATGCGGGTGGTGCTTCAACTCGATCAATTTCATGATATGGAAGTCA
AAGTGATGCTTTCGCTGATGGGATCGGTTCTCTAGGAAAACTGCC
Found at i:56892 original size:25 final size:24
Alignment explanation
Indices: 56820--56896 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 24
56810 CGACGTTTCA
*
56820 CTTTGCTCGCGACCCTTCCGTTTCA-
1 CTTTGCTCGCGACCCTT-CG-TTGAG
56845 CTTTGCTCGCGA-----CGTTGAG
1 CTTTGCTCGCGACCCTTCGTTGAG
56864 CTTTGCTCGCGACCCTTCTGTTGAG
1 CTTTGCTCGCGACCCTTC-GTTGAG
56889 CTTTGCTC
1 CTTTGCTC
56897 CCTCCCGACC
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
18 3 0.07
19 14 0.32
24 1 0.02
25 26 0.59
ACGTcount: A:0.08, C:0.34, G:0.22, T:0.36
Consensus pattern (24 bp):
CTTTGCTCGCGACCCTTCGTTGAG
Left flanking sequence: Indices 56320 -- 56819
CTTGTTATGGAGAGGCTTTATCGTAGACTTGCTTGGGCTGTCGAGTCTAAGGAGATTCATATTCC
CCCGTTCCCGGCGAGGTACTTCTATCTCTCACCTATTCTTCGCTGATGATGTTTTGCTGTTTTGT
CAAGCCAATTGGCGTACCATAACCAAGCTGGCCAACATCCTATCTTCATTTACGAGTAGCTCTTC
CATTCAAAGCACTCTATCGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAA
GAGAGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCGCACACTAAAAGCACGCGATGCT
TTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGT
TCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGA
GTGCTCGCGACGCTTTGCTCGTTTAGCTTTGCTCGCGACGTTTCA
Right flanking sequence: Indices 56897 -- 57396
CCTCCCGACCCTTCCGAATAGTTTCCATTTATTGACTATTCTTTTTTCGACTAATCCCTGTGCAA
TGAATGAAGAGTCAAATGCTTTGGCAATTCCTCGTGTAGGTCTTTTTAGTGAATAGTAACAAACA
GTTAGCTAGCGTAGTTGATCTTGGAAAGCTCCGATAGCCTACCTACGATGTCTTCCGCATGGATG
GAATATACTTGTTGATTGACTTTATTAGCTTGGTTGGCTCGGAGGGCCCGGGGAGGATCCGGAGA
ACAAATAGCAACGGAAACTCCCGCCTTTACCTATGCTGCTAGGTTTAGTGAATAGTAACAAACAG
TTAGCTAGCGTAGTTGATCTTGGAAATGGTGCCTTTACTACGGAAACGACTGCTTTTGGTTCTGA
TGCGGGTGGTGCTTCAACTCGATCAATTTCATGATATGGAAGTCAAAGTGATGCTTTCGCTGATG
GGATCGGTTCTCTAGGAAAACTGCCTTTTCTTCTTCATCGCTTCT
Found at i:62834 original size:49 final size:48
Alignment explanation
Indices: 62762--62985 Score: 275
Period size: 49 Copynumber: 4.8 Consensus size: 48
62752 GCAAAGCTAT
**
62762 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCG-TAGAGTGCTTTGA
*
62811 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT-AGAGTGCTTTGA
** *** *
62860 CTTGCGAGCGCTTGAACTTAATGCATCGCGTATATTG-CGAGTGCTTTGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGC--ATCGCGTAGAGTGCTTTGA
62909 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC-----GTGC--TGA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTAGAGTGCTTTGA
62950 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
62986 GCTTTTAGTG
Statistics
Matches: 157, Mismatches: 13, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
41 37 0.24
43 4 0.03
47 2 0.01
48 1 0.01
49 110 0.70
51 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (48 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTAGAGTGCTTTGA
Left flanking sequence: Indices 62262 -- 62761
TAGTGAAGCGGAATGCGAAGCGTAGCTCTCTTTCTATAAGCTATCTATCTCTATCTAAGCGTCGC
TTACGGCTGCAACCAATACTAAGCTCTAAGCGAAGCTGCTTTGCTTAGCTTACTTAATATGCTTA
CCTGACGGCTTAGTCAGTCCTGAGCTATGCTTAGTAAGGCAGCCTAGTCAGATCGCTTAGTCAAG
TAAGGGAAGGAGAATAGGGTTCACCTATTGTATGTAGGGCTCGCAGGCCTTGTAGCGAGGAAGGA
AGACCGAGATTACGCCTGCGAGTGTTGCCTACGAGCGAAAGCGAAGTAAGCTAAAGAGCAAGGCT
TTTAGTCAACTAGGCGCCGCGCTCACTAGTTGCCAGAAACCTCTTTCTAGCCGGATTCTTTCCCA
TATTCGGTAGGTGGAGTTCTATCCAAGGAATAGGCGATCGTGGGTGTTATTCCTGCCCCAACGTC
ACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTAT
Right flanking sequence: Indices 62986 -- 63485
GCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCCCAAACGAGCAAAG
CTCTCTTGCGATAGAGTGCTTTGAGTGTGATATTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTT
GAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGAGAGAGTGCTTTGACTTGCGTGC
GAGTGCTTTGACGTGCGAGTGCTTTGAGCGATAGAGTGCTTTTAGTGAGAGAGTGCTTTGACTTG
CGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACGAGTCAAGAGATAGATAAATAGACACAT
CCCATTGCACTGATCGGGGGGCGCTCGTAGTGACTGAGGGGGTCGGAGACCAAGAAGTGAGTTAT
TTATACCAGACTTGCGATAGAGTGCTTTGACGAGTCAAGAGATAGATAAATCTTATGGCGTCATC
CAATCTCCTGGTCCCCGCGGAAAGGAAAAAGAATTTCACGTTCTT
Found at i:63094 original size:23 final size:21
Alignment explanation
Indices: 63064--63202 Score: 93
Period size: 20 Copynumber: 7.0 Consensus size: 21
63054 TCTTGCGATA
*
63064 GAGTGCTTTGAGTGTGATATTGC
1 GAGTGCTTTGAGTGTG--AGTGC
* *
63087 GAGTGCTTTGACT-TGCGTGC
1 GAGTGCTTTGAGTGTGAGTGC
63107 GAGTGCTTTGA--GT--GTGC
1 GAGTGCTTTGAGTGTGAGTGC
* *
63124 GAGTGCTTTGACT-TGCGTGC
1 GAGTGCTTTGAGTGTGAGTGC
*
63144 GAGTGCTTTGA--GTGA--GA
1 GAGTGCTTTGAGTGTGAGTGC
* *
63161 GAGTGCTTTGACT-TGCGTGC
1 GAGTGCTTTGAGTGTGAGTGC
*
63181 GAGTGCTTTGACGTGCGAGTGC
1 GAGTGCTTTGA-GTGTGAGTGC
63203 TTTGAGCGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
17 27 0.29
18 3 0.03
19 3 0.03
20 41 0.44
21 1 0.01
22 7 0.07
23 12 0.13
ACGTcount: A:0.14, C:0.15, G:0.37, T:0.34
Consensus pattern (21 bp):
GAGTGCTTTGAGTGTGAGTGC
Left flanking sequence: Indices 62564 -- 63063
GAAGTAAGCTAAAGAGCAAGGCTTTTAGTCAACTAGGCGCCGCGCTCACTAGTTGCCAGAAACCT
CTTTCTAGCCGGATTCTTTCCCATATTCGGTAGGTGGAGTTCTATCCAAGGAATAGGCGATCGTG
GGTGTTATTCCTGCCCCAACGTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGC
TATCTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTT
GAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCATCGC
GTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTG
CGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCG
TTTCACTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGATA
Right flanking sequence: Indices 63203 -- 63702
TTTGAGCGATAGAGTGCTTTTAGTGAGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCG
TGCGAGTGCTTTGACGAGTCAAGAGATAGATAAATAGACACATCCCATTGCACTGATCGGGGGGC
GCTCGTAGTGACTGAGGGGGTCGGAGACCAAGAAGTGAGTTATTTATACCAGACTTGCGATAGAG
TGCTTTGACGAGTCAAGAGATAGATAAATCTTATGGCGTCATCCAATCTCCTGGTCCCCGCGGAA
AGGAAAAAGAATTTCACGTTCTTCCTTTCGTTTTCGGGAAGGGAAGATTAGGGATATTTATTGCT
GCTTTCTCCAGACCTCCGGGAAAAGCATGAAAAAAAGGCTCGAATGGTTCCGTCACCCCTTTCAT
TCTGGTCTACGTTCTTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCCATTGAGGCCG
AACCTCAACCTGTGCTCGAGAGATAGCTGTCCATACACTGATAAG
Found at i:63109 original size:20 final size:20
Alignment explanation
Indices: 63084--63282 Score: 189
Period size: 20 Copynumber: 10.8 Consensus size: 20
63074 AGTGTGATAT
63084 TGCGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCG
*
63104 TGCGAGTGCTTTGA---GTG
1 TGCGAGTGCTTTGACTTGCG
63121 TGCGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCG
*
63141 TGCGAGTGCTTTGA---GTG
1 TGCGAGTGCTTTGACTTGCG
* *
63158 AGAGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCG
63178 TGCGAGTGCTTTGA----CG
1 TGCGAGTGCTTTGACTTGCG
63194 TGCGAGTGCTTTGA---GCG
1 TGCGAGTGCTTTGACTTGCG
* * *
63211 AT-AGAGTGCTTT---TAGTG
1 -TGCGAGTGCTTTGACTTGCG
* *
63228 AGAGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCG
63248 TGCGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCG
63268 TGCGAGTGCTTTGAC
1 TGCGAGTGCTTTGAC
63283 GAGTCAAGAG
Statistics
Matches: 150, Mismatches: 15, Indels: 28
0.78 0.08 0.15
Matches are distributed among these distances:
16 16 0.11
17 53 0.35
18 1 0.01
20 80 0.53
ACGTcount: A:0.14, C:0.16, G:0.36, T:0.34
Consensus pattern (20 bp):
TGCGAGTGCTTTGACTTGCG
Left flanking sequence: Indices 62584 -- 63083
GCTTTTAGTCAACTAGGCGCCGCGCTCACTAGTTGCCAGAAACCTCTTTCTAGCCGGATTCTTTC
CCATATTCGGTAGGTGGAGTTCTATCCAAGGAATAGGCGATCGTGGGTGTTATTCCTGCCCCAAC
GTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTTTCAC
TTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCG
CGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCATCGCGTATATTGCGAGTGCTTTGA
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGC
AAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCCC
AAACGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGTGATAT
Right flanking sequence: Indices 63283 -- 63782
GAGTCAAGAGATAGATAAATAGACACATCCCATTGCACTGATCGGGGGGCGCTCGTAGTGACTGA
GGGGGTCGGAGACCAAGAAGTGAGTTATTTATACCAGACTTGCGATAGAGTGCTTTGACGAGTCA
AGAGATAGATAAATCTTATGGCGTCATCCAATCTCCTGGTCCCCGCGGAAAGGAAAAAGAATTTC
ACGTTCTTCCTTTCGTTTTCGGGAAGGGAAGATTAGGGATATTTATTGCTGCTTTCTCCAGACCT
CCGGGAAAAGCATGAAAAAAAGGCTCGAATGGTTCCGTCACCCCTTTCATTCTGGTCTACGTTCT
TGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCCATTGAGGCCGAACCTCAACCTGTGC
TCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGTGG
TTCATTTATCAAAGAGTGATTGAATTTTGTCAACCTTTTTTTTCG
Found at i:63125 original size:37 final size:37
Alignment explanation
Indices: 63084--63282 Score: 255
Period size: 37 Copynumber: 5.4 Consensus size: 37
63074 AGTGTGATAT
63084 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
1 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
63121 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
1 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
* * *
63158 AGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA-CG
1 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
* *
63194 TGCGAGTGCTTTGA---GCGAT-AGAGTGCTTTTAGTG
1 TGCGAGTGCTTTGACTTGCG-TGCGAGTGCTTTGAGTG
* * *
63228 AGAGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCG
1 TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA---GTG
63268 TGCGAGTGCTTTGAC
1 TGCGAGTGCTTTGAC
63283 GAGTCAAGAG
Statistics
Matches: 138, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
33 13 0.09
34 14 0.10
36 14 0.10
37 82 0.59
40 15 0.11
ACGTcount: A:0.14, C:0.16, G:0.36, T:0.34
Consensus pattern (37 bp):
TGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTG
Left flanking sequence: Indices 62584 -- 63083
GCTTTTAGTCAACTAGGCGCCGCGCTCACTAGTTGCCAGAAACCTCTTTCTAGCCGGATTCTTTC
CCATATTCGGTAGGTGGAGTTCTATCCAAGGAATAGGCGATCGTGGGTGTTATTCCTGCCCCAAC
GTCACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTTTCAC
TTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCG
CGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCATCGCGTATATTGCGAGTGCTTTGA
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGC
AAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCCC
AAACGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGTGATAT
Right flanking sequence: Indices 63283 -- 63782
GAGTCAAGAGATAGATAAATAGACACATCCCATTGCACTGATCGGGGGGCGCTCGTAGTGACTGA
GGGGGTCGGAGACCAAGAAGTGAGTTATTTATACCAGACTTGCGATAGAGTGCTTTGACGAGTCA
AGAGATAGATAAATCTTATGGCGTCATCCAATCTCCTGGTCCCCGCGGAAAGGAAAAAGAATTTC
ACGTTCTTCCTTTCGTTTTCGGGAAGGGAAGATTAGGGATATTTATTGCTGCTTTCTCCAGACCT
CCGGGAAAAGCATGAAAAAAAGGCTCGAATGGTTCCGTCACCCCTTTCATTCTGGTCTACGTTCT
TGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCCATTGAGGCCGAACCTCAACCTGTGC
TCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGTGG
TTCATTTATCAAAGAGTGATTGAATTTTGTCAACCTTTTTTTTCG
Found at i:63245 original size:70 final size:72
Alignment explanation
Indices: 63087--63281 Score: 288
Period size: 70 Copynumber: 2.7 Consensus size: 72
63077 GTGATATTGC
* *
63087 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTT
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGA--TGCGTGAGAGTGCTT
63152 TGAGTGAGA
64 TGAGTGAGA
63161 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA-CGTGCGAGTGCTTTGA-GCGAT-AGAGTGCTTT
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGATGCG-TGAGAGTGCTTT
*
63223 TAGTGAGA
65 GAGTGAGA
63231 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGA
1 GAGTGCTTTGACTTGCGTGCGAGTGCTTTGA---GCGTGCGAGTGCTTTGA
63282 CGAGTCAAGA
Statistics
Matches: 113, Mismatches: 3, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
70 50 0.44
71 1 0.01
73 15 0.13
74 47 0.42
ACGTcount: A:0.14, C:0.15, G:0.36, T:0.34
Consensus pattern (72 bp):
GAGTGCTTTGACTTGCGTGCGAGTGCTTTGAGCGTGCGAGTGCTTTGATGCGTGAGAGTGCTTTG
AGTGAGA
Left flanking sequence: Indices 62587 -- 63086
TTTAGTCAACTAGGCGCCGCGCTCACTAGTTGCCAGAAACCTCTTTCTAGCCGGATTCTTTCCCA
TATTCGGTAGGTGGAGTTCTATCCAAGGAATAGGCGATCGTGGGTGTTATTCCTGCCCCAACGTC
ACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGCAAAGCTATCTTGCGAGCGCTTTCACTTA
ATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGT
GCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCATCGCGTATATTGCGAGTGCTTTGACTT
GCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAA
GCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCCCAAA
CGAGCAAAGCTCTCTTGCGATAGAGTGCTTTGAGTGTGATATTGC
Right flanking sequence: Indices 63282 -- 63781
CGAGTCAAGAGATAGATAAATAGACACATCCCATTGCACTGATCGGGGGGCGCTCGTAGTGACTG
AGGGGGTCGGAGACCAAGAAGTGAGTTATTTATACCAGACTTGCGATAGAGTGCTTTGACGAGTC
AAGAGATAGATAAATCTTATGGCGTCATCCAATCTCCTGGTCCCCGCGGAAAGGAAAAAGAATTT
CACGTTCTTCCTTTCGTTTTCGGGAAGGGAAGATTAGGGATATTTATTGCTGCTTTCTCCAGACC
TCCGGGAAAAGCATGAAAAAAAGGCTCGAATGGTTCCGTCACCCCTTTCATTCTGGTCTACGTTC
TTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCCATTGAGGCCGAACCTCAACCTGTG
CTCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGTG
GTTCATTTATCAAAGAGTGATTGAATTTTGTCAACCTTTTTTTTC
Found at i:67068 original size:17 final size:17
Alignment explanation
Indices: 67046--67114 Score: 102
Period size: 17 Copynumber: 3.9 Consensus size: 17
67036 GCTCTCTTGC
67046 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
*
67063 GTGCGAGTGCTTTGACTTGC
1 GTGCGAGTGCTTTGA---GT
67083 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
67100 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
67115 CTTGCGATAG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
17 31 0.66
20 16 0.34
ACGTcount: A:0.12, C:0.14, G:0.39, T:0.35
Consensus pattern (17 bp):
GTGCGAGTGCTTTGAGT
Left flanking sequence: Indices 66546 -- 67045
TTCGATTTAGCAAACCAATGCCTTAAGCCACTCAGCCATACCGGAAACCAAGTGGATCGGAATGG
GATGTGCCGGGTAGCCCGAAGGGCTATCTGATCCGATCCACAGCGTCCGGCGAATAGCAAGCGAG
AGATTGGAACCGGAGAGCTGTGGTGACTCGAGAGTAGGCAACGCGTTTCGCTTTCTGTGAAAGCG
GAACTCGCTGCCTACTCGTCAGTCACCCCGGAACGACGAAGCGGATGGAGGAGCGGAAGGAGGGA
CTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCTAGCTC
GTGCTGCAAACTCGCTCGCTTCGTCAAGCTCTTTACGAAAAGTCTCGTCTACACTATACGCTCGT
TGTTTAAGTTGACTCCGCGATACAACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGA
TACGAGCAAAGCCCAATTCTAACTATTCGAGCAAAGCTCTCTTGC
Right flanking sequence: Indices 67115 -- 67614
CTTGCGATAGAGTGCTTTGACTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTTTTCAC
GCTTTGCTCATCAAGTTCGGCTCCTCTTTCTTATTTCTTTCTTTTCTACGATAATCCAAGCAGCA
GCTCCACAAGTCTGCTCGGAACCGGTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCTCTTC
TTAGGTTGGTTGGCGTGGCGTTTGCCAGCCACTTTCGTAACCTACAGTGAATGAACCAACCGAAG
ATTTTGACCATGATCTATGGATTGTACACCTTTGTGTCTGGCTATGTATATGGATGTGCATAAAG
AAGGGACATCTCTCGACCTAAAGCACTCGCTTGACGCTACGAGCAAAGCCCACTGACGAGCAAAG
CCTTCCTGCGAGGCCACCATTAGTAGGGCAGCCGCGAAGCGAGTGCTTTAGGGTGGATGCGTGGA
CAAAAAGATGATATGCTCGCCTACGGAACTCCGAGAATTGGGCTA
Found at i:67091 original size:37 final size:37
Alignment explanation
Indices: 67041--67163 Score: 174
Period size: 37 Copynumber: 3.2 Consensus size: 37
67031 GCAAAGCTCT
67041 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
67078 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
* *
67115 CTTGCGATAGAGTGCTTTGACTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCG-T-GCGAG---TG-CTTTGAGTGTGCGAGTGCTTTGA
67158 CTTGCG
1 CTTGCG
67164 ATAGAGTGCT
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
37 43 0.55
38 1 0.01
39 3 0.04
42 2 0.03
43 29 0.37
ACGTcount: A:0.12, C:0.16, G:0.36, T:0.36
Consensus pattern (37 bp):
CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
Left flanking sequence: Indices 66541 -- 67040
TTTCTTTCGATTTAGCAAACCAATGCCTTAAGCCACTCAGCCATACCGGAAACCAAGTGGATCGG
AATGGGATGTGCCGGGTAGCCCGAAGGGCTATCTGATCCGATCCACAGCGTCCGGCGAATAGCAA
GCGAGAGATTGGAACCGGAGAGCTGTGGTGACTCGAGAGTAGGCAACGCGTTTCGCTTTCTGTGA
AAGCGGAACTCGCTGCCTACTCGTCAGTCACCCCGGAACGACGAAGCGGATGGAGGAGCGGAAGG
AGGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCT
AGCTCGTGCTGCAAACTCGCTCGCTTCGTCAAGCTCTTTACGAAAAGTCTCGTCTACACTATACG
CTCGTTGTTTAAGTTGACTCCGCGATACAACGTCACGTCACGTCACGTCAATTGATGAGCAACCA
CTTGATACGAGCAAAGCCCAATTCTAACTATTCGAGCAAAGCTCT
Right flanking sequence: Indices 67164 -- 67663
ATAGAGTGCTTTTCACGCTTTGCTCATCAAGTTCGGCTCCTCTTTCTTATTTCTTTCTTTTCTAC
GATAATCCAAGCAGCAGCTCCACAAGTCTGCTCGGAACCGGTCGATTCCTGAGCCATTCGTTCTC
CCGTCCACCTCTCTTCTTAGGTTGGTTGGCGTGGCGTTTGCCAGCCACTTTCGTAACCTACAGTG
AATGAACCAACCGAAGATTTTGACCATGATCTATGGATTGTACACCTTTGTGTCTGGCTATGTAT
ATGGATGTGCATAAAGAAGGGACATCTCTCGACCTAAAGCACTCGCTTGACGCTACGAGCAAAGC
CCACTGACGAGCAAAGCCTTCCTGCGAGGCCACCATTAGTAGGGCAGCCGCGAAGCGAGTGCTTT
AGGGTGGATGCGTGGACAAAAAGATGATATGCTCGCCTACGGAACTCCGAGAATTGGGCTATCCC
TCCAACCCCTACTTACCCATACTTCCTACTCGTTATGCCTATGGT
Found at i:67139 original size:43 final size:42
Alignment explanation
Indices: 67053--67175 Score: 184
Period size: 43 Copynumber: 3.0 Consensus size: 42
67043 TGCGTGCGAG
* *
67053 TGCTTTGAGTGTGCGAGTGCTTTGACTTGCG-T-GCGAG---
1 TGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
67090 TGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
1 TGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
67132 TGACTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
1 TG-CTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
67175 T
1 T
67176 TCACGCTTTG
Statistics
Matches: 78, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
37 31 0.40
38 1 0.01
39 3 0.04
42 2 0.03
43 41 0.53
ACGTcount: A:0.14, C:0.15, G:0.34, T:0.37
Consensus pattern (42 bp):
TGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAGAGTGCTT
Left flanking sequence: Indices 66553 -- 67052
TAGCAAACCAATGCCTTAAGCCACTCAGCCATACCGGAAACCAAGTGGATCGGAATGGGATGTGC
CGGGTAGCCCGAAGGGCTATCTGATCCGATCCACAGCGTCCGGCGAATAGCAAGCGAGAGATTGG
AACCGGAGAGCTGTGGTGACTCGAGAGTAGGCAACGCGTTTCGCTTTCTGTGAAAGCGGAACTCG
CTGCCTACTCGTCAGTCACCCCGGAACGACGAAGCGGATGGAGGAGCGGAAGGAGGGACTTGAAC
CCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCTAGCTCGTGCTGC
AAACTCGCTCGCTTCGTCAAGCTCTTTACGAAAAGTCTCGTCTACACTATACGCTCGTTGTTTAA
GTTGACTCCGCGATACAACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATACGAGC
AAAGCCCAATTCTAACTATTCGAGCAAAGCTCTCTTGCGTGCGAG
Right flanking sequence: Indices 67176 -- 67675
TCACGCTTTGCTCATCAAGTTCGGCTCCTCTTTCTTATTTCTTTCTTTTCTACGATAATCCAAGC
AGCAGCTCCACAAGTCTGCTCGGAACCGGTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCT
CTTCTTAGGTTGGTTGGCGTGGCGTTTGCCAGCCACTTTCGTAACCTACAGTGAATGAACCAACC
GAAGATTTTGACCATGATCTATGGATTGTACACCTTTGTGTCTGGCTATGTATATGGATGTGCAT
AAAGAAGGGACATCTCTCGACCTAAAGCACTCGCTTGACGCTACGAGCAAAGCCCACTGACGAGC
AAAGCCTTCCTGCGAGGCCACCATTAGTAGGGCAGCCGCGAAGCGAGTGCTTTAGGGTGGATGCG
TGGACAAAAAGATGATATGCTCGCCTACGGAACTCCGAGAATTGGGCTATCCCTCCAACCCCTAC
TTACCCATACTTCCTACTCGTTATGCCTATGGTTCTAAACGAAAG
Found at i:67154 original size:23 final size:23
Alignment explanation
Indices: 67092--67160 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
67082 CGTGCGAGTG
67092 CTTTGAGTGTGCGAGTGCTTTGA
1 CTTTGAGTGTGCGAGTGCTTTGA
* * *
67115 C-TTGCG-AT-AGAGTGCTTTGA
1 CTTTGAGTGTGCGAGTGCTTTGA
67135 CTTTGAGTGTGCGAGTGCTTTGA
1 CTTTGAGTGTGCGAGTGCTTTGA
67158 CTT
1 CTT
67161 GCGATAGAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 12 0.32
21 5 0.14
22 5 0.14
23 15 0.41
ACGTcount: A:0.14, C:0.14, G:0.32, T:0.39
Consensus pattern (23 bp):
CTTTGAGTGTGCGAGTGCTTTGA
Left flanking sequence: Indices 66592 -- 67091
ACCAAGTGGATCGGAATGGGATGTGCCGGGTAGCCCGAAGGGCTATCTGATCCGATCCACAGCGT
CCGGCGAATAGCAAGCGAGAGATTGGAACCGGAGAGCTGTGGTGACTCGAGAGTAGGCAACGCGT
TTCGCTTTCTGTGAAAGCGGAACTCGCTGCCTACTCGTCAGTCACCCCGGAACGACGAAGCGGAT
GGAGGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTA
AGCTATTTCCGCCTAGCTCGTGCTGCAAACTCGCTCGCTTCGTCAAGCTCTTTACGAAAAGTCTC
GTCTACACTATACGCTCGTTGTTTAAGTTGACTCCGCGATACAACGTCACGTCACGTCACGTCAA
TTGATGAGCAACCACTTGATACGAGCAAAGCCCAATTCTAACTATTCGAGCAAAGCTCTCTTGCG
TGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTG
Right flanking sequence: Indices 67161 -- 67660
GCGATAGAGTGCTTTTCACGCTTTGCTCATCAAGTTCGGCTCCTCTTTCTTATTTCTTTCTTTTC
TACGATAATCCAAGCAGCAGCTCCACAAGTCTGCTCGGAACCGGTCGATTCCTGAGCCATTCGTT
CTCCCGTCCACCTCTCTTCTTAGGTTGGTTGGCGTGGCGTTTGCCAGCCACTTTCGTAACCTACA
GTGAATGAACCAACCGAAGATTTTGACCATGATCTATGGATTGTACACCTTTGTGTCTGGCTATG
TATATGGATGTGCATAAAGAAGGGACATCTCTCGACCTAAAGCACTCGCTTGACGCTACGAGCAA
AGCCCACTGACGAGCAAAGCCTTCCTGCGAGGCCACCATTAGTAGGGCAGCCGCGAAGCGAGTGC
TTTAGGGTGGATGCGTGGACAAAAAGATGATATGCTCGCCTACGGAACTCCGAGAATTGGGCTAT
CCCTCCAACCCCTACTTACCCATACTTCCTACTCGTTATGCCTAT
Found at i:67172 original size:20 final size:19
Alignment explanation
Indices: 67067--67175 Score: 89
Period size: 20 Copynumber: 5.5 Consensus size: 19
67057 TTGAGTGTGC
*
67067 GAGTGCTTTGACTTGCGTGC
1 GAGTGCTTTGACTTGCGT-A
*
67087 GAGTGCTTTGAGTGTGC---
1 GAGTGCTTTGACT-TGCGTA
67104 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGACTTGCG-TA
* *
67124 GAGTGCTTTGACTTTGAGTGTGC
1 GAGTGCTTTGAC-TT--GCGT-A
67147 GAGTGCTTTGACTTGCGATA
1 GAGTGCTTTGACTTGCG-TA
67167 GAGTGCTTT
1 GAGTGCTTT
67176 TCACGCTTTG
Statistics
Matches: 73, Mismatches: 6, Indels: 20
0.74 0.06 0.20
Matches are distributed among these distances:
16 3 0.04
17 12 0.16
20 35 0.48
21 6 0.08
22 3 0.04
23 14 0.19
ACGTcount: A:0.15, C:0.15, G:0.34, T:0.37
Consensus pattern (19 bp):
GAGTGCTTTGACTTGCGTA
Left flanking sequence: Indices 66567 -- 67066
CTTAAGCCACTCAGCCATACCGGAAACCAAGTGGATCGGAATGGGATGTGCCGGGTAGCCCGAAG
GGCTATCTGATCCGATCCACAGCGTCCGGCGAATAGCAAGCGAGAGATTGGAACCGGAGAGCTGT
GGTGACTCGAGAGTAGGCAACGCGTTTCGCTTTCTGTGAAAGCGGAACTCGCTGCCTACTCGTCA
GTCACCCCGGAACGACGAAGCGGATGGAGGAGCGGAAGGAGGGACTTGAACCCTCAACCTCAGCC
TTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCTAGCTCGTGCTGCAAACTCGCTCGCTT
CGTCAAGCTCTTTACGAAAAGTCTCGTCTACACTATACGCTCGTTGTTTAAGTTGACTCCGCGAT
ACAACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATACGAGCAAAGCCCAATTCTA
ACTATTCGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGTGC
Right flanking sequence: Indices 67176 -- 67675
TCACGCTTTGCTCATCAAGTTCGGCTCCTCTTTCTTATTTCTTTCTTTTCTACGATAATCCAAGC
AGCAGCTCCACAAGTCTGCTCGGAACCGGTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCT
CTTCTTAGGTTGGTTGGCGTGGCGTTTGCCAGCCACTTTCGTAACCTACAGTGAATGAACCAACC
GAAGATTTTGACCATGATCTATGGATTGTACACCTTTGTGTCTGGCTATGTATATGGATGTGCAT
AAAGAAGGGACATCTCTCGACCTAAAGCACTCGCTTGACGCTACGAGCAAAGCCCACTGACGAGC
AAAGCCTTCCTGCGAGGCCACCATTAGTAGGGCAGCCGCGAAGCGAGTGCTTTAGGGTGGATGCG
TGGACAAAAAGATGATATGCTCGCCTACGGAACTCCGAGAATTGGGCTATCCCTCCAACCCCTAC
TTACCCATACTTCCTACTCGTTATGCCTATGGTTCTAAACGAAAG
Found at i:73111 original size:19 final size:19
Alignment explanation
Indices: 73087--73134 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
73077 AAGGCAAGAG
*
73087 TGCTCGCGACG-TTGAGCTT
1 TGCTCGCGACGTTTCA-CTT
73106 TGCTCGCGACGTTTCACTT
1 TGCTCGCGACGTTTCACTT
73125 TGCTCGCGAC
1 TGCTCGCGAC
73135 CCTTCCATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 24 0.89
20 3 0.11
ACGTcount: A:0.10, C:0.31, G:0.27, T:0.31
Consensus pattern (19 bp):
TGCTCGCGACGTTTCACTT
Left flanking sequence: Indices 72587 -- 73086
CAAGATGTGGCACACATCCATCGGTACCACGTCACAAAGCACCCCCTTGCTTCCAACTACCGAGG
TTAATCGGCACTCGGCACTGCCTTCTCACCCACAGCTCGTGTCCCTTCTGGAACCATCCGAGCTT
GTATGGGGGGTTCACACTTCATTCCCAACTTCTCTACGAGCTCCGTCGACGCCACATTCTCGGAA
CTACCTCCATCTATGATCATCTTGGCTCGCTTGTTGACTCCTCTGATCCCAATCCGAAACACAGC
CTTTCTTCTTCCAACGAGCAACTGGGGAGCAAAGCTTAAAAGAAAGGAGCAAAGCCTTTTTCGGG
TGGTCAAATTGAAAAGACGAATCTTTGATGAAGGCGCCAAAGCGAAGCGTTAGGGAACTCGCAAA
GCGAAGCAACGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCTATCGCAAG
TCAAAGCACTCGCACACTCAAAGCACTCGCACTATAAGGCAAGAG
Right flanking sequence: Indices 73135 -- 73634
CCTTCCATCAATTGACGTGACGTGACGTGACGTCAAAGTGACGTTGGGGAAGACTCGAATTCGTG
AAAGTGAAGCAAACCTAGCCCGACCCTCGGAAGAGAACAGCATCACAAGACTGGCAGAGCTTATA
CTTAACACAGAAGTGGAAGAGAAGAAGATCTTAACGCTAGCAGAGTGAAGAACAAATGACAAAAT
GGAAAACAGCAACCGATCTTGACCGTTCTTGGAAAGGCCTATGTGGGGCGATCTGGAGGAAGAGG
ATAGGATCGGCCCTATCCCCGGAAAAAAAGAGAATTGGCTATAGCAGGAAGGCAGGTTAGTTGGT
CATCTCCTTCCTGCACGGCAGCCAAACCAAAAAAGAGAATCTCATAAGGGCAGGATCTGGTATTT
GGATGTTCTCCCAAAATCCAATCTGGTGGTTTGCATCAAAGTTCACTTTCACTGGAGACCTCTTA
ATGAAGATGAGCTTTTCAGGCATGAAGGGATAAAGGAAGGGCTTG
Found at i:74000 original size:27 final size:27
Alignment explanation
Indices: 73969--74024 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
73959 ACAAGGCACC
73969 GTCTTTCACCTTTCTTGTTGAAGACGA
1 GTCTTTCACCTTTCTTGTTGAAGACGA
73996 GTCTTTCACCTTTCTTGTTGAAGACGA
1 GTCTTTCACCTTTCTTGTTGAAGACGA
74023 GT
1 GT
74025 ATACCGAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (27 bp):
GTCTTTCACCTTTCTTGTTGAAGACGA
Left flanking sequence: Indices 73469 -- 73968
CCTGCACGGCAGCCAAACCAAAAAAGAGAATCTCATAAGGGCAGGATCTGGTATTTGGATGTTCT
CCCAAAATCCAATCTGGTGGTTTGCATCAAAGTTCACTTTCACTGGAGACCTCTTAATGAAGATG
AGCTTTTCAGGCATGAAGGGATAAAGGAAGGGCTTGGACAACCTAATCGCATGGTGGTCTTACTG
CTATATTATATAGAAGGCCAGCAGAAGGACCTTCCCTAGCACTTTCTCGCTTATAGTTGTCCTCT
CTGCAAATCTGAATCTCCAACTAGACTCCATCTCTTCTTCGGCTGTACATGGAGTACGGAAATTG
TTGCGCCCCTTGTATTATATGAGTTGCGCGTGATCCGCTGTTTTTTCTTTTTTTCATTCGCAACG
GCATATGAGAAGGATCGGCATGCTGCTGCAGAGGTGATCGTATGAAAAGCAACCGATCCCGCGCA
TTTTTTTGTATGGTTCTTTTTTGGCCTTTTCTATTACAAGGCACC
Right flanking sequence: Indices 74025 -- 74524
ATACCGAAATCAAAAGGAAACTGAGAACCTTGGCTACGGTTAATGAAGGACTTTACTTAGTTTGG
GTCGCTATCTCGAGTTGGATTGGATCTCCTCTCGTATCGATCGCAACCCCAAATTTTCGGATCGA
TACGAGAGAGAGATCAGTAGTCTCGAGATCGGTATTGCAGAGCTAACTATTGAGCTAGGTGCCCT
CCCCTCGTGTCGTGCGTAGGAGAGTGGTTAGGAATAGCGAGTGAACTAGGTGTCGTCGTGCAGGG
CGAAGTGAATAGGTTCTGCTTGTTGTTTTGTCTCTGTTTGCTGTCTGTGCTATCTATATACCTAC
CTATCTATCTATCTATCTATCTTTGGTTTTCTCGAAACTCCTAATCTTGTATTATAGGAGTTTCG
GGGAATCGGTTGTTTTTGAGGCACTAGCAAAATGTTTCAAAAACACCCGATATCCCGACATTTTT
TGCAAGATCGGGTGCGGGGAATCGGTTTGTGTTGTCCGTTATTGA
Found at i:77699 original size:35 final size:35
Alignment explanation
Indices: 77660--77802 Score: 164
Period size: 35 Copynumber: 3.9 Consensus size: 35
77650 CGCGAGCACT
77660 CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGA
1 CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGA
77695 CTTGCGAGCGCTTAATGT-C-AAGCATCGCGTGCTGA
1 CTTGCGAGCGCTT--TGTGCAAAGCATCGCGTGCTGA
**
77730 CTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
1 CTTGCGAGCGCTTTGTGCAAAGCATCGC------GTGC--TGA
77773 CTTGCGAGCGCTTTGTGCAAAGCATCGCGT
1 CTTGCGAGCGCTTTGTGCAAAGCATCGCGT
77803 ATATTGCGAG
Statistics
Matches: 92, Mismatches: 4, Indels: 22
0.78 0.03 0.19
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 51 0.55
36 1 0.01
37 5 0.05
41 4 0.04
43 29 0.32
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.26
Consensus pattern (35 bp):
CTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGA
Left flanking sequence: Indices 77160 -- 77659
AAGTTCCCTCCTCCTCGTTCCCGAGAAGAGGAGCAGGACCAGGTGAGTAGGGATGCAGCTCCGTG
GATCGCTCGTCAGGCCTGATAGATGGCGGTATCACACCCTTCCCAATTGCATCCTCTTTCCACGA
GGACGAGCTTGATGCGCCTGAAGCCCCCGACTCCGCCCCTGTTGGTCAAACCATATGACCGAGAT
AGGGCGCGGCTTCGCTGGTTAGGAGCGCCCTCATAACGCAAACCATAGCCCAGGCCAGACCCCCT
TCACACCCCAGTCGGCAAAATAGGATTTGGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATT
GGATAATATGAAAATCAAAGCCCAGCCCTAAAAGGACAACATCAAAACTGAACATCGCGAGTCAA
AGTCAGAAGGCAACCGCTGAGATTCTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGG
AAGGGTCGGGAGCAAAGCTCAACAGAAGGGAGGGTCGCGAGCACT
Right flanking sequence: Indices 77803 -- 78302
ATATTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCT
TAATGTCAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCC
CAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCT
CAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAG
TGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTT
GCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGC
GCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTA
ATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGT
Found at i:77782 original size:43 final size:45
Alignment explanation
Indices: 77727--77913 Score: 184
Period size: 48 Copynumber: 4.3 Consensus size: 45
77717 CATCGCGTGC
77727 TGACTTGCGAGCGCTTAATGCAAAGCATCGCG-ATA-GAGTGCTT
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATATGAGTGCTT
**
77770 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATA-T--GAGTGCTT
**
77818 TGACTTGCGAGCGCTTTGTGCAAAGCATCGC--------GTGC--
1 TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATATGAGTGCTT
77853 TGACTTGCGAGCGCTTAATGTC-AAGCATCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTAATG-CAAAGCATCGCGTATA-T--GAGTGCTT
77901 TGACTTGCGAGCG
1 TGACTTGCGAGCG
77914 TTTCACTTTG
Statistics
Matches: 121, Mismatches: 4, Indels: 33
0.77 0.03 0.21
Matches are distributed among these distances:
35 27 0.22
36 1 0.01
37 4 0.03
43 30 0.25
44 3 0.02
46 4 0.03
48 52 0.43
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TGACTTGCGAGCGCTTAATGCAAAGCATCGCGTATATGAGTGCTT
Left flanking sequence: Indices 77227 -- 77726
TCGCTCGTCAGGCCTGATAGATGGCGGTATCACACCCTTCCCAATTGCATCCTCTTTCCACGAGG
ACGAGCTTGATGCGCCTGAAGCCCCCGACTCCGCCCCTGTTGGTCAAACCATATGACCGAGATAG
GGCGCGGCTTCGCTGGTTAGGAGCGCCCTCATAACGCAAACCATAGCCCAGGCCAGACCCCCTTC
ACACCCCAGTCGGCAAAATAGGATTTGGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATTGG
ATAATATGAAAATCAAAGCCCAGCCCTAAAAGGACAACATCAAAACTGAACATCGCGAGTCAAAG
TCAGAAGGCAACCGCTGAGATTCTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAA
GGGTCGGGAGCAAAGCTCAACAGAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGC
Right flanking sequence: Indices 77914 -- 78413
TTTCACTTTGTGCAAAGCCCAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCT
CAACGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGT
GCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTAT
ATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCG
AGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGAC
TTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTG
CAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTT
GAGCGATAGAGTGCTTTGACTTGCGAGTGCTTTGAGCGCGAGTGC
Found at i:77828 original size:48 final size:44
Alignment explanation
Indices: 77727--77850 Score: 187
Period size: 48 Copynumber: 2.8 Consensus size: 44
77717 CATCGCGTGC
**
77727 TGACTTGCGAGCGCTTAATGCAAAGCATCGCG-ATAGAGTGCTT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATAGAGTGCTT
77770 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATA----GAGTGCTT
77818 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGT
1 TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGT
77851 GCTGACTTGC
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
43 30 0.41
44 3 0.04
48 41 0.55
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (44 bp):
TGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATAGAGTGCTT
Left flanking sequence: Indices 77227 -- 77726
TCGCTCGTCAGGCCTGATAGATGGCGGTATCACACCCTTCCCAATTGCATCCTCTTTCCACGAGG
ACGAGCTTGATGCGCCTGAAGCCCCCGACTCCGCCCCTGTTGGTCAAACCATATGACCGAGATAG
GGCGCGGCTTCGCTGGTTAGGAGCGCCCTCATAACGCAAACCATAGCCCAGGCCAGACCCCCTTC
ACACCCCAGTCGGCAAAATAGGATTTGGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATTGG
ATAATATGAAAATCAAAGCCCAGCCCTAAAAGGACAACATCAAAACTGAACATCGCGAGTCAAAG
TCAGAAGGCAACCGCTGAGATTCTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAA
GGGTCGGGAGCAAAGCTCAACAGAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAG
CATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGC
Right flanking sequence: Indices 77851 -- 78350
GCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTT
TCACTTTGTGCAAAGCCCAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCA
ACGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGC
AAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATAT
TGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAG
TGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTT
GCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCA
AAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCG
Found at i:77860 original size:35 final size:34
Alignment explanation
Indices: 77818--77885 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 34
77808 GCGAGTGCTT
77818 TGACTTGCGAGCGCTT-TGTGCAAAGCATCGCGTGC
1 TGACTTGCGAGCGCTTATGT-C-AAGCATCGCGTGC
77853 TGACTTGCGAGCGCTTAATGTCAAGCATCGCGT
1 TGACTTGCGAGCGCTT-ATGTCAAGCATCGCGT
77886 ATATTGCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
35 27 0.87
36 1 0.03
37 3 0.10
ACGTcount: A:0.19, C:0.25, G:0.29, T:0.26
Consensus pattern (34 bp):
TGACTTGCGAGCGCTTATGTCAAGCATCGCGTGC
Left flanking sequence: Indices 77318 -- 77817
GACTCCGCCCCTGTTGGTCAAACCATATGACCGAGATAGGGCGCGGCTTCGCTGGTTAGGAGCGC
CCTCATAACGCAAACCATAGCCCAGGCCAGACCCCCTTCACACCCCAGTCGGCAAAATAGGATTT
GGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATTGGATAATATGAAAATCAAAGCCCAGCCC
TAAAAGGACAACATCAAAACTGAACATCGCGAGTCAAAGTCAGAAGGCAACCGCTGAGATTCTGA
CCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAAGGGTCGGGAGCAAAGCTCAACAGAAG
GGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTT
AATGTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGA
CTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTT
Right flanking sequence: Indices 77886 -- 78385
ATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAAGGGTCGGGA
GCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAAC
GTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCG
CTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTG
TGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAA
GCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGC
GAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGT
GCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTT
Found at i:77989 original size:19 final size:19
Alignment explanation
Indices: 77944--78002 Score: 100
Period size: 19 Copynumber: 3.1 Consensus size: 19
77934 AAACGGAAGG
77944 GTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCTCAA-C
*
77964 TTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
77983 GTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTCAAC
78002 G
1 G
78003 AGCAAAGCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.31, C:0.27, G:0.31, T:0.12
Consensus pattern (19 bp):
GTCGGGAGCAAAGCTCAAC
Left flanking sequence: Indices 77444 -- 77943
ATTTGGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATTGGATAATATGAAAATCAAAGCCCA
GCCCTAAAAGGACAACATCAAAACTGAACATCGCGAGTCAAAGTCAGAAGGCAACCGCTGAGATT
CTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAAGGGTCGGGAGCAAAGCTCAACA
GAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGC
GCTTAATGTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTT
TGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGC
TTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAAGG
Right flanking sequence: Indices 78003 -- 78502
AGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTT
TGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAG
CGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTG
AATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCA
AAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAAAGCTCT
CTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGACTTGC
GAGTGCTTTGAGCGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTT
TTCATAGTGATGAAAAACTGCAATCAATCCTTTCCCTTTGTCTTT
Found at i:78025 original size:19 final size:19
Alignment explanation
Indices: 77944--78025 Score: 75
Period size: 19 Copynumber: 4.5 Consensus size: 19
77934 AAACGGAAGG
*
77944 GTCGGGAGCAAAGCTCAACC
1 GTCGGGAGCAAAGCT-AAAC
* *
77964 TTCGGGAGCAAAGCTCAAC
1 GTCGGGAGCAAAGCTAAAC
*
77983 GTCGGGAGCAAAGCTCAA-
1 GTCGGGAGCAAAGCTAAAC
78001 --C--GAGCAAAGCTAAAC
1 GTCGGGAGCAAAGCTAAAC
*
78016 GTCGCGAGCA
1 GTCGGGAGCA
78026 CTCTTGCGAG
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
14 12 0.23
16 1 0.02
17 1 0.02
19 24 0.46
20 14 0.27
ACGTcount: A:0.33, C:0.27, G:0.29, T:0.11
Consensus pattern (19 bp):
GTCGGGAGCAAAGCTAAAC
Left flanking sequence: Indices 77444 -- 77943
ATTTGGAGAGACTTGCCGAGAAGCATAGCGGCTCTCCCATTGGATAATATGAAAATCAAAGCCCA
GCCCTAAAAGGACAACATCAAAACTGAACATCGCGAGTCAAAGTCAGAAGGCAACCGCTGAGATT
CTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAAGGGTCGGGAGCAAAGCTCAACA
GAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGC
GCTTAATGTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTT
TGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGC
TTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAAGG
Right flanking sequence: Indices 78026 -- 78525
CTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTA
ATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCT
CGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTA
TATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTG
ACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCG
TGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGACTTGCGAGTGCTTTGAGCGCGAGTGCTT
TGACTTGCGTGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTGATGAAAAACTGCAA
TCAATCCTTTCCCTTTGTCTTTACTACTCGATCGGAGGGCTTTGA
Found at i:78190 original size:59 final size:54
Alignment explanation
Indices: 78060--78299 Score: 310
Period size: 54 Copynumber: 4.4 Consensus size: 54
78050 CATCGCGATA
* **
78060 GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGC
1 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCGTATATTGC
78114 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGC
1 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAA-----GCCTCGCGTATATTGC
*
78173 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGC
1 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCGTATATTGC
** * ** *
78227 GAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGCATCGCG-----TGC
1 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCGTATATTGC
78276 GAGTGCTTTGACTTGCGAGCGCTT
1 GAGTGCTTTGACTTGCGAGCGCTT
78300 TGTGCAAAGC
Statistics
Matches: 172, Mismatches: 9, Indels: 15
0.88 0.05 0.08
Matches are distributed among these distances:
49 27 0.16
54 91 0.53
59 54 0.31
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (54 bp):
GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCGTATATTGC
Left flanking sequence: Indices 77560 -- 78059
CAACCGCTGAGATTCTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAAGGGTCGGG
AGCAAAGCTCAACAGAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGT
GCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCAT
CGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTG
ACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCG
TATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAAGGGTCGGG
AGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAA
CGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATA
Right flanking sequence: Indices 78300 -- 78799
TGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTG
CTTTGAGCGATAGAGTGCTTTGACTTGCGAGTGCTTTGAGCGCGAGTGCTTTGACTTGCGTGCGA
GTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTGATGAAAAACTGCAATCAATCCTTTCCCT
TTGTCTTTACTACTCGATCGGAGGGCTTTGATCAAGGTGTTATGAAAATAGTTAAGAAAGAGCTG
ACAAAGAGGAGATTGAGATGAATGAATCGAGAGCTCAGGCTTCACTAGTTGCTTGCACCCTTGCT
TGTGACCCTATGGGCAAAGAGTCCCCTCTTCATTCAGAGAGGTTGGGCGGTGGAGAGAACGTTTT
GCGATAGTTCCAGAGAGGAGCGGTGGGCGAGTGACGAGCATCTTTCGATCGATTCAAAGAAATGT
TCTTTTCATAACCATTAGCTAAAAGCTGTCTGTGATTCTAGAACA
Found at i:78244 original size:16 final size:16
Alignment explanation
Indices: 78223--78256 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
78213 ATCGCGTATA
* *
78223 TTGCGAGTGCTTTGAC
1 TTGCGAGCGCTTTCAC
78239 TTGCGAGCGCTTTCAC
1 TTGCGAGCGCTTTCAC
78255 TT
1 TT
78257 AATGCAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.26, T:0.38
Consensus pattern (16 bp):
TTGCGAGCGCTTTCAC
Left flanking sequence: Indices 77723 -- 78222
GTGCTGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTTG
TGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGC
TGACTTGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTC
ACTTTGTGCAAAGCCCAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAAC
GTCGGGAGCAAAGCTCAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAA
AGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTG
CGAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTG
CTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATA
Right flanking sequence: Indices 78257 -- 78756
AATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAA
AGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTG
ACTTGCGAGTGCTTTGAGCGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACCGTTGAGTTTCT
TTGTTTTTCATAGTGATGAAAAACTGCAATCAATCCTTTCCCTTTGTCTTTACTACTCGATCGGA
GGGCTTTGATCAAGGTGTTATGAAAATAGTTAAGAAAGAGCTGACAAAGAGGAGATTGAGATGAA
TGAATCGAGAGCTCAGGCTTCACTAGTTGCTTGCACCCTTGCTTGTGACCCTATGGGCAAAGAGT
CCCCTCTTCATTCAGAGAGGTTGGGCGGTGGAGAGAACGTTTTGCGATAGTTCCAGAGAGGAGCG
GTGGGCGAGTGACGAGCATCTTTCGATCGATTCAAAGAAATGTTC
Found at i:78263 original size:113 final size:113
Alignment explanation
Indices: 78060--78271 Score: 334
Period size: 113 Copynumber: 1.9 Consensus size: 113
78050 CATCGCGATA
*
78060 GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGA
1 GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGA
* ** *
78125 CTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGC
66 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCCTCGCGTATATTGC
* **
78173 GAGTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGA
1 GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGA
**
78238 CTTGCGAGCGCTTTCACTTAATGCAAAGCATCGC
66 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGC
78272 GTGCGAGTGC
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 89 1.00
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.31
Consensus pattern (113 bp):
GAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTATATTGCGAGTGCTTTGA
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCCTCGCGTATATTGC
Left flanking sequence: Indices 77560 -- 78059
CAACCGCTGAGATTCTGACCGAAACATTAGACAGAAAAAGCCCCCAACTTGATGGAAGGGTCGGG
AGCAAAGCTCAACAGAAGGGAGGGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGT
GCTGACTTGCGAGCGCTTAATGTCAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCAT
CGCGATAGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTG
ACTTGCGAGCGCTTTGTGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGTCAAGCATCGCG
TATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAAGGGTCGGG
AGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGAGCAAAGCTAAA
CGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATA
Right flanking sequence: Indices 78272 -- 78771
GTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTGCGTGC
GAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATAGAGTGCTTTGACTTGCGAGTGCTTT
GAGCGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTG
ATGAAAAACTGCAATCAATCCTTTCCCTTTGTCTTTACTACTCGATCGGAGGGCTTTGATCAAGG
TGTTATGAAAATAGTTAAGAAAGAGCTGACAAAGAGGAGATTGAGATGAATGAATCGAGAGCTCA
GGCTTCACTAGTTGCTTGCACCCTTGCTTGTGACCCTATGGGCAAAGAGTCCCCTCTTCATTCAG
AGAGGTTGGGCGGTGGAGAGAACGTTTTGCGATAGTTCCAGAGAGGAGCGGTGGGCGAGTGACGA
GCATCTTTCGATCGATTCAAAGAAATGTTCTTTTCATAACCATTA
Found at i:78398 original size:16 final size:16
Alignment explanation
Indices: 78377--78424 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
78367 TTGAGCGATA
78377 GAGTGCTTTGACTTGC
1 GAGTGCTTTGACTTGC
78393 GAGTGCTTTGAGC--GC
1 GAGTGCTTTGA-CTTGC
78408 GAGTGCTTTGACTTGC
1 GAGTGCTTTGACTTGC
78424 G
1 G
78425 TGCGAGTGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.03
15 13 0.45
16 14 0.48
17 1 0.03
ACGTcount: A:0.12, C:0.19, G:0.35, T:0.33
Consensus pattern (16 bp):
GAGTGCTTTGACTTGC
Left flanking sequence: Indices 77877 -- 78376
GCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTTGTGCAAAGCCCAAACGGAA
GGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGGGAGCAAAGCTCAACGAGCA
AAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGAC
TTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCT
TGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAATT
TTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTTCACTTAATGCAAAGC
ATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCAAACGAGCAAAGCTCTCTTG
CGTGCGAGTGCTTTGAGCGTGATATTGCGAGTGCTTTGAGCGATA
Right flanking sequence: Indices 78425 -- 78924
TGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTGATGAAAAACTGCAATCAATCCTT
TCCCTTTGTCTTTACTACTCGATCGGAGGGCTTTGATCAAGGTGTTATGAAAATAGTTAAGAAAG
AGCTGACAAAGAGGAGATTGAGATGAATGAATCGAGAGCTCAGGCTTCACTAGTTGCTTGCACCC
TTGCTTGTGACCCTATGGGCAAAGAGTCCCCTCTTCATTCAGAGAGGTTGGGCGGTGGAGAGAAC
GTTTTGCGATAGTTCCAGAGAGGAGCGGTGGGCGAGTGACGAGCATCTTTCGATCGATTCAAAGA
AATGTTCTTTTCATAACCATTAGCTAAAAGCTGTCTGTGATTCTAGAACAATAGAATGAAACATC
AGTAGCGGATGCAGCAGAGGTTGTAGTTTCTCTTCCAGTTGTTCCAGGGACTGATTCTGGAACAG
AAGTTGGCACTGTAGAATCAACATTTGAAGAAGCAGACGAATCAT
Found at i:78411 original size:15 final size:15
Alignment explanation
Indices: 78358--78418 Score: 70
Period size: 15 Copynumber: 3.9 Consensus size: 15
78348 GCGTGATATT
78358 GCGAGTGCTTTGAGC
1 GCGAGTGCTTTGAGC
*
78373 GATAGAGTGCTTTGA-C
1 G--CGAGTGCTTTGAGC
78389 TTGCGAGTGCTTTGAGC
1 --GCGAGTGCTTTGAGC
78406 GCGAGTGCTTTGA
1 GCGAGTGCTTTGA
78419 CTTGCGTGCG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 14 0.36
16 12 0.31
17 12 0.31
18 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.31
Consensus pattern (15 bp):
GCGAGTGCTTTGAGC
Left flanking sequence: Indices 77858 -- 78357
TGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACTTT
GTGCAAAGCCCAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTCGG
GAGCAAAGCTCAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGCAT
CGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGT
GCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTTTG
ACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCG
CTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCCCA
AACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATATT
Right flanking sequence: Indices 78419 -- 78918
CTTGCGTGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTGATGAAAAACTGCAATCA
ATCCTTTCCCTTTGTCTTTACTACTCGATCGGAGGGCTTTGATCAAGGTGTTATGAAAATAGTTA
AGAAAGAGCTGACAAAGAGGAGATTGAGATGAATGAATCGAGAGCTCAGGCTTCACTAGTTGCTT
GCACCCTTGCTTGTGACCCTATGGGCAAAGAGTCCCCTCTTCATTCAGAGAGGTTGGGCGGTGGA
GAGAACGTTTTGCGATAGTTCCAGAGAGGAGCGGTGGGCGAGTGACGAGCATCTTTCGATCGATT
CAAAGAAATGTTCTTTTCATAACCATTAGCTAAAAGCTGTCTGTGATTCTAGAACAATAGAATGA
AACATCAGTAGCGGATGCAGCAGAGGTTGTAGTTTCTCTTCCAGTTGTTCCAGGGACTGATTCTG
GAACAGAAGTTGGCACTGTAGAATCAACATTTGAAGAAGCAGACG
Found at i:78415 original size:31 final size:32
Alignment explanation
Indices: 78356--78424 Score: 113
Period size: 33 Copynumber: 2.2 Consensus size: 32
78346 GAGCGTGATA
78356 TTGCGAGTGCTTTGAGCGATAGAGTGCTTTGAC
1 TTGCGAGTGCTTTGAGCGA-AGAGTGCTTTGAC
*
78389 TTGCGAGTGCTTTGAGCG-CGAGTGCTTTGAC
1 TTGCGAGTGCTTTGAGCGAAGAGTGCTTTGAC
78420 TTGCG
1 TTGCG
78425 TGCGAGTGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 17 0.49
33 18 0.51
ACGTcount: A:0.14, C:0.17, G:0.35, T:0.33
Consensus pattern (32 bp):
TTGCGAGTGCTTTGAGCGAAGAGTGCTTTGAC
Left flanking sequence: Indices 77856 -- 78355
CTTGCGAGCGCTTAATGTCAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGTTTCACT
TTGTGCAAAGCCCAAACGGAAGGGTCGGGAGCAAAGCTCAACCTTCGGGAGCAAAGCTCAACGTC
GGGAGCAAAGCTCAACGAGCAAAGCTAAACGTCGCGAGCACTCTTGCGAGCGCTTTGTGCAAAGC
ATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGA
GTGCTTTGACTTGCGAGCGCTTGAATTTTGTGCAAAGCCTCGCCTCGCGTATATTGCGAGTGCTT
TGACTTGCGAGCGCTTGAATTTTGTGCAAAGCATCGCGTATATTGCGAGTGCTTTGACTTGCGAG
CGCTTTCACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTTGTGCAAAGCC
CAAACGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGCGTGATA
Right flanking sequence: Indices 78425 -- 78924
TGCGAGTGCTTTGACCGTTGAGTTTCTTTGTTTTTCATAGTGATGAAAAACTGCAATCAATCCTT
TCCCTTTGTCTTTACTACTCGATCGGAGGGCTTTGATCAAGGTGTTATGAAAATAGTTAAGAAAG
AGCTGACAAAGAGGAGATTGAGATGAATGAATCGAGAGCTCAGGCTTCACTAGTTGCTTGCACCC
TTGCTTGTGACCCTATGGGCAAAGAGTCCCCTCTTCATTCAGAGAGGTTGGGCGGTGGAGAGAAC
GTTTTGCGATAGTTCCAGAGAGGAGCGGTGGGCGAGTGACGAGCATCTTTCGATCGATTCAAAGA
AATGTTCTTTTCATAACCATTAGCTAAAAGCTGTCTGTGATTCTAGAACAATAGAATGAAACATC
AGTAGCGGATGCAGCAGAGGTTGTAGTTTCTCTTCCAGTTGTTCCAGGGACTGATTCTGGAACAG
AAGTTGGCACTGTAGAATCAACATTTGAAGAAGCAGACGAATCAT
Found at i:80276 original size:14 final size:15
Alignment explanation
Indices: 80247--80282 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
80237 GTCCTCGGAG
80247 AAGAACTAGGAGAGA
1 AAGAACTAGGAGAGA
80262 AAGAACTAGGA-AGA
1 AAGAACTAGGAGAGA
80276 AAGAACT
1 AAGAACT
80283 GACGCAACAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.56, C:0.08, G:0.28, T:0.08
Consensus pattern (15 bp):
AAGAACTAGGAGAGA
Left flanking sequence: Indices 79747 -- 80246
TTCTTCTTTCATTCCTGGCATTTGTCCATCAATCCCATTCTATGTCTATGCAATTTTATTGACTA
TGGATTCAACCTCTCGATGCTCTCCTTGTCCTTCCGGGATGTCGAAAGCTTCAGTCAACACAGTC
CTTAGCCCACATCTATCTAAGAAAGAAGAGTCCTTACCCCGCATTCATCAATATCAATCAAAGTA
GCAGGCGTGAAGAGTCGTGAAGGTTTAGTATACTCACTTCTAGTTACCGCACAACGTCCTATCTT
CATTCCCTTGGAACTATGTATTGCAGTTGGCAGATCACAGAAGGAAGTCAATAGCATACTAGAGT
AGAGGGTAGGGGGGAAGGAACAGATTGAGCAATACAGCTAAACCACTAATTATCTATAATAGGTG
CCTATCTCTTTTCTTTTGTTACAGAATGAAAGAGTAAGGCATGAAAGATCAGAGAAAAAGAAATC
AGTCTTAGAAGTTCATAGACGGTTGGTTAAATGCAGTCCTCGGAG
Right flanking sequence: Indices 80283 -- 80782
GACGCAACAGGGAAAGAGAACTCCTAAGAGTAAGAGCAGCCCTTCGTGTAGGAAGGTGTAGGAGC
GAAGCCACTCTTGCCCCAACGTCACTTTGACGTCATGTCACGTGACGTGACGTTAGGGTCAAAGG
CTTTTTCTTCTCTCTATCCAAGTTCAGTTACTGGAGGGCATGGCAACGAGCACTCAAAGGCGGAA
ATGCACCCTCCACGAGTTCTGGTGAAAGCGTGACTTCTAGGGACCTCTCAGATCTACCTATGATG
CAGGGGAAAAAAGGCAACTAAACAGTTCCATATCTATATTCAAATCAATGATGTTGAAATGCAGT
GAGGCGAGAAAAGGCATCCAAATACCCAGCTAATGACCCGGAAGGGCTTCTCCGGCTGTTAGGGT
TGTTAGATCTCTATATAAAGAGGGAACGCTACTTTTTCTTTGAAAGCTCGGCATCGAAAGGTGAT
GACGGGCTGGAGGAATTCAATCTTCTCCAATGAGGCACAAAGCAC
Found at i:82339 original size:20 final size:19
Alignment explanation
Indices: 82314--82435 Score: 107
Period size: 20 Copynumber: 6.6 Consensus size: 19
82304 GCAGGGAACC
82314 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGC-A
82334 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGC-A
* *
82354 GTCAAAGCACT--CTCTCA
1 GTCAAAGCACTCGCACGCA
* * *
82371 CTAAAAGCACTC-TATCGC-
1 GTCAAAGCACTCGCA-CGCA
82389 -TCAAAGCACTCGCA--C-
1 GTCAAAGCACTCGCACGCA
82404 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGC-A
82424 GTCAAAGCACTC
1 GTCAAAGCACTC
82436 TATCACTCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.01
16 14 0.16
17 20 0.24
18 5 0.06
19 2 0.02
20 43 0.51
ACGTcount: A:0.34, C:0.35, G:0.16, T:0.15
Consensus pattern (19 bp):
GTCAAAGCACTCGCACGCA
Left flanking sequence: Indices 81814 -- 82313
GTTGGTTAGGAAAAAAAGGTTCGGGATTCAAATAGCTTCCCGTGGACGGGCGAGCACTCCATTCT
TCTACAGGAGCCGGAAAGAACTGCTTTCTTACGCGCTCAAGGGCTGAACATTCCGTTCCACTTCC
ACTTACCCCTTTCCACTTTCTATTCATTGTCGTCCCGGACCTTCCAATCAACAGGTTTCGTCCGG
CCTTGAGAGAGAGCATTTGCCGGGGGCCTCACTGAGCCATCAACAGAAGGCTCTATACATGAAGT
TGCCTGGGAGAAAAGGTCATCTGAGATCCACAGAAGAGTTGGTAGACCCTATACAAGGTTATGAT
GCTGCTAGTACCGATCGGGAGATGGGGGATTCCACCATAGTCTTTCATGCCCCACCTTCAAAAGA
GTGAAGCCCTGACACCCGACCCCTCTGGATTCTGCCGTTTCGTAGTCGTCCCCTCCACCGCCGTC
AAGATCAAGGTTTTCCGCCCGTGATCATTTGTTTGGCAGGGAACC
Right flanking sequence: Indices 82436 -- 82935
TATCACTCAAAGCACTCTATCGCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCGCTCGC
AAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGA
TGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTC
AGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTGACATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCG
CGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTC
CCTCCCGACCCTTCCGATCAATTTTTGCTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAGAAGA
AGTAGGACTATCTATCCAACATAGACTCCTCTAATTGAGGGATAG
Found at i:82379 original size:17 final size:17
Alignment explanation
Indices: 82357--82456 Score: 60
Period size: 17 Copynumber: 5.8 Consensus size: 17
82347 CACGCAAGTC
*
82357 AAAGCACTCTCTCACTA
1 AAAGCACTCTATCACTA
* *
82374 AAAGCACTCTATCGCTC
1 AAAGCACTCTATCACTA
* *
82391 AAAGCACTC--GCACGTC
1 AAAGCACTCTATCAC-TA
* * * *
82407 AAAGCACTCGCACGCAAGTC
1 AAAGCACTC-TA-TC-ACTA
*
82427 AAAGCACTCTATCACTC
1 AAAGCACTCTATCACTA
82444 AAAGCACTCTATC
1 AAAGCACTCTATC
82457 GCAAGAGAGC
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
15 2 0.03
16 11 0.16
17 39 0.57
18 1 0.01
19 1 0.01
20 13 0.19
21 1 0.01
ACGTcount: A:0.34, C:0.35, G:0.12, T:0.19
Consensus pattern (17 bp):
AAAGCACTCTATCACTA
Left flanking sequence: Indices 81857 -- 82356
GGACGGGCGAGCACTCCATTCTTCTACAGGAGCCGGAAAGAACTGCTTTCTTACGCGCTCAAGGG
CTGAACATTCCGTTCCACTTCCACTTACCCCTTTCCACTTTCTATTCATTGTCGTCCCGGACCTT
CCAATCAACAGGTTTCGTCCGGCCTTGAGAGAGAGCATTTGCCGGGGGCCTCACTGAGCCATCAA
CAGAAGGCTCTATACATGAAGTTGCCTGGGAGAAAAGGTCATCTGAGATCCACAGAAGAGTTGGT
AGACCCTATACAAGGTTATGATGCTGCTAGTACCGATCGGGAGATGGGGGATTCCACCATAGTCT
TTCATGCCCCACCTTCAAAAGAGTGAAGCCCTGACACCCGACCCCTCTGGATTCTGCCGTTTCGT
AGTCGTCCCCTCCACCGCCGTCAAGATCAAGGTTTTCCGCCCGTGATCATTTGTTTGGCAGGGAA
CCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTC
Right flanking sequence: Indices 82457 -- 82956
GCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCG
ATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTA
AGCGCTCGCAAGTCAGCACGCGATGCTTGACATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTA
CACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCG
ACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTCCCGACCCTTCCGATCAA
TTTTTGCTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAGAAGAAGTAGGACTATCTATCCAACA
TAGACTCCTCTAATTGAGGGATAGATAGTTGGATAGGCGATGCTT
Found at i:82432 original size:70 final size:72
Alignment explanation
Indices: 82315--82458 Score: 238
Period size: 70 Copynumber: 2.0 Consensus size: 72
82305 CAGGGAACCG
*
82315 TCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCA
1 TCAAAGCACTCGCAC-C-AGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTAAAAGCA
82380 CTCTATCGC
64 CTCTATCGC
*
82389 TCAAAGCACTCGCA-C-GTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTCAAAGCACT
1 TCAAAGCACTCGCACCAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTAAAAGCACT
82452 CTATCGC
66 CTATCGC
82459 AAGAGAGCTT
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
70 53 0.78
72 1 0.01
74 14 0.21
ACGTcount: A:0.33, C:0.35, G:0.15, T:0.17
Consensus pattern (72 bp):
TCAAAGCACTCGCACCAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTAAAAGCACT
CTATCGC
Left flanking sequence: Indices 81815 -- 82314
TTGGTTAGGAAAAAAAGGTTCGGGATTCAAATAGCTTCCCGTGGACGGGCGAGCACTCCATTCTT
CTACAGGAGCCGGAAAGAACTGCTTTCTTACGCGCTCAAGGGCTGAACATTCCGTTCCACTTCCA
CTTACCCCTTTCCACTTTCTATTCATTGTCGTCCCGGACCTTCCAATCAACAGGTTTCGTCCGGC
CTTGAGAGAGAGCATTTGCCGGGGGCCTCACTGAGCCATCAACAGAAGGCTCTATACATGAAGTT
GCCTGGGAGAAAAGGTCATCTGAGATCCACAGAAGAGTTGGTAGACCCTATACAAGGTTATGATG
CTGCTAGTACCGATCGGGAGATGGGGGATTCCACCATAGTCTTTCATGCCCCACCTTCAAAAGAG
TGAAGCCCTGACACCCGACCCCTCTGGATTCTGCCGTTTCGTAGTCGTCCCCTCCACCGCCGTCA
AGATCAAGGTTTTCCGCCCGTGATCATTTGTTTGGCAGGGAACCG
Right flanking sequence: Indices 82459 -- 82958
AAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
GCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGCAA
GTCAGCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAG
CGCTCGCAAGTCAGCACGCGATGCTTGACATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTACA
CAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGAC
GTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTCCCGACCCTTCCGATCAATT
TTTGCTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAGAAGAAGTAGGACTATCTATCCAACATA
GACTCCTCTAATTGAGGGATAGATAGTTGGATAGGCGATGCTTGA
Found at i:82461 original size:37 final size:36
Alignment explanation
Indices: 82335--82452 Score: 138
Period size: 37 Copynumber: 3.3 Consensus size: 36
82325 CGCACGCAAG
82335 TCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCAC
1 TCAAAGCACTCGCACGCAAGTCAAAGCACTCT-TCAC
* * *
82372 TAAAAGCACTC-TATCGC---TCAAAGCACTC-GCAC
1 TCAAAGCACTCGCA-CGCAAGTCAAAGCACTCTTCAC
82404 GTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCAC
1 -TCAAAGCACTCGCACGCAAGTCAAAGCACTCT-TCAC
82442 TCAAAGCACTC
1 TCAAAGCACTC
82453 TATCGCAAGA
Statistics
Matches: 67, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
32 3 0.04
33 13 0.19
34 12 0.18
36 12 0.18
37 24 0.36
38 3 0.04
ACGTcount: A:0.34, C:0.36, G:0.14, T:0.17
Consensus pattern (36 bp):
TCAAAGCACTCGCACGCAAGTCAAAGCACTCTTCAC
Left flanking sequence: Indices 81835 -- 82334
CGGGATTCAAATAGCTTCCCGTGGACGGGCGAGCACTCCATTCTTCTACAGGAGCCGGAAAGAAC
TGCTTTCTTACGCGCTCAAGGGCTGAACATTCCGTTCCACTTCCACTTACCCCTTTCCACTTTCT
ATTCATTGTCGTCCCGGACCTTCCAATCAACAGGTTTCGTCCGGCCTTGAGAGAGAGCATTTGCC
GGGGGCCTCACTGAGCCATCAACAGAAGGCTCTATACATGAAGTTGCCTGGGAGAAAAGGTCATC
TGAGATCCACAGAAGAGTTGGTAGACCCTATACAAGGTTATGATGCTGCTAGTACCGATCGGGAG
ATGGGGGATTCCACCATAGTCTTTCATGCCCCACCTTCAAAAGAGTGAAGCCCTGACACCCGACC
CCTCTGGATTCTGCCGTTTCGTAGTCGTCCCCTCCACCGCCGTCAAGATCAAGGTTTTCCGCCCG
TGATCATTTGTTTGGCAGGGAACCGTCAAAGCACTCGCACGCAAG
Right flanking sequence: Indices 82453 -- 82952
TATCGCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCTAT
CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGC
TCGCAAGTCAGCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGC
ATTAAGCGCTCGCAAGTCAGCACGCGATGCTTGACATTAAGCGCTCGCAAGTCAGCACGCGATGC
TTTACACAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCT
CGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTCCCGACCCTTCCGA
TCAATTTTTGCTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAGAAGAAGTAGGACTATCTATCC
AACATAGACTCCTCTAATTGAGGGATAGATAGTTGGATAGGCGAT
Found at i:82540 original size:43 final size:43
Alignment explanation
Indices: 82491--82592 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
82481 CATTAAGTTC
*
82491 AAGCGCTCGCAAGTCAAAGCACTC-TATCGCGATGCTTTGCACA
1 AAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCACA
**
82534 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATT
1 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCACA
82577 AAGCGCTCGCAAGTCA
1 AAGCGCTCGCAAGTCA
82593 GCACGCGATG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (43 bp):
AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCACA
Left flanking sequence: Indices 81991 -- 82490
TCAACAGGTTTCGTCCGGCCTTGAGAGAGAGCATTTGCCGGGGGCCTCACTGAGCCATCAACAGA
AGGCTCTATACATGAAGTTGCCTGGGAGAAAAGGTCATCTGAGATCCACAGAAGAGTTGGTAGAC
CCTATACAAGGTTATGATGCTGCTAGTACCGATCGGGAGATGGGGGATTCCACCATAGTCTTTCA
TGCCCCACCTTCAAAAGAGTGAAGCCCTGACACCCGACCCCTCTGGATTCTGCCGTTTCGTAGTC
GTCCCCTCCACCGCCGTCAAGATCAAGGTTTTCCGCCCGTGATCATTTGTTTGGCAGGGAACCGT
CAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCAC
TCTATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTCAA
AGCACTCTATCGCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTC
Right flanking sequence: Indices 82593 -- 83092
GCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCT
CGCAAGTCAGCACGCGATGCTTGACATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAA
GCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTG
AGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACCCTCCCTCCCGACCCTTCCGATCAATTTTTG
CTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAGAAGAAGTAGGACTATCTATCCAACATAGACT
CCTCTAATTGAGGGATAGATAGTTGGATAGGCGATGCTTGAAGTTCATCTGTTTCAACGTTCATT
AGCCGGGCGGGGATGGAAAAAAATCATTCTTTGTCGAAGTCCTGTTAATGAAGTTGTTCGGGAAG
AAAACTGGATTGGGCGGTACGAGAAGAAGAGGTTCCACTGCGGAT
Found at i:82604 original size:35 final size:35
Alignment explanation
Indices: 82558--82733 Score: 273
Period size: 35 Copynumber: 4.9 Consensus size: 35
82548 CAAAGCACTC
82558 GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
82593 GCACGCGATGCTTTGCTTGCATTAAGCGCTCGCAAGTCA
1 GCACGCGATGC--T--TTGCATTAAGCGCTCGCAAGTCA
82632 GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
82667 GCACGCGATGC-TTGACATTAAGCGCTCGCAAGTCA
1 GCACGCGATGCTTTG-CATTAAGCGCTCGCAAGTCA
* **
82702 GCACGCGATGCTTTACACAAAGCGCTCGCAAG
1 GCACGCGATGCTTTGCATTAAGCGCTCGCAAG
82734 AGTGCTCGCG
Statistics
Matches: 132, Mismatches: 3, Indels: 12
0.90 0.02 0.08
Matches are distributed among these distances:
34 3 0.02
35 91 0.69
36 2 0.02
37 2 0.02
39 34 0.26
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (35 bp):
GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
Left flanking sequence: Indices 82058 -- 82557
GCTCTATACATGAAGTTGCCTGGGAGAAAAGGTCATCTGAGATCCACAGAAGAGTTGGTAGACCC
TATACAAGGTTATGATGCTGCTAGTACCGATCGGGAGATGGGGGATTCCACCATAGTCTTTCATG
CCCCACCTTCAAAAGAGTGAAGCCCTGACACCCGACCCCTCTGGATTCTGCCGTTTCGTAGTCGT
CCCCTCCACCGCCGTCAAGATCAAGGTTTTCCGCCCGTGATCATTTGTTTGGCAGGGAACCGTCA
AAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCACTC
TATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACTCAAAG
CACTCTATCGCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCAC
TCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTC
Right flanking sequence: Indices 82734 -- 83233
AGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCG
CGACGTTGAGCTTTGCTCGCGACCCTCCCTCCCGACCCTTCCGATCAATTTTTGCTTTGCTCATC
AAGTTGGGAAGAAGAAAAAGAAGAAGAAGTAGGACTATCTATCCAACATAGACTCCTCTAATTGA
GGGATAGATAGTTGGATAGGCGATGCTTGAAGTTCATCTGTTTCAACGTTCATTAGCCGGGCGGG
GATGGAAAAAAATCATTCTTTGTCGAAGTCCTGTTAATGAAGTTGTTCGGGAAGAAAACTGGATT
GGGCGGTACGAGAAGAAGAGGTTCCACTGCGGATGCTGCCGACCGAACAACCACTCTGGAGTATC
CTTTCCCCGGTGGCGGCCACCATTCTTTGTCGAAGTCCTGTTAATGAAGTTGTTCGGGAAGAAAA
GCTTCCACTATTGATCGTGCATCGATCGAATGACCAACATCAGAT
Found at i:82760 original size:19 final size:19
Alignment explanation
Indices: 82736--82821 Score: 172
Period size: 19 Copynumber: 4.5 Consensus size: 19
82726 CTCGCAAGAG
82736 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
82755 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
82774 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
82793 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
82812 TGCTCGCGAC
1 TGCTCGCGAC
82822 CCTCCCTCCC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.10, C:0.28, G:0.31, T:0.30
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 82236 -- 82735
TGCCGTTTCGTAGTCGTCCCCTCCACCGCCGTCAAGATCAAGGTTTTCCGCCCGTGATCATTTGT
TTGGCAGGGAACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTC
TCTCACTAAAAGCACTCTATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGCAAGTCAAAG
CACTCTATCACTCAAAGCACTCTATCGCAAGAGAGCTTTGCTCATTTGGGCATTAAGTTCAAGCG
CTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCA
CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTGACATTAAGCG
CTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 82822 -- 83321
CCTCCCTCCCGACCCTTCCGATCAATTTTTGCTTTGCTCATCAAGTTGGGAAGAAGAAAAAGAAG
AAGAAGTAGGACTATCTATCCAACATAGACTCCTCTAATTGAGGGATAGATAGTTGGATAGGCGA
TGCTTGAAGTTCATCTGTTTCAACGTTCATTAGCCGGGCGGGGATGGAAAAAAATCATTCTTTGT
CGAAGTCCTGTTAATGAAGTTGTTCGGGAAGAAAACTGGATTGGGCGGTACGAGAAGAAGAGGTT
CCACTGCGGATGCTGCCGACCGAACAACCACTCTGGAGTATCCTTTCCCCGGTGGCGGCCACCAT
TCTTTGTCGAAGTCCTGTTAATGAAGTTGTTCGGGAAGAAAAGCTTCCACTATTGATCGTGCATC
GATCGAATGACCAACATCAGATGAAAAGGGAGGCCTGGTTAGGGGCATTCGGAGGCCCCGGATTC
GGAAGGCAGGAGGAGTTAAAGCTTCGGGCGGGGGATGCATAAAGA
Found at i:85305 original size:20 final size:20
Alignment explanation
Indices: 85275--85334 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 20
85265 CGAACACGAG
85275 ATGGAAAGCGAGCGTATGGAC
1 ATGG-AAGCGAGCGTATGGAC
* *
85296 ATGGAAGCGAGTGCATAGG-C
1 ATGGAAGCGAGCGTAT-GGAC
85316 A--GAAGCGAGCGTATGGAC
1 ATGGAAGCGAGCGTATGGAC
85334 A
1 A
85335 GGTCATCGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 2 0.06
18 13 0.39
20 12 0.36
21 6 0.18
ACGTcount: A:0.33, C:0.15, G:0.38, T:0.13
Consensus pattern (20 bp):
ATGGAAGCGAGCGTATGGAC
Left flanking sequence: Indices 84775 -- 85274
ATACCTCGACTTGGCATCGATGAATTAGGCAGGTAATGGATTTCGGAAGAGGCGGTAATTAGTCT
CTCTTTGTTAGTAGTCTTTTTGAGAGGTTAATCGTGGCTTATTGAGTCAATTTCTCTTTGGCCCC
TTTCTCAATCTCCGTTTTCATTAGTTCAACTGGCAAAAGGGAGGAAGTGAAGGCCGAAGCGTGAC
TCGATCAGTCAAAGGAGCGTATGGCCCCTCGAGCAAGGGGGTACGAGCGTAACTGGCTTCTCGAG
CGTCACGGATACGAGCGGCAGTACTTAATCGATCAAATAGGACGCTGACTTCTTAGTCGAGCATA
AAAAGAAAGCAGGCCGATACGAGTGCTTGACAGAATCGAGCATGAAGTAGGCTTAAGAAGTAGGA
GCTCGAGTCAAGGGTACCCTCGAGCAGGGTACGAGCGTAGTACTTGATCCTTGGATCGTTCAAAG
TGTACGTCATCCGATCACTCGAGCACTGGACGATACGAACACGAG
Right flanking sequence: Indices 85335 -- 85834
GGTCATCGATAACATAGCCTTGAGCGAGCTGTCTTGCTTGCCGGCTTGATTGATCATCTTTCTTT
TCTGATACAAAAGACATTGGCTTGTAGCCTTTCTGTTGAGATCATTCACCCGTAAAGCACGGAAT
TGGTCATTCCATTCGTTGAGTAGTGGTGGCATTCATTTTTGCCCCAGCCGGAAAAGTGCTTTTAG
GTTCTTAGTAGCAGCCGGCGACCTTTTCTTCTTTTACTTCACATAGCTTTTCGTTTCCTTGATAG
CTGGAAGTTCTCCAAAAGTATGAAAAGCTGGAGGACTTTGTACCATCCATTCCGGTGTGGTTGGA
TTCCGTTCAACAGCCCAAGGACTTGGAGCACATCTTTTGTTGTTTCCACTGCTTGAAGTGATTGT
GACGACCACGAAGAAACGACGAATCCCAACTACGGATATATAAGGGCCAAAACTGCTAAGGGCAT
TCCATCCTGCGTAAGCATCCGGATAATCTGGAATGCGACGTGGCA
Found at i:91793 original size:20 final size:20
Alignment explanation
Indices: 91768--91995 Score: 193
Period size: 20 Copynumber: 12.1 Consensus size: 20
91758 AGATCGAACC
91768 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
91788 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
* *
91808 GTCAAAGCACT--CTCTC-A
1 GTCAAAGCACTCGCACGCAA
* * *
91825 CTAAAAGCACTC-TATCGC--
1 GTCAAAGCACTCGCA-CGCAA
91843 -TCAAAGCACTCGCA--C--
1 GTCAAAGCACTCGCACGCAA
91858 GTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
* *
91878 GTCAAAGCACTC-TA-TC-A
1 GTCAAAGCACTCGCACGCAA
*
91895 CTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
91915 GTCAAAGCACTCGCA--C-A
1 GTCAAAGCACTCGCACGCAA
*
91932 CTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
**
91952 GTCAAAGCACTCGCAATATCACA
1 GTCAAAGCACTCGC-A-CGCA-A
*
91975 CTCAAAGCACTCGCACGCAA
1 GTCAAAGCACTCGCACGCAA
91995 G
1 G
91996 AGAGCTTTGC
Statistics
Matches: 168, Mismatches: 23, Indels: 34
0.75 0.10 0.15
Matches are distributed among these distances:
15 1 0.01
16 14 0.08
17 47 0.28
18 8 0.05
19 5 0.03
20 73 0.43
21 3 0.02
22 3 0.02
23 14 0.08
ACGTcount: A:0.35, C:0.36, G:0.16, T:0.14
Consensus pattern (20 bp):
GTCAAAGCACTCGCACGCAA
Left flanking sequence: Indices 91268 -- 91767
GATGAAGCTGACGACGCTGCAAGGACACCCGAATGACGCATTTTTGCTTTCTCAGATGAAATGAA
CAGCACAGCTGATGAGTTCGACGAAGTGAATTTGGGCTCAGAAGGAGATTACAGGCCGACTTTCC
TAAGTCAGAAGTTAGATGAGCAACAAGCAGCAGCTATGATCAACCTTCTGTACGAATTTCAAGAC
TGTTTTGCATGGAGCTATGATGAGATGCCCGGTTTAGATCCCGACGTAGCTGTCCATCATTGACA
CATTAAGAAAGATGCAAGACCGGTTGCACAACCGCCAAGAAGGATAAAAGAAGATCATATCCCTC
AAATGGAAGAGTCAAGAAGTTCGAAAATGCAGGGTTTCTCAGGCCAGTTGCTCATTCAACATGGG
TTGAAAGGTTAGTGCCCGTCATTAAGCAAAATGGAGATCTCAGGACTGCTATTGATTATAGATCA
AAGATGCATGCCCCACCCCAAACAGACGTGATCTTAGATCGAACC
Right flanking sequence: Indices 91996 -- 92495
AGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAA
AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTT
GCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTC
GCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTT
GCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTTGGGC
TTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGAGTGCGTGCTTTGTGCAAA
GCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGCT
Found at i:91901 original size:17 final size:17
Alignment explanation
Indices: 91809--91906 Score: 83
Period size: 17 Copynumber: 5.6 Consensus size: 17
91799 CGCACGCAAG
*
91809 TCAAAGCACTCTCTCAC
1 TCAAAGCACTCTATCAC
* *
91826 TAAAAGCACTCTATCGC
1 TCAAAGCACTCTATCAC
*
91843 TCAAAGCACTC--GCAC
1 TCAAAGCACTCTATCAC
* * *
91858 GTCAAAGCACTCGCACGCAAG
1 -TCAAAGCACTC-TA-TC-AC
91879 TCAAAGCACTCTATCAC
1 TCAAAGCACTCTATCAC
91896 TCAAAGCACTC
1 TCAAAGCACTC
91907 GCACGCAAGT
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
15 2 0.03
16 11 0.17
17 36 0.55
18 1 0.02
19 1 0.02
20 13 0.20
21 1 0.02
ACGTcount: A:0.34, C:0.36, G:0.12, T:0.18
Consensus pattern (17 bp):
TCAAAGCACTCTATCAC
Left flanking sequence: Indices 91309 -- 91808
TTTTGCTTTCTCAGATGAAATGAACAGCACAGCTGATGAGTTCGACGAAGTGAATTTGGGCTCAG
AAGGAGATTACAGGCCGACTTTCCTAAGTCAGAAGTTAGATGAGCAACAAGCAGCAGCTATGATC
AACCTTCTGTACGAATTTCAAGACTGTTTTGCATGGAGCTATGATGAGATGCCCGGTTTAGATCC
CGACGTAGCTGTCCATCATTGACACATTAAGAAAGATGCAAGACCGGTTGCACAACCGCCAAGAA
GGATAAAAGAAGATCATATCCCTCAAATGGAAGAGTCAAGAAGTTCGAAAATGCAGGGTTTCTCA
GGCCAGTTGCTCATTCAACATGGGTTGAAAGGTTAGTGCCCGTCATTAAGCAAAATGGAGATCTC
AGGACTGCTATTGATTATAGATCAAAGATGCATGCCCCACCCCAAACAGACGTGATCTTAGATCG
AACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAG
Right flanking sequence: Indices 91907 -- 92406
GCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCAATATC
ACACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTC
TAAGTCAAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGT
CAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTT
GCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGAT
GCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGA
GCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCT
CCCGACCCTTCCATCAAGTTGGGCTTTGCACAATAACAAAGCACG
Found at i:91906 original size:37 final size:37
Alignment explanation
Indices: 91789--91995 Score: 239
Period size: 37 Copynumber: 5.5 Consensus size: 37
91779 CGCACGCAAG
*
91789 TCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCAC
1 TCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCAC
* * *
91826 TAAAAGCACTC-TATCGC---TCAAAGCACTC--GCAC
1 TCAAAGCACTCGCA-CGCAAGTCAAAGCACTCTATCAC
91858 GTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCAC
1 -TCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCAC
*
91896 TCAAAGCACTCGCACGCAAGTCAAAGCACTCGCA-CAC
1 TCAAAGCACTCGCACGCAAGTCAAAGCACTC-TATCAC
91933 TCAAAGCACTCGCACGCAAGTCAAAGCACTCGCAATATCACAC
1 TCAAAGCACTCGCACGCAAGTCAAAGCACT--C--TAT--CAC
91976 TCAAAGCACTCGCACGCAAG
1 TCAAAGCACTCGCACGCAAG
91996 AGAGCTTTGC
Statistics
Matches: 146, Mismatches: 9, Indels: 24
0.82 0.05 0.13
Matches are distributed among these distances:
32 3 0.02
33 13 0.09
34 12 0.08
36 12 0.08
37 77 0.53
38 4 0.03
39 1 0.01
40 1 0.01
43 23 0.16
ACGTcount: A:0.35, C:0.36, G:0.15, T:0.14
Consensus pattern (37 bp):
TCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCAC
Left flanking sequence: Indices 91289 -- 91788
AGGACACCCGAATGACGCATTTTTGCTTTCTCAGATGAAATGAACAGCACAGCTGATGAGTTCGA
CGAAGTGAATTTGGGCTCAGAAGGAGATTACAGGCCGACTTTCCTAAGTCAGAAGTTAGATGAGC
AACAAGCAGCAGCTATGATCAACCTTCTGTACGAATTTCAAGACTGTTTTGCATGGAGCTATGAT
GAGATGCCCGGTTTAGATCCCGACGTAGCTGTCCATCATTGACACATTAAGAAAGATGCAAGACC
GGTTGCACAACCGCCAAGAAGGATAAAAGAAGATCATATCCCTCAAATGGAAGAGTCAAGAAGTT
CGAAAATGCAGGGTTTCTCAGGCCAGTTGCTCATTCAACATGGGTTGAAAGGTTAGTGCCCGTCA
TTAAGCAAAATGGAGATCTCAGGACTGCTATTGATTATAGATCAAAGATGCATGCCCCACCCCAA
ACAGACGTGATCTTAGATCGAACCGTCAAAGCACTCGCACGCAAG
Right flanking sequence: Indices 91996 -- 92495
AGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAA
AAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTT
GCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTC
GCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTT
GCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTTGGGC
TTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGAGTGCGTGCTTTGTGCAAA
GCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGCT
Found at i:91922 original size:90 final size:91
Alignment explanation
Indices: 91765--91994 Score: 227
Period size: 90 Copynumber: 2.5 Consensus size: 91
91755 CTTAGATCGA
* * *
91765 ACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAA
1 ACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAACTCAAAGCACTCACGCACTAAA
* *
91830 AGCACTC-TATCGCTCAAAGCACTCGC
66 AGCACTCGCA-CACTCAAAGCACTCGC
* * *
91856 A-CGTCAAAGCACTCGCACGCAAGTCAAAGCACTC-TA-TC-ACTCAAAGCACTCGCACGCAAGT
1 ACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAACTCAAAGCACT--CACGC-ACT
*
91917 CAAAGCACTCGCACACTCAAAGCACTCGC
63 AAAAGCACTCGCACACTCAAAGCACTCGC
** *
91946 ACGCAAGTCAAAGCACTCGCAATATCACACTCAAAGCACTCGCACGCAA
1 AC-C--GTCAAAGCACTCGC-A-CGCA-AGTCAAAGCACTCGCACGCAA
91995 GAGAGCTTTG
Statistics
Matches: 111, Mismatches: 14, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
87 11 0.10
88 1 0.01
89 4 0.04
90 60 0.54
91 2 0.02
92 1 0.01
94 14 0.13
95 1 0.01
96 2 0.02
97 12 0.11
98 1 0.01
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.36, G:0.15, T:0.14
Consensus pattern (91 bp):
ACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAACTCAAAGCACTCACGCACTAAA
AGCACTCGCACACTCAAAGCACTCGC
Left flanking sequence: Indices 91265 -- 91764
ATTGATGAAGCTGACGACGCTGCAAGGACACCCGAATGACGCATTTTTGCTTTCTCAGATGAAAT
GAACAGCACAGCTGATGAGTTCGACGAAGTGAATTTGGGCTCAGAAGGAGATTACAGGCCGACTT
TCCTAAGTCAGAAGTTAGATGAGCAACAAGCAGCAGCTATGATCAACCTTCTGTACGAATTTCAA
GACTGTTTTGCATGGAGCTATGATGAGATGCCCGGTTTAGATCCCGACGTAGCTGTCCATCATTG
ACACATTAAGAAAGATGCAAGACCGGTTGCACAACCGCCAAGAAGGATAAAAGAAGATCATATCC
CTCAAATGGAAGAGTCAAGAAGTTCGAAAATGCAGGGTTTCTCAGGCCAGTTGCTCATTCAACAT
GGGTTGAAAGGTTAGTGCCCGTCATTAAGCAAAATGGAGATCTCAGGACTGCTATTGATTATAGA
TCAAAGATGCATGCCCCACCCCAAACAGACGTGATCTTAGATCGA
Right flanking sequence: Indices 91995 -- 92494
GAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTA
AAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTT
TGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCT
CGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTT
TGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGTTGGG
CTTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGAGTGCGTGCTTTGTGCAA
AGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGC
Found at i:91947 original size:23 final size:23
Alignment explanation
Indices: 91921--91990 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
91911 GCAAGTCAAA
91921 GCACTCGCACACTCAAAGCACTC
1 GCACTCGCACACTCAAAGCACTC
*
91944 GCA--CGCA-AGTCAAAGCACTC
1 GCACTCGCACACTCAAAGCACTC
* **
91964 GCAATATCACACTCAAAGCACTC
1 GCACTCGCACACTCAAAGCACTC
91987 GCAC
1 GCAC
91991 GCAAGAGAGC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 15 0.38
21 4 0.10
22 2 0.05
23 18 0.46
ACGTcount: A:0.34, C:0.39, G:0.14, T:0.13
Consensus pattern (23 bp):
GCACTCGCACACTCAAAGCACTC
Left flanking sequence: Indices 91421 -- 91920
CAAGCAGCAGCTATGATCAACCTTCTGTACGAATTTCAAGACTGTTTTGCATGGAGCTATGATGA
GATGCCCGGTTTAGATCCCGACGTAGCTGTCCATCATTGACACATTAAGAAAGATGCAAGACCGG
TTGCACAACCGCCAAGAAGGATAAAAGAAGATCATATCCCTCAAATGGAAGAGTCAAGAAGTTCG
AAAATGCAGGGTTTCTCAGGCCAGTTGCTCATTCAACATGGGTTGAAAGGTTAGTGCCCGTCATT
AAGCAAAATGGAGATCTCAGGACTGCTATTGATTATAGATCAAAGATGCATGCCCCACCCCAAAC
AGACGTGATCTTAGATCGAACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTC
AAAGCACTCTCTCACTAAAAGCACTCTATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGC
AAGTCAAAGCACTCTATCACTCAAAGCACTCGCACGCAAGTCAAA
Right flanking sequence: Indices 91991 -- 92490
GCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGTGAAACGCTCTAAGTCAAAGCACTCTCTC
ACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGAT
GCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGT
CAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAG
CGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGA
GCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCATCAAGT
TGGGCTTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGAGTGCGTGCTTTGT
GCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCA
Found at i:92177 original size:35 final size:35
Alignment explanation
Indices: 92137--92244 Score: 216
Period size: 35 Copynumber: 3.1 Consensus size: 35
92127 CATTAAGTTC
92137 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
1 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
92172 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
1 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
92207 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
1 AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
92242 AAG
1 AAG
92245 TGAAAGCGCT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 73 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (35 bp):
AAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATT
Left flanking sequence: Indices 91637 -- 92136
CAGTTGCTCATTCAACATGGGTTGAAAGGTTAGTGCCCGTCATTAAGCAAAATGGAGATCTCAGG
ACTGCTATTGATTATAGATCAAAGATGCATGCCCCACCCCAAACAGACGTGATCTTAGATCGAAC
CGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAG
CACTCTATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTATCACT
CAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACGCAAGTCAAAGCAC
TCGCAATATCACACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAG
TGAAACGCTCTAAGTCAAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTGAAAGC
GCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTC
Right flanking sequence: Indices 92245 -- 92744
TGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGA
CGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCCCGACCCTTCCA
TCAAGTTGGGCTTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGAGTGCGTG
CTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGCTCGTTCCCTA
ACGCATCCTTTCGACGTTGCGAGTGCTTTGTTGGTGGTCTTCGATGGCTTTACCAAGGAAGTCTG
CATTGCTGGTTACCTCTTTGCTGCTAATGTGTACAGGTTACGGCTAAAATTTCTTTCAGAACCTT
TACTTAAAGCAGTGTAGCTCGTCCCTGCAAAAGGCATTTGCAGGTGACCCTCATTCCGGTCTTCT
TCCTGTACCTGTGTCCTTAACTAGATCTGGGTATCCTCGTCTCAT
Found at i:92287 original size:19 final size:19
Alignment explanation
Indices: 92263--92367 Score: 201
Period size: 19 Copynumber: 5.5 Consensus size: 19
92253 CTCGCAAGAG
92263 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
92282 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
92301 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
92320 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
92339 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
*
92358 TGCTCCCGAC
1 TGCTCGCGAC
92368 CCTTCCATCA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
19 85 1.00
ACGTcount: A:0.10, C:0.29, G:0.30, T:0.30
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 91763 -- 92262
GAACCGTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTA
AAAGCACTCTATCGCTCAAAGCACTCGCACGTCAAAGCACTCGCACGCAAGTCAAAGCACTCTAT
CACTCAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCGCACGCAAGTCAAA
GCACTCGCAATATCACACTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCAC
AAAGTGAAACGCTCTAAGTCAAAGCACTCTCTCACTAAAAGCACGCGATGCTTTGCATTAAGTGA
AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCA
GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 92368 -- 92867
CCTTCCATCAAGTTGGGCTTTGCACAATAACAAAGCACGCACTCGCAAAGCGTAGGGCTTATAGA
GTGCGTGCTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGCTCG
TTCCCTAACGCATCCTTTCGACGTTGCGAGTGCTTTGTTGGTGGTCTTCGATGGCTTTACCAAGG
AAGTCTGCATTGCTGGTTACCTCTTTGCTGCTAATGTGTACAGGTTACGGCTAAAATTTCTTTCA
GAACCTTTACTTAAAGCAGTGTAGCTCGTCCCTGCAAAAGGCATTTGCAGGTGACCCTCATTCCG
GTCTTCTTCCTGTACCTGTGTCCTTAACTAGATCTGGGTATCCTCGTCTCATTCCCCGTTTTCAT
CGTCAGATGATTATGAGGCGTGATGACAAGGATGGTTCAACTGTATGGTTCTCCTTGTATAAAGT
TCTTCTCTTATGCAAGAGGATCCCCAAGGATTCCTTTGACAGTAT
Found at i:96698 original size:49 final size:49
Alignment explanation
Indices: 96626--96834 Score: 330
Period size: 49 Copynumber: 4.2 Consensus size: 49
96616 GAGCGCTTTG
96626 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
*
96675 TGCAAAGCATCGCG-TGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGAT-AGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
96724 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
1 TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
* *
96773 TGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAG
1 TGCAAAGCATCGCG-ATA----GAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
96827 TGCAAAGC
1 TGCAAAGC
96835 CCAAATGAGC
Statistics
Matches: 149, Mismatches: 4, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
48 1 0.01
49 105 0.70
50 4 0.03
54 39 0.26
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (49 bp):
TGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAA
Left flanking sequence: Indices 96126 -- 96625
TCGAACCGGCTCCTATTTCAATCCGTGCTGGACCGATCGATATACCAATAATTAAGTCTTCCGTC
CACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCC
TATGCCCATTCCAATCTTGTCCAACTTTGCTAACTCCCCCTTTTCAACCCGTATCTTGTTCGTTC
TGGAAACACGTCTTCTTATTCCATCTTTTCCCGAATCTCCCTTAACGGAAGAAATAGAAGCTCGA
GAAGGAAGACCTGCTACCTAGTTCACTCGCTATTCGTTCCAAAACTTCGGACATGGGAGGAAGTG
ACTCGGACGGCTGGACAAATCTATCCCAATCCTTTCTTTCGTCGCTACTTTGATTCAAAAGGTAA
CCTACGTCACGTCACGTCACGTCAATTGATGAGCAACCACTTGATGGAAGGGTCGGGAGGGAGGG
AGCAAAGCTCAACGTCGCGAGCAAAGCTATCTTGCGAGCGCTTTG
Right flanking sequence: Indices 96835 -- 97334
CCAAATGAGCAAAGCTCTCTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGATAG
AGTGCTTTGAGTGTGCGAGTGCTTTGACTTGCGTGCGAGTGCTTTTCACGCTTTGCGAGTGCGTG
CTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGCAATTCAATGCTCGTTCCCTT
AAGCAATTTCGACGTTGCGAGTGCTTTGATGTCTACGAAACTCGCTCTTACGCACGGAGAGCGAG
CGAGCGAAGACAAGCCGCGAGCCATGAGCCGCCTATCGGCAAGGCTCCCTTACTTCACTGAACTG
ATTCACGTCCAAACCTGCGCTGGCTCATTTTTCCTTTACGAGATCTCGGCTCTTCGGAATGGTTG
GAGAGAGCCCCGCCCCCTCTTGTCAGGCGCCGGGCCCGAGGGGGGTTGGACTACTTCCTGAAAGA
TCGTTTCGTTCCGGCCGGCAGGAGGGCCCCTGATCTATCCAATGA
Found at i:96880 original size:17 final size:17
Alignment explanation
Indices: 96858--96926 Score: 86
Period size: 17 Copynumber: 3.9 Consensus size: 17
96848 GCTCTCTTGC
96858 GTGCGAGTGCTTTGAGT
1 GTGCGAGTGCTTTGAGT
*
96875 GTGCGAGTGCTTTGACT
1 GTGCGAGTGCTTTGAGT
96892 -TGCGATAGAGTGCTTTGAGT
1 GTGC----GAGTGCTTTGAGT
96912 GTGCGAGTGCTTTGA
1 GTGCGAGTGCTTTGA
96927 CTTGCGTGCG
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 3 0.07
17 27 0.60
20 12 0.27
21 3 0.07
ACGTcount: A:0.14, C:0.13, G:0.38, T:0.35
Consensus pattern (17 bp):
GTGCGAGTGCTTTGAGT
Left flanking sequence: Indices 96358 -- 96857
TCCCTTAACGGAAGAAATAGAAGCTCGAGAAGGAAGACCTGCTACCTAGTTCACTCGCTATTCGT
TCCAAAACTTCGGACATGGGAGGAAGTGACTCGGACGGCTGGACAAATCTATCCCAATCCTTTCT
TTCGTCGCTACTTTGATTCAAAAGGTAACCTACGTCACGTCACGTCACGTCAATTGATGAGCAAC
CACTTGATGGAAGGGTCGGGAGGGAGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTATCTTGCGA
GCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGC
ATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGAGTGCT
TTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACTTGCGA
GCGCTTGAACTTAGTGCAAAGCCCAAATGAGCAAAGCTCTCTTGC
Right flanking sequence: Indices 96927 -- 97426
CTTGCGTGCGAGTGCTTTTCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCAAAGCTTTGCGAG
TGTGCTTTGCCCTGACGCAATTCAATGCTCGTTCCCTTAAGCAATTTCGACGTTGCGAGTGCTTT
GATGTCTACGAAACTCGCTCTTACGCACGGAGAGCGAGCGAGCGAAGACAAGCCGCGAGCCATGA
GCCGCCTATCGGCAAGGCTCCCTTACTTCACTGAACTGATTCACGTCCAAACCTGCGCTGGCTCA
TTTTTCCTTTACGAGATCTCGGCTCTTCGGAATGGTTGGAGAGAGCCCCGCCCCCTCTTGTCAGG
CGCCGGGCCCGAGGGGGGTTGGACTACTTCCTGAAAGATCGTTTCGTTCCGGCCGGCAGGAGGGC
CCCTGATCTATCCAATGAGGGAGCAAAAAACGGGCTTTGCTCCTGACAATAGGAAGAAAGAAATA
AGGGTCGAAGTTTAGACCGCTCACAGTAGTTCTACCTATAGAAAA
Found at i:96894 original size:37 final size:37
Alignment explanation
Indices: 96853--96944 Score: 159
Period size: 37 Copynumber: 2.5 Consensus size: 37
96843 GCAAAGCTCT
96853 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
*
96890 CTTGCGAT-AGAGTGCTTTGAGTGTGCGAGTGCTTTGA
1 CTTGCG-TGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
96927 CTTGCGTGCGAGTGCTTT
1 CTTGCGTGCGAGTGCTTT
96945 TCACGCTTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 1 0.02
37 49 0.96
38 1 0.02
ACGTcount: A:0.12, C:0.16, G:0.36, T:0.36
Consensus pattern (37 bp):
CTTGCGTGCGAGTGCTTTGAGTGTGCGAGTGCTTTGA
Left flanking sequence: Indices 96353 -- 96852
GAATCTCCCTTAACGGAAGAAATAGAAGCTCGAGAAGGAAGACCTGCTACCTAGTTCACTCGCTA
TTCGTTCCAAAACTTCGGACATGGGAGGAAGTGACTCGGACGGCTGGACAAATCTATCCCAATCC
TTTCTTTCGTCGCTACTTTGATTCAAAAGGTAACCTACGTCACGTCACGTCACGTCAATTGATGA
GCAACCACTTGATGGAAGGGTCGGGAGGGAGGGAGCAAAGCTCAACGTCGCGAGCAAAGCTATCT
TGCGAGCGCTTTGTGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGC
AAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGATAGA
GTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCCTCGCGTATATTGCGAGTGCTTTGACT
TGCGAGCGCTTGAACTTAGTGCAAAGCCCAAATGAGCAAAGCTCT
Right flanking sequence: Indices 96945 -- 97444
TCACGCTTTGCGAGTGCGTGCTTTGTGCAAAGCCAAAGCTTTGCGAGTGTGCTTTGCCCTGACGC
AATTCAATGCTCGTTCCCTTAAGCAATTTCGACGTTGCGAGTGCTTTGATGTCTACGAAACTCGC
TCTTACGCACGGAGAGCGAGCGAGCGAAGACAAGCCGCGAGCCATGAGCCGCCTATCGGCAAGGC
TCCCTTACTTCACTGAACTGATTCACGTCCAAACCTGCGCTGGCTCATTTTTCCTTTACGAGATC
TCGGCTCTTCGGAATGGTTGGAGAGAGCCCCGCCCCCTCTTGTCAGGCGCCGGGCCCGAGGGGGG
TTGGACTACTTCCTGAAAGATCGTTTCGTTCCGGCCGGCAGGAGGGCCCCTGATCTATCCAATGA
GGGAGCAAAAAACGGGCTTTGCTCCTGACAATAGGAAGAAAGAAATAAGGGTCGAAGTTTAGACC
GCTCACAGTAGTTCTACCTATAGAAAAGATCATGAAAGAGGCGAT
Found at i:101231 original size:17 final size:17
Alignment explanation
Indices: 101191--101272 Score: 87
Period size: 17 Copynumber: 4.7 Consensus size: 17
101181 CAAAGCGTGA
101191 AAAGCACTCGCACGCAAGTC
1 AAAGCACTCGCACGC---TC
*
101211 AAAGCACTCGCGCGCTC
1 AAAGCACTCGCACGCTC
*
101228 AAAGCACTC-TATCGCTC
1 AAAGCACTCGCA-CGCTC
*
101245 AAAGCACTCGCAAG-TC
1 AAAGCACTCGCACGCTC
101261 AAAGCACTCGCA
1 AAAGCACTCGCA
101273 ATATCACGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
16 14 0.25
17 26 0.47
18 1 0.02
20 14 0.25
ACGTcount: A:0.33, C:0.35, G:0.18, T:0.13
Consensus pattern (17 bp):
AAAGCACTCGCACGCTC
Left flanking sequence: Indices 100691 -- 101190
CGCTCCTCTTTCAGATCCTCGCATCCTTCTCCAGCTTTCCTGCCTCTCTCCTCGCCTTGCTTACC
TTGCCTGCCTGAACCTCGTGACTTCTTTCCTCGCCTGCGTCTCCCCTTGGCTTGTTTGCCTGCTC
GCTTCTCTCCTCGCCTTGCTTCCTTGCCTACTCTCTCGACTTGCGTTCACCGACGGAAGAAAATC
ATCGGCTTTCTACCGTGAAAAAGCAAGAAAGAAACGATCTCTTTGACTGACGTCAAGCAATACGT
GGAGTCACTCCCGATATTGCAGTAAAAGCAAGCAAGACGTGTAGGCGGATCGATCAGGAAGTCAA
TCTTTCGAAGACCGTTCTTTCGTATCTAGCCCCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGTG
CTTGATCGGGTTGCCGAAGTTTTCGGGCAACGAGCAAAGCCCTAATGCAATGAAAAGCGTAGCCC
AACGTCATGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGA
Right flanking sequence: Indices 101273 -- 101772
ATATCACGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTC
GCAAGCTTTGCTCCCGACGTTGGACTTTCTATTATAATGATAGTTGGGCTTTGCATTAAGTTCAA
GCGCTCGCAAGTCAAAGCACTCGCACTATACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAG
TCAAAGCACTCTATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGC
TTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCAC
TCGCAATATACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCA
CAAAGCGCTCGCAAGATAGCTTTGCTCCCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGTTT
GGGCTTTGCTCGAAAAGTTGGGGGCTTTGCGAATAGAGTGACATG
Found at i:101467 original size:54 final size:49
Alignment explanation
Indices: 101385--101543 Score: 206
Period size: 43 Copynumber: 3.3 Consensus size: 49
101375 TGATAGTTGG
101385 GCTTTGCATTAAGTTC-AAGCGCTCGCAAGTCAAAGCACTCGCACTATACGCGAT
1 GCTTTGCATTAAG-TCAAAGCGCTCGCAAGTCAAAGCACT----CTAT-CGCGAT
*
101439 GCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
1 GCTTTGCATTAAGTCAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
101488 GCTTTGC----A--CAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
1 GCTTTGCATTAAGTCAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
101531 GCTTTGCATTAAG
1 GCTTTGCATTAAG
101544 CGCTCGCAAG
Statistics
Matches: 97, Mismatches: 2, Indels: 18
0.83 0.02 0.15
Matches are distributed among these distances:
43 41 0.42
45 1 0.01
47 1 0.01
49 13 0.13
50 4 0.04
53 1 0.01
54 36 0.37
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (49 bp):
GCTTTGCATTAAGTCAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGAT
Left flanking sequence: Indices 100885 -- 101384
CATCGGCTTTCTACCGTGAAAAAGCAAGAAAGAAACGATCTCTTTGACTGACGTCAAGCAATACG
TGGAGTCACTCCCGATATTGCAGTAAAAGCAAGCAAGACGTGTAGGCGGATCGATCAGGAAGTCA
ATCTTTCGAAGACCGTTCTTTCGTATCTAGCCCCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGT
GCTTGATCGGGTTGCCGAAGTTTTCGGGCAACGAGCAAAGCCCTAATGCAATGAAAAGCGTAGCC
CAACGTCATGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGT
CAAAGCACTCGCGCGCTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCGCAAT
ATCACGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTCGC
AAGCTTTGCTCCCGACGTTGGACTTTCTATTATAATGATAGTTGG
Right flanking sequence: Indices 101544 -- 102043
CGCTCGCAAGTCAGCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATAC
GCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCACAAAGCGCTCG
CAAGATAGCTTTGCTCCCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGTTTGGGCTTTGCTC
GAAAAGTTGGGGGCTTTGCGAATAGAGTGACATGACGTTGGCTTCGTTTCTTCTGAAACTTCCGC
GGATGGTGTGGCCGGGGCTACGGTATACTCCACTAGGCTTTGGCCATTTCGGTGTGCGGAAAAGG
CCCCATCGCCTAAAAGGGGGCGCACCTCATTTTTCTTCTCATCTCAAAAGAGAAAGACAAAGGTT
ACCATAACTACTGGAATGGGACGGGGTCCTTTGCCTATTTCGTCCACTTTCTGCAAAAGTCTAGC
TCGAAGAATTTATCCGATCCATTCTCTATCACATACCTTGATTGA
Found at i:101515 original size:43 final size:43
Alignment explanation
Indices: 101454--101599 Score: 218
Period size: 43 Copynumber: 3.6 Consensus size: 43
101444 GCATTAAGTG
101454 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAC
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAC
*
101497 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAT
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAC
*
101540 TAAGCGCTCGCAAGTC--AG----C-A-CGCGATGCTTTGCAC
1 AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAC
101575 AAAGCGCTCGCAAGTCAAAGCACTC
1 AAAGCGCTCGCAAGTCAAAGCACTC
101600 GCAATATACG
Statistics
Matches: 93, Mismatches: 4, Indels: 14
0.84 0.04 0.13
Matches are distributed among these distances:
35 29 0.31
36 1 0.01
37 3 0.03
41 3 0.03
43 57 0.61
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (43 bp):
AAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCAC
Left flanking sequence: Indices 100954 -- 101453
GTCACTCCCGATATTGCAGTAAAAGCAAGCAAGACGTGTAGGCGGATCGATCAGGAAGTCAATCT
TTCGAAGACCGTTCTTTCGTATCTAGCCCCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGTGCTT
GATCGGGTTGCCGAAGTTTTCGGGCAACGAGCAAAGCCCTAATGCAATGAAAAGCGTAGCCCAAC
GTCATGAGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAA
GCACTCGCGCGCTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCGCAATATCA
CGCTCAAAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTCGCAAGC
TTTGCTCCCGACGTTGGACTTTCTATTATAATGATAGTTGGGCTTTGCATTAAGTTCAAGCGCTC
GCAAGTCAAAGCACTCGCACTATACGCGATGCTTTGCATTAAGTG
Right flanking sequence: Indices 101600 -- 102099
GCAATATACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCACA
AAGCGCTCGCAAGATAGCTTTGCTCCCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGTTTGG
GCTTTGCTCGAAAAGTTGGGGGCTTTGCGAATAGAGTGACATGACGTTGGCTTCGTTTCTTCTGA
AACTTCCGCGGATGGTGTGGCCGGGGCTACGGTATACTCCACTAGGCTTTGGCCATTTCGGTGTG
CGGAAAAGGCCCCATCGCCTAAAAGGGGGCGCACCTCATTTTTCTTCTCATCTCAAAAGAGAAAG
ACAAAGGTTACCATAACTACTGGAATGGGACGGGGTCCTTTGCCTATTTCGTCCACTTTCTGCAA
AAGTCTAGCTCGAAGAATTTATCCGATCCATTCTCTATCACATACCTTGATTGAGGGTTGTCATG
CGAGAGATTGATTCTTTCTCTCTTGTTCCTGTTCATTTTCATCTT
Found at i:101571 original size:35 final size:35
Alignment explanation
Indices: 101525--101591 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
101515 AGCACTCTAT
**
101525 CGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCA
1 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAGCA
101560 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCA
1 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCA
101592 AAGCACTCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (35 bp):
CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAGCA
Left flanking sequence: Indices 101025 -- 101524
GACCGTTCTTTCGTATCTAGCCCCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGTGCTTGATCGG
GTTGCCGAAGTTTTCGGGCAACGAGCAAAGCCCTAATGCAATGAAAAGCGTAGCCCAACGTCATG
AGCAAAGCCCACAAAGCACGCACTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTC
GCGCGCTCAAAGCACTCTATCGCTCAAAGCACTCGCAAGTCAAAGCACTCGCAATATCACGCTCA
AAGCACTCGCACGCAAGAGAGCTTTGCTCGTTTGGGCTTTGCACAAAGCGCTCGCAAGCTTTGCT
CCCGACGTTGGACTTTCTATTATAATGATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGT
CAAAGCACTCGCACTATACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCT
ATCGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCTAT
Right flanking sequence: Indices 101592 -- 102091
AAGCACTCGCAATATACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAGCACGCGATGC
TTTGCACAAAGCGCTCGCAAGATAGCTTTGCTCCCGACGTTGAGCTTTGCTCGCGACCCTCCCTT
CCGTTTGGGCTTTGCTCGAAAAGTTGGGGGCTTTGCGAATAGAGTGACATGACGTTGGCTTCGTT
TCTTCTGAAACTTCCGCGGATGGTGTGGCCGGGGCTACGGTATACTCCACTAGGCTTTGGCCATT
TCGGTGTGCGGAAAAGGCCCCATCGCCTAAAAGGGGGCGCACCTCATTTTTCTTCTCATCTCAAA
AGAGAAAGACAAAGGTTACCATAACTACTGGAATGGGACGGGGTCCTTTGCCTATTTCGTCCACT
TTCTGCAAAAGTCTAGCTCGAAGAATTTATCCGATCCATTCTCTATCACATACCTTGATTGAGGG
TTGTCATGCGAGAGATTGATTCTTTCTCTCTTGTTCCTGTTCATT
Found at i:101571 original size:78 final size:84
Alignment explanation
Indices: 101482--101677 Score: 305
Period size: 89 Copynumber: 2.3 Consensus size: 84
101472 AGCACTCTAT
101482 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACT-C-TAT-CGCGATGCTTTGC-A-TT-
1 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCCATATACGCGATGCTTTGCAAGTTC
101541 AAGCGCTCGCAAGTCAGCA
66 AAGCGCTCGCAAGTCAGCA
101560 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTA
1 CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTC-C-ATATACGCGATGCTTTGC---A
101625 AGTTCAAGCGCTCGCAAGTCAGCA
61 AGTTCAAGCGCTCGCAAGTCAGCA
101649 CGCGATGCTTTGCACAAAGCGCTCGCAAG
1 CGCGATGCTTTGCACAAAGCGCTCGCAAG
101678 ATAGCTTTGC
Statistics
Matches: 107, Mismatches: 0, Indels: 11
0.91 0.00 0.09
Matches are distributed among these distances:
78 39 0.36
80 1 0.01
82 3 0.03
83 13 0.12
87 1 0.01
88 2 0.02
89 48 0.45
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (84 bp):
CGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCCATATACGCGATGCTTTGCAAGTTC
AAGCGCTCGCAAGTCAGCA
Left flanking sequence: Indices 100982 -- 101481
GCAAGACGTGTAGGCGGATCGATCAGGAAGTCAATCTTTCGAAGACCGTTCTTTCGTATCTAGCC
CCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGTGCTTGATCGGGTTGCCGAAGTTTTCGGGCAAC
GAGCAAAGCCCTAATGCAATGAAAAGCGTAGCCCAACGTCATGAGCAAAGCCCACAAAGCACGCA
CTCGCAAAGCGTGAAAAGCACTCGCACGCAAGTCAAAGCACTCGCGCGCTCAAAGCACTCTATCG
CTCAAAGCACTCGCAAGTCAAAGCACTCGCAATATCACGCTCAAAGCACTCGCACGCAAGAGAGC
TTTGCTCGTTTGGGCTTTGCACAAAGCGCTCGCAAGCTTTGCTCCCGACGTTGGACTTTCTATTA
TAATGATAGTTGGGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACTATACGCG
ATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCTAT
Right flanking sequence: Indices 101678 -- 102177
ATAGCTTTGCTCCCGACGTTGAGCTTTGCTCGCGACCCTCCCTTCCGTTTGGGCTTTGCTCGAAA
AGTTGGGGGCTTTGCGAATAGAGTGACATGACGTTGGCTTCGTTTCTTCTGAAACTTCCGCGGAT
GGTGTGGCCGGGGCTACGGTATACTCCACTAGGCTTTGGCCATTTCGGTGTGCGGAAAAGGCCCC
ATCGCCTAAAAGGGGGCGCACCTCATTTTTCTTCTCATCTCAAAAGAGAAAGACAAAGGTTACCA
TAACTACTGGAATGGGACGGGGTCCTTTGCCTATTTCGTCCACTTTCTGCAAAAGTCTAGCTCGA
AGAATTTATCCGATCCATTCTCTATCACATACCTTGATTGAGGGTTGTCATGCGAGAGATTGATT
CTTTCTCTCTTGTTCCTGTTCATTTTCATCTTTCTATGATATGATAGAGGATAGAGCGTTGTTGC
ATTGCCTTGTCTTCTCCTTTCCTTATCCTTATAATGCACTGTCTG
Found at i:103662 original size:19 final size:19
Alignment explanation
Indices: 103580--103655 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 19
103570 GGGAGGGAGG
*
103580 GTCGCGAGCAAAGCT-CAAC
1 GTCGCGAGCAAAG-TGAAAC
103599 GTCGCGAGCAAAGTGAAAC
1 GTCGCGAGCAAAGTGAAAC
103618 GGAAGGGTCGCGAGCAAAGTGAAAC
1 ------GTCGCGAGCAAAGTGAAAC
103643 GTCGCGAGCAAAG
1 GTCGCGAGCAAAG
103656 CTAAACGAGC
Statistics
Matches: 49, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
18 1 0.02
19 29 0.59
25 19 0.39
ACGTcount: A:0.34, C:0.22, G:0.34, T:0.09
Consensus pattern (19 bp):
GTCGCGAGCAAAGTGAAAC
Left flanking sequence: Indices 103080 -- 103579
TACCTTGACTTTATAGTGTCCTTAGATCTCTTGAATTTGACAAGGGCCTTCTCTCAAAGAACGAA
ATGGGCCTCATATCTGTCGTTTCATCTGTATCTGTCTTCATTCTTCCCTTCATTCGAGTCGTTTC
TTTCTTTTTTTTATCCGGGTGATTGGATCGCCCCGGCGGGGTTTCTCTGACCTGACTGACCCAAA
GGGCCCTTAGAAGCGCTGCACTCCCGTAACTGATCTTTTAGTAGGTGATGGAGCAGAGCGGACCC
CGGTCTCCCTTGGCAAGAGTTTCTTATGTTCTGCCTTAATGAGTGGGAGAGGTAGCTTACTTAAT
TTAATTAGGATATCACTACGGACTGCGCAGGATCCTCAAAACTGAATATCATATCACCTCTGATC
TCGGCATCTTCTTACTAGGTACTAGGTTCTTCCGCCAATTTCTCTATTCGTTCCTCATCCTTTTG
ACCAACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGGGAGG
Right flanking sequence: Indices 103656 -- 104155
CTAAACGAGCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGC
TGACTTGCGAGCGCTTAATGCAAAGCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTT
AATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTG
CTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTG
ACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGA
GTGCTTTGACTTGCGATAGAGTGCTTTTCACGTTTTGCGAGTGTTCGATTCGCCGCTTCTATTTG
TATTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTTGTTTCGCTTTGCGAGTGCTTTGATGCTCGG
TGTGTGCTATTGTTTGTTTCGGCTCATCCACTTTTCTTTCAATAT
Found at i:103662 original size:44 final size:46
Alignment explanation
Indices: 103577--103680 Score: 135
Period size: 44 Copynumber: 2.3 Consensus size: 46
103567 GTCGGGAGGG
*
103577 AGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACG-G-A
1 AGGGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAACGAGAA
103621 AGGGTCGCGAGCAAAG-TGAAACGTCGCGAGCAAAGCT-AAACGAGCAA
1 AGGGTCGCGAGCAAAGCT-AAACGTCGCGAGCAAAG-TGAAACGAG-AA
*
103668 AGCGTCGCGAGCA
1 AGGGTCGCGAGCA
103681 CTCTTGCGAG
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
43 1 0.02
44 37 0.70
45 2 0.04
47 13 0.25
ACGTcount: A:0.35, C:0.23, G:0.34, T:0.09
Consensus pattern (46 bp):
AGGGTCGCGAGCAAAGCTAAACGTCGCGAGCAAAGTGAAACGAGAA
Left flanking sequence: Indices 103077 -- 103576
TCTTACCTTGACTTTATAGTGTCCTTAGATCTCTTGAATTTGACAAGGGCCTTCTCTCAAAGAAC
GAAATGGGCCTCATATCTGTCGTTTCATCTGTATCTGTCTTCATTCTTCCCTTCATTCGAGTCGT
TTCTTTCTTTTTTTTATCCGGGTGATTGGATCGCCCCGGCGGGGTTTCTCTGACCTGACTGACCC
AAAGGGCCCTTAGAAGCGCTGCACTCCCGTAACTGATCTTTTAGTAGGTGATGGAGCAGAGCGGA
CCCCGGTCTCCCTTGGCAAGAGTTTCTTATGTTCTGCCTTAATGAGTGGGAGAGGTAGCTTACTT
AATTTAATTAGGATATCACTACGGACTGCGCAGGATCCTCAAAACTGAATATCATATCACCTCTG
ATCTCGGCATCTTCTTACTAGGTACTAGGTTCTTCCGCCAATTTCTCTATTCGTTCCTCATCCTT
TTGACCAACGTCACGTCACGTCAATTGATGGAAGGGTCGGGAGGG
Right flanking sequence: Indices 103681 -- 104180
CTCTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAG
CATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTT
GCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTT
AATGCAAAGCATCGCGTGCTTTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAA
AGCTCTCTTGCCTTATAGTGCGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCT
TTTCACGTTTTGCGAGTGTTCGATTCGCCGCTTCTATTTGTATTTGCGAGTGCGTGCTTTGTGCA
AAGCACTCTTGTTTCGCTTTGCGAGTGCTTTGATGCTCGGTGTGTGCTATTGTTTGTTTCGGCTC
ATCCACTTTTCTTTCAATATCCTCCTGCTAAAGATAAAATCCATG
Found at i:103710 original size:41 final size:41
Alignment explanation
Indices: 103664--103895 Score: 216
Period size: 41 Copynumber: 5.4 Consensus size: 41
103654 AGCTAAACGA
* * *
103664 GCAAAGCGTCGCGAGCACTCTTGCGAGCGCTTGAACTTAAT
1 GCAAAGCATCGCGTGCTCTCTTGCGAGCGCTTGAACTTAAT
** * *
103705 GCAAAGCATCGCGTGCTGACTTGCGAGCGCTT-AA-TGCAAA
1 GCAAAGCATCGCGTGCTCTCTTGCGAGCGCTTGAACT-TAAT
** * * *
103745 GCATCGCGATAGAGTGCTTTGACTTGCGAGCGCTTGAACTTAAT
1 GCAAAGC-ATCGCGTGCTCT--CTTGCGAGCGCTTGAACTTAAT
**
103789 GCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAAT
1 GCAAAGCATCGCGTGCTCTCTTGCGAGCGCTTGAACTTAAT
103830 GCAAAGCATCGCGTGCGAGTGCTTTGACTTGCGAGCGCTTGAACTTAAT
1 GCAAAGCATCGCGTGC---T-C--T--CTTGCGAGCGCTTGAACTTAAT
103879 GCAAAGCATCGCGTGCT
1 GCAAAGCATCGCGTGCT
103896 TTTAGTGAGA
Statistics
Matches: 154, Mismatches: 23, Indels: 23
0.77 0.12 0.12
Matches are distributed among these distances:
39 1 0.01
40 9 0.06
41 73 0.47
43 21 0.14
44 10 0.06
45 1 0.01
46 1 0.01
49 38 0.25
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
GCAAAGCATCGCGTGCTCTCTTGCGAGCGCTTGAACTTAAT
Left flanking sequence: Indices 103164 -- 103663
TTTCATCTGTATCTGTCTTCATTCTTCCCTTCATTCGAGTCGTTTCTTTCTTTTTTTTATCCGGG
TGATTGGATCGCCCCGGCGGGGTTTCTCTGACCTGACTGACCCAAAGGGCCCTTAGAAGCGCTGC
ACTCCCGTAACTGATCTTTTAGTAGGTGATGGAGCAGAGCGGACCCCGGTCTCCCTTGGCAAGAG
TTTCTTATGTTCTGCCTTAATGAGTGGGAGAGGTAGCTTACTTAATTTAATTAGGATATCACTAC
GGACTGCGCAGGATCCTCAAAACTGAATATCATATCACCTCTGATCTCGGCATCTTCTTACTAGG
TACTAGGTTCTTCCGCCAATTTCTCTATTCGTTCCTCATCCTTTTGACCAACGTCACGTCACGTC
AATTGATGGAAGGGTCGGGAGGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACG
GAAGGGTCGCGAGCAAAGTGAAACGTCGCGAGCAAAGCTAAACGA
Right flanking sequence: Indices 103896 -- 104395
TTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTG
CGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGTTTTGCGAGTGTT
CGATTCGCCGCTTCTATTTGTATTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTTGTTTCGCTTT
GCGAGTGCTTTGATGCTCGGTGTGTGCTATTGTTTGTTTCGGCTCATCCACTTTTCTTTCAATAT
CCTCCTGCTAAAGATAAAATCCATGCTACTCGGCAGGTCTCTCTACTTCCTATTCAAGAGGCTCG
GGTGGGGGAAAGGAGATGGAAGAAACTCGACCAACTCATCTTTGTTTCGATGAGCACTCGACCGC
TCCCCTTTTTCGCCCCAAACAAACCGAAAAGGCTCATTGCGAAAGATTCAACATTCAACACAAAG
AAAGAGATTCGCACAAAGCCATAGAGAGAACCATTGCTCCCATCA
Found at i:103880 original size:90 final size:84
Alignment explanation
Indices: 103683--103895 Score: 347
Period size: 90 Copynumber: 2.5 Consensus size: 84
103673 CGCGAGCACT
103683 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCA
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCA
103748 TCGCGATAGAGTGCTTTGA
66 TCGCGATAGAGTGCTTTGA
103767 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTGAACTTAATGC
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGA--GC--G--CTTAATGC
*
103832 AAAGCATCGCG-TGCGAGTGCTTTGA
60 AAAGCATCGCGAT-AGAGTGCTTTGA
103857 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCT
1 CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCT
103896 TTTAGTGAGA
Statistics
Matches: 121, Mismatches: 1, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
84 48 0.40
86 2 0.02
88 1 0.01
89 1 0.01
90 69 0.57
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (84 bp):
CTTGCGAGCGCTTGAACTTAATGCAAAGCATCGCGTGCTGACTTGCGAGCGCTTAATGCAAAGCA
TCGCGATAGAGTGCTTTGA
Left flanking sequence: Indices 103183 -- 103682
CATTCTTCCCTTCATTCGAGTCGTTTCTTTCTTTTTTTTATCCGGGTGATTGGATCGCCCCGGCG
GGGTTTCTCTGACCTGACTGACCCAAAGGGCCCTTAGAAGCGCTGCACTCCCGTAACTGATCTTT
TAGTAGGTGATGGAGCAGAGCGGACCCCGGTCTCCCTTGGCAAGAGTTTCTTATGTTCTGCCTTA
ATGAGTGGGAGAGGTAGCTTACTTAATTTAATTAGGATATCACTACGGACTGCGCAGGATCCTCA
AAACTGAATATCATATCACCTCTGATCTCGGCATCTTCTTACTAGGTACTAGGTTCTTCCGCCAA
TTTCTCTATTCGTTCCTCATCCTTTTGACCAACGTCACGTCACGTCAATTGATGGAAGGGTCGGG
AGGGAGGGTCGCGAGCAAAGCTCAACGTCGCGAGCAAAGTGAAACGGAAGGGTCGCGAGCAAAGT
GAAACGTCGCGAGCAAAGCTAAACGAGCAAAGCGTCGCGAGCACT
Right flanking sequence: Indices 103896 -- 104395
TTTAGTGAGAGAGTGCTTTGACTTAGAGCGTTTCACTTTGTGCAAAGCTCTCTTGCCTTATAGTG
CGAGTGCTTTGAGTGATAGAGTGCTTTGACTTGCGATAGAGTGCTTTTCACGTTTTGCGAGTGTT
CGATTCGCCGCTTCTATTTGTATTTGCGAGTGCGTGCTTTGTGCAAAGCACTCTTGTTTCGCTTT
GCGAGTGCTTTGATGCTCGGTGTGTGCTATTGTTTGTTTCGGCTCATCCACTTTTCTTTCAATAT
CCTCCTGCTAAAGATAAAATCCATGCTACTCGGCAGGTCTCTCTACTTCCTATTCAAGAGGCTCG
GGTGGGGGAAAGGAGATGGAAGAAACTCGACCAACTCATCTTTGTTTCGATGAGCACTCGACCGC
TCCCCTTTTTCGCCCCAAACAAACCGAAAAGGCTCATTGCGAAAGATTCAACATTCAACACAAAG
AAAGAGATTCGCACAAAGCCATAGAGAGAACCATTGCTCCCATCA
Found at i:106413 original size:20 final size:20
Alignment explanation
Indices: 106388--106459 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
106378 TTCTGGACAC
106388 TCAAAGCACTCGCACGCAAG
1 TCAAAGCACTCGCACGCAAG
* * *
106408 TCAAAGCACT--CTCTC-AC
1 TCAAAGCACTCGCACGCAAG
*
106425 TAAAAGCACTCGCACGCAAG
1 TCAAAGCACTCGCACGCAAG
106445 TCAAAGCACTCGCAC
1 TCAAAGCACTCGCAC
106460 ACTCAAAGCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 10 0.24
18 3 0.07
19 3 0.07
20 25 0.61
ACGTcount: A:0.35, C:0.36, G:0.15, T:0.14
Consensus pattern (20 bp):
TCAAAGCACTCGCACGCAAG
Left flanking sequence: Indices 105888 -- 106387
TTGGGTTCTTCCAACCGTTCAGTTCTTCCAACCGTGAAGGTCAGCATTCCGTTTCTTCTTCCTTG
GTTGTTGACACACCATACGGCTGTAGTTGGGTGATGGCATTTGGCAGGCCTGTCAGTGTTCCGCC
CGTATCACAGGGGGTGTACCCGGAGTGATACCCTATACAAGGCGGCGCCCCTATTCCCTCTAAAG
CCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGACAGATGGCAAAATGCAATCCG
AATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAGAACTGACATGATAGCTTAACT
TAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGTAACAATGTGTGAACCTCCGCG
AGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTCTTTTCTTAATAGAGTGGTTTT
AACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGACAC
Right flanking sequence: Indices 106460 -- 106959
ACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCTCGCA
AGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCA
CGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTC
GCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTC
GCACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCA
TTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCT
TTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTG
CTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGA
Found at i:106440 original size:37 final size:37
Alignment explanation
Indices: 106384--106472 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
106374 AACTTTCTGG
*
106384 ACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCTC
1 ACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCGC
* *
106421 TCACTAAAAGCACTCGCACGCAAGTCAAAGCACTCGC
1 ACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCGC
106458 ACACTCAAAGCACTC
1 ACACTCAAAGCACTC
106473 TATCGCTCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.36, C:0.37, G:0.13, T:0.13
Consensus pattern (37 bp):
ACACTCAAAGCACTCGCACGCAAGTCAAAGCACTCGC
Left flanking sequence: Indices 105884 -- 106383
GGTGTTGGGTTCTTCCAACCGTTCAGTTCTTCCAACCGTGAAGGTCAGCATTCCGTTTCTTCTTC
CTTGGTTGTTGACACACCATACGGCTGTAGTTGGGTGATGGCATTTGGCAGGCCTGTCAGTGTTC
CGCCCGTATCACAGGGGGTGTACCCGGAGTGATACCCTATACAAGGCGGCGCCCCTATTCCCTCT
AAAGCCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGACAGATGGCAAAATGCAA
TCCGAATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAGAACTGACATGATAGCTT
AACTTAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGTAACAATGTGTGAACCTC
CGCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTCTTTTCTTAATAGAGTGG
TTTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGG
Right flanking sequence: Indices 106473 -- 106972
TATCGCTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTC
GCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGC
ATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCA
CTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTT
TGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGC
TCGCAAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGA
GCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGC
Found at i:106467 original size:17 final size:18
Alignment explanation
Indices: 106385--106492 Score: 87
Period size: 17 Copynumber: 5.9 Consensus size: 18
106375 ACTTTCTGGA
106385 CACTCAAAGCACTCGCAC
1 CACTCAAAGCACTCGCAC
* * *
106403 GCAAGTCAAAGCACTCTC-T
1 -C-ACTCAAAGCACTCGCAC
*
106422 CACTAAAAGCACTCGCAC
1 CACTCAAAGCACTCGCAC
*
106440 GCAAGTCAAAGCACTCGCA-
1 -C-ACTCAAAGCACTCGCAC
* *
106459 CACTCAAAGCACTC-TAT
1 CACTCAAAGCACTCGCAC
*
106476 CGCTCAAAGCACTCGCA
1 CACTCAAAGCACTCGCA
106493 ATATACGCGA
Statistics
Matches: 70, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
16 1 0.01
17 37 0.53
18 3 0.04
19 2 0.03
20 27 0.39
ACGTcount: A:0.34, C:0.37, G:0.14, T:0.15
Consensus pattern (18 bp):
CACTCAAAGCACTCGCAC
Left flanking sequence: Indices 105885 -- 106384
GTGTTGGGTTCTTCCAACCGTTCAGTTCTTCCAACCGTGAAGGTCAGCATTCCGTTTCTTCTTCC
TTGGTTGTTGACACACCATACGGCTGTAGTTGGGTGATGGCATTTGGCAGGCCTGTCAGTGTTCC
GCCCGTATCACAGGGGGTGTACCCGGAGTGATACCCTATACAAGGCGGCGCCCCTATTCCCTCTA
AAGCCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGACAGATGGCAAAATGCAAT
CCGAATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAGAACTGACATGATAGCTTA
ACTTAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGTAACAATGTGTGAACCTCC
GCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTCTTTTCTTAATAGAGTGGT
TTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGA
Right flanking sequence: Indices 106493 -- 106992
ATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTA
AGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCA
AGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCA
TTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCACAAAGCGCTCGCAAGT
CAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTG
CATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATG
CTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAG
CTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCT
Found at i:106545 original size:43 final size:43
Alignment explanation
Indices: 106497--106802 Score: 270
Period size: 49 Copynumber: 6.8 Consensus size: 43
106487 CTCGCAATAT
106497 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
1 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
*
106540 ACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGC
1 ACGCGATGCTTTGCA--CA----AAGCGCTCGCAAGTCAAAGCACTCGC
*
106589 ACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGT-----CA---GC
1 ACGCGATGCTTTGC----A--CAAAGCGCTCGCAAGTCAAAGCACTCGC
* *
106630 ACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTC-T
1 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
*
106672 ATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGC
1 A-CGCGATGCTTTGC----A--CAAAGCGCTCGCAAGTCAAAGCACTCGC
106722 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
1 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
**
106765 AATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
1 -----ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCA
106803 GCACGCGATG
Statistics
Matches: 220, Mismatches: 12, Indels: 57
0.76 0.04 0.20
Matches are distributed among these distances:
35 15 0.07
37 1 0.00
40 2 0.01
41 15 0.07
42 1 0.00
43 54 0.25
44 2 0.01
45 2 0.01
47 1 0.00
48 31 0.14
49 92 0.42
50 1 0.00
53 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (43 bp):
ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGC
Left flanking sequence: Indices 105997 -- 106496
CAGGCCTGTCAGTGTTCCGCCCGTATCACAGGGGGTGTACCCGGAGTGATACCCTATACAAGGCG
GCGCCCCTATTCCCTCTAAAGCCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGA
CAGATGGCAAAATGCAATCCGAATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAG
AACTGACATGATAGCTTAACTTAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGT
AACAATGTGTGAACCTCCGCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTC
TTTTCTTAATAGAGTGGTTTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGACA
CTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCACTCGCACGCAAGTCAAAGC
ACTCGCACACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATAT
Right flanking sequence: Indices 106803 -- 107302
GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTT
GCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGTTG
AGCTTTGCTCGCGACCCTCGCGACGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGAAGG
TTGAGCTTTGCTCCCGACGTTTGAGCTTTGCTCGAATAATTGGATCAGGAGTTTTTCGAGAAAAG
GTCCCATCCTTCCAACTCATGATTGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGG
CCAGATCATGAGTGAAATATCATGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGA
CGGCCAGATCATGAGTGAATAGAAAATCAAAAACGTACATTGCTG
Found at i:106652 original size:133 final size:133
Alignment explanation
Indices: 106497--106736 Score: 428
Period size: 133 Copynumber: 1.8 Consensus size: 133
106487 CTCGCAATAT
*
106497 ACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCATTAAGT
1 ACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTC-CATCGCGATGCTTTGCATTAAGT
**
106561 TCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGT
65 GAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGT
106626 CAGC
130 CAGC
*
106630 ACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTCTATCGCGATGCTTTGCATTAAGTG
1 ACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCATTAAGTG
106695 AAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCA
66 AAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCA
106737 CAAAGCGCTC
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
132 1 0.01
133 101 0.99
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (133 bp):
ACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTCCATCGCGATGCTTTGCATTAAGTG
AAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
AGC
Left flanking sequence: Indices 105997 -- 106496
CAGGCCTGTCAGTGTTCCGCCCGTATCACAGGGGGTGTACCCGGAGTGATACCCTATACAAGGCG
GCGCCCCTATTCCCTCTAAAGCCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGA
CAGATGGCAAAATGCAATCCGAATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAG
AACTGACATGATAGCTTAACTTAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGT
AACAATGTGTGAACCTCCGCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTC
TTTTCTTAATAGAGTGGTTTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGACA
CTCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCACTCGCACGCAAGTCAAAGC
ACTCGCACACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATAT
Right flanking sequence: Indices 106737 -- 107236
CAAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTC
AGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGC
AAGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTT
TGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGTT
GAGCTTTGCTCGCGACCCTCGCGACGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGAAG
GTTGAGCTTTGCTCCCGACGTTTGAGCTTTGCTCGAATAATTGGATCAGGAGTTTTTCGAGAAAA
GGTCCCATCCTTCCAACTCATGATTGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACG
GCCAGATCATGAGTGAAATATCATGATCGGGTCGACCTGTAGTCT
Found at i:106668 original size:84 final size:78
Alignment explanation
Indices: 106563--106889 Score: 321
Period size: 84 Copynumber: 4.0 Consensus size: 78
106553 CATTAAGTTC
106563 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCA
1 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCA-T---T--AAGCGCTCGCAAGTCA
*
106628 GCACGCGATGCTTTACACA
60 GCACGCGATGCTTTGCACA
*
106647 AAGCGCTCGCAAGTCAAAGCACTC-TATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTC
1 AAGCGCTCGCAAGTCAAAGCACTCGCA-CGCGATGCTTTGCA-T---T--AAGCGCTCGCAAGT-
106711 AAAGCACTCGCACGCGATGCTTTGCACA
58 ----CA---GCACGCGATGCTTTGCACA
106739 AAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAG
1 AAGCGCTCGCAAGTCAAAGCACTCGC-----ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAG
**
106804 CACGCGATGCTTTGCATT
61 CACGCGATGCTTTGCACA
106822 AAGCGCTCGCAAGT-----CA---GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGC
1 AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGC
106879 GATGCTTTGCA
66 GATGCTTTGCA
106890 TTAAGTGAAA
Statistics
Matches: 223, Mismatches: 5, Indels: 44
0.82 0.02 0.16
Matches are distributed among these distances:
70 50 0.22
75 2 0.01
78 2 0.01
83 32 0.14
84 60 0.27
86 2 0.01
89 2 0.01
91 14 0.06
92 42 0.19
93 1 0.00
96 1 0.00
97 14 0.06
98 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (78 bp):
AAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGC
GATGCTTTGCACA
Left flanking sequence: Indices 106063 -- 106562
CGCCCCTATTCCCTCTAAAGCCACTCACCCTAGGGTACCTGCGCTCACTGATTCCACTTTTTGAC
AGATGGCAAAATGCAATCCGAATGGGTCAGACAGACTGGCGAAAAAAGAGGAAGAGGACATCAGA
ACTGACATGATAGCTTAACTTAACCCAATCTTGCTATCAGATCTTTTGATACCAGACATTGCGTA
ACAATGTGTGAACCTCCGCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTCT
TTTCTTAATAGAGTGGTTTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGACAC
TCAAAGCACTCGCACGCAAGTCAAAGCACTCTCTCACTAAAAGCACTCGCACGCAAGTCAAAGCA
CTCGCACACTCAAAGCACTCTATCGCTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGC
GCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAAGTTC
Right flanking sequence: Indices 106890 -- 107389
TTAAGTGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCT
CGCGACGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGTTGAGCTTTGCTCGCGACCCTCGCG
ACGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGACGTTT
GAGCTTTGCTCGAATAATTGGATCAGGAGTTTTTCGAGAAAAGGTCCCATCCTTCCAACTCATGA
TTGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAAATATCA
TGATCGGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAATAG
AAAATCAAAAACGTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTACTAG
GAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTCATGGCTTTTG
Found at i:106811 original size:35 final size:35
Alignment explanation
Indices: 106770--106894 Score: 250
Period size: 35 Copynumber: 3.6 Consensus size: 35
106760 CTCGCAATAT
106770 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
106805 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
106840 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
1 ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
106875 ACGCGATGCTTTGCATTAAG
1 ACGCGATGCTTTGCATTAAG
106895 TGAAAGCGCT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 90 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (35 bp):
ACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGC
Left flanking sequence: Indices 106270 -- 106769
CCTCCGCGAGTCCGGGTTTCACACTAGCCATTCCTGGACGGAACCCACCTTCTTTTCTTAATAGA
GTGGTTTTAACTAGCCATTCAGTCTCCATGGAAGAGATCAACTTTCTGGACACTCAAAGCACTCG
CACGCAAGTCAAAGCACTCTCTCACTAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCA
AAGCACTCTATCGCTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCA
AAGCACTCGCACGCGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGA
TGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAG
TCAAAGCACTCTATCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACG
CGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCAATAT
Right flanking sequence: Indices 106895 -- 107394
TGAAAGCGCTCGCAAGAGTGCTCGCGACGTTGAGCTTTGCTCGCGACGTTGAGCTTTGCTCGCGA
CGTTGAGCTTTGCTCGCGACGTTTCACTTTGCTCGTTGAGCTTTGCTCGCGACCCTCGCGACGTT
GAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGAAGGTTGAGCTTTGCTCCCGACGTTTGAGCT
TTGCTCGAATAATTGGATCAGGAGTTTTTCGAGAAAAGGTCCCATCCTTCCAACTCATGATTGGG
TCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAAATATCATGATC
GGGTCGACCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAATAGAAAAT
CAAAAACGTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTACTAGGAGTA
GCCTTTTTAGTGCTAGCTGAACGTAAAGTCATGGCTTTTGTGCAA
Found at i:106937 original size:19 final size:19
Alignment explanation
Indices: 106913--107096 Score: 172
Period size: 19 Copynumber: 9.3 Consensus size: 19
106903 CTCGCAAGAG
106913 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
106932 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
106951 TGCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
*
106970 TGCTCGCGACGTTTCA-CTT
1 TGCTCGCGACG-TTGAGCTT
* * * **
106989 TGCTCGTTGAGCTTTGCTCGCGA
1 TGCTCG-CGA-CGTTG--AGCTT
**
107012 CCCTCGCGACGTTGAGCTT
1 TGCTCGCGACGTTGAGCTT
* *
107031 TGCTCCCGAAGGTTGAGCTT
1 TGCTCGCG-ACGTTGAGCTT
* *
107051 TGCTCCCGAAGGTTGAGCTT
1 TGCTCGCG-ACGTTGAGCTT
*
107071 TGCTCCCGACGTTTGAGCTT
1 TGCTCGCGACG-TTGAGCTT
107091 TGCTCG
1 TGCTCG
107097 AATAATTGGA
Statistics
Matches: 137, Mismatches: 20, Indels: 15
0.80 0.12 0.09
Matches are distributed among these distances:
19 67 0.49
20 58 0.42
21 5 0.04
22 2 0.01
23 5 0.04
ACGTcount: A:0.11, C:0.28, G:0.29, T:0.32
Consensus pattern (19 bp):
TGCTCGCGACGTTGAGCTT
Left flanking sequence: Indices 106413 -- 106912
GCACTCTCTCACTAAAAGCACTCGCACGCAAGTCAAAGCACTCGCACACTCAAAGCACTCTATCG
CTCAAAGCACTCGCAATATACGCGATGCTTTGCACAAAGCGCTCGCAAGTCAAAGCACTCGCACG
CGATGCTTTGCATTAAGTTCAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCATTAA
GTGAAAGCGCTCGCAAGTCAGCACGCGATGCTTTACACAAAGCGCTCGCAAGTCAAAGCACTCTA
TCGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGTCAAAGCACTCGCACGCGATGCTTTGCAC
AAAGCGCTCGCAAGTCAAAGCACTCGCAATATACGCGATGCTTTGCATTAAGCGCTCGCAAGTCA
GCACGCGATGCTTTGCATTAAGCGCTCGCAAGTCAGCACGCGATGCTTTGCATTAAGCGCTCGCA
AGTCAGCACGCGATGCTTTGCATTAAGTGAAAGCGCTCGCAAGAG
Right flanking sequence: Indices 107097 -- 107596
AATAATTGGATCAGGAGTTTTTCGAGAAAAGGTCCCATCCTTCCAACTCATGATTGGGTCGACCT
GTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAAATATCATGATCGGGTCGA
CCTGTAGTCTCTTTTAGTAGACTACACTTGACGGCCAGATCATGAGTGAATAGAAAATCAAAAAC
GTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTACTAGGAGTAGCCTTTT
TAGTGCTAGCTGAACGTAAAGTCATGGCTTTTGTGCAACGTCGAAAGGGCCCTGATGTAGTGGGA
TTGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATGATAAAAGAACCTCTTTCCCC
AAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCG
CTTGGGCCGTTGTACCTTTTTCTTATGGTATGGTATTGTCAGATC
Done.