Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 5 of 20
Found at i:129388 original size:19 final size:19
Alignment explanation
Indices: 129360--129430 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
129350 CTTCCATAAT
129360 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
129379 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
129397 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
129417 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
129431 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 128860 -- 129359
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 129431 -- 129930
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTC
Found at i:129408 original size:38 final size:38
Alignment explanation
Indices: 129357--129487 Score: 165
Period size: 38 Copynumber: 3.3 Consensus size: 38
129347 GTCCTTCCAT
129357 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
129395 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* **
129439 -GTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
129476 AATCAGTCCTGA
1 AATCAGTCCTGA
129488 TCAGATAGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.55
43 30 0.38
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 128857 -- 129356
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTC
CATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 129488 -- 129987
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAA
TCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGC
Found at i:129460 original size:43 final size:42
Alignment explanation
Indices: 129397--129590 Score: 167
Period size: 43 Copynumber: 4.8 Consensus size: 42
129387 ACCAGAAGAA
**
129397 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
129440 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
129478 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
129516 TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
129559 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
129591 CCATTTTTGG
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 21 0.17
39 3 0.02
41 20 0.17
42 1 0.01
43 60 0.50
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 128897 -- 129396
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTG
ACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 129591 -- 130090
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGG
Found at i:129469 original size:19 final size:19
Alignment explanation
Indices: 129360--129470 Score: 55
Period size: 19 Copynumber: 5.6 Consensus size: 19
129350 CTTCCATAAT
**
129360 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTGAAAGA
* *
129379 CAGTCTTGACC-AG-AAGAA
1 CAGTCCTGACCTTGAAAG-A
**
129397 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTGAAAGA
* * *
129417 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACC---TT-G-AAAGA
129441 CAGTCCTGACCTTGAAAGA
1 CAGTCCTGACCTTGAAAGA
*
129460 CAGTCTTGACC
1 CAGTCCTGACC
129471 AGAAGAATCA
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 43 0.63
20 2 0.03
21 5 0.07
22 2 0.03
24 12 0.18
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTGAAAGA
Left flanking sequence: Indices 128860 -- 129359
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 129471 -- 129970
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACT
GATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAA
Found at i:129534 original size:76 final size:78
Alignment explanation
Indices: 129359--129546 Score: 274
Period size: 76 Copynumber: 2.4 Consensus size: 78
129349 CCTTCCATAA
**
129359 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTT
129424 GACCTTTTTGGTAAGG
63 GACCTTTTTGGTAAGG
* *
129440 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
129503 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
129516 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCT-TGAAAGACAGTCTTGACC
129547 TTTTTGATAA
Statistics
Matches: 101, Mismatches: 5, Indels: 7
0.89 0.04 0.06
Matches are distributed among these distances:
75 2 0.02
76 51 0.50
77 2 0.02
81 46 0.46
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 128859 -- 129358
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCA
TAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 129547 -- 130046
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCA
GACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAA
GGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAA
Found at i:129715 original size:43 final size:42
Alignment explanation
Indices: 129654--129823 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
129644 TTCCATCAAA
**
129654 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
129697 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
129735 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
129773 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
129816 AGTACTGA
1 AGTCCTGA
129824 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 129154 -- 129653
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 129824 -- 130323
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGT
ACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGT
ATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
GTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCC
TTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTC
Found at i:129913 original size:19 final size:16
Alignment explanation
Indices: 129870--129914 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
129860 CATTCTCATT
129870 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
129886 AGTCTTGACCTTTCAAG
1 AGTCCTGACCTTTC-AG
129903 ACAGTCCTGACC
1 --AGTCCTGACC
129915 GGAAGGTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 13 0.54
17 2 0.08
19 9 0.38
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 129370 -- 129869
CTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 129915 -- 130414
GGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCC
ATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGA
AAGGAAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAGTGAGGAAAAGTCAGAACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
Found at i:130128 original size:16 final size:16
Alignment explanation
Indices: 130107--130137 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
130097 AGGACCCTTT
130107 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
130123 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
130138 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 129607 -- 130106
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCA
GGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATAT
GGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 130138 -- 130637
AATGAGAATGAGTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCA
GGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
Found at i:130204 original size:43 final size:42
Alignment explanation
Indices: 130156--130253 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
130146 TGAGTGAGGA
* * * *
130156 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
130199 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
130241 AAAGATCAGAACT
1 AAAG-TCAGAACT
130254 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 129656 -- 130155
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAGTGAGGA
Right flanking sequence: Indices 130254 -- 130753
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACT
GTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:130332 original size:28 final size:28
Alignment explanation
Indices: 130309--130428 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
130299 TGACAATTGT
130309 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
130337 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
130365 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
130393 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
130421 ATGCCATT
1 ATGCCATT
130429 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 129809 -- 130308
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGA
CAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGG
AAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGAGTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 130429 -- 130928
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACC
TTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGT
CTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
TGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
Found at i:130502 original size:41 final size:41
Alignment explanation
Indices: 130443--130522 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
130433 ATCAACAATG
* * *
130443 AGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAATA
*
130484 AGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAA
130523 GATCAGGACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (41 bp):
AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAATA
Left flanking sequence: Indices 129943 -- 130442
TCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAG
GTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGAGTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 130523 -- 131022
GATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Found at i:130654 original size:43 final size:42
Alignment explanation
Indices: 130589--130758 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
130579 TTGTATGTCA
* * *
130589 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
130632 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
130670 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
130708 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
130751 TCAGGACT
1 TCAGGACT
130759 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 52 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 130089 -- 130588
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAGTGAG
GAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGAC
CAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTG
AAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTT
AAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTA
AAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 130759 -- 131258
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
Found at i:130737 original size:76 final size:78
Alignment explanation
Indices: 130611--131037 Score: 307
Period size: 76 Copynumber: 5.2 Consensus size: 78
130601 TTATCAAAAA
* * *
130611 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
130674 GACTGATTCTTCT
66 GACTGATTCTTCT
*
130687 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
130752 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * *
130769 GGACAGGACCAAT-TGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
1 GGTCAAGA-C--TGT-C--TT-TCA---CAGTCAGGACTAACCTTACC---AA---AAAGGTCAA
* * *
130831 GACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
50 GACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
130866 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
130929 GACTGATTCTTCT
66 GACTGATTCTTCT
*
130942 GGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--
131006 TCAGGACTGATTCTTCT
62 TCAGGACTGATTCTTCT
131023 GGTCAAGACTGTCTT
1 GGTCAAGACTGTCTT
131038 GAAAGGTCAG
Statistics
Matches: 277, Mismatches: 34, Indels: 75
0.72 0.09 0.19
Matches are distributed among these distances:
75 1 0.00
76 103 0.37
77 4 0.01
79 4 0.01
80 4 0.01
81 51 0.18
82 6 0.02
83 3 0.01
84 15 0.05
85 2 0.01
87 5 0.02
88 1 0.00
89 15 0.05
90 15 0.05
91 1 0.00
92 5 0.02
93 7 0.03
94 2 0.01
95 23 0.08
96 3 0.01
97 7 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 130111 -- 130610
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAGTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAA
AAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 131038 -- 131537
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
Found at i:130915 original size:43 final size:41
Alignment explanation
Indices: 130822--131013 Score: 132
Period size: 43 Copynumber: 4.7 Consensus size: 41
130812 CCAAAAATGG
* * * *
130822 AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAA
*
130863 AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCA-AATCAGGACTAACCTTACCAA
* * * **
130906 AAAGATCAAGACTATC-T--GATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTCAAATCAGGACT-AACCTTACCAA
* * *
130941 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCAA-ATCAGGACTAACCTTACCAA
*
130982 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTCAAA--TCAGGACT
131014 GATTCTTCTG
Statistics
Matches: 113, Mismatches: 22, Indels: 30
0.68 0.13 0.18
Matches are distributed among these distances:
33 11 0.10
35 1 0.01
37 4 0.04
38 16 0.14
39 5 0.04
41 17 0.15
42 7 0.06
43 52 0.46
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (41 bp):
AAAGGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAA
Left flanking sequence: Indices 130322 -- 130821
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCAC
CTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTC
TTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 131014 -- 131513
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
Found at i:130964 original size:19 final size:19
Alignment explanation
Indices: 130942--131052 Score: 64
Period size: 19 Copynumber: 5.6 Consensus size: 19
130932 TGATTCTTCT
*
130942 GGTCAAGACTGTCTTTCAA
1 GGTCAAGACTGTCTTGCAA
* * *
130961 GGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTG-TCTT-GC---AA
*
130985 GGTCAAGACTGTCTTGAAA
1 GGTCAAGACTGTCTTGCAA
* *
131004 GGTCAGGACTGATTCTT-C-T
1 GGTCAAGACTG--TCTTGCAA
*
131023 GGTCAAGACTGTCTTGAAA
1 GGTCAAGACTGTCTTGCAA
*
131042 GGTCAGGACTG
1 GGTCAAGACTG
131053 ATTATGGAAG
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
17 4 0.06
19 42 0.61
20 3 0.04
21 5 0.07
23 3 0.04
24 12 0.17
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (19 bp):
GGTCAAGACTGTCTTGCAA
Left flanking sequence: Indices 130442 -- 130941
GAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGT
CAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTGTCTGGAAAGGTCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 131053 -- 131552
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATT
GCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
Found at i:130967 original size:38 final size:38
Alignment explanation
Indices: 130925--131055 Score: 165
Period size: 38 Copynumber: 3.3 Consensus size: 38
130915 GACTATCTGA
**
130925 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
130963 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
131006 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
131044 TCAGGACTGATT
1 TCAGGACTGATT
131056 ATGGAAGGAC
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 29 0.36
44 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 130425 -- 130924
CATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACT
AACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGA
CTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 131056 -- 131555
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
GACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCA
ATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
Found at i:131225 original size:286 final size:291
Alignment explanation
Indices: 130730--131299 Score: 931
Period size: 286 Copynumber: 2.0 Consensus size: 291
130720 TTACCAAAAA
*
130730 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* * *
130795 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
66 CATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
* *
130860 CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGA
*
130925 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTC
194 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA-GTCAGGACTGACCTTACCAAAAAGATC
130989 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
258 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
131023 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATG
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGTATG
* ** **
131087 CCATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCTTAT
65 CCATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
131146 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGA
131211 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
194 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
131276 AGACTGTCTTGAAAGGTCAGGACT
259 AGACTGTCTTGAAAGGTCAGGACT
131300 TTTGATGGAA
Statistics
Matches: 262, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
286 167 0.64
287 4 0.02
288 1 0.00
289 2 0.01
290 1 0.00
292 1 0.00
293 81 0.31
294 5 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (291 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 130230 -- 130729
AGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGA
CTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACT
AACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGA
CTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
Right flanking sequence: Indices 131300 -- 131799
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAG
GACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTGCTCACCATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTAT
GCCTTCCATAATTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGA
ATTGGAATTGTATGCCATTAGTGCTGACCATACCAAGAATCTCAA
Found at i:131406 original size:24 final size:24
Alignment explanation
Indices: 131377--131422 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
131367 GTCAAGACTG
131377 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
131401 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
131423 ATGGAAGGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 130877 -- 131376
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 131423 -- 131922
ATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACA
AATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCA
ATTGTATGCCTTCCATAATTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCC
TTCAAGAATTGGAATTGTATGCCATTAGTGCTGACCATACCAAGAATCTCAATCAGCACTCTTTT
AAACTTGAAGGTCATGTCACGTCAGAACAAAGCCTTCTTTTTCATCTGAAATGAACTCATCAGAA
AAGTGCCCACAAAGCACTCGCAAAGCATAGGGCTTTGCGAGTGCT
Found at i:131645 original size:28 final size:28
Alignment explanation
Indices: 131450--131635 Score: 315
Period size: 28 Copynumber: 6.6 Consensus size: 28
131440 ATTGCAATTC
131450 AATGCCATTAGTACTCACTTGAC-AACAA
1 AATGCCATTAGTACTCACTTGACAAAC-A
131478 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
131506 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
131534 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
131562 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
131590 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
131618 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
131636 CATACCAACA
Statistics
Matches: 155, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
27 2 0.01
28 150 0.97
29 3 0.02
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 130950 -- 131449
CTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTC
Right flanking sequence: Indices 131636 -- 132135
CATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAA
TTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGGAATTGT
ATGCCATTAGTGCTGACCATACCAAGAATCTCAATCAGCACTCTTTTAAACTTGAAGGTCATGTC
ACGTCAGAACAAAGCCTTCTTTTTCATCTGAAATGAACTCATCAGAAAAGTGCCCACAAAGCACT
CGCAAAGCATAGGGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATGACGTACCCTAAAGCACTCGC
TTCGCGGAACGAGCAAAGCCTTTAGCAAACAAAGCGAGGCGCTATGGAAAGGCAGCCGAAGCGTT
TGAGCATCTTGTGGAAAGTGGAGTGCCTTCCGCTTTGCGAGGCGCTATGGAATGGCAGCCGAAGC
GTTTGTTTGAGGTGGAAAGTGGAGTGGAGTCATCTTTCGCGGTAA
Found at i:131748 original size:55 final size:55
Alignment explanation
Indices: 131682--131787 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
131672 TCCCAATGGC
* *
131682 AATTGTATGCCTTCCATAATTGCAA-TGAGATGCCATTCA-TGCTGACCATACAACA
1 AATTGTATGCCTTCAAGAATTGCAATTG-GATGCCATT-AGTGCTGACCATACAACA
* *
131737 AATTGTATGCCTTCAAGAATTGGAATTGTATGCCATTAGTGCTGACCATAC
1 AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATAC
131788 CAAGAATCTC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 42 0.93
56 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (55 bp):
AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATACAACA
Left flanking sequence: Indices 131182 -- 131681
ACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAAT
TGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACC
ATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGC
Right flanking sequence: Indices 131788 -- 132287
CAAGAATCTCAATCAGCACTCTTTTAAACTTGAAGGTCATGTCACGTCAGAACAAAGCCTTCTTT
TTCATCTGAAATGAACTCATCAGAAAAGTGCCCACAAAGCACTCGCAAAGCATAGGGCTTTGCGA
GTGCTTTGTGGGCTTTGCTCATGACGTACCCTAAAGCACTCGCTTCGCGGAACGAGCAAAGCCTT
TAGCAAACAAAGCGAGGCGCTATGGAAAGGCAGCCGAAGCGTTTGAGCATCTTGTGGAAAGTGGA
GTGCCTTCCGCTTTGCGAGGCGCTATGGAATGGCAGCCGAAGCGTTTGTTTGAGGTGGAAAGTGG
AGTGGAGTCATCTTTCGCGGTAAGCAAAAAGTGCGTTCCGCCGATTCGATCTTCTCGTAGCTCAT
AGGTAGGCGGCTAGATCCATCTGAGTTACTTCATACGCATCTCCTCCACCCCCAAAGAACGACCT
TCCTTCCCTATTGGTCCTCCTTTTTCCCCTCCCTCTTTCCCTTCT
Found at i:132734 original size:30 final size:32
Alignment explanation
Indices: 132690--132754 Score: 116
Period size: 30 Copynumber: 2.1 Consensus size: 32
132680 TCGCAACTTT
132690 CAAAGGCGTCAGGGCTTTGCACAAAGCACTCG
1 CAAAGGCGTCAGGGCTTTGCACAAAGCACTCG
132722 CAAA-GCGT-AGGGCTTTGCACAAAGCACTCG
1 CAAAGGCGTCAGGGCTTTGCACAAAGCACTCG
132752 CAA
1 CAA
132755 CTTTGAATGC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 25 0.76
31 4 0.12
32 4 0.12
ACGTcount: A:0.31, C:0.28, G:0.26, T:0.15
Consensus pattern (32 bp):
CAAAGGCGTCAGGGCTTTGCACAAAGCACTCG
Left flanking sequence: Indices 132190 -- 132689
AGATCCATCTGAGTTACTTCATACGCATCTCCTCCACCCCCAAAGAACGACCTTCCTTCCCTATT
GGTCCTCCTTTTTCCCCTCCCTCTTTCCCTTCTTCCTCTTCGTCTATCCGGGACAGGGCAGGCAG
CCCACATACATGAAGAGAAGAAGAGAGGGGTTCCTTGTCTGTCGGTCGGGCCACAAGTGGAAGCA
ATCGATGCTTTGGTCATTCCGTTGACTCCTTGCTGCCAGTCCGTGCTTGCTGTCATGCTGGCAAG
CGGGGTTTTCGGCTGGTTTTACCTACTATTGGATTTGAACCAATGACTCTCGCCGTATGAAAGCG
ATACTCTAACCGCTGAGTCAAGTAGGTCGAGTCAAGTCAAAGAAAAGAGACCAACGTTGCTCTAA
GAGAAAGCCAACCAAAGCGCAACCGGAGTTCTCGGCCTATGAATGACACTCGCAACGTCGAAATT
GCTTAAGGGAAAAGCGAAGAATGACGTCAGGGAACTCGCAACTTT
Right flanking sequence: Indices 132755 -- 133254
CTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTAATGGCAT
TTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTA
CAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
Found at i:132849 original size:28 final size:28
Alignment explanation
Indices: 132809--132903 Score: 174
Period size: 28 Copynumber: 3.4 Consensus size: 28
132799 AAAGGTCAGG
132809 ACTAATGGCATTTGTTTGTACAGTGAGT
1 ACTAATGGCATTTGTTTGTACAGTGAGT
132837 ACTAATGGCATTTGTTTGT-CAAGTGAGT
1 ACTAATGGCATTTGTTTGTAC-AGTGAGT
132865 ACTAATGGCATTTGTTTGTACAGTGAGT
1 ACTAATGGCATTTGTTTGTACAGTGAGT
132893 ACTAATGGCAT
1 ACTAATGGCAT
132904 ACAATTGCAA
Statistics
Matches: 65, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (28 bp):
ACTAATGGCATTTGTTTGTACAGTGAGT
Left flanking sequence: Indices 132309 -- 132808
AGGGCAGGCAGCCCACATACATGAAGAGAAGAAGAGAGGGGTTCCTTGTCTGTCGGTCGGGCCAC
AAGTGGAAGCAATCGATGCTTTGGTCATTCCGTTGACTCCTTGCTGCCAGTCCGTGCTTGCTGTC
ATGCTGGCAAGCGGGGTTTTCGGCTGGTTTTACCTACTATTGGATTTGAACCAATGACTCTCGCC
GTATGAAAGCGATACTCTAACCGCTGAGTCAAGTAGGTCGAGTCAAGTCAAAGAAAAGAGACCAA
CGTTGCTCTAAGAGAAAGCCAACCAAAGCGCAACCGGAGTTCTCGGCCTATGAATGACACTCGCA
ACGTCGAAATTGCTTAAGGGAAAAGCGAAGAATGACGTCAGGGAACTCGCAACTTTCAAAGGCGT
CAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCACAAAGCACTCGCAACTTTGAATG
CTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGG
Right flanking sequence: Indices 132904 -- 133403
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTGAC
CTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTT
Found at i:133065 original size:95 final size:98
Alignment explanation
Indices: 132887--133066 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
132877 TGTTTGTACA
* *
132887 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
132952 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
132986 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
133047 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
133067 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 132387 -- 132886
CGATGCTTTGGTCATTCCGTTGACTCCTTGCTGCCAGTCCGTGCTTGCTGTCATGCTGGCAAGCG
GGGTTTTCGGCTGGTTTTACCTACTATTGGATTTGAACCAATGACTCTCGCCGTATGAAAGCGAT
ACTCTAACCGCTGAGTCAAGTAGGTCGAGTCAAGTCAAAGAAAAGAGACCAACGTTGCTCTAAGA
GAAAGCCAACCAAAGCGCAACCGGAGTTCTCGGCCTATGAATGACACTCGCAACGTCGAAATTGC
TTAAGGGAAAAGCGAAGAATGACGTCAGGGAACTCGCAACTTTCAAAGGCGTCAGGGCTTTGCAC
AAAGCACTCGCAAAGCGTAGGGCTTTGCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGA
TCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 133067 -- 133566
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTA
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAA
ATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACA
ATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTT
CAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
Found at i:133096 original size:43 final size:43
Alignment explanation
Indices: 133049--133252 Score: 215
Period size: 43 Copynumber: 4.9 Consensus size: 43
133039 CTGACCTTTC
* *
133049 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
133092 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * * **
133135 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGATCT-TTC
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGA
* * *
133173 AAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
133216 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
133253 TGACATACAA
Statistics
Matches: 131, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
37 3 0.02
38 23 0.18
39 2 0.02
42 2 0.02
43 98 0.75
44 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 132549 -- 133048
AGTCAAAGAAAAGAGACCAACGTTGCTCTAAGAGAAAGCCAACCAAAGCGCAACCGGAGTTCTCG
GCCTATGAATGACACTCGCAACGTCGAAATTGCTTAAGGGAAAAGCGAAGAATGACGTCAGGGAA
CTCGCAACTTTCAAAGGCGTCAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCACAA
AGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGG
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 133253 -- 133752
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGT
GAGCACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTT
CTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAG
TCCTGACCTTTCAAGAGAGTCCTTCCATAATTGTGCAATTCTTGAAGGCATACAATTGCCATTAG
TGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCAT
Found at i:133105 original size:19 final size:19
Alignment explanation
Indices: 133078--133148 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
133068 TGGTCAGGTT
133078 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
133097 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
133121 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
133140 AGTCTTGAC
1 AGTCCTGAC
133149 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 132578 -- 133077
AAGAGAAAGCCAACCAAAGCGCAACCGGAGTTCTCGGCCTATGAATGACACTCGCAACGTCGAAA
TTGCTTAAGGGAAAAGCGAAGAATGACGTCAGGGAACTCGCAACTTTCAAAGGCGTCAGGGCTTT
GCACAAAGCACTCGCAAAGCGTAGGGCTTTGCACAAAGCACTCGCAACTTTGAATGCTGAAAGAA
GGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 133149 -- 133648
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACT
CACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGAC
TTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
Found at i:133413 original size:28 final size:28
Alignment explanation
Indices: 133381--133453 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
133371 TGTTGGTATG
*
133381 GTGAGCACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
133409 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
133437 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
133454 ACAATTGTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 132881 -- 133380
TGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTT
GACCGACTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 133454 -- 133953
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAGAGTCCTTCCATAATTGTGCAATTCTTGAAGGCATACAATTGCCATTAGTGCTCC
CAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTT
CCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCT
TGACTTTGAAATTGGCTCGTGACGTGACATGACGTGACGTTGGCTCGCGAGTAGACTAGACTGCG
AGCGTAGAGTGTAGACTCTGCCTCAAAGAGCAAAGCGAAGCGAGA
Found at i:133461 original size:28 final size:28
Alignment explanation
Indices: 133402--133463 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
133392 TGGCATTTGT
****
133402 TTGTCAAGTGAGTACTAATGGCATTTGT
1 TTGTCAAGTGAGTACTAATGGCATACAA
133430 TTGTCAAGTGAGTACTAATGGCATACAA
1 TTGTCAAGTGAGTACTAATGGCATACAA
133458 TTGTCA
1 TTGTCA
133464 TGAGTCCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (28 bp):
TTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 132902 -- 133401
ATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTG
ACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGT
ATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGT
Right flanking sequence: Indices 133464 -- 133963
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGA
GAGTCCTTCCATAATTGTGCAATTCTTGAAGGCATACAATTGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCAC
GAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAA
ATTGGCTCGTGACGTGACATGACGTGACGTTGGCTCGCGAGTAGACTAGACTGCGAGCGTAGAGT
GTAGACTCTGCCTCAAAGAGCAAAGCGAAGCGAGATTTGATGCGA
Found at i:133571 original size:43 final size:43
Alignment explanation
Indices: 133523--133606 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
133513 CTGATCTTTC
* * *
133523 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
133566 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
133607 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 133023 -- 133522
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACC
TGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 133607 -- 134106
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAGAGTCCTTCCATA
ATTGTGCAATTCTTGAAGGCATACAATTGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAG
TGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAAT
CAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGAC
GTGACATGACGTGACGTTGGCTCGCGAGTAGACTAGACTGCGAGCGTAGAGTGTAGACTCTGCCT
CAAAGAGCAAAGCGAAGCGAGATTTGATGCGAGCAAACTCCTGTTACGTCTGTACGAAAGCCTCA
AACTACTAACTATTAACCATAGAAGTGTGACACCTTTCGTAATGGAATGGAAAGCCTACAAACAC
CATAGTCAAGTGAAACCTTTCTTTCCGCCTCCCGTTTTTTATGTT
Found at i:133665 original size:19 final size:16
Alignment explanation
Indices: 133625--133655 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
133615 CATTCTCATT
133625 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
133641 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
133656 AGAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 133125 -- 133624
CTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGA
GCACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 133656 -- 134155
AGAGAGTCCTTCCATAATTGTGCAATTCTTGAAGGCATACAATTGCCATTAGTGCTCCCAATGGC
AATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGT
CACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTT
GAAATTGGCTCGTGACGTGACATGACGTGACGTTGGCTCGCGAGTAGACTAGACTGCGAGCGTAG
AGTGTAGACTCTGCCTCAAAGAGCAAAGCGAAGCGAGATTTGATGCGAGCAAACTCCTGTTACGT
CTGTACGAAAGCCTCAAACTACTAACTATTAACCATAGAAGTGTGACACCTTTCGTAATGGAATG
GAAAGCCTACAAACACCATAGTCAAGTGAAACCTTTCTTTCCGCCTCCCGTTTTTTATGTTCTTT
TATGACGTTTTCTTAGTTTCTATCTGTGACGCCGGCTGTCGATGG
Found at i:142395 original size:28 final size:29
Alignment explanation
Indices: 142352--142415 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 29
142342 GTTGATGGAA
142352 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
142380 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
142408 AATGGCAT
1 AATGGCAT
142416 ACAATTGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 31 0.89
29 4 0.11
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 141852 -- 142351
TTCTGCTTTCGGAACTGAACCTGCTCCTGAACCTACGGAGAGAAAGAGCTATTTTCAAACAAACT
CCTCCAATGAAGAAAGGTAGATGGAAAGCCCCGGATAGTCAACGGCTAAGTACGGGATAAGGAGC
CTAAAGGCGTCGCCGCCCCCTAGACCTCATATCAAGGTACAGACTCAACAACTCTTGCTGACCGA
AAGAAAAGACCGAACGGACAGAGATCTTGATTGCAGGAGCGAGAGCCCCAGGAAGGCAGACGTCG
AGGCACAAGCACGAGCTACAAGAAAGACGGACTGGACTTGTTGCCTAGCCGTCAAAGGCCTCAGA
GCCAACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCACCGAACGAGTGA
AGCGAAAGCGAAGCGAGTGCGCCAACACAAAGCACTCGCAACTTCAAATTGCTGAATTCAGACAA
AGATATTCACTCTTTTGTCAGGGTCAGCATGAATTGTTGATGGAA
Right flanking sequence: Indices 142416 -- 142915
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAATCCTGACTTTTC
CTAAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAG
GGTCAGTACTTTTCATTCTTTGTCTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTA
ATTAAGGTCAGGTTTAAGCTGATTAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGAT
AAGTCAGATAAGGCCAGAGCAAAGTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTC
TTTTTTTTCTTTTTTAAGGAAAGGTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Found at i:142423 original size:28 final size:28
Alignment explanation
Indices: 142364--142425 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
142354 TGGCATTTGT
****
142364 TTGTCAAGTGAGTACTAATGGCATTTTG
1 TTGTCAAGTGAGTACTAATGGCATACAA
142392 TTGTCAAGTGAGTACTAATGGCATACAA
1 TTGTCAAGTGAGTACTAATGGCATACAA
142420 TTGTCA
1 TTGTCA
142426 TGAGTCCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (28 bp):
TTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 141864 -- 142363
AACTGAACCTGCTCCTGAACCTACGGAGAGAAAGAGCTATTTTCAAACAAACTCCTCCAATGAAG
AAAGGTAGATGGAAAGCCCCGGATAGTCAACGGCTAAGTACGGGATAAGGAGCCTAAAGGCGTCG
CCGCCCCCTAGACCTCATATCAAGGTACAGACTCAACAACTCTTGCTGACCGAAAGAAAAGACCG
AACGGACAGAGATCTTGATTGCAGGAGCGAGAGCCCCAGGAAGGCAGACGTCGAGGCACAAGCAC
GAGCTACAAGAAAGACGGACTGGACTTGTTGCCTAGCCGTCAAAGGCCTCAGAGCCAACGTCAAT
TGATGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCACCGAACGAGTGAAGCGAAAGCGAA
GCGAGTGCGCCAACACAAAGCACTCGCAACTTCAAATTGCTGAATTCAGACAAAGATATTCACTC
TTTTGTCAGGGTCAGCATGAATTGTTGATGGAAAATGGCATTTGT
Right flanking sequence: Indices 142426 -- 142925
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAATCCTGACTTTTCCTAAAGAATT
GCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTCAGTACT
TTTCATTCTTTGTCTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAATTAAGGTCA
GGTTTAAGCTGATTAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAAGTCAGATA
AGGCCAGAGCAAAGTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTTTTTTTTCT
TTTTTAAGGAAAGGTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
Found at i:142812 original size:16 final size:16
Alignment explanation
Indices: 142791--142821 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
142781 ACTCATTTCT
142791 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
142807 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
142822 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 142291 -- 142790
TGCTGAATTCAGACAAAGATATTCACTCTTTTGTCAGGGTCAGCATGAATTGTTGATGGAAAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAAT
TGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAATCCTGACTTTTCCTAAA
GAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTCA
GTACTTTTCATTCTTTGTCTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAATTAA
GGTCAGGTTTAAGCTGATTAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAAGTC
AGATAAGGCCAGAGCAAAGTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTTTTT
TTTCTTTTTTAAGGAAAGGTGATGGAAAGGTCAGGACTCATTTCT
Right flanking sequence: Indices 142822 -- 143321
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCT
TCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTAC
TCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAA
AATGTCATTTTCCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAATTGC
AATTGTTTGCCATTCTTGCTGACCCTGACCAAATCTCATTTTGTG
Found at i:142888 original size:16 final size:16
Alignment explanation
Indices: 142867--142897 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
142857 AGGACTCTTT
142867 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
142883 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
142898 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 142367 -- 142866
TCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTC
CTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAATCCTGACTTTTCCTAAAGAATTGCAATT
TCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTCAGTACTTTTCAT
TCTTTGTCTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAATTAAGGTCAGGTTTA
AGCTGATTAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAAGTCAGATAAGGCCA
GAGCAAAGTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTTTTTTTTCTTTTTTA
AGGAAAGGTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTT
Right flanking sequence: Indices 142898 -- 143397
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAATTGTA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTTT
CCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAATTGCAATTGTTTGCC
ATTCTTGCTGACCCTGACCAAATCTCATTTTGTGAATAATGCATTTTTCACGATTTGTCTGACCT
GAATCAGTGACCTTCCGGTGATGGACAGGACTTTCTGTAAAGGTC
Found at i:142966 original size:43 final size:43
Alignment explanation
Indices: 142918--142999 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
142908 ATTGAGGAAA
* * *
142918 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
*
142961 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
143000 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 142418 -- 142917
AATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAATCCTGACTTTTCCT
AAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGG
TCAGTACTTTTCATTCTTTGTCTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAAT
TAAGGTCAGGTTTAAGCTGATTAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAA
GTCAGATAAGGCCAGAGCAAAGTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTT
TTTTTTCTTTTTTAAGGAAAGGTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 143000 -- 143499
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTGTACAACAAAATGTCATTTTCCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTT
CCATGATGGACAATTGCAATTGTTTGCCATTCTTGCTGACCCTGACCAAATCTCATTTTGTGAAT
AATGCATTTTTCACGATTTGTCTGACCTGAATCAGTGACCTTCCGGTGATGGACAGGACTTTCTG
TAAAGGTCAGGACTCATTATGGAAAAGTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAAT
GCTCTGATCCATACCAAAAAGGTCAGGATCCAAAAAGGTCAAGAC
Found at i:143092 original size:28 final size:28
Alignment explanation
Indices: 143069--143220 Score: 227
Period size: 28 Copynumber: 5.3 Consensus size: 28
143059 TGACAATTGT
143069 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
143097 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
143125 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
143153 TTGTATGCCATTAGTACTCACTTGACAACAAA
1 ----ATGCCATTAGTACTCACTTGACAACAAA
143185 ATGCCATTAGTACTCAC-TGTACAACAAA
1 ATGCCATTAGTACTCACTTG-ACAACAAA
*
143213 ATGTCATT
1 ATGCCATT
143221 TTCCATACCA
Statistics
Matches: 116, Mismatches: 1, Indels: 14
0.89 0.01 0.11
Matches are distributed among these distances:
27 3 0.03
28 84 0.72
29 1 0.01
32 28 0.24
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 142569 -- 143068
CTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAATTAAGGTCAGGTTTAAGCTGAT
TAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAA
GTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTTTTTTTTCTTTTTTAAGGAAAG
GTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 143221 -- 143720
TTCCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAATTGCAATTGTTTG
CCATTCTTGCTGACCCTGACCAAATCTCATTTTGTGAATAATGCATTTTTCACGATTTGTCTGAC
CTGAATCAGTGACCTTCCGGTGATGGACAGGACTTTCTGTAAAGGTCAGGACTCATTATGGAAAA
GTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAG
GATCCAAAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
Found at i:143187 original size:60 final size:56
Alignment explanation
Indices: 143069--143220 Score: 227
Period size: 60 Copynumber: 2.6 Consensus size: 56
143059 TGACAATTGT
143069 ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
143125 ATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA----ATGCCATTAGTACTCACTTGACAAAC-AA
*
143185 ATGCCATTAGTACTCAC-TGTACAACAAAATGTCATT
1 ATGCCATTAGTACTCACTTG-ACAACAAAATGCCATT
143221 TTCCATACCA
Statistics
Matches: 89, Mismatches: 1, Indels: 12
0.87 0.01 0.12
Matches are distributed among these distances:
56 35 0.39
59 5 0.06
60 49 0.55
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.28
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 142569 -- 143068
CTGACATGATGAACATTCAAAAGAATTGAATTGTTTAATTTAATTAAGGTCAGGTTTAAGCTGAT
TAAGGTAAGGTCAGATAAGGTCAGAGCAAATTAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAA
GTCAGCAGAGCAAAGCCCTCTTGTGAATTATTCAGATCACTCTTTTTTTTCTTTTTTAAGGAAAG
GTGATGGAAAGGTCAGGACTCATTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 143221 -- 143720
TTCCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAATTGCAATTGTTTG
CCATTCTTGCTGACCCTGACCAAATCTCATTTTGTGAATAATGCATTTTTCACGATTTGTCTGAC
CTGAATCAGTGACCTTCCGGTGATGGACAGGACTTTCTGTAAAGGTCAGGACTCATTATGGAAAA
GTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAG
GATCCAAAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
Found at i:143626 original size:76 final size:78
Alignment explanation
Indices: 143536--143949 Score: 281
Period size: 76 Copynumber: 5.0 Consensus size: 78
143526 TTATCAAAAA
*
143536 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
143599 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
143612 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
* * ***
143677 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * *
143694 GGACAGGACCAAT-TGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
1 GGTCAAGA-C--TGT-C--TT-TCA---CAGTCAGGACTAACCTTACCAAAAA--G--A--TCAA
* * *
143756 GACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
50 GACTGTCTTG-AATCAGGACTGA--TTCTTC----T
*
143791 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
143854 GACTGATTCTTCT
66 GACTGATTCTTCT
* * *
143867 GGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--
143931 TCAGGACTGATTCTTCT
62 TCAGGACTGATTCTTCT
143948 GG
1 GG
143950 AAAGGTCAAG
Statistics
Matches: 264, Mismatches: 34, Indels: 75
0.71 0.09 0.20
Matches are distributed among these distances:
75 1 0.00
76 103 0.39
77 4 0.02
79 4 0.02
80 4 0.02
81 38 0.14
82 6 0.02
83 3 0.01
84 11 0.04
85 2 0.01
86 1 0.00
87 3 0.01
88 2 0.01
89 20 0.08
90 20 0.08
91 2 0.01
92 3 0.01
93 7 0.03
94 2 0.01
95 18 0.07
96 3 0.01
97 7 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 143036 -- 143535
CCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTTTCCATACCA
AAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAATTGCAATTGTTTGCCATTCTTGC
TGACCCTGACCAAATCTCATTTTGTGAATAATGCATTTTTCACGATTTGTCTGACCTGAATCAGT
GACCTTCCGGTGATGGACAGGACTTTCTGTAAAGGTCAGGACTCATTATGGAAAAGTCAGGATCC
AAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAGGATCCAAAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 143950 -- 144449
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAA
GGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTT
GAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCAT
TAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATAC
CCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGGACTCATT
ATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAA
Found at i:143683 original size:43 final size:43
Alignment explanation
Indices: 143514--143669 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
143504 TTGTATGTCA
* * *
143514 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * * *
143557 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
143595 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
143633 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
143670 GAAAGGTCAG
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.13
35 1 0.01
37 5 0.06
38 19 0.22
39 5 0.06
41 1 0.01
43 45 0.52
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 143014 -- 143513
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAA
CAAAATGTCATTTTCCATACCAAAAAGTGGAATTGTATGCCATTCTTGCTTCCATGATGGACAAT
TGCAATTGTTTGCCATTCTTGCTGACCCTGACCAAATCTCATTTTGTGAATAATGCATTTTTCAC
GATTTGTCTGACCTGAATCAGTGACCTTCCGGTGATGGACAGGACTTTCTGTAAAGGTCAGGACT
CATTATGGAAAAGTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATAC
CAAAAAGGTCAGGATCCAAAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 143670 -- 144169
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTT
GACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGC
Found at i:143931 original size:19 final size:19
Alignment explanation
Indices: 143907--143981 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
143897 ACCTTACCAA
143907 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
143926 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
143950 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
143969 AAAGGTCAGGACT
1 AAAGGTCAAGACT
143982 CATTCTTCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 143407 -- 143906
TATGGAAAAGTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAA
AAAGGTCAGGATCCAAAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 143982 -- 144481
CATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCA
TTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACC
ATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTG
TTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAG
Found at i:143939 original size:43 final size:42
Alignment explanation
Indices: 143747--143981 Score: 188
Period size: 43 Copynumber: 5.7 Consensus size: 42
143737 CCAAAAATGG
* *
143747 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* * *
143788 AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
143831 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * * *
143866 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGACCTTACCAA
* ***
143907 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
143950 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
143982 CATTCTTCTG
Statistics
Matches: 153, Mismatches: 25, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 8 0.05
43 86 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 143247 -- 143746
GCCATTCTTGCTTCCATGATGGACAATTGCAATTGTTTGCCATTCTTGCTGACCCTGACCAAATC
TCATTTTGTGAATAATGCATTTTTCACGATTTGTCTGACCTGAATCAGTGACCTTCCGGTGATGG
ACAGGACTTTCTGTAAAGGTCAGGACTCATTATGGAAAAGTCAGGATCCAAAAAGGTGAGGACTA
ATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAGGATCCAAAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 143982 -- 144481
CATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCA
TTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACC
ATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTG
TTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAG
Found at i:143952 original size:24 final size:24
Alignment explanation
Indices: 143925--144005 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
143915 AGACTGTCTT
143925 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
143949 GAAAGGTCAAGACTG--TC-T-T-
1 GAAAGGTCAGGACTGATTCTTCTG
*
143968 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
143992 GAAAGGTGAGGACT
1 GAAAGGTCAGGACT
144006 CTTTTGAAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
19 13 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 27 0.56
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 143425 -- 143924
CAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAGGATCCAAAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 144006 -- 144505
CTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAG
GACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATT
GTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCAT
TAACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCA
GGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGC
AATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAA
AATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATA
GAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATG
Found at i:143987 original size:43 final size:43
Alignment explanation
Indices: 143907--144025 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
143897 ACCTTACCAA
*
143907 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
143950 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
* * * *
143993 AAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
144026 TGAAAGGTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 143407 -- 143906
TATGGAAAAGTCAGGATCCAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAA
AAAGGTCAGGATCCAAAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 144026 -- 144525
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAAT
TGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTC
AGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACT
CACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCT
TAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACA
Found at i:144006 original size:24 final size:24
Alignment explanation
Indices: 143925--144025 Score: 96
Period size: 19 Copynumber: 4.6 Consensus size: 24
143915 AGACTGTCTT
*
143925 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTCATTCTTCTG
* *
143949 GAAAGGTCAAGACT--GTC-T-T-
1 GAAAGGTCAGGACTCATTCTTCTG
143968 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTCATTCTTCTG
*
143992 GAAAGGTGAGGACTC--T-TT-T-
1 GAAAGGTCAGGACTCATTCTTCTG
144011 GAAAGGTCAGGACTC
1 GAAAGGTCAGGACTC
144026 TGAAAGGTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
19 27 0.41
20 2 0.03
21 5 0.08
22 4 0.06
23 1 0.02
24 27 0.41
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (24 bp):
GAAAGGTCAGGACTCATTCTTCTG
Left flanking sequence: Indices 143425 -- 143924
CAAAAAGGTGAGGACTAATTGCAATTCAATGCTCTGATCCATACCAAAAAGGTCAGGATCCAAAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 144026 -- 144525
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAAT
TGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTC
AGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACT
CACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCT
TAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACA
Found at i:144031 original size:16 final size:16
Alignment explanation
Indices: 144010--144040 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
144000 AGGACTCTTT
144010 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
144026 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
144041 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 143510 -- 144009
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTT
Right flanking sequence: Indices 144041 -- 144540
AATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
ATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAATTGTATGCCATTAGTG
CTGACCATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGG
ACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTG
CAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
Found at i:144141 original size:32 final size:32
Alignment explanation
Indices: 144100--144193 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
144090 GACTCATTGC
144100 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144132 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144164 AA----ATGCCATTAGTACTCAC-TGTACAACA
1 AATTGTATGCCATTAGTACTCACTTG-ACAACA
144192 AA
1 AA
144194 ATGTCATTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
27 2 0.03
28 25 0.41
32 34 0.56
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (32 bp):
AATTGTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 143600 -- 144099
ACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 144194 -- 144693
ATGTCATTAACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGA
AAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACT
CATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGA
AAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCA
TACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGG
Found at i:144170 original size:28 final size:28
Alignment explanation
Indices: 144106--144202 Score: 133
Period size: 28 Copynumber: 3.3 Consensus size: 28
144096 TTGCAATTGT
144106 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
144134 TTGTATGCCATTAGTACTCACTTGACAACAAA
1 ----ATGCCATTAGTACTCACTTGACAACAAA
144166 ATGCCATTAGTACTCAC-TGTACAACAAA
1 ATGCCATTAGTACTCACTTG-ACAACAAA
*
144194 ATGTCATTA
1 ATGCCATTA
144203 ACCATACCCA
Statistics
Matches: 63, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
32 28 0.44
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 143606 -- 144105
TCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAA
GGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 144203 -- 144702
ACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGG
ACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAA
TTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGA
ACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGG
ACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAAT
GAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTC
Found at i:144372 original size:32 final size:32
Alignment explanation
Indices: 144331--144410 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
144321 GACTCATTGC
144331 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144363 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144395 AA----ATGCCATTAGTACT
1 AATTGTATGCCATTAGTACT
144411 TTCCTTAGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
28 14 0.29
32 34 0.71
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (32 bp):
AATTGTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 143831 -- 144330
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAAT
TGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGGACTCATTATGGAAAAGTC
AGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 144411 -- 144910
TTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCC
AAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATTGCAATG
AAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGGAC
TCATTATGGAAAAGTCAGGAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATT
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTCTT
Found at i:144534 original size:28 final size:28
Alignment explanation
Indices: 144502--144572 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
144492 ATTGCAATTC
144502 AATGCCATTAGTACTCACT-TGACAACAA
1 AATGCCATTAGTACTCACTGT-ACAACAA
144530 AATGCCATTAGTACTCACTGTACAACAA
1 AATGCCATTAGTACTCACTGTACAACAA
144558 AATGCCATTAGTACT
1 AATGCCATTAGTACT
144573 TTCCTTATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTGTACAACAA
Left flanking sequence: Indices 144002 -- 144501
GACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
ACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACA
AATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATG
TCATTAACCATACCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
TTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCAT
TATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 144573 -- 145072
TTCCTTATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAAT
GTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTC
TTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCC
ATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAA
CAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTCTTCACTATACCAAAAACTTGAAAGGAAAGGTGATTATGGAATGGAAAAGTCAGG
ACTTGATTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTATGGAAAAG
TCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGT
Found at i:144727 original size:16 final size:16
Alignment explanation
Indices: 144706--144736 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
144696 AGGATTCTTT
144706 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
144722 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
144737 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 144206 -- 144705
ATACCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAATTCATGGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGC
CATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACA
GTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACT
CATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTCTTT
Right flanking sequence: Indices 144737 -- 145236
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTCTTCACTATACCAAAAACTTGAAA
GGAAAGGTGATTATGGAATGGAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCATTATGGAAAA
GTCAGGAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTC
AGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCA
Found at i:144844 original size:32 final size:32
Alignment explanation
Indices: 144803--144896 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 32
144793 GACTCATTGC
144803 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144835 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144867 AA----ATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
144895 AA
1 AA
144897 ATGCCATTAG
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
28 28 0.45
32 34 0.55
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (32 bp):
AATTGTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 144303 -- 144802
TTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTG
TATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGAC
TCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCA
ATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGC
CATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGT
ACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAG
GTCAGGATTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 144897 -- 145396
ATGCCATTAGTCTTCACTATACCAAAAACTTGAAAGGAAAGGTGATTATGGAATGGAAAAGTCAG
GACTTGATTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTATGGAAAA
GTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTC
CTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAA
AAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTAC
TCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGT
Found at i:144914 original size:28 final size:28
Alignment explanation
Indices: 144809--144907 Score: 162
Period size: 28 Copynumber: 3.4 Consensus size: 28
144799 TTGCAATTGT
144809 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
144837 TTGTATGCCATTAGTACTCACTTGACAACAAA
1 ----ATGCCATTAGTACTCACTTGACAACAAA
144869 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
144897 ATGCCATTAGT
1 ATGCCATTAGT
144908 CTTCACTATA
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
28 39 0.58
32 28 0.42
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 144309 -- 144808
TTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTT
TGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAG
TACTTTCCTTATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACA
AAATGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGG
ATTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 144908 -- 145407
CTTCACTATACCAAAAACTTGAAAGGAAAGGTGATTATGGAATGGAAAAGTCAGGACTTGATTGA
AAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
CAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAG
GTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGAC
TCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAA
CAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATT
Found at i:144974 original size:19 final size:20
Alignment explanation
Indices: 144949--145003 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
144939 TGATTATGGA
144949 ATGGAAAAGTCAGGACT-TG
1 ATGGAAAAGTCAGGACTATG
* * *
144968 ATTGAAAGGTCAGGACTCATT
1 ATGGAAAAGTCAGGACT-ATG
144989 ATGGAAAAGTCAGGA
1 ATGGAAAAGTCAGGA
145004 AGGTCAGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
21 14 0.48
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (20 bp):
ATGGAAAAGTCAGGACTATG
Left flanking sequence: Indices 144449 -- 144948
AGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTT
ATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATT
AACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTCTTTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAG
GACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATT
GTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCAT
TAGTCTTCACTATACCAAAAACTTGAAAGGAAAGGTGATTATGGA
Right flanking sequence: Indices 145004 -- 145503
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCA
TTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAA
GGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATA
CCCAATGGCAATTGTATGCCATTAGTACATCACACAAATTGTATG
Found at i:145009 original size:30 final size:30
Alignment explanation
Indices: 144973--145061 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
144963 ACTTGATTGA
144973 AAGGTCAGGACTCATTATGGAAAAGTCAGG
1 AAGGTCAGGACTCATTATGGAAAAGTCAGG
145003 AAGGTCAGGACTCATTATGGAAAAGTCAGG
1 AAGGTCAGGACTCATTATGGAAAAGTCAGG
* *
145033 AAGGTCAGGACTC-TT-TTGAAAGGTCAGG
1 AAGGTCAGGACTCATTATGGAAAAGTCAGG
145061 A
1 A
145062 CTCTGAAAGG
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
28 12 0.21
29 2 0.04
30 43 0.75
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.21
Consensus pattern (30 bp):
AAGGTCAGGACTCATTATGGAAAAGTCAGG
Left flanking sequence: Indices 144473 -- 144972
TCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCAT
TAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATTGCA
ATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAG
GACTCATTATGGAAAAGTCAGGAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTCTTCACTATACCAAAAACTT
GAAAGGAAAGGTGATTATGGAATGGAAAAGTCAGGACTTGATTGA
Right flanking sequence: Indices 145062 -- 145561
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTC
AGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCA
AGACTCATTATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTT
ATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATT
AACCATACCCAATGGCAATTGTATGCCATTAGTACATCACACAAATTGTATGTCCATCAAAATTC
ATGCTGACCATACCACAAATTGTATGCCATTAGTGTCCATAAATT
Found at i:145070 original size:16 final size:17
Alignment explanation
Indices: 145033--145079 Score: 69
Period size: 16 Copynumber: 2.7 Consensus size: 17
145023 AAAAGTCAGG
145033 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTC--TTGA
145052 AAGGTCAGGACTC-TGA
1 AAGGTCAGGACTCTTGA
145068 AAGGTCAGGACT
1 AAGGTCAGGACT
145080 AATGAGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.54
19 13 0.46
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (17 bp):
AAGGTCAGGACTCTTGA
Left flanking sequence: Indices 144533 -- 145032
GCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCA
TTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAG
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTCTTCACTATACCAAA
AACTTGAAAGGAAAGGTGATTATGGAATGGAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCAT
TATGGAAAAGTCAGGAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 145080 -- 145579
AATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
ATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAG
TCAGGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTC
ATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAA
TTGTATGCCATTAGTACATCACACAAATTGTATGTCCATCAAAATTCATGCTGACCATACCACAA
ATTGTATGCCATTAGTGTCCATAAATTGCAATTAGATGCCATTAG
Found at i:145180 original size:32 final size:32
Alignment explanation
Indices: 145139--145218 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
145129 GACTCATTGC
145139 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
145171 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
145203 AA----ATGCCATTAGTACT
1 AATTGTATGCCATTAGTACT
145219 TTCCTTAGAG
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
28 14 0.29
32 34 0.71
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (32 bp):
AATTGTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 144639 -- 145138
TCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGATTCT
TTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCA
TACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAC
AAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAAT
GCCATTAGTCTTCACTATACCAAAAACTTGAAAGGAAAGGTGATTATGGAATGGAAAAGTCAGGA
CTTGATTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCATTATGGAAAAGT
CAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 145219 -- 145718
TTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCAGGATCC
AAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATTGCAATG
AAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAATTGTATGCC
ATTAGTACATCACACAAATTGTATGTCCATCAAAATTCATGCTGACCATACCACAAATTGTATGC
CATTAGTGTCCATAAATTGCAATTAGATGCCATTAGTGCTGACCATACCACAAATTGTATGCCAT
TAGTGTTTCATTGAAGAGAAAGACAATTCCAATGACCATCAAACCTTTCCCTTCTTTCAATCAAG
CTTATCAAAATGACATGACGGACTATAGGGAAGCCAAAGAGTGTG
Found at i:145342 original size:28 final size:28
Alignment explanation
Indices: 145310--145380 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
145300 ATTGCAATTC
145310 AATGCCATTAGTACTCACT-TGACAACAA
1 AATGCCATTAGTACTCACTGT-ACAACAA
145338 AATGCCATTAGTACTCACTGTACAACAA
1 AATGCCATTAGTACTCACTGTACAACAA
145366 AATGCCATTAGTACT
1 AATGCCATTAGTACT
145381 TTCCTTATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTGTACAACAA
Left flanking sequence: Indices 144810 -- 145309
TGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTCTTCACTATACCAAAAACTTGAAAGGAAAGGT
GATTATGGAATGGAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCA
TTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCAT
TATAGAACAGTCAGGATCCAAAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 145381 -- 145880
TTCCTTATTGAAAGGTCAGGACTCATTGCAATGAAATGCCATTAGTACTCACTGTACAACAAAAT
GTCATTAACCATACCCAATGGCAATTGTATGCCATTAGTACATCACACAAATTGTATGTCCATCA
AAATTCATGCTGACCATACCACAAATTGTATGCCATTAGTGTCCATAAATTGCAATTAGATGCCA
TTAGTGCTGACCATACCACAAATTGTATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTCCAA
TGACCATCAAACCTTTCCCTTCTTTCAATCAAGCTTATCAAAATGACATGACGGACTATAGGGAA
GCCAAAGAGTGTGCTTTCTTATCAAAAGCACTAATGGCACTCATTATGAAAAAGAAGGCTTTGTT
CTGACCTGAATAAGGACGTGACATGACCTTCAAGAGAAGATTGAAAGGAGTGCTTGAATTGGACT
CAAAGGTAGGCACTAATGCCATTCAAAGTGTCCCTTAAGCACTCG
Found at i:145611 original size:32 final size:32
Alignment explanation
Indices: 145518--145613 Score: 105
Period size: 32 Copynumber: 3.1 Consensus size: 32
145508 TCAAAATTCA
145518 TGCTGACCATACCACAAATTGTATGCCATTAG
1 TGCTGACCATACCACAAATTGTATGCCATTAG
*
145550 TG-T--CCATA-AATTGC-AATTAG-ATGCCATTAG
1 TGCTGACCATACCA---CAAATT-GTATGCCATTAG
145580 TGCTGACCATACCACAAATTGTATGCCATTAG
1 TGCTGACCATACCACAAATTGTATGCCATTAG
145612 TG
1 TG
145614 TTTCATTGAA
Statistics
Matches: 52, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
28 1 0.02
29 5 0.10
30 16 0.31
31 6 0.12
32 18 0.35
33 5 0.10
34 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (32 bp):
TGCTGACCATACCACAAATTGTATGCCATTAG
Left flanking sequence: Indices 145018 -- 145517
TATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTTTCCTTAGAGAAAGGTCAGGACTCTGTTTGAAAGGTCAAGACTCATTATAGAACAGTCA
GGATCCAAAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGC
CATTAGTACTCACTGTACAACAAAATGCCATTAGTACTTTCCTTATTGAAAGGTCAGGACTCATT
GCAATGAAATGCCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCCAATGGCAATTG
TATGCCATTAGTACATCACACAAATTGTATGTCCATCAAAATTCA
Right flanking sequence: Indices 145614 -- 146113
TTTCATTGAAGAGAAAGACAATTCCAATGACCATCAAACCTTTCCCTTCTTTCAATCAAGCTTAT
CAAAATGACATGACGGACTATAGGGAAGCCAAAGAGTGTGCTTTCTTATCAAAAGCACTAATGGC
ACTCATTATGAAAAAGAAGGCTTTGTTCTGACCTGAATAAGGACGTGACATGACCTTCAAGAGAA
GATTGAAAGGAGTGCTTGAATTGGACTCAAAGGTAGGCACTAATGCCATTCAAAGTGTCCCTTAA
GCACTCGCAACTTTGAATGGCTTTTGACTTTGTCTTTGAATCTCGCAAAGCTTTGGCTTGACCTT
TGCTGTGACAAAGCACACTCGCTTCGCTTTGGCTTTGCCTATCAGTGAATGGCATTAGTGCAAAG
CACACTCGCTTCGCTTTGGCTTTGCCTAAAGATGCACAAAGCACGCACTCGCAAAGCGAAAAAAG
AGGGCTGATCTAAGACAAAATTCACTCTTCTTTTGCTTTGATGAG
Found at i:146474 original size:32 final size:32
Alignment explanation
Indices: 146433--146540 Score: 88
Period size: 32 Copynumber: 3.4 Consensus size: 32
146423 TTCAATGACA
146433 CACTAATGGCATACAATTTGTTGTATGGTCAG
1 CACTAATGGCATACAATTTGTTGTATGGTCAG
146465 CACTAATGGCATCTCATTGCAATTTG-TGATATGGT---
1 CACTAATGGCA--T-A---CAATTTGTTG-TATGGTCAG
146500 --C-AATGGCATACAATTTGTTGTATGGTCAG
1 CACTAATGGCATACAATTTGTTGTATGGTCAG
146529 CA-TGAATGGCAT
1 CACT-AATGGCAT
146541 CTCATTGCAA
Statistics
Matches: 61, Mismatches: 0, Indels: 30
0.67 0.00 0.33
Matches are distributed among these distances:
26 13 0.21
27 2 0.03
29 1 0.02
30 1 0.02
32 26 0.43
33 1 0.02
34 1 0.02
35 1 0.02
37 2 0.03
38 13 0.21
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (32 bp):
CACTAATGGCATACAATTTGTTGTATGGTCAG
Left flanking sequence: Indices 145933 -- 146432
GACCTTTGCTGTGACAAAGCACACTCGCTTCGCTTTGGCTTTGCCTATCAGTGAATGGCATTAGT
GCAAAGCACACTCGCTTCGCTTTGGCTTTGCCTAAAGATGCACAAAGCACGCACTCGCAAAGCGA
AAAAAGAGGGCTGATCTAAGACAAAATTCACTCTTCTTTTGCTTTGATGAGCTAATTCAGACAAA
ATGGTAGGAACTATGTTACCTTTATGAGTTCCCTTCTTGAAATAAATTCCAATGACCGTCAAACC
TTTCCCTTATTTAAGAAAGCACTCGCAAAGCGAAATCTTTAACAAAGCACTCGCAACTTTCAATG
GCATTAGCTTCCTTCAGAAAGCACTCCTTTCAATCTTCTCTTGAAGTTATGAAGCTTATTAAGCA
AAGCCTTCTTGTCTTATCTTTTGTGAGCTCATATCATCAGACTGAAAGAAGGGAACTCATCAAAG
TTTGATGGTCATTGGAATTGTCTTTCTCTTTGATCTTCAATGACA
Right flanking sequence: Indices 146541 -- 147040
CTCATTGCAATTATGGTTGGTATACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACA
ATTTGTGTGATGTACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACA
GTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAG
TACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTT
TTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGG
AAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGT
ACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGAC
TTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGTC
Found at i:146581 original size:55 final size:58
Alignment explanation
Indices: 146438--146590 Score: 197
Period size: 64 Copynumber: 2.6 Consensus size: 58
146428 TGACACACTA
146438 ATGGCATACAATTTGTTGTATGGTCAGCACT-AATGGCATCTCATTGCAATTTGTGATATGGT
1 ATGGCATACAATTTGTTGTATGGTCAGCA-TGAATGGCATCTCATTGCAA--T-T-ATATGGT
146500 CAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAA-T-TATGGT
1 --ATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATATGGT
* *
146558 -TGGTATACAATTTGTGGTATGGTCAGCATGAAT
1 ATGGCATACAATTTGTTGTATGGTCAGCATGAAT
146591 TTTGATGGAC
Statistics
Matches: 86, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
55 31 0.36
58 6 0.07
60 1 0.01
63 1 0.01
64 47 0.55
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.36
Consensus pattern (58 bp):
ATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATATGGT
Left flanking sequence: Indices 145938 -- 146437
TTGCTGTGACAAAGCACACTCGCTTCGCTTTGGCTTTGCCTATCAGTGAATGGCATTAGTGCAAA
GCACACTCGCTTCGCTTTGGCTTTGCCTAAAGATGCACAAAGCACGCACTCGCAAAGCGAAAAAA
GAGGGCTGATCTAAGACAAAATTCACTCTTCTTTTGCTTTGATGAGCTAATTCAGACAAAATGGT
AGGAACTATGTTACCTTTATGAGTTCCCTTCTTGAAATAAATTCCAATGACCGTCAAACCTTTCC
CTTATTTAAGAAAGCACTCGCAAAGCGAAATCTTTAACAAAGCACTCGCAACTTTCAATGGCATT
AGCTTCCTTCAGAAAGCACTCCTTTCAATCTTCTCTTGAAGTTATGAAGCTTATTAAGCAAAGCC
TTCTTGTCTTATCTTTTGTGAGCTCATATCATCAGACTGAAAGAAGGGAACTCATCAAAGTTTGA
TGGTCATTGGAATTGTCTTTCTCTTTGATCTTCAATGACACACTA
Right flanking sequence: Indices 146591 -- 147090
TTTGATGGACATACAATTTGTGTGATGTACTAATGGCATACAATTGCCATTGGGTATGGTTAATG
ACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAAT
TTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTGAATTGCAA
TGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAGAGTCCT
GACCTTTCTCTAAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATT
TGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGTCAGCAC
TAATGGCATACAATTGCCATTGGGTATGGTTAATGACATTTTGTT
Found at i:146729 original size:32 final size:28
Alignment explanation
Indices: 146651--146776 Score: 191
Period size: 28 Copynumber: 4.4 Consensus size: 28
146641 TGGGTATGGT
*
146651 TAATGACATTTTGTTGT-ACAGTGAGTAC
1 TAATGGCATTTTGTTGTCA-AGTGAGTAC
146679 TAATGGCATTTTGTTGTCAAGTGAGTAC
1 TAATGGCATTTTGTTGTCAAGTGAGTAC
146707 TAATGGCATACAATTTGTTGTCAAGTGAGTAC
1 TAATGGCAT----TTTGTTGTCAAGTGAGTAC
146739 TAATGGCATTTTGTTGTCAAGTGAGTAC
1 TAATGGCATTTTGTTGTCAAGTGAGTAC
146767 TAATGGCATT
1 TAATGGCATT
146777 GAATTGCAAT
Statistics
Matches: 92, Mismatches: 1, Indels: 10
0.89 0.01 0.10
Matches are distributed among these distances:
28 63 0.68
29 1 0.01
32 28 0.30
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
TAATGGCATTTTGTTGTCAAGTGAGTAC
Left flanking sequence: Indices 146151 -- 146650
ATGAGTTCCCTTCTTGAAATAAATTCCAATGACCGTCAAACCTTTCCCTTATTTAAGAAAGCACT
CGCAAAGCGAAATCTTTAACAAAGCACTCGCAACTTTCAATGGCATTAGCTTCCTTCAGAAAGCA
CTCCTTTCAATCTTCTCTTGAAGTTATGAAGCTTATTAAGCAAAGCCTTCTTGTCTTATCTTTTG
TGAGCTCATATCATCAGACTGAAAGAAGGGAACTCATCAAAGTTTGATGGTCATTGGAATTGTCT
TTCTCTTTGATCTTCAATGACACACTAATGGCATACAATTTGTTGTATGGTCAGCACTAATGGCA
TCTCATTGCAATTTGTGATATGGTCAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCAT
CTCATTGCAATTATGGTTGGTATACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACA
ATTTGTGTGATGTACTAATGGCATACAATTGCCATTGGGTATGGT
Right flanking sequence: Indices 146777 -- 147276
GAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAA
CAGAGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGG
CATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTAT
GGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGT
ACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAA
TGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTC
Found at i:146734 original size:60 final size:60
Alignment explanation
Indices: 146660--146775 Score: 216
Period size: 60 Copynumber: 1.9 Consensus size: 60
146650 TTAATGACAT
146660 TTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAA
1 TTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAA
146720 TTTGTTGT-CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
1 TTTGTTGTAC-AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
146776 TGAATTGCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
59 1 0.02
60 54 0.98
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (60 bp):
TTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 146160 -- 146659
CTTCTTGAAATAAATTCCAATGACCGTCAAACCTTTCCCTTATTTAAGAAAGCACTCGCAAAGCG
AAATCTTTAACAAAGCACTCGCAACTTTCAATGGCATTAGCTTCCTTCAGAAAGCACTCCTTTCA
ATCTTCTCTTGAAGTTATGAAGCTTATTAAGCAAAGCCTTCTTGTCTTATCTTTTGTGAGCTCAT
ATCATCAGACTGAAAGAAGGGAACTCATCAAAGTTTGATGGTCATTGGAATTGTCTTTCTCTTTG
ATCTTCAATGACACACTAATGGCATACAATTTGTTGTATGGTCAGCACTAATGGCATCTCATTGC
AATTTGTGATATGGTCAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCA
ATTATGGTTGGTATACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTG
ATGTACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACAT
Right flanking sequence: Indices 146776 -- 147275
TGAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAA
ACAGAGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATG
GCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTA
TGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAG
TACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTA
ATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
Found at i:146923 original size:32 final size:32
Alignment explanation
Indices: 146868--146947 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
146858 CTCTAAGGAA
146868 AGTACTAATGGCAT----TTTGTTGTCAAGTG
1 AGTACTAATGGCATACAATTTGTTGTCAAGTG
146896 AGTACTAATGGCATACAATTTGTTGTCAAGTG
1 AGTACTAATGGCATACAATTTGTTGTCAAGTG
146928 AGTACTAATGGCATACAATT
1 AGTACTAATGGCATACAATT
146948 GCAATGAGTC
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
28 14 0.29
32 34 0.71
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (32 bp):
AGTACTAATGGCATACAATTTGTTGTCAAGTG
Left flanking sequence: Indices 146368 -- 146867
AAGAAGGGAACTCATCAAAGTTTGATGGTCATTGGAATTGTCTTTCTCTTTGATCTTCAATGACA
CACTAATGGCATACAATTTGTTGTATGGTCAGCACTAATGGCATCTCATTGCAATTTGTGATATG
GTCAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGTTGGTA
TACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTACTAATGGC
ATACAATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGT
TGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCA
AGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAA
TGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGGAA
Right flanking sequence: Indices 146948 -- 147447
GCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCC
TGACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTTA
ATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATAC
AATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTC
CTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAG
AGTCCTCACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGA
Found at i:147108 original size:28 final size:28
Alignment explanation
Indices: 147076--147168 Score: 116
Period size: 28 Copynumber: 3.2 Consensus size: 28
147066 TGGGTATGGT
147076 TAATGACATTTTGTTGT-ACAGTGAGTAC
1 TAATGACATTTTGTTGTCA-AGTGAGTAC
*
147104 TAATGGCATTTTGTTGTCAAGTGAGTAC
1 TAATGACATTTTGTTGTCAAGTGAGTAC
*
147132 TAATGGCATACAATTTGTTGTCAAGTGAGTAC
1 TAAT-G---ACATTTTGTTGTCAAGTGAGTAC
147164 TAATG
1 TAATG
147169 GCATACAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
28 29 0.51
29 2 0.04
31 1 0.02
32 25 0.44
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
TAATGACATTTTGTTGTCAAGTGAGTAC
Left flanking sequence: Indices 146576 -- 147075
ATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTACTAATGGCATACAATTGCCAT
TGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTA
CTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAAT
GGCATTGAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCT
TTCAAACAGAGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTT
TTGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGT
Right flanking sequence: Indices 147169 -- 147668
GCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTT
CAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAG
Found at i:147154 original size:32 final size:32
Alignment explanation
Indices: 147085--147178 Score: 144
Period size: 32 Copynumber: 3.1 Consensus size: 32
147075 TTAATGACAT
147085 TTTGTTGT-ACAGTGAGTACTAATGGCAT----
1 TTTGTTGTCA-AGTGAGTACTAATGGCATACAA
147113 TTTGTTGTCAAGTGAGTACTAATGGCATACAA
1 TTTGTTGTCAAGTGAGTACTAATGGCATACAA
147145 TTTGTTGTCAAGTGAGTACTAATGGCATACAA
1 TTTGTTGTCAAGTGAGTACTAATGGCATACAA
147177 TT
1 TT
147179 GCAATGAGTC
Statistics
Matches: 61, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
28 26 0.43
29 1 0.02
32 34 0.56
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (32 bp):
TTTGTTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 146585 -- 147084
ATGAATTTTGATGGACATACAATTTGTGTGATGTACTAATGGCATACAATTGCCATTGGGTATGG
TTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCA
TACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTGAA
TTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAG
AGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
ACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGT
CAGCACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACAT
Right flanking sequence: Indices 147179 -- 147678
GCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
Found at i:147259 original size:16 final size:16
Alignment explanation
Indices: 147238--147268 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
147228 CATTCTCATT
147238 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
147254 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
147269 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 146738 -- 147237
CTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTTT
GGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGGAA
AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGACTT
TTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATACAATTGC
CATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 147269 -- 147768
AAAGAGTCCTCACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAA
TACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAG
Found at i:147276 original size:19 final size:19
Alignment explanation
Indices: 147238--147371 Score: 85
Period size: 19 Copynumber: 6.7 Consensus size: 19
147228 CATTCTCATT
*
147238 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAC
*
147254 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
* *
147273 AGTCCTCACCTTTCCAGAAGAATG
1 AGTCCTGACCTTT-C--AA-AA-C
*
147297 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
147316 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AA-AA-C
*
147340 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
147359 AGTCTTGACCTTT
1 AGTCCTGACCTTT
147372 TTGGTAAGGT
Statistics
Matches: 96, Mismatches: 9, Indels: 23
0.75 0.07 0.18
Matches are distributed among these distances:
16 14 0.15
19 39 0.41
20 4 0.04
21 4 0.04
22 4 0.04
23 5 0.05
24 26 0.27
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 146738 -- 147237
CTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTTT
GGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGGAA
AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGACTT
TTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATACAATTGC
CATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 147372 -- 147871
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAA
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTAT
GGATCAGAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTC
CTGACCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGAT
Found at i:147307 original size:24 final size:21
Alignment explanation
Indices: 147252--147371 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 21
147242 CTGACCTTTC
147252 AGAGTCCTGACCTTT-CAA-A
1 AGAGTCCTGACCTTTCCAAGA
*
147271 AGAGTCCTCACCTTTCCAGAAGA
1 AGAGTCCTGACCTTTCC--AAGA
147294 ATGAGTCCTGACCTTT-CAAG-
1 A-GAGTCCTGACCTTTCCAAGA
* *
147314 ACAGTCTTGACCTTTCCAGAAGA
1 AGAGTCCTGACCTTTCC--AAGA
*
147337 ATCAGTCCTGACCTTT-CAAG-
1 A-GAGTCCTGACCTTTCCAAGA
* *
147357 ACAGTCTTGACCTTT
1 AGAGTCCTGACCTTT
147372 TTGGTAAGGT
Statistics
Matches: 85, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
19 39 0.46
20 4 0.05
21 6 0.07
22 5 0.06
23 5 0.06
24 26 0.31
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (21 bp):
AGAGTCCTGACCTTTCCAAGA
Left flanking sequence: Indices 146752 -- 147251
TTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTT
CTATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTC
CTGACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTT
AATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATA
CAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGT
CCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 147372 -- 147871
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAA
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTAT
GGATCAGAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTC
CTGACCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGAT
Found at i:147327 original size:43 final size:43
Alignment explanation
Indices: 147254--147574 Score: 339
Period size: 43 Copynumber: 7.7 Consensus size: 43
147244 GACCTTTCAG
* * * * *
147254 AGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
147297 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
*** *
147340 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
** *
147383 AGTCCTGACCTTGAAATACAGTCTTGA-----CCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
* * * *
147421 AGTCCTGATCTTTCAAGATAGTCTTGATCTTT-CA-AAAAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA--TC
* * *
147464 AGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
147505 AGTCCTGACCTTTCAAGACAGTCTTGA-----CCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
147543 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
147575 TTGGTAAGGT
Statistics
Matches: 231, Mismatches: 29, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
37 3 0.01
38 61 0.26
41 33 0.14
42 3 0.01
43 128 0.55
44 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 146754 -- 147253
GTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTTTGGATCCTGACTGTTCT
ATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCTAAGGAAAGTACTAATGGCATTT
TGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTG
CAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCT
GACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTTAA
TGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACA
ATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCC
TGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 147575 -- 148074
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAGA
GCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACCTT
TACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATGCA
TTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCAT
GGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAG
TACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAAT
Found at i:147444 original size:81 final size:81
Alignment explanation
Indices: 147297--147674 Score: 297
Period size: 81 Copynumber: 4.6 Consensus size: 81
147287 CAGAAGAATG
**
147297 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
**
147362 CTTGACCTTTTTGGTAAGGTC
61 CTTGACCTTTTTAATAAGGTC
* * *
147383 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGA
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
* ** *
147448 TCTTTCAAAAAAGGTC
66 CCTTTTTAATAAGGTC
* ** *
147464 AGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGACCTTTCAAGACAGT
** *
147527 CTTGACC---AGAAGAA--TC
61 CTTGACCTTTTTAATAAGGTC
** * * * **
147543 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTGTGAAAGACA
1 AGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGACCT-TTCAAGACA
*
147606 GTCTTGACCTTTTTGATAAGGTC
59 GTCTTGACCTTTTTAATAAGGTC
*
147629 AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
147675 TCAGATAGTC
Statistics
Matches: 233, Mismatches: 40, Indels: 43
0.74 0.13 0.14
Matches are distributed among these distances:
77 1 0.00
79 23 0.10
80 7 0.03
81 110 0.47
82 2 0.01
83 1 0.00
84 37 0.16
86 52 0.22
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (81 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTAATAAGGTC
Left flanking sequence: Indices 146797 -- 147296
CTTTTTGGATCCTGACTGTTCTATAATGAGTCTTGACCTTTCAAACAGAGTCCTGACCTTTCTCT
AAGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGT
GAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTCC
TGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTATGGTCAGCACTAATGGCATAC
AATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAG
TCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATG
Right flanking sequence: Indices 147675 -- 148174
TCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTT
TGGATCCTGACCTTTTTGGTATGGATCAGAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGAT
CCTGACTTTTCCATAATGAGTCCTGACCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTG
ATTCAGGTCAGACAAATCGTGAAAAATGCATTATTCACAAAATGAGATTTGGTCAGGGTCAGCAA
GAATGGCAAACAATTGCAATTGTCCATCATGGAAGCAAGAATGGCATACAATTCCACTTTTTGGT
ATGGAAAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAAT
GGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCC
Found at i:147496 original size:19 final size:19
Alignment explanation
Indices: 147472--147574 Score: 93
Period size: 19 Copynumber: 5.2 Consensus size: 19
147462 TCAGTACTGA
147472 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
147491 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
147515 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
** *
147534 --AGAAGAATCAGTCCTGACC
1 TTTCAAG-A-CAGTCTTGACC
147553 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
147572 TTT
1 TTT
147575 TTGGTAAGGT
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 40 0.60
20 2 0.03
21 3 0.04
23 1 0.01
24 17 0.25
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 146972 -- 147471
AGAATGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCATGAATTTTTGTAT
GGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGT
ACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAA
TGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGA
Right flanking sequence: Indices 147575 -- 148074
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAGA
GCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACCTT
TACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATGCA
TTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCAT
GGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAG
TACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAAT
Found at i:147604 original size:43 final size:43
Alignment explanation
Indices: 147557--147657 Score: 175
Period size: 43 Copynumber: 2.3 Consensus size: 43
147547 CTGACCTTTC
* *
147557 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
147600 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
147643 AAGACAGTCTTGACC
1 AAGACAGTCTTGACC
147658 AGAAGAATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 147057 -- 147556
AATTGCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAG
TCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTG
ATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 147658 -- 148157
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAGAGCATTGAATTGCAATTAG
TCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACCTTTACAGAAAGTCCTGTCCA
TCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATGCATTATTCACAAAATGAGAT
TTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCATGGAAGCAAGAATGGCATA
CAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTT
GTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
Found at i:147613 original size:19 final size:19
Alignment explanation
Indices: 147586--147656 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
147576 TGGTAAGGTT
*
147586 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
147605 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
147629 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
147648 AGTCTTGAC
1 AGTCCTGAC
147657 CAGAAGAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 147086 -- 147585
TTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTT
GTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCA
CCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 147657 -- 148156
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAGAGCATTGAATTGCAATTA
GTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACCTTTACAGAAAGTCCTGTCC
ATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATGCATTATTCACAAAATGAGA
TTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCATGGAAGCAAGAATGGCAT
ACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGT
TGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCA
Found at i:147637 original size:24 final size:24
Alignment explanation
Indices: 147561--147637 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
147551 CCTTTCAAGA
* *
147561 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
147585 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
147604 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
147628 CAGTCCTGAC
1 CAGTCCTGAC
147638 TTTGAAAGAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 147061 -- 147560
GCCATTGGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCAAGT
GAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCT
GACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAG
TCCTGACCTTTCAAAAGAGTCCTCACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
TTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 147638 -- 148137
TTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCA
GAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACC
TTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATG
CATTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATC
ATGGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTG
AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGT
Found at i:148046 original size:28 final size:28
Alignment explanation
Indices: 148006--148157 Score: 227
Period size: 28 Copynumber: 5.3 Consensus size: 28
147996 TGGTATGGAA
*
148006 AATGACATTTTGTTGT-ACAGTGAGTACT
1 AATGGCATTTTGTTGTCA-AGTGAGTACT
148034 AATGGCATTTTGTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTGTCAAGTGAGTACT
148062 AATGGCATACAATTTGTTGTCAAGTGAGTACT
1 AATGGCAT----TTTGTTGTCAAGTGAGTACT
148094 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTG-TTGTCAAGTGAGTACT
148122 AATGGCATTTTGTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTGTCAAGTGAGTACT
148150 AATGGCAT
1 AATGGCAT
148158 ACAATTGTCA
Statistics
Matches: 116, Mismatches: 1, Indels: 14
0.89 0.01 0.11
Matches are distributed among these distances:
27 4 0.03
28 80 0.69
29 5 0.04
32 27 0.23
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.38
Consensus pattern (28 bp):
AATGGCATTTTGTTGTCAAGTGAGTACT
Left flanking sequence: Indices 147506 -- 148005
GTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAA
GGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGAT
CAGAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGA
CCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAA
TGCATTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCA
TCATGGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAA
Right flanking sequence: Indices 148158 -- 148657
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAGAAATGAGTCCTGACCTTTCCATCACCTTTCCTTAAAAAAGAAAAA
AAAGAGTGATCTTATCTGAGATTAGCTCATACTTTGAAGAAGCACTCGCTTTTAAACTTGAAGGT
CATGTCACGTCCTTATTCAGGTCAGAACAAAGCCTTCTTGTCTGATCTTTTGTGAGCTCATACTT
TGCCTTAAGAAAGCACTCTTTTCAACTTGAAGGTCCTTATTCAGC
Found at i:148088 original size:60 final size:57
Alignment explanation
Indices: 148006--148157 Score: 229
Period size: 60 Copynumber: 2.6 Consensus size: 57
147996 TGGTATGGAA
*
148006 AATGACATTTTGTTGT-ACAGTGAGTACTAATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTGTCA-AGTGAGTACTAATGGCATTTTGTTTGTCAAGTGAGTACT
148062 AATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCAT----TTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTTGTCAAGTGAGTACT
148122 AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
1 AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
148158 ACAATTGTCA
Statistics
Matches: 88, Mismatches: 1, Indels: 13
0.86 0.01 0.13
Matches are distributed among these distances:
56 34 0.39
59 4 0.05
60 49 0.56
61 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.38
Consensus pattern (57 bp):
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 147506 -- 148005
GTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAA
GGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGAT
CAGAGCATTGAATTGCAATTAGTCCTCACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGA
CCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAA
TGCATTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCA
TCATGGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAA
Right flanking sequence: Indices 148158 -- 148657
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAGAAATGAGTCCTGACCTTTCCATCACCTTTCCTTAAAAAAGAAAAA
AAAGAGTGATCTTATCTGAGATTAGCTCATACTTTGAAGAAGCACTCGCTTTTAAACTTGAAGGT
CATGTCACGTCCTTATTCAGGTCAGAACAAAGCCTTCTTGTCTGATCTTTTGTGAGCTCATACTT
TGCCTTAAGAAAGCACTCTTTTCAACTTGAAGGTCCTTATTCAGC
Found at i:148275 original size:43 final size:43
Alignment explanation
Indices: 148227--148310 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
148217 CTGATCTTTC
* * * *
148227 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
148270 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
148311 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 147727 -- 148226
GTCTTGACCTTTTTGGATCCTGACCTTTTTGGTATGGATCAGAGCATTGAATTGCAATTAGTCCT
CACCTTTTTGGATCCTGACTTTTCCATAATGAGTCCTGACCTTTACAGAAAGTCCTGTCCATCAC
CGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAAAATGCATTATTCACAAAATGAGATTTGG
TCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCATGGAAGCAAGAATGGCATACAAT
TCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAGTACTAATGGCATTTTGTTGTCA
AGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 148311 -- 148810
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGG
AATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAA
TGAGTCCTGACCTTTCCATCACCTTTCCTTAAAAAAGAAAAAAAAGAGTGATCTTATCTGAGATT
AGCTCATACTTTGAAGAAGCACTCGCTTTTAAACTTGAAGGTCATGTCACGTCCTTATTCAGGTC
AGAACAAAGCCTTCTTGTCTGATCTTTTGTGAGCTCATACTTTGCCTTAAGAAAGCACTCTTTTC
AACTTGAAGGTCCTTATTCAGCTTATTAAGCATAAGCAAAGCCTTCTTTTTAATTTTTCATGAAG
GGAACTCATAAAGGTAACATAGTTCATACCATTTTGTCCTATATTACTCATACTTTGATTAAGCA
CACTCGCTTCGCTTTGGCTTTCAAAGTCATGAGCAAGATGAAATG
Found at i:148370 original size:19 final size:16
Alignment explanation
Indices: 148329--148359 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
148319 CATTCTCATT
148329 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
148345 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
148360 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 147829 -- 148328
GACCTTTACAGAAAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCGTGAAA
AATGCATTATTCACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTC
CATCATGGAAGCAAGAATGGCATACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTAC
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 148360 -- 148859
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAGAAATGAGTCCTGACCTTTCCATCACCTTTCCTTAAAAAAGAAAAAAAAGAGT
GATCTTATCTGAGATTAGCTCATACTTTGAAGAAGCACTCGCTTTTAAACTTGAAGGTCATGTCA
CGTCCTTATTCAGGTCAGAACAAAGCCTTCTTGTCTGATCTTTTGTGAGCTCATACTTTGCCTTA
AGAAAGCACTCTTTTCAACTTGAAGGTCCTTATTCAGCTTATTAAGCATAAGCAAAGCCTTCTTT
TTAATTTTTCATGAAGGGAACTCATAAAGGTAACATAGTTCATACCATTTTGTCCTATATTACTC
ATACTTTGATTAAGCACACTCGCTTCGCTTTGGCTTTCAAAGTCATGAGCAAGATGAAATGCAAA
GCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTGAC
Found at i:148426 original size:16 final size:16
Alignment explanation
Indices: 148405--148435 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
148395 CATTCTCATT
148405 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
148421 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
148436 AGAAATGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 147905 -- 148404
CACAAAATGAGATTTGGTCAGGGTCAGCAAGAATGGCAAACAATTGCAATTGTCCATCATGGAAG
CAAGAATGGCATACAATTCCACTTTTTGGTATGGAAAATGACATTTTGTTGTACAGTGAGTACTA
ATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTTGTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTG
TCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAG
ACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 148436 -- 148935
AGAAATGAGTCCTGACCTTTCCATCACCTTTCCTTAAAAAAGAAAAAAAAGAGTGATCTTATCTG
AGATTAGCTCATACTTTGAAGAAGCACTCGCTTTTAAACTTGAAGGTCATGTCACGTCCTTATTC
AGGTCAGAACAAAGCCTTCTTGTCTGATCTTTTGTGAGCTCATACTTTGCCTTAAGAAAGCACTC
TTTTCAACTTGAAGGTCCTTATTCAGCTTATTAAGCATAAGCAAAGCCTTCTTTTTAATTTTTCA
TGAAGGGAACTCATAAAGGTAACATAGTTCATACCATTTTGTCCTATATTACTCATACTTTGATT
AAGCACACTCGCTTCGCTTTGGCTTTCAAAGTCATGAGCAAGATGAAATGCAAAGCAAAGTCATG
TACGCTGACCTTGACTTTGAAAATGGCTCGTGACGTGACGTTCCCTTAAGCAATTTGAAGTTGCG
AGTGCTTTGACGAGAATGGATAGCTTCCTACGAGCCGATAACGGC
Found at i:156945 original size:28 final size:28
Alignment explanation
Indices: 156904--156959 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
156894 GTTGATGGAA
*
156904 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTGGTTTGTCAAGTGAGTACT
156932 AATGGCATTGGTTTGTCAAGTGAGTACT
1 AATGGCATTGGTTTGTCAAGTGAGTACT
156960 CACCATACCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.38
Consensus pattern (28 bp):
AATGGCATTGGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 156404 -- 156903
GAAAAGTTTCCAATATGAATATCCAGAAATGGGGGAATGGCAAATTGCTCCAGTGGGCTGTTCGG
CGTAATCGTAATCAACACTTTTTGCATCCCTGTATTTCCTCCAAATGACAAAGGAAAGAGCCGGT
TGGCTTGGTCCGACCAAGAAAGGCATGGGAGTTCCAGTGATCAAAGCACTCGCAAAGCATGTGAG
CTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTC
ATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCC
ATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATT
AGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 156960 -- 157459
CACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTCCATAATT
GCAATGAGATGCCATTCATGCTGACCATACAACCAATTGTATGCCATTAGTGCTGACCATATCAC
AAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGAC
AATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGTTGAAGCTTA
TGAAGGTCACGTCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCTGACGTGACGTGACGTGA
TGGACACTCGCAAATTGCGTCAGGGCTTTGCGAGTGCTTTGCTCGTTGTATCGAGAGTAGACAGT
AAACAACGAGCGTAGAGTGATCGTCTACACGAGCCTACAAGAGTCTACGAAACTCGCTGCTCTTA
GGAAGCTCGCTTTCTAAGCCACTGCACTGGCGTAGTGGTCGGCAT
Found at i:157063 original size:38 final size:38
Alignment explanation
Indices: 157021--157111 Score: 99
Period size: 32 Copynumber: 2.6 Consensus size: 38
157011 TAGTGTCCAT
*
157021 AATTGCAATGAGATGCCATTCA-TGCTGACCATA-CAACC
1 AATTGCAATGAGATGCCATT-AGTGCTGACCATATC-ACA
157059 AATTG---T---ATGCCATTAGTGCTGACCATATCACA
1 AATTGCAATGAGATGCCATTAGTGCTGACCATATCACA
157091 AATTGCAATGAGATGCCATTA
1 AATTGCAATGAGATGCCATTA
157112 TCCATCAACC
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
31 1 0.02
32 26 0.59
33 1 0.02
35 2 0.05
38 14 0.32
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (38 bp):
AATTGCAATGAGATGCCATTAGTGCTGACCATATCACA
Left flanking sequence: Indices 156521 -- 157020
GGAAAGAGCCGGTTGGCTTGGTCCGACCAAGAAAGGCATGGGAGTTCCAGTGATCAAAGCACTCG
CAAAGCATGTGAGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTG
ATGGACAATTGTCATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATG
GCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTAT
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATTAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTGGTTTGTCAAGTGAGTACTCACCATACCAAAACAA
TGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTCCAT
Right flanking sequence: Indices 157112 -- 157611
TCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCC
CTTCTTTCAGAAAGCACTCGCAACTTCAAATTGTTGAAGCTTATGAAGGTCACGTCAGAGCAAAG
CCCTCTTTTGAAGAGGGCTTTGCTCTGACGTGACGTGACGTGATGGACACTCGCAAATTGCGTCA
GGGCTTTGCGAGTGCTTTGCTCGTTGTATCGAGAGTAGACAGTAAACAACGAGCGTAGAGTGATC
GTCTACACGAGCCTACAAGAGTCTACGAAACTCGCTGCTCTTAGGAAGCTCGCTTTCTAAGCCAC
TGCACTGGCGTAGTGGTCGGCATTCAACCCATCATGCCTGACGACTATCACAACAGAAGAAGCTT
AAGACTAGAAACCCCCCTTCGAGTCTACTTTGCTTTGCCAGAAGCTTCGCTTACTCAAAGAGTCT
CTCGGCATTCTAGAAGCTTCGCCAGAAGCGACTAGTATCTCGAAT
Found at i:160481 original size:41 final size:41
Alignment explanation
Indices: 160420--160499 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
160410 AGTCCTGATC
* * *
160420 TTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTA
1 TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACTTA
*
160461 TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACT
1 TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACT
160500 CATTGTTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (41 bp):
TTTAAAGACAGTATTAACCTTTTTGATAAGGTGAGTACTTA
Left flanking sequence: Indices 159920 -- 160419
TAAATCGAACGAGACTCTTTCGGGTATTCAACATCCGTCTCTCTCTGTCAATCCAAGAAAGGTAT
AGATAAGGAGGGCGCCTAGATGTTCGCTGAACAGCAAGCAAGTGATCAATCGCAAAGCGAAGCAA
CGTCATGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGT
CAAGGTCAGTGCACAACTATAGGCAGAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAAC
ACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTG
TATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATC
Right flanking sequence: Indices 160500 -- 160999
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAG
TTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAGTGC
TGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTC
Found at i:160557 original size:28 final size:29
Alignment explanation
Indices: 160514--160637 Score: 184
Period size: 28 Copynumber: 4.3 Consensus size: 29
160504 GTTGATGGAA
160514 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
160542 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
160570 AATGGCATCTCATT-TTTGGTCAAGTGAGTACT
1 AATGGCAT-T--TTGTTT-GTCAAGTGAGTACT
160602 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
160630 AATGGCAT
1 AATGGCAT
160638 ACAATTGTCA
Statistics
Matches: 88, Mismatches: 0, Indels: 15
0.85 0.00 0.15
Matches are distributed among these distances:
28 54 0.61
29 8 0.09
30 1 0.01
31 4 0.05
32 21 0.24
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 160014 -- 160513
AACAGCAAGCAAGTGATCAATCGCAAAGCGAAGCAACGTCATGTCACGTCACGAGCAAAGCCCTA
CGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTATAGGCAGAGC
CAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGC
ACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTC
CTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGG
AAAATCAGTCCTGATCTTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGA
CAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 160638 -- 161137
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAGTGCTGATTCAG
ACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTT
CATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGC
ACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAG
Found at i:160603 original size:60 final size:61
Alignment explanation
Indices: 160519--160637 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 61
160509 TGGAAAATGG
*
160519 CATTTGTTTGTCAAGTGAGTACTAATGGCATTT-TGTTGTCAAGTGAGTACTAATGGCATCT
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGT-TTGTCAAGTGAGTACTAATGGCATCT
160580 CATTT-TTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
160638 ACAATTGTCA
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
60 50 0.89
61 6 0.11
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.39
Consensus pattern (61 bp):
CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATCT
Left flanking sequence: Indices 160019 -- 160518
CAAGCAAGTGATCAATCGCAAAGCGAAGCAACGTCATGTCACGTCACGAGCAAAGCCCTACGCTT
TGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAAGGTCAGTGCACAACTATAGGCAGAGCCAAAG
CGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAA
TGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGAC
CTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAAT
CAGTCCTGATCTTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTC
TTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGG
Right flanking sequence: Indices 160638 -- 161137
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAGTGCTGATTCAG
ACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTT
CATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGC
ACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAG
Found at i:160755 original size:43 final size:43
Alignment explanation
Indices: 160707--160790 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
160697 CTGATCTTTC
* * * *
160707 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
160750 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
160791 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 160207 -- 160706
GCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAG
TCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTT
GGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAA
GGAAAATCAGTCCTGATCTTTAAAGACAGTATTGACCTTTTTGGTAAGGTTAGTACTTATTTAAA
GACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 160791 -- 161290
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAATAAAGTCCTGACCTTTTCCTT
TCCATGAGCTAATGTCATTCAAAGTTGCGAGTGCTGATTCAGACTCACTCTGATAGACTATCAGA
CAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTTCATTCTTTTCACTAATGGCATAC
AATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATG
GTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCA
Found at i:160850 original size:19 final size:16
Alignment explanation
Indices: 160809--160839 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
160799 CATTCTCATT
160809 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
160825 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
160840 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 160309 -- 160808
GTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTATTGACC
TTTTTGGTAAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATT
GTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 160840 -- 161339
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAATAAAG
TCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAGTGCTGATTCAGACTCACT
CTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTTCATTCTT
TTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATG
GCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
Found at i:161168 original size:28 final size:28
Alignment explanation
Indices: 161127--161209 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
161117 TGAGTACTCA
* *
161127 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
161155 TGTTTGTACAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
161183 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
161210 ACAATTGCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.25, C:0.10, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 160627 -- 161126
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAG
TGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTG
TCATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 161210 -- 161709
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
Found at i:161371 original size:95 final size:98
Alignment explanation
Indices: 161193--161372 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
161183 TGTTTGTACA
* *
161193 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
161258 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
161292 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
161353 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
161373 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 160693 -- 161192
AGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGCGAGT
GCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGT
CATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 161373 -- 161872
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
Found at i:161402 original size:43 final size:43
Alignment explanation
Indices: 161355--161553 Score: 186
Period size: 43 Copynumber: 4.9 Consensus size: 43
161345 CTGACCTTTC
* *
161355 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
161398 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
161441 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * * * *
161474 CAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
161517 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
161554 TGACATACAA
Statistics
Matches: 124, Mismatches: 20, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 20 0.16
39 2 0.02
41 1 0.01
43 85 0.69
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 160855 -- 161354
TCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAATAAAGTCCTGACCTTTTCCT
TTCCATGAGCTAATGTCATTCAAAGTTGCGAGTGCTGATTCAGACTCACTCTGATAGACTATCAG
ACAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTTCATTCTTTTCACTAATGGCATA
CAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 161554 -- 162053
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:161411 original size:19 final size:19
Alignment explanation
Indices: 161384--161454 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
161374 TGGTCAGGTT
161384 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
161403 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
161427 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
161446 AGTCTTGAC
1 AGTCCTGAC
161455 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 160884 -- 161383
AGTCCTGACCTTTCAATAAAGTCCTGACCTTTTCCTTTCCATGAGCTAATGTCATTCAAAGTTGC
GAGTGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAA
TTGTCATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 161455 -- 161954
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
Found at i:161624 original size:16 final size:16
Alignment explanation
Indices: 161600--161630 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
161590 CATTCTCATT
161600 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
161616 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
161631 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 161100 -- 161599
GCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 161631 -- 162130
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
Found at i:161796 original size:43 final size:43
Alignment explanation
Indices: 161735--161862 Score: 195
Period size: 43 Copynumber: 3.0 Consensus size: 43
161725 TTCCATCAAA
* * * *
161735 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
161778 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
*
161821 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
161863 GAGTACTAAT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 4 0.05
43 75 0.95
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 161235 -- 161734
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 161863 -- 162362
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Found at i:161824 original size:24 final size:24
Alignment explanation
Indices: 161753--161862 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 24
161743 CCTTTCAAGA
* *
161753 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
161777 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
161796 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
161820 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
161839 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
161863 GAGTACTAAT
Statistics
Matches: 62, Mismatches: 14, Indels: 20
0.65 0.15 0.21
Matches are distributed among these distances:
19 17 0.27
20 5 0.08
21 8 0.13
22 9 0.15
23 6 0.10
24 17 0.27
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 161253 -- 161752
ACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 161863 -- 162362
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Found at i:162090 original size:43 final size:42
Alignment explanation
Indices: 162029--162198 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
162019 TTCCATCAAA
**
162029 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
162072 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* * *
162110 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
162148 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
162191 AGTACTGA
1 AGTCCTGA
162199 TGACATACAA
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.55
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 161529 -- 162028
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 162199 -- 162698
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACC
TTTCAGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGA
TGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTG
Found at i:162304 original size:19 final size:19
Alignment explanation
Indices: 162276--162351 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
162266 CTTCCATAAT
162276 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
162295 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
162318 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
162338 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
162352 TTGGTCAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 161776 -- 162275
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 162352 -- 162851
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAT
CAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAA
AAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGA
Found at i:162322 original size:24 final size:24
Alignment explanation
Indices: 162273--162337 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
162263 GTCCTTCCAT
162273 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
162294 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
162316 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
162338 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 161773 -- 162272
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 162338 -- 162837
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAG
TCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTT
Found at i:162367 original size:43 final size:43
Alignment explanation
Indices: 162275--162532 Score: 186
Period size: 43 Copynumber: 6.2 Consensus size: 43
162265 CCTTCCATAA
*** *
162275 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
*
162318 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
162361 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
162404 TCAGTCCTGA-CTTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
162442 TCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
162480 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* *
162523 TGAGTACTGA
1 TCAGTCCTGA
162533 TGACATACAA
Statistics
Matches: 172, Mismatches: 29, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
33 10 0.06
35 1 0.01
37 3 0.02
38 20 0.12
39 3 0.02
41 1 0.01
42 4 0.02
43 128 0.74
44 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 161775 -- 162274
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 162533 -- 163032
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAG
TCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGT
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGT
CCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGA
Found at i:162390 original size:19 final size:19
Alignment explanation
Indices: 162363--162427 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
162353 TGGTCAGGTT
162363 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
162382 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
162406 AGTCCTGACTTTGAAATAC
1 AGTCCTGACTTTGAAAGAC
162425 AGT
1 AGT
162428 ATTGACCAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 11 0.31
20 3 0.08
21 5 0.14
22 5 0.14
23 3 0.08
24 9 0.25
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 161863 -- 162362
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 162428 -- 162927
ATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAATCAAGTCCTCAC
CTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGT
CCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGA
Found at i:162409 original size:24 final size:24
Alignment explanation
Indices: 162338--162414 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
162328 CCTTTCAAGA
* * *
162338 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
162362 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
162381 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
162405 CAGTCCTGAC
1 CAGTCCTGAC
162415 TTTGAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
21 4 0.10
22 5 0.13
23 3 0.08
24 17 0.44
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 161838 -- 162337
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 162415 -- 162914
TTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCA
ATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGT
ACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTC
AAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGA
Found at i:162603 original size:16 final size:16
Alignment explanation
Indices: 162579--162609 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
162569 CATTCTCATT
162579 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
162595 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
162610 ATCAAGTCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 162079 -- 162578
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 162610 -- 163109
ATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGT
ACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTC
AAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCA
TAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATTTGTGTGAACACTAATGGCATAC
AATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGGCATACA
Found at i:162702 original size:28 final size:29
Alignment explanation
Indices: 162659--162778 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
162649 GTTGATGGAA
162659 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
162687 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
162715 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
162743 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
162771 AATGGCAT
1 AATGGCAT
162779 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 162159 -- 162658
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTG
AAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAATCA
AGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 162779 -- 163278
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CATTTGTGTGAACACTAATGGCATACAATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGG
CATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGG
TCAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGT
CAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTCTTTTGAA
Found at i:162896 original size:43 final size:43
Alignment explanation
Indices: 162848--162929 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
162838 CTGATCTTTC
* *
162848 AAGACAGTCTTGATCTTTTTG-GTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGAG-AAGGTGAGTCCTGACTGTGA
*
162891 AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTCCTGACT
162930 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 162348 -- 162847
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTT
CAATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 162930 -- 163429
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATTTGTGTGAACACTAATGG
CATACAATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGGCATACAATTTGTTGTATAGTC
AGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTGTCTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGT
CAGGAAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTG
AAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCT
CACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATG
Found at i:162991 original size:19 final size:16
Alignment explanation
Indices: 162950--162980 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
162940 CATTCTCATT
162950 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
162966 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
162981 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 162450 -- 162949
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCTTGGTATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 162981 -- 163480
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATTTGT
GTGAACACTAATGGCATACAATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGGCATACAA
TTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGAC
TGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTTGAAAGG
TCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACA
AATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAA
Found at i:163301 original size:24 final size:23
Alignment explanation
Indices: 163270--163336 Score: 88
Period size: 19 Copynumber: 3.0 Consensus size: 23
163260 AGGTGAAGAC
*
163270 TCTTTTGAAAGGTAAGGACTCAT
1 TCTTTTGAAAGGTCAGGACTCAT
163293 TCTTCTTGAAAGGTCAGGA--C--
1 TCTT-TTGAAAGGTCAGGACTCAT
163313 TCTTTTGAAAGGTCAGGACTCAT
1 TCTTTTGAAAGGTCAGGACTCAT
163336 T
1 T
163337 GCAATTGTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
19 14 0.37
20 4 0.11
21 1 0.03
22 1 0.03
23 5 0.13
24 13 0.34
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (23 bp):
TCTTTTGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 162770 -- 163269
TAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAA
GTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
GAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCC
TGACCTTTCCATTTGTGTGAACACTAATGGCATACAATTGCAACCTTTCCTTTCCATATTGGAAG
CAAGAATGGCATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTG
ACCTTCCGGTCAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATAC
CAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGAC
Right flanking sequence: Indices 163337 -- 163836
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTA
CTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
Found at i:163428 original size:28 final size:27
Alignment explanation
Indices: 163345--163471 Score: 145
Period size: 28 Copynumber: 4.6 Consensus size: 27
163335 TTGCAATTGT
163345 ATGCCATTAGTACTCACTTGACAACAA
1 ATGCCATTAGTACTCACTTGACAACAA
* *
163372 ATTG-TA-T-GTCTCTCACTTGACAACAAA
1 A-TGCCATTAGT-ACTCACTTGACAAC-AA
163399 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGAC-AACAA
163427 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-AC-AACAA
*
163455 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
163472 CATACCAAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
25 2 0.02
26 16 0.18
27 8 0.09
28 56 0.64
29 5 0.06
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.28
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTTGACAACAA
Left flanking sequence: Indices 162845 -- 163344
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCC
ATTTGTGTGAACACTAATGGCATACAATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGGC
ATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGT
CAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTC
AGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTT
GAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 163472 -- 163971
CATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATT
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGA
TTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAG
Found at i:163578 original size:16 final size:16
Alignment explanation
Indices: 163557--163587 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
163547 AGGACCCTTT
163557 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
163573 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
163588 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 163057 -- 163556
TGGCATACAATTGCAACCTTTCCTTTCCATATTGGAAGCAAGAATGGCATACAATTTGTTGTATA
GTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTGTCTTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTTGAAAGGTCAGGACTCTT
TTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGT
ACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 163588 -- 164087
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTGAGGACTTGATTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGG
ACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAA
ACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTA
Found at i:163656 original size:43 final size:43
Alignment explanation
Indices: 163608--163689 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
163598 ATTGAGGAAA
* *
163608 AGTCAGAACTCACCTT-CTCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTAC-CAAAAAGATCAAGACTGTCTTTCAC
*
163651 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
163690 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 163108 -- 163607
CAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAG
GACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGG
ACTCATTATGGAAAAGTCAGGAAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 163690 -- 164189
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGGTCAGGACTCTTTTGA
AAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGAC
AACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTAC
TCACTGTACAAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATA
CAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACT
Found at i:163782 original size:28 final size:28
Alignment explanation
Indices: 163759--163878 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
163749 TGACAATTGT
163759 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
163787 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
163815 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
163843 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
163871 ATGCCATT
1 ATGCCATT
163879 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 163259 -- 163758
AAGGTGAAGACTCTTTTGAAAGGTAAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 163879 -- 164378
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGGTCAGGACTC
TTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCA
CTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCAT
TAGTACTCACTGTACAAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTG
ACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCA
GGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTGAGGACTCTTTTG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACA
GGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
Found at i:163940 original size:19 final size:19
Alignment explanation
Indices: 163927--163981 Score: 110
Period size: 19 Copynumber: 2.9 Consensus size: 19
163917 GAGGACTTGA
163927 TTGAAAGGTCAGGACTCTT
1 TTGAAAGGTCAGGACTCTT
163946 TTGAAAGGTCAGGACTCTT
1 TTGAAAGGTCAGGACTCTT
163965 TTGAAAGGTCAGGACTC
1 TTGAAAGGTCAGGACTC
163982 ATTGCAATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (19 bp):
TTGAAAGGTCAGGACTCTT
Left flanking sequence: Indices 163427 -- 163926
ATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGA
CTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
TTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGA
CAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAAT
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTC
CATCAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGA
Right flanking sequence: Indices 163982 -- 164481
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTAGTACTCA
CTGTACAAACAAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAA
TTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAACAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTAC
TCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAAT
Found at i:164134 original size:28 final size:29
Alignment explanation
Indices: 164067--164134 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
164057 TACTTTCCAT
164067 ATGCCATTAGTACTCACTGTACAAACAAA
1 ATGCCATTAGTACTCACTGTACAAACAAA
164096 ATGCCATTAGTACTCACTGTACAAAC-AA
1 ATGCCATTAGTACTCACTGTACAAACAAA
*
164124 ATGTCATTAGT
1 ATGCCATTAGT
164135 GTTGACCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 12 0.32
29 26 0.68
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (29 bp):
ATGCCATTAGTACTCACTGTACAAACAAA
Left flanking sequence: Indices 163567 -- 164066
GGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAAT
GAGTACTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGGTCAGGACTCTTTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 164135 -- 164634
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAG
GTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTGAGGACTCT
TTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCA
TACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAC
AAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATT
AGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAATAGGTCAGGACTTGATTG
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTG
ACCATAAAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Found at i:164288 original size:16 final size:16
Alignment explanation
Indices: 164267--164297 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
164257 AGGACTCTTT
164267 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
164283 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
164298 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 163767 -- 164266
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTA
CTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACT
CTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAA
CAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATACAACAAATTGTA
TGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCATACCAAACAGGTGAGGACTCTTT
Right flanking sequence: Indices 164298 -- 164797
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTAGTAC
TCACCATACCAAAATAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTAC
TCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCAT
ACCAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTC
Found at i:164453 original size:28 final size:27
Alignment explanation
Indices: 164370--164496 Score: 136
Period size: 28 Copynumber: 4.6 Consensus size: 27
164360 TTGCAATTGT
164370 ATGCCATTAGTACTCACTTGACAACAA
1 ATGCCATTAGTACTCACTTGACAACAA
* *
164397 ATTG-TA-T-GTCTCTCACTTGACAACAAA
1 A-TGCCATTAGT-ACTCACTTGACAAC-AA
164424 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGAC-AACAA
*
164452 ATGTCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-AC-AACAA
*
164480 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
164497 CATACCAAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
25 2 0.02
26 16 0.18
27 8 0.09
28 56 0.64
29 5 0.06
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTTGACAACAA
Left flanking sequence: Indices 163870 -- 164369
AATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGG
TCAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCC
ATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCA
TTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 164497 -- 164996
CATACCAAAATAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAC
AGATGCCATTTTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTT
TGGTTGATGGATAATGGCATCTCCTTTTTTTTATGGTCAGCACTA
Found at i:164494 original size:56 final size:54
Alignment explanation
Indices: 164370--164496 Score: 154
Period size: 56 Copynumber: 2.3 Consensus size: 54
164360 TTGCAATTGT
*
164370 ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCACTCACTTGACAACAAA
164424 ATGCCATTAGTACTCACTTGACAAACAAA-TGTCATTAGT-ACTCAC-TGTACAA-ACAA
1 ATGCCATTAGTACTCACTTGAC-AACAAATTGT-A-T-GTCACTCACTTG-ACAACA-AA
*
164480 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
164497 CATACCAAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
54 25 0.38
55 10 0.15
56 28 0.43
57 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (54 bp):
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCACTCACTTGACAACAAA
Left flanking sequence: Indices 163870 -- 164369
AATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGGACTTGATTGAAAGG
TCAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCC
ATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCA
TTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 164497 -- 164996
CATACCAAAATAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAC
AGATGCCATTTTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTT
TGGTTGATGGATAATGGCATCTCCTTTTTTTTATGGTCAGCACTA
Found at i:164544 original size:16 final size:16
Alignment explanation
Indices: 164523--164553 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
164513 AGGACTTGAT
164523 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
164539 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
164554 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 164023 -- 164522
GTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTA
CAAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATACAACAAAT
TGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAA
GGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAAC
AAATGTCATTAGTACTCACCATACCAAAATAGGTCAGGACTTGAT
Right flanking sequence: Indices 164554 -- 165053
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATAAAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCATACCAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTA
TACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAA
TGAAATTTTGGTTGATGGATAATGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAAT
TCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGT
Found at i:164676 original size:64 final size:60
Alignment explanation
Indices: 164597--164770 Score: 251
Period size: 59 Copynumber: 2.9 Consensus size: 60
164587 CTGACCATAA
164597 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTC
1 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGAC--TTTT--AAGGTC
* * * * **
164661 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGAC-TTTCCGGTC
1 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTAAGGTC
164720 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACT
1 AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACT
164771 CATTGCAATT
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
59 50 0.51
61 3 0.03
64 46 0.46
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (60 bp):
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTAAGGTC
Left flanking sequence: Indices 164097 -- 164596
TGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCT
TCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTAT
GTCATCAGTACTCACCATACCAAACAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCAT
TAGTACTCACCATACCAAAATAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATAA
Right flanking sequence: Indices 164771 -- 165270
CATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCC
ATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAA
TGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCAC
TAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TCTCATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGAAAAAT
Found at i:164865 original size:28 final size:28
Alignment explanation
Indices: 164783--164855 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
164773 TTGCAATTGT
164783 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
164811 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
164839 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
164856 CATACCAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 164283 -- 164782
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAA
GGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAAC
AAATGTCATTAGTACTCACCATACCAAAATAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATAAAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 164856 -- 165355
CATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATT
AGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAATGGCATCTCCTTTTTTTTAT
GGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTAT
GGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGA
GTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGT
Found at i:165061 original size:29 final size:29
Alignment explanation
Indices: 165017--165128 Score: 120
Period size: 29 Copynumber: 3.8 Consensus size: 29
165007 ATTCCAATTG
* *
165017 GGTATGGTGAGCACTAATGGCATTTGTTT
1 GGTATAGTGAGTACTAATGGCATTTGTTT
* *
165046 GGTATGGTGAGTACTAATGACATTTGTTT
1 GGTATAGTGAGTACTAATGGCATTTGTTT
* *
165075 -GTACAGTGAGTACTAATGGCATCTCATTTTT
1 GGTATAGTGAGTACTAATGGCAT-T--TGTTT
165106 GGTCA-AGTGAGTACTAATGGCAT
1 GGT-ATAGTGAGTACTAATGGCAT
165129 ACAATTGCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
28 19 0.26
29 28 0.39
31 4 0.06
32 20 0.28
33 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.37
Consensus pattern (29 bp):
GGTATAGTGAGTACTAATGGCATTTGTTT
Left flanking sequence: Indices 164517 -- 165016
CTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGAC
TGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACT
TTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGC
AATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCA
AGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAATGGCAT
CTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTG
Right flanking sequence: Indices 165129 -- 165628
ACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
TTCCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
TGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAG
AAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTA
Found at i:165165 original size:19 final size:19
Alignment explanation
Indices: 165141--165215 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
165131 AATTGCAATG
165141 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
165160 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
165184 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
165203 AGTCTTGACCTTT
1 AGTCCTGACCTTT
165216 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 164641 -- 165140
GAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTC
AGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACT
CATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCC
ATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAA
TGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCAC
TAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TCTCATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 165216 -- 165715
TTGGTAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGAAAAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGA
TGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATG
GCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAAT
TGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAG
AAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
Found at i:165185 original size:43 final size:43
Alignment explanation
Indices: 165137--165303 Score: 167
Period size: 43 Copynumber: 3.8 Consensus size: 43
165127 ATACAATTGC
*
165137 AATGAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
165180 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * * * * * *
165224 -GTGAGTACTGATGACATACAA-ATGAGTCTTGACCTTTCCAGAAA
1 AATGAGTCCTGA--CCTTTCAAGA-CAGTCTTGACCTTTCAAGAAG
*
165268 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
165304 TTGGTAAGGT
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
43 63 0.65
44 7 0.07
45 27 0.28
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 164637 -- 165136
AGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACA
GGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAA
GACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATT
TTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGG
ATAATGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGA
GCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 165304 -- 165803
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAA
AAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATA
ATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCATTT
Found at i:165187 original size:24 final size:24
Alignment explanation
Indices: 165137--165201 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
165127 ATACAATTGC
165137 AATGAGTCCTGACCTTTC---AAG
1 AATGAGTCCTGACCTTTCAAGAAG
*
165158 -A-CAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
165180 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
165202 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 164637 -- 165136
AGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACA
GGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAA
GACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATT
TTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGG
ATAATGGCATCTCCTTTTTTTTATGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGA
GCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 165202 -- 165701
CAGTCTTGACCTTTTTGGTAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGAA
AAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGA
GTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAA
GTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTC
Found at i:165285 original size:88 final size:88
Alignment explanation
Indices: 165160--165322 Score: 272
Period size: 88 Copynumber: 1.9 Consensus size: 88
165150 CTTTCAAGAC
* *
165160 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
165225 TGAGTACTGATGACATACAAATG
66 TCAGTACTGATGACATACAAATG
* *
165248 AGTCTTGACCTTTCCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
165313 TCAGTCCTGA
66 TCAGTACTGA
165323 CTGTGAAATA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (88 bp):
AGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTACTGATGACATACAAATG
Left flanking sequence: Indices 164660 -- 165159
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTTTCCGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTGTATGCCAT
TAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCA
CCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCAT
TAGTGCTGACCATACCAAAATCAATGAAATTTTGGTTGATGGATAATGGCATCTCCTTTTTTTTA
TGGTCAGCACTAATGGCATACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTA
TGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTG
AGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAC
Right flanking sequence: Indices 165323 -- 165822
CTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
AAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAA
GAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATCCGTCA
Done.