Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 6 of 20
Found at i:165317 original size:43 final size:43
Alignment explanation
Indices: 165141--165323 Score: 154
Period size: 43 Copynumber: 4.2 Consensus size: 43
165131 AATTGCAATG
* * *
165141 AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAG-AAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCTAGTAAG-ATC
* * * *
165184 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCTAGTAAGATC
* * * * * * * *
165227 AGTACTGATGACATACAA-ATGAGTCTTGACCTTTCCAGAAAAATC
1 AGTCCTGA--CCTTTCAAGA-CAGTCTTGACCTTTCTAGTAAGATC
* * *
165272 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCTAGTAAGATC
165315 AGTCCTGAC
1 AGTCCTGAC
165324 TGTGAAATAC
Statistics
Matches: 107, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
43 73 0.68
44 5 0.05
45 29 0.27
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCTAGTAAGATC
Left flanking sequence: Indices 164641 -- 165140
GAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTC
AGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACT
CATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCC
ATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAA
TGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCAC
TAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TCTCATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 165324 -- 165823
TGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
TGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAG
AAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATCCGTCAA
Found at i:165459 original size:28 final size:29
Alignment explanation
Indices: 165416--165535 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
165406 GTTGATGGAA
165416 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
165444 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
165472 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
165500 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
165528 AATGGCAT
1 AATGGCAT
165536 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 164916 -- 165415
CCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAATGGCATCTCCTTTTT
TTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTT
GGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATCTCATTTTTGGTCA
AGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 165536 -- 166035
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CATCATTTCCTTTCCATCAATCCGTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGT
GCTTTGTGGGCTTTGCTAATAACGTGACGTTAGGCCTTTCAGATTGGCTGCCTCGCCCCCTCTTC
CCAATAGGAATGGAAATCGACCCTTGCCCTGCCCCCCTTACTCGTCCTTTTCAAGCTGTACCAGT
GCTATGTTCCGCATTCTATGGCGGAGTGTAGAGTAAGCTCCGTAA
Found at i:165653 original size:43 final size:43
Alignment explanation
Indices: 165605--165688 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
165595 CTGATCTTTC
* *
165605 AAGACAGTCTTGATCTTTTTG-GTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGAG-AAGGTGAGTCCTGACTTTGA
*
165648 AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTCCTGACTTT
165689 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 36 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 165105 -- 165604
TGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCCTGACC
TTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTT
TCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 165689 -- 166188
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATCC
GTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTAATAAC
GTGACGTTAGGCCTTTCAGATTGGCTGCCTCGCCCCCTCTTCCCAATAGGAATGGAAATCGACCC
TTGCCCTGCCCCCCTTACTCGTCCTTTTCAAGCTGTACCAGTGCTATGTTCCGCATTCTATGGCG
GAGTGTAGAGTAAGCTCCGTAATCGCTATGCTCTTACTAGAGAGATAAGATAGGGGAAGGTAGCG
CATCAGGGTTTGGAGCGCCCGCCCATGAAGAGAGAGATCCATCAGGTGGCCACCCTTCCTTCGTA
TCAGGGTCAGGTAGCGCATCCCCAGTAGATAGACCCTAACCCTTC
Found at i:165748 original size:19 final size:16
Alignment explanation
Indices: 165707--165737 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
165697 CATTCTCATT
165707 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
165723 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
165738 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 165207 -- 165706
TTGACCTTTTTGGTAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGAAAAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 165738 -- 166237
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCATT
TCCTTTCCATCAATCCGTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCTTTGT
GGGCTTTGCTAATAACGTGACGTTAGGCCTTTCAGATTGGCTGCCTCGCCCCCTCTTCCCAATAG
GAATGGAAATCGACCCTTGCCCTGCCCCCCTTACTCGTCCTTTTCAAGCTGTACCAGTGCTATGT
TCCGCATTCTATGGCGGAGTGTAGAGTAAGCTCCGTAATCGCTATGCTCTTACTAGAGAGATAAG
ATAGGGGAAGGTAGCGCATCAGGGTTTGGAGCGCCCGCCCATGAAGAGAGAGATCCATCAGGTGG
CCACCCTTCCTTCGTATCAGGGTCAGGTAGCGCATCCCCAGTAGATAGACCCTAACCCTTCCTTC
GGAAGGGGTTCTCCCGAAGTGAGTGCTTTATCCCAGCGAAAGAAG
Found at i:170094 original size:28 final size:28
Alignment explanation
Indices: 170053--170135 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
170043 TGAGTACTCA
* *
170053 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
170081 TGTTTGT-CAAGTGAGTACTAATGGCATT
1 TGTTTGTAC-AGTGAGTACTAATGGCATT
170109 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
170136 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 50 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.10, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 169553 -- 170052
TCTCTTTCAAGCAAGGTGGGAAGCAAAGTCTCCGGAAGGCGGAACGGGGATAATCTTTCATAGAT
GAGGATGAATCTATGAATGACGCTTCTGCCGGCCGACGGAGCCATGAGCGGTCCAATAATGAAAC
TACTTCTTTCCACCACCAACCACGGAAACTTCCTCAGACGTCGGGCAAAGTGAGAACCGGAACTT
CGCGGACTTTCGAAGGTTATCCCGTCAAAGCACTCGCAAAGTTCACCGTAGGGCAAAGCACGCAC
TCGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGT
CAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 170136 -- 170635
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Found at i:170297 original size:95 final size:98
Alignment explanation
Indices: 170119--170298 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
170109 TGTTTGTACA
* *
170119 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
170184 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
170218 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
170279 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
170299 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 169619 -- 170118
AGGATGAATCTATGAATGACGCTTCTGCCGGCCGACGGAGCCATGAGCGGTCCAATAATGAAACT
ACTTCTTTCCACCACCAACCACGGAAACTTCCTCAGACGTCGGGCAAAGTGAGAACCGGAACTTC
GCGGACTTTCGAAGGTTATCCCGTCAAAGCACTCGCAAAGTTCACCGTAGGGCAAAGCACGCACT
CGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTC
AGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACT
AATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 170299 -- 170798
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAG
TCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAG
Found at i:170328 original size:43 final size:43
Alignment explanation
Indices: 170281--170479 Score: 195
Period size: 43 Copynumber: 4.9 Consensus size: 43
170271 CTGACCTTTC
* *
170281 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
170324 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
170367 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
170400 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
170443 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
170480 TGACATACAA
Statistics
Matches: 125, Mismatches: 19, Indels: 24
0.74 0.11 0.14
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 20 0.16
39 3 0.02
41 1 0.01
43 85 0.68
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 169781 -- 170280
TCGCAAAGTTCACCGTAGGGCAAAGCACGCACTCGCAAAGCGAATCGACAAAGCACTCGCAACTT
CAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATT
CAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATA
CAATTTGTTTTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 170480 -- 170979
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCA
CCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:170337 original size:19 final size:19
Alignment explanation
Indices: 170310--170380 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
170300 TGGTCAGGTT
*
170310 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
170329 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
170353 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
170372 AGTCTTGAC
1 AGTCCTGAC
170381 CAGAAGAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 169810 -- 170309
CACTCGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCA
GGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAG
CACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 170381 -- 170880
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
Found at i:170642 original size:43 final size:43
Alignment explanation
Indices: 170609--170764 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
170599 CTGACCTTTC
170609 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
170652 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
170685 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
170728 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
170765 TGACATACAA
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.14
35 1 0.01
37 3 0.03
38 21 0.24
39 3 0.03
41 1 0.01
43 46 0.53
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 170109 -- 170608
TGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
CAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
Right flanking sequence: Indices 170765 -- 171264
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
Found at i:170855 original size:24 final size:24
Alignment explanation
Indices: 170823--170868 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
170813 ACTTTTCCAT
170823 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
170847 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
170869 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 170323 -- 170822
AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCT
GACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCAT
Right flanking sequence: Indices 170869 -- 171368
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:171007 original size:43 final size:42
Alignment explanation
Indices: 170946--171137 Score: 163
Period size: 43 Copynumber: 4.7 Consensus size: 42
170936 TTCCATCAAA
* * *
170946 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
170989 AGTCCTGACTTTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
171027 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
171065 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
171108 AGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTT
171138 CCATTTTTGG
Statistics
Matches: 118, Mismatches: 18, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 2 0.02
38 20 0.17
39 3 0.03
41 19 0.16
42 7 0.06
43 54 0.46
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 170446 -- 170945
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 171138 -- 171637
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTCCTGACCTTTCCAGAGAG
TCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAG
GCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
Found at i:171262 original size:43 final size:42
Alignment explanation
Indices: 171201--171370 Score: 153
Period size: 43 Copynumber: 4.2 Consensus size: 42
171191 TTCCATCAAA
*
171201 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
171244 AGTCCTGACTTTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
171282 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
171320 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
171363 AGTACTGA
1 AGTCCTGA
171371 TGACATACAA
Statistics
Matches: 100, Mismatches: 14, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 4 0.04
43 54 0.54
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 170701 -- 171200
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 171371 -- 171870
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAG
AATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAG
CACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTC
AAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
Found at i:171312 original size:255 final size:255
Alignment explanation
Indices: 170861--171371 Score: 986
Period size: 255 Copynumber: 2.0 Consensus size: 255
170851 AGTCCTGACC
170861 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
* *
170926 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
170991 TCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
*
171056 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
196 GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
171116 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
171181 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
171246 TCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
*
171311 GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
196 GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
171371 T
1 T
171372 GACATACAAA
Statistics
Matches: 252, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 252 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (255 bp):
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 170361 -- 170860
CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACT
TTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 171372 -- 171871
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAGA
ATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAGC
ACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Found at i:171471 original size:28 final size:25
Alignment explanation
Indices: 171419--171472 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 25
171409 TTCTCATTAG
* *
171419 TCCTGACCTTTCAGAGTCTTGACCT
1 TCCTGACCTTTCAGAGTCCTCACCT
171444 TCCTGACCTTTCCAGAGAGTCCTCACCT
1 TCCTGACCTTT-C--AGAGTCCTCACCT
171472 T
1 T
171473 TCTAGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 1 0.04
28 12 0.50
ACGTcount: A:0.17, C:0.35, G:0.15, T:0.33
Consensus pattern (25 bp):
TCCTGACCTTTCAGAGTCCTCACCT
Left flanking sequence: Indices 170919 -- 171418
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTC
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACT
GATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
Right flanking sequence: Indices 171473 -- 171972
TCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATG
ACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGA
CTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
Found at i:171775 original size:43 final size:42
Alignment explanation
Indices: 171711--172135 Score: 155
Period size: 43 Copynumber: 10.2 Consensus size: 42
171701 TTGTATGTCA
* * *
171711 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
171754 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* *
171792 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
*
171830 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * * * * * *
171873 TCAGGACT---TTTGATGGAAGGACAGGACCAATTGCAATTGTATGC-CA-
1 TCAGGACTGACCTT-A-CCAA--AAAGG-TCAA--G--ACTGTCTTCAAAG
* * * * *
171919 TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTACCAAAAA--G---G-TCAAGACTGTCTTCAAAG
* *
171966 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * *
172009 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* *
172047 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
172085 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
172128 TCAGGACT
1 TCAGGACT
172136 TTTGATGGAA
Statistics
Matches: 276, Mismatches: 60, Indels: 92
0.64 0.14 0.21
Matches are distributed among these distances:
33 22 0.08
35 2 0.01
37 9 0.03
38 38 0.14
39 10 0.04
40 2 0.01
41 14 0.05
42 18 0.07
43 104 0.38
44 4 0.01
45 6 0.02
46 11 0.04
47 23 0.08
48 3 0.01
49 6 0.02
50 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 171211 -- 171710
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTCACC
TTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAA
TGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 172136 -- 172635
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCAC
TGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGT
Found at i:171828 original size:76 final size:77
Alignment explanation
Indices: 171733--172124 Score: 269
Period size: 76 Copynumber: 4.8 Consensus size: 77
171723 TTATCAAAAA
*
171733 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAATCAG
171796 GACTGATTCTTCT
66 GACTGATT-TTCT
* * *
171809 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA--T
**
171874 CAGGACT--TTTGAT
63 CAGGACTGATTTTCT
* * * * * * *
171887 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTAACCTTACCAAAAA--G--A--T
* * * *
171950 CAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
47 CAAGACTATCTTG-AATCAGGACTGA--TTTTC----T
171988 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAATCAG
172051 GACTGATTCTTCT
66 GACTGATT-TTCT
* * *
172064 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAA
172125 AGGTCAGGAC
Statistics
Matches: 248, Mismatches: 31, Indels: 72
0.71 0.09 0.21
Matches are distributed among these distances:
76 109 0.44
77 7 0.03
78 6 0.02
79 6 0.02
80 2 0.01
81 23 0.09
83 2 0.01
84 10 0.04
85 1 0.00
86 2 0.01
88 1 0.00
89 18 0.07
90 18 0.07
91 1 0.00
93 8 0.03
94 1 0.00
95 17 0.07
97 2 0.01
98 5 0.02
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (77 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAATCAG
GACTGATTTTCT
Left flanking sequence: Indices 171233 -- 171732
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCCT
TTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTC
AGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 172125 -- 172624
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACT
CTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTC
CATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCA
TTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCT
GGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTG
Found at i:171990 original size:41 final size:43
Alignment explanation
Indices: 171944--172135 Score: 160
Period size: 43 Copynumber: 4.7 Consensus size: 43
171934 CCAAAAATGG
* * * *
171944 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
171985 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
172028 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* *
172063 --TGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
172104 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
172136 TTTGATGGAA
Statistics
Matches: 118, Mismatches: 18, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 5 0.04
38 16 0.14
39 6 0.05
41 17 0.14
42 10 0.08
43 52 0.44
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 171444 -- 171943
TCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAA
TTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTC
AGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 172136 -- 172635
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCAC
TGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGT
Found at i:172008 original size:255 final size:255
Alignment explanation
Indices: 171710--172220 Score: 986
Period size: 255 Copynumber: 2.0 Consensus size: 255
171700 TTTGTATGTC
*
171710 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
171775 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
*
171840 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
171905 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
*
171965 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
172030 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
172095 CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
172160 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
172220 A
1 A
172221 GGTCAGGACT
Statistics
Matches: 252, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 252 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (255 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
Left flanking sequence: Indices 171210 -- 171709
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTCAC
CTTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACA
ATGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCA
GGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 172221 -- 172720
GGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTA
GTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
Found at i:172242 original size:24 final size:22
Alignment explanation
Indices: 172213--172275 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 22
172203 GTCAAGACTG
172213 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTC--TCT
*
172237 TCTTGAAAGGTGAGGA--CTCT
1 TCTTGAAAGGTCAGGACTCTCT
172257 T-TTGAAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGGACTCT
172276 GAAAGGTCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
19 13 0.37
20 4 0.11
21 2 0.06
22 1 0.03
24 15 0.43
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTCTCT
Left flanking sequence: Indices 171713 -- 172212
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 172276 -- 172775
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
Found at i:172263 original size:19 final size:20
Alignment explanation
Indices: 172198--172275 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 20
172188 ACCAAAAATG
* *
172198 GAAAGGTCAAGACT-GTCTT
1 GAAAGGTCAGGACTCTTCTT
172217 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGA--C--TCTTCTT
*
172241 GAAAGGTGAGGACTCTT-TT
1 GAAAGGTCAGGACTCTTCTT
172260 GAAAGGTCAGGACTCT
1 GAAAGGTCAGGACTCT
172276 GAAAGGTCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
19 28 0.56
20 4 0.08
21 1 0.02
22 1 0.02
23 1 0.02
24 15 0.30
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (20 bp):
GAAAGGTCAGGACTCTTCTT
Left flanking sequence: Indices 171698 -- 172197
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAA
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 172276 -- 172775
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
Found at i:172280 original size:16 final size:17
Alignment explanation
Indices: 172237--172289 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 17
172227 GACTCATTCT
*
172237 TCTTGAAAGGTGAGGAC
1 TCTTGAAAGGTCAGGAC
172254 TCTTTTGAAAGGTCAGGAC
1 TC--TTGAAAGGTCAGGAC
172273 TC-TGAAAGGTCAGGAC
1 TCTTGAAAGGTCAGGAC
172289 T
1 T
172290 AATGAGAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 15 0.45
17 2 0.06
19 16 0.48
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (17 bp):
TCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 171737 -- 172236
AAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
Right flanking sequence: Indices 172290 -- 172789
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTAGTAC
TCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAG
ATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
Found at i:172445 original size:28 final size:27
Alignment explanation
Indices: 172362--172488 Score: 136
Period size: 28 Copynumber: 4.6 Consensus size: 27
172352 TTGCAATTGT
172362 ATGCCATTAGTACTCACTTGACAACAA
1 ATGCCATTAGTACTCACTTGACAACAA
* *
172389 ATTG-TA-T-GTCTCTCACTTGACAACAAA
1 A-TGCCATTAGT-ACTCACTTGACAAC-AA
172416 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGAC-AACAA
*
172444 ATGTCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-AC-AACAA
*
172472 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
172489 CATACCAAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
25 2 0.02
26 16 0.18
27 8 0.09
28 56 0.64
29 5 0.06
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTTGACAACAA
Left flanking sequence: Indices 171862 -- 172361
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 172489 -- 172988
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
Found at i:172486 original size:56 final size:54
Alignment explanation
Indices: 172362--172488 Score: 154
Period size: 56 Copynumber: 2.3 Consensus size: 54
172352 TTGCAATTGT
*
172362 ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCACTCACTTGACAACAAA
172416 ATGCCATTAGTACTCACTTGACAAACAAA-TGTCATTAGT-ACTCAC-TGTACAA-ACAA
1 ATGCCATTAGTACTCACTTGAC-AACAAATTGT-A-T-GTCACTCACTTG-ACAACA-AA
*
172472 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
172489 CATACCAAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
54 25 0.38
55 10 0.15
56 28 0.43
57 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (54 bp):
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCACTCACTTGACAACAAA
Left flanking sequence: Indices 171862 -- 172361
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 172489 -- 172988
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
Found at i:172524 original size:19 final size:17
Alignment explanation
Indices: 172500--172545 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
172490 ATACCAAAAC
172500 AGGTCAGGACTGTCTGGAA
1 AGGTCAGGACT-TCT-GAA
*
172519 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
172535 AGGTCAGGACT
1 AGGTCAGGACT
172546 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 172000 -- 172499
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTT
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATAC
AGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGT
ACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 172546 -- 173045
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
Found at i:172825 original size:43 final size:43
Alignment explanation
Indices: 172656--172811 Score: 154
Period size: 43 Copynumber: 3.9 Consensus size: 43
172646 TTGTATGTCA
* * *
172656 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
172699 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
172737 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
172775 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
172812 GAAAGGTCAG
Statistics
Matches: 88, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.06
38 20 0.23
39 5 0.06
41 1 0.01
43 45 0.51
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 172156 -- 172655
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTA
GTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 172812 -- 173311
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
Found at i:172883 original size:285 final size:285
Alignment explanation
Indices: 172571--173134 Score: 979
Period size: 285 Copynumber: 2.0 Consensus size: 285
172561 GGAATGACCA
* ****
172571 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGA-AAGG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTCACCTGACAA--
*
172635 T-CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
64 TACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
*
172699 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
129 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
172764 GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCAT
194 GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCAT
*
172829 TCTTCTTGAAAGGTCAGGACTTTCCGG
259 TCTTCTTGAAAGGTCAAGACTTTCCGG
* * *
172856 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATA
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTCACCTGACAATA
172921 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
66 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
172986 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
131 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
* *
173051 CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
196 CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
173116 TTCTTGAAAGGTCAAGACT
261 TTCTTGAAAGGTCAAGACT
173135 GTCTTGAAAT
Statistics
Matches: 264, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
284 1 0.00
285 262 0.99
286 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (285 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTCACCTGACAATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAAGACTTTCCGG
Left flanking sequence: Indices 172071 -- 172570
ACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCAC
TGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 173135 -- 173634
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
Found at i:173004 original size:43 final size:42
Alignment explanation
Indices: 172941--173313 Score: 239
Period size: 43 Copynumber: 9.2 Consensus size: 42
172931 TTGTATGTCA
* * *
172941 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
172984 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
173022 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
173060 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
173103 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
173144 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
173187 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
173225 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
173263 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
173306 TCAGGACT
1 TCAGGACT
173314 TTTGATGGAA
Statistics
Matches: 250, Mismatches: 52, Indels: 56
0.70 0.15 0.16
Matches are distributed among these distances:
33 21 0.08
35 2 0.01
37 11 0.04
38 32 0.13
39 12 0.05
41 29 0.12
42 13 0.05
43 130 0.52
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 172441 -- 172940
CAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCA
GGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 173314 -- 173813
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAG
Found at i:173103 original size:19 final size:19
Alignment explanation
Indices: 173079--173143 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
173069 ACCTTACCAA
173079 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
173098 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
173122 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
173141 AAA
1 AAA
173144 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 172579 -- 173078
CATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCA
GGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 173144 -- 173643
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
Found at i:173190 original size:84 final size:86
Alignment explanation
Indices: 172960--173194 Score: 255
Period size: 76 Copynumber: 2.9 Consensus size: 86
172950 ACCTTATCAA
* * *
172960 AAAGGTCAAGACTGTCTTTCA-AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T---
1 AAAGGTCAAGACTGTCTTTCACAA-TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAA
* *
173020 -GATCAGGACTGATTCTTC-T-
65 AGGTCAGGACTGATTTTTCTTG
* *
173039 ---GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTTCACAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA
173101 GGTCAGGACTGATTTTTCTTG
66 GGTCAGGACTGATTTTTCTTG
* * * *
173122 AAAGGTCAAGACTGTC-TTGA-AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AAAGGTCAAGACTGTCTTTCACAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAA
173185 A-GTCAGGACT
65 AGGTCAGGACT
173195 AACCTTACCA
Statistics
Matches: 132, Mismatches: 12, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
76 50 0.38
77 2 0.02
81 16 0.12
82 1 0.01
84 43 0.33
85 7 0.05
86 13 0.10
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (86 bp):
AAAGGTCAAGACTGTCTTTCACAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA
GGTCAGGACTGATTTTTCTTG
Left flanking sequence: Indices 172460 -- 172959
CTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
TTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 173195 -- 173694
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
Found at i:173191 original size:203 final size:203
Alignment explanation
Indices: 172940--173313 Score: 703
Period size: 203 Copynumber: 1.8 Consensus size: 203
172930 TTTGTATGTC
172940 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
* * *
173005 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
173070 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
173135 GTCTTGAA
196 GTCTTGAA
* *
173143 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
173208 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
173273 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
173314 TTTGATGGAA
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 166 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (203 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAA
Left flanking sequence: Indices 172440 -- 172939
ACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTC
AGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTC
Right flanking sequence: Indices 173314 -- 173813
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAG
Found at i:173204 original size:127 final size:119
Alignment explanation
Indices: 173039--173299 Score: 337
Period size: 127 Copynumber: 2.1 Consensus size: 119
173029 TGATTCTTCT
* * *
173039 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--T
* * * * *
173104 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGT-CTTGAAA-TCAGTACTGACCTTATCAAAAA
61 CAGGACTGATTCTTC-T----GGTCAAGACTGTACTTCAAAGTCAGGACTAACCTTACCAAAAA
173166 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
*
173231 CTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
66 CTGATTCTTCTGGTCAAGACTGTACTTCAAAGTCAGGACTAACCTTACCAAAAA
173285 GGTCAAGACTGTCTT
1 GGTCAAGACTGTCTT
173300 GAAAGGTCAG
Statistics
Matches: 123, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
117 12 0.10
118 5 0.04
119 34 0.28
121 1 0.01
122 15 0.12
124 1 0.01
126 2 0.02
127 53 0.43
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (119 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTACTTCAAAGTCAGGACTAACCTTACCAAAAA
Left flanking sequence: Indices 172539 -- 173038
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 173300 -- 173799
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
Found at i:173546 original size:113 final size:116
Alignment explanation
Indices: 173301--173546 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
173291 GACTGTCTTG
*
173301 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
173365 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
173420 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
173484 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
173533 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
173547 TCTTGAAAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 172801 -- 173300
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
Right flanking sequence: Indices 173547 -- 174046
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
CAGTAAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
Found at i:173557 original size:19 final size:19
Alignment explanation
Indices: 173533--173604 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
173523 ACCTTACCAA
173533 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
173552 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
173576 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
173592 AAAGGTCAGGACT
1 AAAGGTCAAGACT
173605 AATGAGAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 13 0.30
20 2 0.05
21 2 0.05
22 1 0.02
23 1 0.02
24 12 0.27
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 173033 -- 173532
TCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 173605 -- 174104
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTAAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
Found at i:173560 original size:43 final size:43
Alignment explanation
Indices: 173480--173604 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
173470 ATTAGTACTC
* * *
173480 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
173523 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
173566 ATTCTT-CTGGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
173605 AATGAGAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.05
43 49 0.67
44 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 172980 -- 173479
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 173605 -- 174104
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTAAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
Found at i:173659 original size:21 final size:21
Alignment explanation
Indices: 173635--173700 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
173625 GACCATCAAG
173635 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
** *
173656 ACTCACCTG-A--CCATACAAG-
1 ACTCATTTGTATGTCAT-C-AGT
173675 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
173696 ACTCA
1 ACTCA
173701 CCTTATCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 3 0.09
19 8 0.24
20 6 0.18
21 13 0.39
22 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (21 bp):
ACTCATTTGTATGTCATCAGT
Left flanking sequence: Indices 173135 -- 173634
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
Right flanking sequence: Indices 173701 -- 174200
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAACAATGCCAT
TTCCCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCC
Found at i:173678 original size:40 final size:39
Alignment explanation
Indices: 173624--173703 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 39
173614 GATTGAGGAA
173624 TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
1 TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
173663 TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
1 TGACCAT-CAAGACTCATTTGTATGTCATCAGTACTCACC
173703 T
1 T
173704 TATCAAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 7 0.17
40 33 0.82
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (39 bp):
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
Left flanking sequence: Indices 173124 -- 173623
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
Right flanking sequence: Indices 173704 -- 174203
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAGGACTGACCTTACCAAAAAGA
TCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAACAATGCCATTTC
CCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCCATT
Found at i:173859 original size:43 final size:43
Alignment explanation
Indices: 173691--173860 Score: 121
Period size: 43 Copynumber: 4.2 Consensus size: 43
173681 TTGTATGTCA
* * * *
173691 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCAAAG
* * *
173734 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCAAAG
* * * *
173772 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTTCAAAG
* *
173810 TAAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCAAA-G
173853 TCAGGACT
1 TCAGGACT
173861 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 18 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 173191 -- 173690
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 173861 -- 174360
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCAC
CATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAA
TTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGT
ATGCCATTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGC
TTTGCTCGTGACGTGACGTGACTGAAAGTTGCGAGTGCTTTGTGG
Found at i:173945 original size:95 final size:99
Alignment explanation
Indices: 173829--174022 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
173819 ACCTTACCAA
* *
173829 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
173890 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
173924 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
173989 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
174023 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 173329 -- 173828
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTAAGGACTGACCTTACCAA
Right flanking sequence: Indices 174023 -- 174522
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAACAATGC
CATTTCCCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTCATGCTGACCATAC
AACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACCATACCAAAAAGCTC
ATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGACTGAAAGTTGC
GAGTGCTTTGTGGGCTTTGCTCGTCAATTGACATGACGTGACGTTCGCTTCGCTATTGACTCCGC
CTCTTCGCTAAGCAGCTGCTAAGCAGCTCTCCGCCCCAGATGCTCCGCGGAGTGTTCGATGGCGG
AGCCAGCCCAGCCCTCTATCTACGTTGGTTGGTCCGCAGCCCCGC
Found at i:173967 original size:24 final size:24
Alignment explanation
Indices: 173938--173983 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
173928 GTCAAGACTG
173938 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
173962 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
173984 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 173438 -- 173937
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 173984 -- 174483
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TGCTCACCATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCT
TCCATAATTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTG
CAATTGTATGCCATTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGC
GTAGGGCTTTGCTCGTGACGTGACGTGACTGAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTCA
ATTGACATGACGTGACGTTCGCTTCGCTATTGACTCCGCCTCTTCGCTAAGCAGCTGCTAAGCAG
CTCTCCGCCCCAGATGCTCCGCGGAGTGTTCGATGGCGGAGCCAG
Found at i:174130 original size:28 final size:28
Alignment explanation
Indices: 173991--174120 Score: 251
Period size: 28 Copynumber: 4.6 Consensus size: 28
173981 ATTGCAATTC
173991 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
174019 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
174047 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
174075 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
*
174103 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
174121 CATACCAACA
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 101 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 173491 -- 173990
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTAAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 174121 -- 174620
CATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAA
TTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGT
ATGCCATTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGC
TTTGCTCGTGACGTGACGTGACTGAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTCAATTGACA
TGACGTGACGTTCGCTTCGCTATTGACTCCGCCTCTTCGCTAAGCAGCTGCTAAGCAGCTCTCCG
CCCCAGATGCTCCGCGGAGTGTTCGATGGCGGAGCCAGCCCAGCCCTCTATCTACGTTGGTTGGT
CCGCAGCCCCGCCCTATAGAATGAATAAGGAGAGGCCTCTCGATGACCGAGCCACTCTGAGACTA
CTCCTTACCTCACCCCGACCAAAGAGTGATCTTTGAACGCTACTA
Found at i:174233 original size:55 final size:55
Alignment explanation
Indices: 174167--174272 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
174157 TCCCAATGGC
* *
174167 AATTGTATGCCTTCCATAATTGCAA-TGAGATGCCATTCA-TGCTGACCATACAACA
1 AATTGTATGCCTTCAAGAATTGCAATTG-GATGCCATT-AGTGCTGACCATACAACA
*
174222 AATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACCATAC
1 AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATAC
174273 CAAAAAGCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
54 1 0.02
55 43 0.93
56 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (55 bp):
AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATACAACA
Left flanking sequence: Indices 173667 -- 174166
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTAAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACC
ATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGC
Right flanking sequence: Indices 174273 -- 174772
CAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGAC
TGAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTCAATTGACATGACGTGACGTTCGCTTCGCTA
TTGACTCCGCCTCTTCGCTAAGCAGCTGCTAAGCAGCTCTCCGCCCCAGATGCTCCGCGGAGTGT
TCGATGGCGGAGCCAGCCCAGCCCTCTATCTACGTTGGTTGGTCCGCAGCCCCGCCCTATAGAAT
GAATAAGGAGAGGCCTCTCGATGACCGAGCCACTCTGAGACTACTCCTTACCTCACCCCGACCAA
AGAGTGATCTTTGAACGCTACTACGCATCCTGACTCATAGGAGAGTTTAAGGTAGGTTTGGGTAT
AGCAGGACTTGAACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACC
CACCGTCATATTGAGTTAGTAGTCAATAAGGATTGGTGCGGAAAA
Found at i:177658 original size:28 final size:28
Alignment explanation
Indices: 177617--177699 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
177607 TGAGTACTCA
* *
177617 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
*
177645 TGTTTGTACAGTGAGTACTCATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
177673 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
177700 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 177117 -- 177616
TGAAAAAATGAAAAAAAAGTCAAGCACTCGCAACTTCAAATTCCCGTCACGTCATTTTGACGAGC
AAAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCACTCGCA
ACTTTGAACTTCAGACGTGGCAATAGGCGAATTTCAAGCTTGAAAGGCGTCATGTCACGAGCAAA
GTGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAGGGGACAACTTTGCT
CGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGT
CAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 177700 -- 178199
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTC
CTCAATCATTCTCATTAGTCCTGACCTTTAAAGAGAGTCTTGACCGGAAAGTCCTGACCTTTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCA
Found at i:177861 original size:95 final size:98
Alignment explanation
Indices: 177683--177862 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
177673 TGTTTGTACA
* *
177683 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
177748 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
177782 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
177843 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
177863 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 177183 -- 177682
AAGCCCACAAAGCACTCGCAACTTTCAATGGCGTGTCACGAGCAAAGCCCACAAAGCACTCGCAA
CTTTGAACTTCAGACGTGGCAATAGGCGAATTTCAAGCTTGAAAGGCGTCATGTCACGAGCAAAG
TGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAGGGGACAACTTTGCTC
GCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTC
AGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACT
AATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACA
Right flanking sequence: Indices 177863 -- 178362
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTAAAG
AGAGTCTTGACCGGAAAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAG
GTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAA
CCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATG
Found at i:177892 original size:43 final size:43
Alignment explanation
Indices: 177845--178043 Score: 195
Period size: 43 Copynumber: 4.9 Consensus size: 43
177835 CTGACCTTTC
* *
177845 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
177888 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
177931 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
177964 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
178007 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
178044 TGACATACAA
Statistics
Matches: 124, Mismatches: 20, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.02
38 20 0.16
39 3 0.02
41 1 0.01
43 85 0.69
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 177345 -- 177844
CGCAAAGCGAAGCGTGAGGGGACAACTTTGCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTT
CAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATT
CAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATA
CAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 178044 -- 178543
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTAAAGAGAGTCTTGACCGGAAAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAA
GGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATG
CCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATC
CATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGA
GCAAAGCCCTCTTCAAAAGAGGGCTTTGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTT
TCAGTGCTCATGACGTTCCTTTCCCGCCTTTCAAAAAAACCGATC
Found at i:177901 original size:19 final size:19
Alignment explanation
Indices: 177874--177944 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
177864 TGGTCAGGTT
177874 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
177893 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
177917 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
177936 AGTCTTGAC
1 AGTCCTGAC
177945 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 177374 -- 177873
GCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCA
GGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAG
CACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 177945 -- 178444
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTAAAGAGAGTCTTGACCGGAAA
GTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCATAAAG
TCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAC
AAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTT
TCATTGAAGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACT
TCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGCCCTC
Found at i:183054 original size:54 final size:55
Alignment explanation
Indices: 182972--183095 Score: 166
Period size: 54 Copynumber: 2.3 Consensus size: 55
182962 GCATATGGAA
182972 AGTACTAATGGCATTTTGTTGTCAAGTGAGAGAC-AT-ACAATTTGTTT-TCAAGTG
1 AGTACTAATGGCATTTTGTTGTCAAGTGAG-GACAATGAC-ATTTGTTTGTCAAGTG
* *
183026 AGTACTAATGGCA-TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTTG-TTGTCAAGTGAGGAC-AATGACATTTGTTTGTCAAGTG
183082 AGTACTAATGGCAT
1 AGTACTAATGGCAT
183096 ACAATTGTCA
Statistics
Matches: 62, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
53 6 0.10
54 25 0.40
55 10 0.16
56 21 0.34
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (55 bp):
AGTACTAATGGCATTTTGTTGTCAAGTGAGGACAATGACATTTGTTTGTCAAGTG
Left flanking sequence: Indices 182472 -- 182971
GGGCGTCTATAAAGAGCATCATGCCACCCGGTACGACTGGGATGTACGGTTAGGTTGTTTGACTC
ATGTGAGGTTTTTCTGCCGGTAGCTTGCCTGAATGAGGAAGGCAAGAAGGAAGAATGTTGGTTCT
ACTGCAGTGTATTTAAGATTGCCATCTTCTGTTATCAACATGCAATCTCCGTTTTCTGCTCTCTC
TTGTTTTGTTGGTCGAGATCCTACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGATT
GCTCGTGACTTTGCGAGTGAATTGCATTAGGGCTGATTCAGATTCTTGGTATGGTCAGCACTAAT
GGCATACAATTCCAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACA
ATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTG
GTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 183096 -- 183595
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCT
TTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTG
ATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCA
Found at i:183105 original size:28 final size:28
Alignment explanation
Indices: 182972--183095 Score: 168
Period size: 28 Copynumber: 4.5 Consensus size: 28
182962 GCATATGGAA
182972 AGTACTAATGGCATTT-TGTTGTCAAGTG
1 AGTACTAATGGCATTTGT-TTGTCAAGTG
* *
183000 AG-A-GACAT-ACAATTTGTTT-TCAAGTG
1 AGTACTA-ATGGC-ATTTGTTTGTCAAGTG
183026 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
183054 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
183082 AGTACTAATGGCAT
1 AGTACTAATGGCAT
183096 ACAATTGTCA
Statistics
Matches: 85, Mismatches: 4, Indels: 14
0.83 0.04 0.14
Matches are distributed among these distances:
26 11 0.13
27 20 0.24
28 54 0.64
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 182472 -- 182971
GGGCGTCTATAAAGAGCATCATGCCACCCGGTACGACTGGGATGTACGGTTAGGTTGTTTGACTC
ATGTGAGGTTTTTCTGCCGGTAGCTTGCCTGAATGAGGAAGGCAAGAAGGAAGAATGTTGGTTCT
ACTGCAGTGTATTTAAGATTGCCATCTTCTGTTATCAACATGCAATCTCCGTTTTCTGCTCTCTC
TTGTTTTGTTGGTCGAGATCCTACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGATT
GCTCGTGACTTTGCGAGTGAATTGCATTAGGGCTGATTCAGATTCTTGGTATGGTCAGCACTAAT
GGCATACAATTCCAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACA
ATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTG
GTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 183096 -- 183595
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCT
TTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTG
ATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCA
Found at i:183213 original size:43 final size:43
Alignment explanation
Indices: 183165--183248 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
183155 CTGATCTTTC
* * *
183165 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
183208 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
183249 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 182665 -- 183164
TCTTGTTTTGTTGGTCGAGATCCTACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGA
TTGCTCGTGACTTTGCGAGTGAATTGCATTAGGGCTGATTCAGATTCTTGGTATGGTCAGCACTA
ATGGCATACAATTCCAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATA
CAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCT
TGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTG
TTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 183249 -- 183748
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTATTGACCTTTTT
GGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGA
TGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAAT
TGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
Found at i:183288 original size:16 final size:16
Alignment explanation
Indices: 183267--183297 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
183257 CATTCTCATT
183267 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
183283 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
183298 AGAAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 182767 -- 183266
ATTCAGATTCTTGGTATGGTCAGCACTAATGGCATACAATTCCAATTGATCCTTTTCATTACATA
AATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCA
CTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATG
GCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 183298 -- 183797
AGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGA
CAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGT
GAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
Found at i:183402 original size:41 final size:41
Alignment explanation
Indices: 183355--183434 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
183345 AGTCCTGATC
* * *
183355 TTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTA
1 TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACTTA
*
183396 TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACT
1 TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACT
183435 CATTGTTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (41 bp):
TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACTTA
Left flanking sequence: Indices 182855 -- 183354
GCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCAT
CTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCA
TTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTG
ACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGA
CTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATC
Right flanking sequence: Indices 183435 -- 183934
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACC
TTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCA
ATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTGAACAAGAA
Found at i:183578 original size:28 final size:28
Alignment explanation
Indices: 183449--183568 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
183439 GTTGATGGAA
183449 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
183477 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
183505 AATGGCATTT-TGTTGTCAAGTGAGTACT
1 AATGGCATTTGT-TTGTCAAGTGAGTACT
183533 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
183561 AATGGCAT
1 AATGGCAT
183569 ACAATTGTCA
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 182949 -- 183448
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATT
TGTTTTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAG
AAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTTAAGG
AAAATCAGTCCTGATCTTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGA
CAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 183569 -- 184068
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTG
TATGCCATTAGTGCTGACTCTGACAAAAAGCTGAACAAGAAGGCTTTGCTCTGACGTGACATGAC
CTTCAGCCATTCAAAGTTGCGAGTGCTTTGACTATCAGACGTGCAAAGCCCACAAAGCACTCGCA
AAGATTGCTCGTGACTTGCTTCGCTTTGCGAGGGCTTCTTCCCTC
Found at i:183686 original size:43 final size:43
Alignment explanation
Indices: 183638--183719 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
183628 CTGATCTTTC
* * *
183638 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
183681 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
183720 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 183138 -- 183637
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTT
TTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATT
TAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 183720 -- 184219
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGT
CAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCT
GACAAAAAGCTGAACAAGAAGGCTTTGCTCTGACGTGACATGACCTTCAGCCATTCAAAGTTGCG
AGTGCTTTGACTATCAGACGTGCAAAGCCCACAAAGCACTCGCAAAGATTGCTCGTGACTTGCTT
CGCTTTGCGAGGGCTTCTTCCCTCTGGACTTTTGCCTGAGGCCATGTCTCAACGAAAGCCTTTGA
CTTTGAAAGTGGAAGGCGCAGGTTCCTTTCTTTCTCTGCAAGGCCAACATCATCGGGGTGGATTG
CTAGAGCAGACGGAACTCTGGACAGAGCCTCCCTCACCTGAGTCA
Found at i:183781 original size:19 final size:16
Alignment explanation
Indices: 183740--183770 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
183730 CATTCTCATT
183740 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
183756 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
183771 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 183240 -- 183739
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCGGAAAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTATT
GACCTTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 183771 -- 184270
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATAAGG
TCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCA
TTAGTGCTGACTCTGACAAAAAGCTGAACAAGAAGGCTTTGCTCTGACGTGACATGACCTTCAGC
CATTCAAAGTTGCGAGTGCTTTGACTATCAGACGTGCAAAGCCCACAAAGCACTCGCAAAGATTG
CTCGTGACTTGCTTCGCTTTGCGAGGGCTTCTTCCCTCTGGACTTTTGCCTGAGGCCATGTCTCA
ACGAAAGCCTTTGACTTTGAAAGTGGAAGGCGCAGGTTCCTTTCTTTCTCTGCAAGGCCAACATC
ATCGGGGTGGATTGCTAGAGCAGACGGAACTCTGGACAGAGCCTCCCTCACCTGAGTCACCTTTC
TTTCTATATGGACAAAACCTATTCCAATGCTTCAAAGCTACCTTC
Found at i:186466 original size:13 final size:13
Alignment explanation
Indices: 186448--186474 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
186438 TTTTACTCAA
186448 ATGGGAGATTTTG
1 ATGGGAGATTTTG
186461 ATGGGAGATTTTG
1 ATGGGAGATTTTG
186474 A
1 A
186475 CATCGGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (13 bp):
ATGGGAGATTTTG
Left flanking sequence: Indices 185948 -- 186447
CCAAAGACAACAATACCTACATTCTCATTCTCAAGATTCAACGCTATTCCTTTCACACCGCTGGC
AAATTCCACCATTTCCCCGGCTTGAATCTCGTTCAATCCATAAACACGTGCAATCCCATCTCCAA
CGGAGACCACTCGACCGATCTCATCCACTTGAAAATTCGTGTAAAAGTCGGTCATTCTTCTTTCT
AATAGAGTAGTGAGTTCCTCAGCTCTGGGAGAGAATTCCATATTGTTTGGGATAGAGTCAAGGGC
TCAGAGAAATCCGCTATACTAACGGTGAAAATACCGGAAGTCTCAGAAGCCACATACGACCTATC
AGACTATTTGACAAAATTTCATGAACCTTGTCCACCTGCTCGCTGTCTAGAAGATCAAGTCAGTA
TCTGTCGTCTGAGAGAGGAAGGAGAAGGGCATTTGTGCTTGCTTTCGAGGTAGCTACGTTGTGCG
TGTAGCTCCTCGCGGTGTTGCCAACCGGGCCAGTTTTTTACTCAA
Right flanking sequence: Indices 186475 -- 186974
CATCGGAATAGACAGGGGAGTGATGTCCTTCTACAAGGAGGCTCATCAAAACTTGTGTGAGAGCC
TCCAACTCCAAGTTAGAGTCAATCGGTTCCAGATAGATACGAAGTCTAGTATAGAATTGAGGTCC
ATCGCATCAATGAAGAATGAAGGAAAGGAGCCTCTCGCCCGTCAAAGATTAGTTCGTATCAAAAG
CAGATCTGGTCCCGAGTCGCAAAACACAACTCGGCATGAAGGAAGTCCTGAATCAAGATCTCGTA
CTCCCTGGGTTCAAGTCTTGGATCTTCTAGTCGTTGGTTTACAAACTCTACCCATTCTGGATCTT
GATTCGGTTGTCTCTGAGAGTGTTCCAGAAGGGCAATCTCCGATGGGAGAATGCCAAAGAAGGTC
TTTGGATACTGCAACCCTTCTATGTTGCGGAAAATGAGACAGCCTGCGCGAAGAAGGAGAACAGC
AACATCCACTTCAGGCAACAAATTCTCTGCCGAAAGCGTCGACTT
Found at i:189659 original size:28 final size:28
Alignment explanation
Indices: 189616--189707 Score: 175
Period size: 28 Copynumber: 3.3 Consensus size: 28
189606 GGTATGGTGA
*
189616 AATGGCATTTGGTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
189644 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
189672 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
189700 AATGGCAT
1 AATGGCAT
189708 ACAATTGCAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (28 bp):
AATGGCATTTGTTTGTACAGTGAGTACT
Left flanking sequence: Indices 189116 -- 189615
AATGTGGGAAACCGGGATCTCTGGAACCCTATCAACAAGTTGCATTTACATAAATGCTCTCTCCC
AAGCAAGCAACCGAGCCTACGAGCGAAGTTGTAGGAGCGAGCCTACTGCGTGCTATGCAAGCTGT
AACTGTGAGCAGGATACAACGTCCATACAGTTGATGCGCTATGGTAGCTTTCGACGCGGAGGTAG
CTTTCGACGCTACGTAAACTGAGACCGTCTACTTTTTTTTCGAAGCGAGCCATCACGTCACGTCA
CGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTAAAAGAAGGGATCAAGGTTTGACGGATTG
ATGGAAAGGAAAGGTTGCAATTCTTGATAAAGGAAAGGATCAATTGCAATGAGATGCCATTTTCC
ATCAAAATGAGTGCTGACCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAA
AATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGA
Right flanking sequence: Indices 189708 -- 190207
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
Found at i:189869 original size:95 final size:98
Alignment explanation
Indices: 189691--189870 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
189681 TGTTTGTACA
* *
189691 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
189756 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
189790 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
189851 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
189871 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 189191 -- 189690
CCGAGCCTACGAGCGAAGTTGTAGGAGCGAGCCTACTGCGTGCTATGCAAGCTGTAACTGTGAGC
AGGATACAACGTCCATACAGTTGATGCGCTATGGTAGCTTTCGACGCGGAGGTAGCTTTCGACGC
TACGTAAACTGAGACCGTCTACTTTTTTTTCGAAGCGAGCCATCACGTCACGTCACGAGCAAAGC
CAAAGCTTTGCGAGTGCGTGCTTTCTAAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGA
AAGGTTGCAATTCTTGATAAAGGAAAGGATCAATTGCAATGAGATGCCATTTTCCATCAAAATGA
GTGCTGACCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCT
TTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAAATGGCATTTGGTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 189871 -- 190370
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAG
ACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
Found at i:189900 original size:43 final size:43
Alignment explanation
Indices: 189839--190051 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
189829 TTCCATCAAA
* * *
189839 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
189882 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
189925 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
189963 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
190001 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
190044 AGTACTGA
1 AGTCCTGA
190052 TGACATACAA
Statistics
Matches: 137, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
33 12 0.09
35 1 0.01
37 3 0.02
38 20 0.15
39 3 0.02
41 1 0.01
42 4 0.03
43 93 0.68
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 189339 -- 189838
CTACTTTTTTTTCGAAGCGAGCCATCACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCG
TGCTTTCTAAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAAGGTTGCAATTCTTGAT
AAAGGAAAGGATCAATTGCAATGAGATGCCATTTTCCATCAAAATGAGTGCTGACCATCAACCAA
CATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTAC
TCATGTTGGTATGGTGAAATGGCATTTGGTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 190052 -- 190551
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATAATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:189909 original size:19 final size:19
Alignment explanation
Indices: 189882--189952 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
189872 TGGTCAGGTT
189882 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
189901 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
189925 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
189944 AGTCTTGAC
1 AGTCCTGAC
189953 CAGAAGAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 4 0.10
22 5 0.12
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 189382 -- 189881
AAGCCAAAGCTTTGCGAGTGCGTGCTTTCTAAAAGAAGGGATCAAGGTTTGACGGATTGATGGAA
AGGAAAGGTTGCAATTCTTGATAAAGGAAAGGATCAATTGCAATGAGATGCCATTTTCCATCAAA
ATGAGTGCTGACCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGC
ATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAAATGGCATTTGGTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 189953 -- 190452
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
Found at i:189928 original size:24 final size:24
Alignment explanation
Indices: 189857--189933 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
189847 CCTTTCAAGA
* * *
189857 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
189881 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
189900 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
189924 CAGTCCTGAC
1 CAGTCCTGAC
189934 TGTGAAAGAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
21 4 0.10
22 5 0.13
23 3 0.08
24 17 0.44
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 189357 -- 189856
GAGCCATCACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTAAAAGAAGGG
ATCAAGGTTTGACGGATTGATGGAAAGGAAAGGTTGCAATTCTTGATAAAGGAAAGGATCAATTG
CAATGAGATGCCATTTTCCATCAAAATGAGTGCTGACCATCAACCAACATGGATTTTGGAAGGCA
TACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAA
ATGGCATTTGGTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 189934 -- 190433
TGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATAATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
Found at i:190141 original size:19 final size:19
Alignment explanation
Indices: 190098--190164 Score: 86
Period size: 19 Copynumber: 3.7 Consensus size: 19
190088 CATTCTCATT
190098 AGTCCTGACCTTT-CAG--
1 AGTCCTGACCTTTCCAGAC
*
190114 AGTCTTGACCTTTCCAGAC
1 AGTCCTGACCTTTCCAGAC
*
190133 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCCAGAC
*
190152 AGTCTTGACCTTT
1 AGTCCTGACCTTT
190165 TTGGTAAGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
16 12 0.27
17 3 0.07
19 29 0.66
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (19 bp):
AGTCCTGACCTTTCCAGAC
Left flanking sequence: Indices 189598 -- 190097
CTCATGTTGGTATGGTGAAATGGCATTTGGTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 190165 -- 190664
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCACGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Found at i:190300 original size:175 final size:168
Alignment explanation
Indices: 189977--190321 Score: 383
Period size: 175 Copynumber: 2.0 Consensus size: 168
189967 CTGATCAGAT
* * *
189977 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
* * * *
190042 TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
66 TGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTCCTC-A-CA-T-TAATCAGTCCTGAC
* *
190107 CTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAC
124 CTTTCAGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGAC
190152 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
* * *
190217 TGAGTACTAATGGCATACAATTG-CA-ATTGGTCCTGTCCTTC-CA-TAATCAGTCCTGACCTTT
66 TGAGTACTAATGACATACAAATGACATA-TGGTCAT-TCC-TCACATTAATCAGTCCTGACCTTT
*
190278 CACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
128 --C-----A-GAGTCCTGACCTTTCAAGACAGTCCTGACCTTTC
190322 CATTTTTGGT
Statistics
Matches: 146, Mismatches: 13, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
167 16 0.11
169 1 0.01
170 3 0.02
171 6 0.04
172 4 0.03
173 2 0.01
174 1 0.01
175 113 0.77
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (168 bp):
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTAATGACATACAAATGACATATGGTCATTCCTCACATTAATCAGTCCTGACCTTTCAG
AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 189477 -- 189976
GGATCAATTGCAATGAGATGCCATTTTCCATCAAAATGAGTGCTGACCATCAACCAACATGGATT
TTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTG
GTATGGTGAAATGGCATTTGGTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 190322 -- 190821
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
Found at i:190430 original size:119 final size:118
Alignment explanation
Indices: 190205--190415 Score: 315
Period size: 119 Copynumber: 1.8 Consensus size: 118
190195 AGTCTTGACC
*
190205 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
1 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAAGTCC
* *
190270 TGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
66 TGACCTTT-ACGAAGAATCAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCA
* *
190324 TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTC
1 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATAAGTC
*
190388 CTGACCTTT-C-AAG-A-CAGTCTTGACCTTT
65 CTGACCTTTACGAAGAATCAGTCCTGACCTTT
190416 TTGGTAAGGT
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
114 12 0.14
115 1 0.01
116 3 0.03
117 1 0.01
119 67 0.78
120 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (118 bp):
TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAAGTCC
TGACCTTTACGAAGAATCAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCA
Left flanking sequence: Indices 189705 -- 190204
CATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTA
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
Right flanking sequence: Indices 190416 -- 190915
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAT
Found at i:190445 original size:43 final size:42
Alignment explanation
Indices: 190384--190553 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
190374 TTCCATCAAA
**
190384 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
190427 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * * *
190465 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
190503 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
190546 AGTACTGA
1 AGTCCTGA
190554 TGACATACAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.22
39 2 0.02
41 1 0.01
42 2 0.02
43 54 0.56
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 189884 -- 190383
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 190554 -- 191053
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
Found at i:190659 original size:19 final size:19
Alignment explanation
Indices: 190631--190706 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
190621 CTTCCATAAT
190631 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
190650 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
190673 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
190693 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
190707 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 190131 -- 190630
ACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 190707 -- 191206
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCT
TTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAACAG
TCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGA
Found at i:190677 original size:24 final size:24
Alignment explanation
Indices: 190628--190692 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
190618 GTCCTTCCAT
190628 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
190649 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
190671 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
190693 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 190128 -- 190627
CAGACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 190693 -- 191192
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTCAAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
Found at i:190919 original size:19 final size:19
Alignment explanation
Indices: 190855--190919 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
190845 TCAGTACTGA
190855 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
190874 TTTCCAGAAGAATCAGTCCTGACC
1 TTT-C--AAG-A-CAGTCTTGACC
*
190898 TTTCAAGACAGTCTTGATC
1 TTTCAAGACAGTCTTGACC
190917 TTT
1 TTT
190920 TTGGTAAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
19 15 0.39
20 2 0.05
21 3 0.08
22 3 0.08
23 2 0.05
24 13 0.34
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 190355 -- 190854
ATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGT
CCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 190920 -- 191419
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGAC
ATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
Found at i:190992 original size:81 final size:80
Alignment explanation
Indices: 190804--191040 Score: 316
Period size: 81 Copynumber: 2.9 Consensus size: 80
190794 TGGTAAGGTT
* * * * *
190804 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGACAGT
1 AGTCCTGACTTT-CAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
190867 CTTGACCTTTCCAGAAGAATC
65 CTTGA-----CCAGAAGAATC
*
190888 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGA-CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
190953 CTTGACCAGAAGAATC
65 CTTGACCAGAAGAATC
* *
190969 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGA-CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
191034 CTTGACC
65 CTTGACC
191041 TTTTTGATAA
Statistics
Matches: 140, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
81 79 0.56
84 42 0.30
85 7 0.05
86 12 0.09
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (80 bp):
AGTCCTGACTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTC
TTGACCAGAAGAATC
Left flanking sequence: Indices 190304 -- 190803
AGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 191041 -- 191540
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCT
TTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGT
ACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTT
GTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTCCTG
TATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
Found at i:191046 original size:43 final size:42
Alignment explanation
Indices: 190630--191062 Score: 382
Period size: 43 Copynumber: 10.2 Consensus size: 42
190620 CCTTCCATAA
*** *
190630 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
190673 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *** *
190716 TTAGTCCTGACTTTGAAATACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
190759 TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
190802 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* *** *
190845 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
*
190886 TCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
190929 TCAGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
190967 TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** *
191010 TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGG
* *
191053 TGAGTACTGA
1 TCAGTCCTGA
191063 TGACATACAA
Statistics
Matches: 313, Mismatches: 57, Indels: 40
0.76 0.14 0.10
Matches are distributed among these distances:
37 3 0.01
38 23 0.07
39 4 0.01
40 3 0.01
41 27 0.09
42 20 0.06
43 217 0.69
44 16 0.05
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 190130 -- 190629
GACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCACGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 191063 -- 191562
TGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
CCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAA
Found at i:191216 original size:19 final size:16
Alignment explanation
Indices: 191173--191218 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
191163 CATTCTCATT
191173 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
191189 AGTCTTGACCTTTCAAG
1 AGTCCTGACCTTTC-AG
191206 ACAGTCCTGACCT
1 --AGTCCTGACCT
191219 GTTTTGGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 13 0.52
17 2 0.08
19 10 0.40
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 190673 -- 191172
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACA
GTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 191219 -- 191718
GTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTG
AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGAC
CTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTG
Found at i:191375 original size:88 final size:88
Alignment explanation
Indices: 191257--191424 Score: 311
Period size: 88 Copynumber: 1.9 Consensus size: 88
191247 TGGTTTGTAC
191257 AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
1 AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
191322 TAATGACATACAATTTGTTGTCA
66 TAATGACATACAATTTGTTGTCA
191345 AGTGAGTACTAATGGCATTT-TGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
1 AGTGAGTACTAATGGCATTTGT-TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
*
191409 CTAATGGCATACAATT
65 CTAATGACATACAATT
191425 GTCATGAGTC
Statistics
Matches: 78, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
87 1 0.01
88 77 0.99
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (88 bp):
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGACATACAATTTGTTGTCA
Left flanking sequence: Indices 190757 -- 191256
AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTC
CTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTAC
Right flanking sequence: Indices 191425 -- 191924
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGA
GTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
Found at i:191428 original size:28 final size:28
Alignment explanation
Indices: 191230--191418 Score: 267
Period size: 28 Copynumber: 6.6 Consensus size: 28
191220 TTTTGGTATG
* *
191230 GTGAGTACTAATGACATTGGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
191258 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
191286 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
*
191314 GTGAGTACTAATGACATACAATT-TGTTGTCAA
1 GTGAGTACTAATGGCAT----TTGT-TTGTCAA
191346 GTGAGTACTAATGGCATTT-TGTTGTCAA
1 GTGAGTACTAATGGCATTTGT-TTGTCAA
191374 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
191402 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
191419 ACAATTGTCA
Statistics
Matches: 150, Mismatches: 4, Indels: 14
0.89 0.02 0.08
Matches are distributed among these distances:
28 122 0.81
29 2 0.01
31 1 0.01
32 25 0.17
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 190730 -- 191229
GAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 191419 -- 191918
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTC
AAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
Found at i:191476 original size:20 final size:19
Alignment explanation
Indices: 191430--191495 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
191420 CAATTGTCAT
191430 GAGTCCTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
* * * *
191449 GGGTCCTGTCCTTCCATAAT
1 GAGTCCTGACCTTTCA-AAA
191469 GAGTCCTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
191488 GAGTCCTG
1 GAGTCCTG
191496 TATGGAATCT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 23 0.61
20 15 0.39
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (19 bp):
GAGTCCTGACCTTTCAAAA
Left flanking sequence: Indices 190930 -- 191429
CAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGT
ACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCAT
Right flanking sequence: Indices 191496 -- 191995
TATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
AAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
Found at i:191551 original size:16 final size:16
Alignment explanation
Indices: 191530--191560 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
191520 CATTCTCATT
191530 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
191546 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
191561 AAAGAGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 191030 -- 191529
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAAC
AGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTG
GTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 191561 -- 192060
AAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
Found at i:191568 original size:19 final size:19
Alignment explanation
Indices: 191530--191621 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 19
191520 CATTCTCATT
191530 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
191546 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
* *
191565 AGTCTTCACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
191589 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
191608 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
191622 CATTTTTGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 14 0.23
19 27 0.44
20 1 0.02
21 2 0.03
22 2 0.03
23 2 0.03
24 13 0.21
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 191030 -- 191529
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAAC
AGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTG
GTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 191622 -- 192121
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
Found at i:191599 original size:24 final size:22
Alignment explanation
Indices: 191544--191606 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
191534 CTGACCTTTC
191544 AGAGTCCTGACCTTTC---AAA
1 AGAGTCCTGACCTTTCAAGAAA
* *
191563 AGAGTCTTCACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAA-A
191586 ATGAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
191607 CAGTCTTGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 14 0.40
22 2 0.06
23 2 0.06
24 17 0.49
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (22 bp):
AGAGTCCTGACCTTTCAAGAAA
Left flanking sequence: Indices 191044 -- 191543
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAACAGTCTTCATCTTTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACT
AATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGT
CCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTCCTGTAT
GGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 191607 -- 192106
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
Found at i:191748 original size:43 final size:42
Alignment explanation
Indices: 191701--191853 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
191691 ACCTTTCAAG
191701 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
191744 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
191779 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
191820 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
191854 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 191201 -- 191700
TCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGACAT
ACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TCCATAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 191854 -- 192353
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
Found at i:191959 original size:19 final size:19
Alignment explanation
Indices: 191931--192001 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
191921 CTTCCATAAT
191931 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
191950 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
191968 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
191988 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
192002 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 191431 -- 191930
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTCCTG
TATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
AAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 192002 -- 192501
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATAAGG
AGTCCTGACCTTTCAATAATTGCAATTAGATGCCATTAATGCTGA
Found at i:191979 original size:38 final size:38
Alignment explanation
Indices: 191928--192058 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
191918 GTCCTTCCAT
191928 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
191966 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
192010 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
192047 AATCAGTCCTGA
1 AATCAGTCCTGA
192059 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 191428 -- 191927
ATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTC
CTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTT
TCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 192059 -- 192558
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTT
CCATAAGGAGTCCTGACCTTTCAATAATTGCAATTAGATGCCATTAATGCTGACCATACAACAAA
TTGTATGCCATTAGTGTCCATAATTGTCATTGTATGCCATTAGTG
Found at i:192034 original size:43 final size:42
Alignment explanation
Indices: 191968--192161 Score: 158
Period size: 43 Copynumber: 4.8 Consensus size: 42
191958 ACCAGAAGAA
**
191968 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
192011 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
192049 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
192087 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
192130 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
192162 CCATTTTTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.03
38 21 0.18
39 3 0.03
41 21 0.18
43 59 0.50
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 191468 -- 191967
TGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 192162 -- 192661
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCC
TGACCTTTCCAGAGAGTCCTGACCTTTCCATAAGGAGTCCTGACCTTTCAATAATTGCAATTAGA
TGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTGTCCATAATTGTCATTGTATGCC
ATTAGTGCTGACCATACCAAGAATCAGCCAAAGCGAAGCGAGTGTGCTTTGCACTAATGCCATTC
AAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTGATCAAAGG
Found at i:192110 original size:76 final size:78
Alignment explanation
Indices: 191930--192117 Score: 265
Period size: 76 Copynumber: 2.4 Consensus size: 78
191920 CCTTCCATAA
*
191930 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCT
191994 TGACCTTTTTGGTAAGG
62 TGACCTTTTTGGTAAGG
* * * *
192011 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
192074 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
192087 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACC
192118 TTTTTGATAA
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
80 3 0.03
81 41 0.42
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 191430 -- 191929
GAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAAAGAGTCCT
GTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTC
AAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 192118 -- 192617
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTG
ACCTTTCCATAAGGAGTCCTGACCTTTCAATAATTGCAATTAGATGCCATTAATGCTGACCATAC
AACAAATTGTATGCCATTAGTGTCCATAATTGTCATTGTATGCCATTAGTGCTGACCATACCAAG
AATCAGCCAAAGCGAAGCGAGTGTGCTTTGCACTAATGCCATTCA
Found at i:192289 original size:43 final size:42
Alignment explanation
Indices: 192242--192394 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
192232 ACCTTTCAAG
192242 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
192285 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
192320 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
192361 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
192395 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 191742 -- 192241
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 192395 -- 192894
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATAAGGAGT
CCTGACCTTTCAATAATTGCAATTAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCAT
TAGTGTCCATAATTGTCATTGTATGCCATTAGTGCTGACCATACCAAGAATCAGCCAAAGCGAAG
CGAGTGTGCTTTGCACTAATGCCATTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTGA
TCAAAGGCTCGCGAGCTCGACCAACGATCTCCCAATGGAAGGCACAAATGGAGGGAGCGTTGGAG
ATCCACTTTGGAGGTAAACGCGCCGAAGGAAGATACCACCACCCGCGGGGCATTTGTTCTTTCAC
TTATGGGATCAGCATTCATCTATATTGGTAAACAACGGACTCGGAAAGGGCCCCGAGGAAAAGGG
CATTAAGCTTAACTTCGACCCACGTCAAACGCCATCCGGGGCGAG
Found at i:192443 original size:19 final size:21
Alignment explanation
Indices: 192419--192475 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
192409 GTCTTGACCT
*
192419 TCCTGACCTTTCCA-GA-GAG
1 TCCTGACCTTTCCATAAGGAG
192438 TCCTGACCTTTCCATAAGGAG
1 TCCTGACCTTTCCATAAGGAG
*
192459 TCCTGACCTTTCAATAA
1 TCCTGACCTTTCCATAA
192476 TTGCAATTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 14 0.41
20 1 0.03
21 19 0.56
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (21 bp):
TCCTGACCTTTCCATAAGGAG
Left flanking sequence: Indices 191919 -- 192418
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
Right flanking sequence: Indices 192476 -- 192975
TTGCAATTAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTGTCCATAATTGT
CATTGTATGCCATTAGTGCTGACCATACCAAGAATCAGCCAAAGCGAAGCGAGTGTGCTTTGCAC
TAATGCCATTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTGATCAAAGGCTCGCGAGC
TCGACCAACGATCTCCCAATGGAAGGCACAAATGGAGGGAGCGTTGGAGATCCACTTTGGAGGTA
AACGCGCCGAAGGAAGATACCACCACCCGCGGGGCATTTGTTCTTTCACTTATGGGATCAGCATT
CATCTATATTGGTAAACAACGGACTCGGAAAGGGCCCCGAGGAAAAGGGCATTAAGCTTAACTTC
GACCCACGTCAAACGCCATCCGGGGCGAGCAACTTACTGGATGTAGCGGAACTTCTGCCAGAGTC
CCACTTCACTTTCCGGGCGAGTCTATCCATTTACGTAGTAGCAAA
Found at i:193633 original size:28 final size:28
Alignment explanation
Indices: 193592--193674 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
193582 TGAGTACTCA
* *
193592 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
193620 TGTTTGT-CAAGTGAGTACTAATGGCATT
1 TGTTTGTAC-AGTGAGTACTAATGGCATT
193648 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
193675 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 50 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.10, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 193092 -- 193591
TTAGTGAAACCCTTCTTTTTGCTTTTTTTTCCATCCATTAAGGAGATGGCCCCTCCGAAGTCGAC
CAACAGAAAGAGAGGAGCTTCTTTCTTATTGATTGAAAGGCCCTGAATTTCCTGTTTCCTTTTGG
GAAGGGAAGCAAACCTTGGATCTTTCTTATTGATAGGGGATTTCTCCTTTTGGAAGGAGTTGGAA
GCCTGTGTATTTATCCATTACGAAACCGTTTCTTTTCCATTTATATACGTGAAAACTAGTTGCCC
CAACGTCACTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTCACGAGCAAA
GCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTATAGG
CAGAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATT
GGGAGCACTAATGGCATTGTTTTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 193675 -- 194174
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGT
CTTGACCTTTCAATCAAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
Found at i:193836 original size:95 final size:98
Alignment explanation
Indices: 193658--193837 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
193648 TGTTTGTACA
* *
193658 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
193723 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
193757 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
193818 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
193838 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 193158 -- 193657
AACAGAAAGAGAGGAGCTTCTTTCTTATTGATTGAAAGGCCCTGAATTTCCTGTTTCCTTTTGGG
AAGGGAAGCAAACCTTGGATCTTTCTTATTGATAGGGGATTTCTCCTTTTGGAAGGAGTTGGAAG
CCTGTGTATTTATCCATTACGAAACCGTTTCTTTTCCATTTATATACGTGAAAACTAGTTGCCCC
AACGTCACTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTCACGAGCAAAG
CCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTATAGGC
AGAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTG
GGAGCACTAATGGCATTGTTTTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 193838 -- 194337
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCCAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
Found at i:193867 original size:43 final size:43
Alignment explanation
Indices: 193806--194018 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
193796 TTCCATCAAA
* * *
193806 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
193849 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
193892 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
193930 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
193968 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
194011 AGTACTGA
1 AGTCCTGA
194019 TGACATACAA
Statistics
Matches: 136, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 3 0.02
38 20 0.15
39 3 0.02
41 1 0.01
42 4 0.03
43 93 0.68
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 193306 -- 193805
ACGAAACCGTTTCTTTTCCATTTATATACGTGAAAACTAGTTGCCCCAACGTCACTTTGACGTCA
TGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTG
CGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTATAGGCAGAGCCAAAGCGAAGCGA
GTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTG
TTTTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 194019 -- 194518
TGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGT
CCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTC
Found at i:193876 original size:19 final size:19
Alignment explanation
Indices: 193849--193919 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
193839 TGGTCAGGTT
193849 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
193868 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
193892 AGTCCTGACTTTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
193911 AGTCTTGAC
1 AGTCCTGAC
193920 CAGAAGAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 16 0.39
20 3 0.07
21 5 0.12
22 5 0.12
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 193349 -- 193848
CCCCAACGTCACTTTGACGTCATGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTCACGAGC
AAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTAT
AGGCAGAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCC
ATTGGGAGCACTAATGGCATTGTTTTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 193920 -- 194419
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGAC
TTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:193895 original size:24 final size:24
Alignment explanation
Indices: 193824--193900 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
193814 CCTTTCAAGA
* * *
193824 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
193848 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
193867 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
193891 CAGTCCTGAC
1 CAGTCCTGAC
193901 TTTGAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
21 4 0.10
22 5 0.13
23 3 0.08
24 17 0.44
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 193324 -- 193823
CATTTATATACGTGAAAACTAGTTGCCCCAACGTCACTTTGACGTCATGAGCACTGAAAAGCGAG
TGCTTTGTGCAATCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTGA
AAGGTCAAGGTCAGTGCACAACTATAGGCAGAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTG
GAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGTTTTGGTATGGTG
AGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 193901 -- 194400
TTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCC
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
Found at i:194107 original size:43 final size:43
Alignment explanation
Indices: 194058--194179 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
194048 ACTTTTCTAT
*
194058 AATGAGTCTTGACCTTTCAATCA-AGTCCTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAA-CACAGTCCTGACCTTTCCAGAAG
* *
194101 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAACACAGTCCTGACCTTTCCAGAAG
* * * *
194144 AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
1 AATGAGTCCTGACCTTTCAACACAGTCCTGACCTTT
194180 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 1 0.01
43 72 0.99
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAACACAGTCCTGACCTTTCCAGAAG
Left flanking sequence: Indices 193558 -- 194057
TGGCATTGTTTTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGA
GTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTAT
Right flanking sequence: Indices 194180 -- 194679
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAT
ACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
Found at i:194113 original size:24 final size:24
Alignment explanation
Indices: 194076--194161 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 24
194066 TTGACCTTTC
194076 AATCAAGTCCTGACCTTTCCAGAAG
1 AATC-AGTCCTGACCTTTCCAGAAG
*
194101 AATGAGTCCTGACCTTT-C--AAG
1 AATCAGTCCTGACCTTTCCAGAAG
*
194122 -A-CAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCCAGAAG
194144 AATCAGTCCTGACCTTTC
1 AATCAGTCCTGACCTTTC
194162 AAGACAGTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 12 0.23
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 27 0.52
25 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCCAGAAG
Left flanking sequence: Indices 193576 -- 194075
GTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAC
TTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTC
Right flanking sequence: Indices 194162 -- 194661
AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
Found at i:194179 original size:19 final size:19
Alignment explanation
Indices: 194105--194179 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
194095 CAGAAGAATG
*
194105 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
194124 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAG-A-C
*
194148 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
194167 AGTCTTGATCTTT
1 AGTCTTGACCTTT
194180 TTGGTAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 24 0.51
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.28
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 193605 -- 194104
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAA
TGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 194180 -- 194679
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAT
ACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
Found at i:194193 original size:43 final size:42
Alignment explanation
Indices: 194105--194317 Score: 142
Period size: 43 Copynumber: 5.2 Consensus size: 42
194095 CAGAAGAATG
*** *
194105 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
194148 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
194191 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* *
194229 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
194267 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
194310 AGTACTGA
1 AGTCCTGA
194318 TGACATACAA
Statistics
Matches: 131, Mismatches: 25, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 11 0.08
37 3 0.02
38 22 0.17
39 3 0.02
42 2 0.02
43 87 0.66
44 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 193605 -- 194104
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAA
TGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 194318 -- 194817
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
Found at i:194268 original size:76 final size:78
Alignment explanation
Indices: 194137--194295 Score: 259
Period size: 76 Copynumber: 2.0 Consensus size: 78
194127 CTTGACCTTT
194137 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
*
194202 TGAAATACAGTCTTGA
63 TGAAAGACAGTCTTGA
*
194218 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
194281 AAGACAGTCTTGA
66 AAGACAGTCTTGA
194294 CC
1 CC
194296 TTTTTGATAA
Statistics
Matches: 76, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
76 55 0.72
77 2 0.03
81 19 0.25
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 193637 -- 194136
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGACCT
TTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 194296 -- 194795
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
Found at i:194423 original size:19 final size:19
Alignment explanation
Indices: 194395--194465 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
194385 CTTCCATAAT
194395 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
194414 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
194432 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
194452 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
194466 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 193895 -- 194394
CCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGAC
CTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 194466 -- 194965
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGA
Found at i:194443 original size:38 final size:38
Alignment explanation
Indices: 194392--194522 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
194382 GTCCTTCCAT
194392 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
194430 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
194474 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
194511 AATCAGTCCTGA
1 AATCAGTCCTGA
194523 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 193892 -- 194391
AGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCT
GACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 194523 -- 195022
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
Found at i:194498 original size:43 final size:42
Alignment explanation
Indices: 194432--194625 Score: 140
Period size: 43 Copynumber: 4.8 Consensus size: 42
194422 ACCAGAAGAA
** *
194432 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAATACAGTCTTGACCTTTTTGGTAAGG
* *
194475 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAATACAGTCTTGACCTTTTTGGTAAG-G
* * *
194513 TCAGTCCTGA--TCAGAT--AGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAATACAGTCTTGACCTTTTTGGTAAGG
* * *
194551 TTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAATACAGTCTTGACCTTTTTGGTAAGG
* ** *
194594 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAATACAGTCTTGACCTTT
194626 CCATTTTTGG
Statistics
Matches: 117, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
33 9 0.08
35 4 0.03
37 3 0.03
38 21 0.18
39 3 0.03
41 22 0.19
43 55 0.47
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAATACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 193932 -- 194431
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATG
AGTCTTGACCTTTCAATCAAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 194626 -- 195125
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
CAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:194501 original size:81 final size:76
Alignment explanation
Indices: 194394--194581 Score: 259
Period size: 76 Copynumber: 2.4 Consensus size: 76
194384 CCTTCCATAA
** *
194394 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA----TC-AGACAGTCTT
194459 GACCTTTTTGGTAAGG
61 GACCTTTTTGGTAAGG
* *
194475 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
194540 TTTTGGTAAGG
66 TTTTGGTAAGG
* * *
194551 TTAGTCCTGACTTTGAAATACAGTATTGACC
1 TCAGTCCTGACCTTGAAATACAGTCTTGACC
194582 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
81 45 0.45
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (76 bp):
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
TTTTGGTAAGG
Left flanking sequence: Indices 193894 -- 194393
TCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTCCTGACTTTTCTATAATGAGTCTTGACCTTTCAATCAAGTCCTGA
CCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 194582 -- 195081
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:194753 original size:43 final size:42
Alignment explanation
Indices: 194706--194858 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
194696 ACCTTTCAAG
194706 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
194749 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
194784 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
194825 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
194859 TGACATACAA
Statistics
Matches: 84, Mismatches: 14, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 22 0.26
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 194206 -- 194705
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 194859 -- 195358
TGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
Found at i:194923 original size:24 final size:24
Alignment explanation
Indices: 194890--194975 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 24
194880 CCTTTCCAGA
194890 CAGTCCTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAAGAAT
*
194914 GAGTCCTGACCTTTC---AAG-A-
1 CAGTCCTGACCTTTCAAGAAGAAT
* *
194933 CAGTCTTGACCTTTCCAGAAGAAT
1 CAGTCCTGACCTTTCAAGAAGAAT
194957 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
194976 CAGTCTTGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (24 bp):
CAGTCCTGACCTTTCAAGAAGAAT
Left flanking sequence: Indices 194390 -- 194889
ATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTT
TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGA
Right flanking sequence: Indices 194976 -- 195475
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:194924 original size:43 final size:43
Alignment explanation
Indices: 194868--194989 Score: 190
Period size: 43 Copynumber: 2.8 Consensus size: 43
194858 ATGACATACA
* * *
194868 AATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
194911 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
194954 AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
194990 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 194368 -- 194867
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 194990 -- 195489
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:194989 original size:19 final size:19
Alignment explanation
Indices: 194872--194989 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
194862 CATACAAATG
*
194872 AGTCTTGACCTTTCCAGAC
1 AGTCTTGACCTTTCAAGAC
* *
194891 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCTTGACCTTTC---AAG-A-C
*
194915 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
194934 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAG-A-C
*
194958 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
194977 AGTCTTGATCTTT
1 AGTCTTGACCTTT
194990 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 20
0.74 0.07 0.18
Matches are distributed among these distances:
19 37 0.46
20 3 0.04
21 6 0.07
22 5 0.06
23 3 0.04
24 27 0.33
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 194372 -- 194871
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 194990 -- 195489
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:195003 original size:43 final size:42
Alignment explanation
Indices: 194915--195127 Score: 142
Period size: 43 Copynumber: 5.2 Consensus size: 42
194905 AAGAAGAATG
*** *
194915 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
194958 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
195001 AGTCCTGACTGTGAAAGACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
195039 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
195077 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
195120 AGTACTGA
1 AGTCCTGA
195128 TGACATACAA
Statistics
Matches: 131, Mismatches: 25, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 11 0.08
37 3 0.02
38 21 0.16
39 3 0.02
41 1 0.01
42 2 0.02
43 87 0.66
44 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 194415 -- 194914
AGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 195128 -- 195627
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
Found at i:195081 original size:76 final size:78
Alignment explanation
Indices: 194947--195105 Score: 241
Period size: 76 Copynumber: 2.0 Consensus size: 78
194937 CTTGACCTTT
194947 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
195012 TGAAAGACAGTATTGA
63 TGAAAGACAGTATTGA
* * *
195028 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
195091 AAGACAGTCTTGA
66 AAGACAGTATTGA
195104 CC
1 CC
195106 TTTTTGATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 53 0.72
77 2 0.03
81 19 0.26
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTATTGA
Left flanking sequence: Indices 194447 -- 194946
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTAT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 195106 -- 195605
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
Found at i:195251 original size:24 final size:19
Alignment explanation
Indices: 195205--195280 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
195195 CTTCCATAAT
195205 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
195224 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
195247 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
195267 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
195281 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 194705 -- 195204
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 195281 -- 195780
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCT
Found at i:195372 original size:76 final size:78
Alignment explanation
Indices: 195204--195396 Score: 237
Period size: 76 Copynumber: 2.4 Consensus size: 78
195194 CCTTCCATAA
**
195204 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACA
195269 GTCTTGACCTTTTTGGTAAGG
58 GTCTTGACCTTTTTGGTAAGG
* * *
195290 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
195353 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
* *
195366 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACC
195397 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
81 19 0.19
86 26 0.26
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 194704 -- 195203
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 195397 -- 195896
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Found at i:195443 original size:19 final size:19
Alignment explanation
Indices: 195419--195483 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
195409 TCAGTACTGA
195419 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
195438 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
195462 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
195481 TTT
1 TTT
195484 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 194919 -- 195418
CTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 195484 -- 195983
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
Found at i:195457 original size:203 final size:203
Alignment explanation
Indices: 195216--195622 Score: 762
Period size: 203 Copynumber: 2.0 Consensus size: 203
195206 AGTCCTGACC
* *
195216 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
195281 TTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
66 TTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
195345 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
130 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
195410 CAGTACTGA
195 CAGTACTGA
195419 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
195484 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
*
195549 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
195614 AGTACTGA
196 AGTACTGA
195622 T
1 T
195623 GACATACAAA
Statistics
Matches: 199, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
202 2 0.01
203 197 0.99
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 194716 -- 195215
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
Right flanking sequence: Indices 195623 -- 196122
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGAT
TTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTT
Found at i:195497 original size:43 final size:42
Alignment explanation
Indices: 195204--195621 Score: 268
Period size: 43 Copynumber: 10.2 Consensus size: 42
195194 CCTTCCATAA
* *** *
195204 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
*
195247 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
195290 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
195328 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
195366 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* * *** * **
195409 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAA
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
*
195450 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
195493 TCAGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
195531 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
195569 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
195612 TGAGTACTGA
1 TCAGTCCTGA
195622 TGACATACAA
Statistics
Matches: 288, Mismatches: 59, Indels: 56
0.71 0.15 0.14
Matches are distributed among these distances:
33 21 0.07
37 6 0.02
38 42 0.15
39 6 0.02
41 31 0.11
42 5 0.02
43 174 0.60
44 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 194704 -- 195203
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 195622 -- 196121
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTT
Found at i:195692 original size:16 final size:16
Alignment explanation
Indices: 195667--195698 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
195657 TCATTCTCAT
195667 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
195683 TAGTCTTGACCTTTCA
1 TAGTCCTGACCTTTCA
195699 AGAAGAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.41
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 195167 -- 195666
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
TGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 195699 -- 196198
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
Found at i:195735 original size:19 final size:22
Alignment explanation
Indices: 195684--195739 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 22
195674 GACCTTTCAT
195684 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC-A-AAGAATC
*
195708 AGTCCTGACCTTTC-AAG-A-C
1 AGTCTTGACCTTTCAAAGAATC
195727 AGTCTTGACCTTT
1 AGTCTTGACCTTT
195740 TTGGTAAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 13 0.43
20 1 0.03
21 3 0.10
24 13 0.43
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (22 bp):
AGTCTTGACCTTTCAAAGAATC
Left flanking sequence: Indices 195184 -- 195683
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAA
GAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 195740 -- 196239
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTC
CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
Found at i:195872 original size:24 final size:24
Alignment explanation
Indices: 195836--195924 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
195826 GTCCTTCCAT
195836 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
195860 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
195881 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
195903 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
195925 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 195336 -- 195835
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 195925 -- 196424
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGT
CCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
Found at i:195881 original size:180 final size:168
Alignment explanation
Indices: 195524--195854 Score: 382
Period size: 180 Copynumber: 1.9 Consensus size: 168
195514 AGTATTGACC
* * * *
195524 AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
1 AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
* *
195589 CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
66 CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTCCT
* * *
195654 CAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCA
128 C-A-CA-T-TAATCAGTCCTGACCTTTCATAGTCCTGACCTTTCA
195699 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
* * * *
195764 AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG-CA-ATTGGTCCTG
61 AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATA-TGGTCAT-
195827 TCCTTC-CA-TAATCAGTCCTGACCTTTCA
124 TCC-TCACATTAATCAGTCCTGACCTTTCA
195855 AGAAGAATGA
Statistics
Matches: 136, Mismatches: 12, Indels: 19
0.81 0.07 0.11
Matches are distributed among these distances:
172 18 0.13
175 20 0.15
176 6 0.04
177 4 0.03
178 2 0.01
179 2 0.01
180 84 0.62
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (168 bp):
AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATATGGTCATTCCTCAC
ATTAATCAGTCCTGACCTTTCATAGTCCTGACCTTTCA
Left flanking sequence: Indices 195024 -- 195523
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
Right flanking sequence: Indices 195855 -- 196354
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAG
ACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGAC
Found at i:195891 original size:19 final size:19
Alignment explanation
Indices: 195864--195938 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
195854 AAGAAGAATG
195864 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
195883 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
195907 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
195926 AGTCTTGACCTTT
1 AGTCCTGACCTTT
195939 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 195364 -- 195863
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 195939 -- 196438
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
Found at i:196030 original size:76 final size:78
Alignment explanation
Indices: 195864--196054 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
195854 AAGAAGAATG
**
195864 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
195929 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
195950 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
196013 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
196026 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
196055 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 195364 -- 195863
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 196055 -- 196554
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGT
CCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:196101 original size:19 final size:19
Alignment explanation
Indices: 196077--196141 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
196067 TCAGTACTGA
196077 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
196096 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
196120 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
196139 TTT
1 TTT
196142 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 195577 -- 196076
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAG
TCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 196142 -- 196641
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
Found at i:196155 original size:43 final size:42
Alignment explanation
Indices: 195864--196279 Score: 273
Period size: 43 Copynumber: 10.2 Consensus size: 42
195854 AAGAAGAATG
* *** *
195864 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
195907 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
195950 AGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
195988 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
196026 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *** * **
196069 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
196110 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
196153 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
196191 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
196229 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
196272 AGTACTGA
1 AGTCCTGA
196280 TGACATACAA
Statistics
Matches: 288, Mismatches: 57, Indels: 56
0.72 0.14 0.14
Matches are distributed among these distances:
33 22 0.08
37 6 0.02
38 42 0.15
39 6 0.02
41 31 0.11
42 5 0.02
43 173 0.60
44 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 195364 -- 195863
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 196280 -- 196779
TGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAA
Found at i:196223 original size:203 final size:203
Alignment explanation
Indices: 195874--196914 Score: 848
Period size: 203 Copynumber: 5.1 Consensus size: 203
195864 AGTCCTGACC
195874 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
195939 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
196004 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
196069 AGTACTGA
196 AGTACTGA
*
196077 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
196142 TTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
66 TTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
196206 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
130 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
*
196271 GAGTACTGA
195 CAGTACTGA
* * * *
196280 TGACATACAA-ATGAGTCTTGACCTTTC---CAG-A-CAGTCCTGACCTTTCCAGAAGAATGAGT
1 T----TTCAAGA-CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT-C--AAG-A-CAGT
* * * * * * * ** ** * * **
196339 CCTGACC--TTT--CAA-GACAGTCTTGACCTT----TCCATTTTTGGTCAGGTGAGT-ACTAAT
56 CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
* * *** * *
196394 GGCATACA-ATTG-CAATTGGTCCTGTCCTTCCATCAA---AAGTCCTGACCTTT-CAAGACAGT
121 -G-AT-CAGATAGTC--TTGAT-CT-T--TTTGGT-AAGGTTAGTCCTGA-CTTTGAAAGACAGT
* * *
196453 CTTGATCTTTTTGGTAAGGTCAGTCCTGA
175 CTTGACCTTTTTGATAAGGTCAGTACTGA
** * * *
196482 CTGTGAAATACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA----TC-AGATAGTCTTGATCT
1 -T-TTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
* * * * * *
196537 TTTTGGTAAGGTTAGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATA-AGGTGAGTACTG
64 TTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACC----AGA-AGA-ATCAGTCCTG
* * **** * * * * * ** * * *
196600 ATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACT-A--ATGGCATACAATTGCAATTGGT
122 ATCAGATAGTCTTGA-TCTT-TTTGGTAAGGTTAGTCCTGACTTTGAAAGAC-AGT-C--TT-GA
** *
196662 CCTGTCCTTCCATAA--TCAGTCCTGA
180 CCT-T--TTTGATAAGGTCAGTACTGA
*
196687 CCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
1 --TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
196752 TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
64 TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
*
196817 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
129 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
196882 TCAGTACTGA
194 TCAGTACTGA
196892 TTTCAAGACAGTCTTGACCTTTC
1 TTTCAAGACAGTCTTGACCTTTC
196915 CATTTTTGGT
Statistics
Matches: 649, Mismatches: 110, Indels: 158
0.71 0.12 0.17
Matches are distributed among these distances:
190 8 0.01
191 1 0.00
192 5 0.01
194 4 0.01
195 10 0.02
196 2 0.00
197 3 0.00
198 18 0.03
199 18 0.03
200 30 0.05
201 6 0.01
202 78 0.12
203 248 0.38
204 10 0.02
205 46 0.07
206 9 0.01
207 34 0.05
208 14 0.02
209 7 0.01
210 36 0.06
211 8 0.01
214 2 0.00
215 50 0.08
216 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 195374 -- 195873
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCT
TTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 196915 -- 197414
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
Found at i:196320 original size:19 final size:19
Alignment explanation
Indices: 196293--196370 Score: 75
Period size: 19 Copynumber: 3.8 Consensus size: 19
196283 CATACAAATG
*
196293 AGTCTTGACCTTTCCAGAC
1 AGTCCTGACCTTTCCAGAC
*
196312 AGTCCTGACCTTTCCAGAAGAATG
1 AGTCCTGACCTTTCC---AG-A-C
*
196336 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCCAGAC
*
196355 AGTCTTGACCTTTCCA
1 AGTCCTGACCTTTCCA
196371 TTTTTGGTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
19 28 0.58
20 1 0.02
21 2 0.04
22 2 0.04
23 1 0.02
24 14 0.29
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCCAGAC
Left flanking sequence: Indices 195793 -- 196292
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 196371 -- 196870
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
Found at i:196345 original size:43 final size:43
Alignment explanation
Indices: 196289--196370 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
196279 ATGACATACA
* *
196289 AATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCAGAAG
*
196332 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
1 AATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCA
196371 TTTTTGGTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCAGAAG
Left flanking sequence: Indices 195789 -- 196288
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 196371 -- 196870
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
Found at i:196495 original size:43 final size:43
Alignment explanation
Indices: 196448--196600 Score: 121
Period size: 43 Copynumber: 3.8 Consensus size: 43
196438 ACCTTTCAAG
196448 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
** * * *
196491 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* *
196526 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
196567 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
196601 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 195948 -- 196447
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGAT
TTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 196601 -- 197100
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:196724 original size:24 final size:19
Alignment explanation
Indices: 196678--196753 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
196668 CTTCCATAAT
196678 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
196697 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
196720 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
196740 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
196754 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 196178 -- 196677
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCC
AGACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 196754 -- 197253
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
Done.