Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 4 of 20
Found at i:95913 original size:28 final size:28
Alignment explanation
Indices: 95890--96071 Score: 316
Period size: 28 Copynumber: 6.5 Consensus size: 28
95880 TGACAATTGT
95890 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
95918 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
95946 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
95974 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
96002 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
96030 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAACAA
96058 ATGCCATTAGTACT
1 ATGCCATTAGTACT
96072 TTCCATATGC
Statistics
Matches: 151, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.02
28 143 0.95
29 5 0.03
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 95390 -- 95889
TGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCA
GGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 96072 -- 96571
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATT
TGTTGTATGCCATTAGTGTTCACAAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGT
TCCCTTCTTGTCTGATAGTGAATTTTGTCTTGAGAAGCCCTACGCTTTGCGAGTGCGTGCTTTGT
GCAAAGCCCTACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATCAATTGACGTAGGGGGAAGTTT
CCAAAATTAGCTATGTATTCAGCTGGCTACGGACTCGGCTAACGAGAAAGGCGGCTAGAAATGGT
TATCTAGACCGGAGGCACATCGGCGGCTAACTCGCCCATGTATGGTTTACTGTCCCTCCCTTCGG
TACGGACGCATCCAATGCCGGATGGATTTTCTTCAAGCGATGAAC
Found at i:96357 original size:30 final size:31
Alignment explanation
Indices: 96301--96362 Score: 90
Period size: 34 Copynumber: 1.9 Consensus size: 31
96291 TTGTCTTGAG
96301 AAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCA
1 AAGCCCTACGCTTTGCGA--G-GTGCTTTGTGCA
96335 AAGCCCTACGCTTTGCGA-GTGCTTTGTG
1 AAGCCCTACGCTTTGCGAGGTGCTTTGTG
96363 GGCTTTGCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 10 0.36
34 18 0.64
ACGTcount: A:0.15, C:0.26, G:0.29, T:0.31
Consensus pattern (31 bp):
AAGCCCTACGCTTTGCGAGGTGCTTTGTGCA
Left flanking sequence: Indices 95801 -- 96300
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGA
AAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAA
ATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAAT
GGCATACAATTTGTTGTATGCCATTAGTGTTCACAAAAAGAATGAAGATCAATGACAATTGTCCA
TCAATATGAGTTCCCTTCTTGTCTGATAGTGAATTTTGTCTTGAG
Right flanking sequence: Indices 96363 -- 96862
GGCTTTGCTCATCAATTGACGTAGGGGGAAGTTTCCAAAATTAGCTATGTATTCAGCTGGCTACG
GACTCGGCTAACGAGAAAGGCGGCTAGAAATGGTTATCTAGACCGGAGGCACATCGGCGGCTAAC
TCGCCCATGTATGGTTTACTGTCCCTCCCTTCGGTACGGACGCATCCAATGCCGGATGGATTTTC
TTCAAGCGATGAACTTCCCTTTCCCAAGTCCTATGTTCGATAGATGCGTCAATCTTTCTTTCAGA
ACCTCCGTTTCGTCGTTATGACTCCAATCCGTGTCTGGTCGGTCCACTGAATGAACGACTTGCCT
TGTTTTGATCGATGGTTCACCGCCCGGGCGAAAAAACCAACGAATTCCAGGGGCGGCCCGCGGTC
GAGAGCATCAGCCCTCTCCAACTCGAGTTGTTATCCCTCCCCCGACGGTGGAACCAGATGAGGTT
TTGGAGACGGGGGATCTTTTGCTTTTTCCCAGGACTTGAGTAGAA
Found at i:97709 original size:18 final size:17
Alignment explanation
Indices: 97675--97713 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
97665 CCGGTGGCGG
97675 GTGCTCCACCATGGATC
1 GTGCTCCACCATGGATC
* *
97692 GTGCTTCCACTATTGATC
1 GTGC-TCCACCATGGATC
97710 GTGC
1 GTGC
97714 ATCGATCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (17 bp):
GTGCTCCACCATGGATC
Left flanking sequence: Indices 97175 -- 97674
AAGCTATTCATGTAGAGGTGGGATGGAGAGAAGGTGGAACTAGCACGGGCAAGAATCACCGGGAG
AGGGTTTTTCGAGAGTCTTTCCCCCTCCCCCGGTCGAGGGGCTCCGCCCAAGATATTGAAGAACC
TGTCCCAGACCCTCTCTCTAGTAGGTTACTCCTTTTCTAGTTAGACCTTCTGCTAATCATCCCCT
AATGCCTCCTTTTCCTCTAAACCAGATGCCGAATCGGGGGAAGAAGCAAAATCAGAAGAAGTAGG
ACTATCTATCCAACATAGACTCCTATAATTGAGGGATAGATAGTCTTTTGGATAGGCGATGCTTG
AAGTTCATCTGTTTCAACGTTCATTAGCCGGGCGGGGATGGAACAAAATCATTCTTTGTCGAAGT
CCTTTTAATGACGGGAAGAAAACTGGATTGGGCGGTACGAGAAGAAGAGGTTCCACTGCGGATGC
TGCCGACCGAACAACCACTCTGGAGTATCCTTTCCCCGGTGGCGG
Right flanking sequence: Indices 97714 -- 98213
ATCGATCGAATGACCAACATCAGATGAAAAGGGAGGCCTGGTTAGGGGCATTCGGAGGCCCCGGA
TTCGGAAGGCAGGAGGAGTGAAAGCTTCGGGCGGGGGATGCATATATTAGCATTAGCAGGTTCCT
CCGAAGGTTCTGAAATGGATCAAATGAGGTTCCTATCCCACATATATCAAGAGGTTTGAAACACA
AAGATGACACTAACAAAGGAACACAGACACCAATCAGACAAATTACACCATGAAATCAAAGAGAA
AAAGGTTCCTATCCCACATAATGAGCAGGTTCCTCGTTCTGAAATTGATCAAATGTTGGTAACTC
GACCAGGAAGATAGGCGGCCCTGCCGGAAGTAGCAAGTCCAAAAGCGTACGATCCGCTTTTGACC
TTTATCGCGCCTGAACCTTGCCTGATGATCGCGATCATCCCTCATCACTTCCACCAGCGTATTCC
ATTCCAGCAGACGAGACGATCGATCTTCTTCCTTGAACCACTAGG
Found at i:100024 original size:20 final size:20
Alignment explanation
Indices: 99994--100053 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 20
99984 CGAACACGAG
99994 ATGGAAAGCGAGCGTATGGAC
1 ATGG-AAGCGAGCGTATGGAC
* *
100015 ATGGAAGCGAGTGCATAGG-C
1 ATGGAAGCGAGCGTAT-GGAC
100035 A--GAAGCGAGCGTATGGAC
1 ATGGAAGCGAGCGTATGGAC
100053 A
1 A
100054 GGTCATCGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 2 0.06
18 13 0.39
20 12 0.36
21 6 0.18
ACGTcount: A:0.33, C:0.15, G:0.38, T:0.13
Consensus pattern (20 bp):
ATGGAAGCGAGCGTATGGAC
Left flanking sequence: Indices 99494 -- 99993
TCATTAGGCAGGTCATGGATTGAGGAAGAGGCGGTAATGAGTCTCTCTTTGTTAGTAGTCTTTTT
GAGAGGTACCGTTAGGCTGATCTCGACCTGGATATGTCTTGTCTCTTTGGCCCCTGAGTCCAAAT
TTGTCAATCTCCGTTTTCATTAGTGAAACTGGCAAAAGGGAGGAAGTTCAGGCCGAAGCGTGACT
CGATCAGTCAAAGGAGCGTATGGCCCCTCGAGCAAGGGGGTACGAGCGTCATTCTCGAGCGTCAC
GGATACGAGCGGCAGTACTGAATCGATCAAATAGGACGAGCGCCTGAATGAGCTTCTGAGTCGAG
CATCAAGGCCGATACGAGTGCTTGACAGAATCGAGCATGAAGTAGGAGCTCCTGAATCAGTAGGA
GCTCGAGTCAAGGGTACCCTCGAGCAGGGTACGAGCGTAGTACTTGATCCTTGGATCGTGAAAAG
TGTACGTCATCCGATCACTCGAGCACTGGACGATACGAACACGAG
Right flanking sequence: Indices 100054 -- 100553
GGTCATCGATAACATAGCCTTGAGCGAGCTGTCTTGCTTGCCGGCTTGATTGAGAATCTTTCGCT
TATCAGTATACCTGATAAGCTCACATTGGCTTGTAGCCTTTCTGTTGAGAACCCGTCAAGCACGG
AATTGGTCATTCGTTGAGTAGTGGTGGCATTCACCCCAGCCGGAAAAGTGCTTTTAGGTTCTTAG
TAGCAGCCGGCGACCTTTTCTTCTTTTACTTCACATAGCTTTTCGTTTCCTTGATAGCTGGAAGT
TCTCCAAAAGTATGAAAAGCTGGAGGACTTTGTACCATCCATTCCGGTGTGGTTGGATTCCGTTC
AACAGCCCAAGGACTTGGAGCACATCTTTTGTTGTTTCCACTGCTTGAAGTGATTGTGACGACCA
CGAAGAAACGACGAATCCCAACTACGGATATATAAGGGCCAAAACTGCTAAGGGCATTCCATCCT
GCGTAAGCATCCGGATAATCTGGAATGCGACGTGGCATACCCGAA
Found at i:106885 original size:28 final size:28
Alignment explanation
Indices: 106844--106926 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
106834 TGAGTACTCA
* *
106844 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
*
106872 TGTTTGTACAGTGAGTACTCATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
106900 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
106927 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 106344 -- 106843
AGACGTGATCTTAGATCGAACCGCGGGGTACGGAATGTTCTCGTTTATGGATGGATATTCTGGTT
ATAACCAGAGCCAAATAGCCCCTGAAGAGCCAATCCATACCACGTTCATAACCCCTCTGGGTCTA
TCTTGTTTTAATGTGATGCCGTTTGGATTCAAGAATGCAGGAGCCACCTACATCAGCGGTGCTCA
CCCTCCCTGTTCAAGCTATCATGGTCCCAAGCTCTAGGAATGGAGTCGGAGATCAATCCTCAGGC
GGTATACCTTTGACTTGTTAGTCTCGTTTGATTGATTCGTCAACCAAAAGCACTCGCAAAGCGAA
GCTTCAGGGAAAAGCGAACAAAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 106927 -- 107426
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
Found at i:107088 original size:95 final size:98
Alignment explanation
Indices: 106910--107089 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
106900 TGTTTGTACA
* *
106910 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
106975 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
107009 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
107070 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
107090 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 106410 -- 106909
TAACCAGAGCCAAATAGCCCCTGAAGAGCCAATCCATACCACGTTCATAACCCCTCTGGGTCTAT
CTTGTTTTAATGTGATGCCGTTTGGATTCAAGAATGCAGGAGCCACCTACATCAGCGGTGCTCAC
CCTCCCTGTTCAAGCTATCATGGTCCCAAGCTCTAGGAATGGAGTCGGAGATCAATCCTCAGGCG
GTATACCTTTGACTTGTTAGTCTCGTTTGATTGATTCGTCAACCAAAAGCACTCGCAAAGCGAAG
CTTCAGGGAAAAGCGAACAAAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACT
AATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACA
Right flanking sequence: Indices 107090 -- 107589
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
Found at i:107119 original size:43 final size:43
Alignment explanation
Indices: 107072--107270 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 43
107062 CTGACCTTTC
* * *
107072 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
107115 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* * *
107158 AATACAGTCTTGACC------AGAAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGACTGTGA
* * * *
107191 CAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
107234 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
107271 TGACATACAA
Statistics
Matches: 125, Mismatches: 19, Indels: 24
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 4 0.03
38 20 0.16
39 3 0.02
41 1 0.01
43 85 0.68
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 106572 -- 107071
CTAGGAATGGAGTCGGAGATCAATCCTCAGGCGGTATACCTTTGACTTGTTAGTCTCGTTTGATT
GATTCGTCAACCAAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAACAAAGAGTGCTGATT
CAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATA
CAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 107271 -- 107770
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAAAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:107128 original size:19 final size:19
Alignment explanation
Indices: 107101--107171 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
107091 TGGTCAGGTT
107101 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
107120 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
107144 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
107163 AGTCTTGAC
1 AGTCCTGAC
107172 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 106601 -- 107100
GGCGGTATACCTTTGACTTGTTAGTCTCGTTTGATTGATTCGTCAACCAAAAGCACTCGCAAAGC
GAAGCTTCAGGGAAAAGCGAACAAAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAG
CACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 107172 -- 107671
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTGTGAAAGAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAG
Found at i:107384 original size:19 final size:19
Alignment explanation
Indices: 107317--107389 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
107307 CATTCTCATT
107317 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
107333 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
107357 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
107376 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
107390 CATTTTTGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.26
17 1 0.02
19 14 0.30
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.26
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 106817 -- 107316
GCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 107390 -- 107889
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAAAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
Found at i:107518 original size:43 final size:43
Alignment explanation
Indices: 107466--107579 Score: 192
Period size: 43 Copynumber: 2.7 Consensus size: 43
107456 CTGACCTTTC
* *
107466 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
107509 AAGAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
107552 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
107580 GAGTACTAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 106966 -- 107465
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTC
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 107580 -- 108079
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCC
Found at i:107546 original size:24 final size:24
Alignment explanation
Indices: 107514--107579 Score: 79
Period size: 19 Copynumber: 3.0 Consensus size: 24
107504 TGTGAAAGAA
107514 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCTTGACCTTTTTGATAAGGTC
* *
107538 AGTCCTGA-C--TTTGA-AA-GAC
1 AGTCTTGACCTTTTTGATAAGGTC
107557 AGTCTTGACCTTTTTGATAAGGT
1 AGTCTTGACCTTTTTGATAAGGT
107580 GAGTACTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
19 9 0.27
20 3 0.09
21 5 0.15
22 5 0.15
23 3 0.09
24 8 0.24
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (24 bp):
AGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 107014 -- 107513
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAA
Right flanking sequence: Indices 107580 -- 108079
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCC
Found at i:107565 original size:19 final size:19
Alignment explanation
Indices: 107495--107565 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
107485 TGGTAAGGTT
* *
107495 AGTCCTGACTGTGAAAGAA
1 AGTCCTGACTTTGAAAGAC
* *
107514 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
107538 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
107557 AGTCTTGAC
1 AGTCCTGAC
107566 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 5 0.12
22 4 0.10
23 3 0.08
24 8 0.20
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 106995 -- 107494
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 107566 -- 108065
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:107807 original size:43 final size:42
Alignment explanation
Indices: 107746--107915 Score: 144
Period size: 43 Copynumber: 4.2 Consensus size: 42
107736 TTCCATCAAA
*
107746 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
107789 AGTCCTGACTTTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
107827 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
107865 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
107908 AGTACTGA
1 AGTCCTGA
107916 TGACATACAA
Statistics
Matches: 99, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 4 0.04
43 54 0.55
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 107246 -- 107745
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 107916 -- 108415
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTA
CTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTA
Found at i:108021 original size:19 final size:19
Alignment explanation
Indices: 107993--108063 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
107983 CTTCCATAAT
107993 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
108012 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
108030 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
108050 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
108064 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 107493 -- 107992
TTAGTCCTGACTGTGAAAGAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 108064 -- 108563
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTGT
ACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGA
GACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAA
AAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCC
TGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTG
Found at i:108096 original size:43 final size:43
Alignment explanation
Indices: 108049--108244 Score: 198
Period size: 43 Copynumber: 4.8 Consensus size: 43
108039 ACCTTTCAAG
*
108049 ACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
*
108092 ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
108135 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* * *
108170 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * *
108211 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
108245 TGACATACAA
Statistics
Matches: 123, Mismatches: 18, Indels: 24
0.75 0.11 0.15
Matches are distributed among these distances:
33 9 0.07
35 4 0.03
37 3 0.02
38 20 0.16
39 3 0.02
41 3 0.02
43 81 0.66
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 107549 -- 108048
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 108245 -- 108744
TGACATACAAATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAA
TGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAG
TCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCT
Found at i:108102 original size:19 final size:19
Alignment explanation
Indices: 108075--108145 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
108065 TGGTAAGGTT
108075 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
* *
108094 AGTCTTGACCTTTTTGATAAGGT-C
1 AGTCCTGA-C--TGTGA-AA--TAC
108118 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
*
108137 AGTCTTGAC
1 AGTCCTGAC
108146 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.03
19 16 0.40
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 8 0.20
25 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTGTGAAATAC
Left flanking sequence: Indices 107575 -- 108074
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 108146 -- 108645
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGA
AAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGT
CAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAA
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
CTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
Found at i:108215 original size:119 final size:121
Alignment explanation
Indices: 108011--108244 Score: 382
Period size: 119 Copynumber: 1.9 Consensus size: 121
108001 ACCTTTCAAG
108011 ACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
1 ACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
* *
108076 GTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
63 GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAT
* *
108135 ACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
1 ACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
*
108198 CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
66 CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
108245 TGACATACAA
Statistics
Matches: 105, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
119 74 0.70
120 2 0.02
124 29 0.28
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (121 bp):
ACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAT
Left flanking sequence: Indices 107511 -- 108010
GAAAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
CAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 108245 -- 108744
TGACATACAAATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAA
TGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAG
TCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCT
Found at i:108331 original size:28 final size:28
Alignment explanation
Indices: 108299--108425 Score: 165
Period size: 28 Copynumber: 4.6 Consensus size: 28
108289 TTTTGGTATG
*
108299 GTGAGTACTAATGACATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
108327 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
108355 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
* *
108383 GTGAG-A-GACAT-ACAATTTG-TTGTCAA
1 GTGAGTACTA-ATGGC-ATTTGTTTGTCAA
108409 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
108426 ACAATTGCAA
Statistics
Matches: 88, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
26 14 0.16
27 13 0.15
28 60 0.68
29 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 107799 -- 108298
TTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCT
GACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATG
Right flanking sequence: Indices 108426 -- 108925
ACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCT
TTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACATA
AATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCA
CTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGT
Found at i:108519 original size:16 final size:16
Alignment explanation
Indices: 108498--108528 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
108488 CATTCTCATT
108498 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
108514 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
108529 AAAGAGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 107998 -- 108497
CTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
AGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 108529 -- 109028
AAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAA
TACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTTGGATCCTGAC
CTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACA
ATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCT
TTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGC
ATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTG
AGAGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAAT
Found at i:108536 original size:19 final size:19
Alignment explanation
Indices: 108498--108588 Score: 71
Period size: 19 Copynumber: 4.7 Consensus size: 19
108488 CATTCTCATT
108498 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
108514 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
* *
108533 AGTCTTCACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
108557 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
108576 AGTCTTGACCTTT
1 AGTCCTGACCTTT
108589 TTGGTAAGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 14 0.23
19 26 0.43
20 1 0.02
21 2 0.03
22 2 0.03
23 2 0.03
24 13 0.22
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 107998 -- 108497
CTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
AGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 108589 -- 109088
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTTGGATC
CTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGC
ATACAATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATT
GTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTA
ATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTC
AAGTGAGAGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCT
Found at i:108567 original size:24 final size:22
Alignment explanation
Indices: 108512--108574 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
108502 CTGACCTTTC
108512 AGAGTCCTGACCTTTC---AAA
1 AGAGTCCTGACCTTTCAAGAAA
* *
108531 AGAGTCTTCACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAA-A
108554 ATGAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
108575 CAGTCTTGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 14 0.40
22 2 0.06
23 2 0.06
24 17 0.49
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (22 bp):
AGAGTCCTGACCTTTCAAGAAA
Left flanking sequence: Indices 108012 -- 108511
CAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTG
TTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTAT
GGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 108575 -- 109074
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAA
AAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATG
AATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATG
GCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAAT
GGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATT
GCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAA
Found at i:108604 original size:43 final size:43
Alignment explanation
Indices: 108557--108693 Score: 195
Period size: 43 Copynumber: 3.2 Consensus size: 43
108547 AAGAAGAATG
* * *
108557 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
108600 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
* * *
108643 AGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
*
108686 AGTACTGA
1 AGTCCTGA
108694 TGACATACAA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.05
43 82 0.95
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 108057 -- 108556
GACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTC
CTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGAC
CTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATG
Right flanking sequence: Indices 108694 -- 109193
TGACATACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAA
CTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACATAAATGGTCA
GGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTT
GATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGG
AAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGAGTACTAAT
GGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACC
TTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAG
TACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGT
Found at i:108627 original size:19 final size:19
Alignment explanation
Indices: 108600--108664 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
108590 TGGTAAGGTT
108600 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
108619 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
108643 AGTCCTGACTTTGAAATAC
1 AGTCCTGACTTTGAAAGAC
108662 AGT
1 AGT
108665 ATTGACCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 11 0.31
20 3 0.08
21 5 0.14
22 5 0.14
23 3 0.08
24 9 0.25
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 108100 -- 108599
GACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAAAGTCCTCACCTGTTTTGG
TATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 108665 -- 109164
ATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTTGGATCCTGACCTTTCC
AGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACA
ATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTG
TTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTG
TTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGAC
ATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAA
GAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTG
TACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGT
Found at i:108646 original size:24 final size:24
Alignment explanation
Indices: 108575--108684 Score: 80
Period size: 24 Copynumber: 5.0 Consensus size: 24
108565 CCTTTCAAGA
*
108575 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
108599 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
108618 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
*
108642 CAGTCCTGA-C--TTTGA-AA--T
1 CAGTCTTGACCTTTTTGATAAGGT
*
108660 ACAGTATTGACCTTTTTGATAAGGT
1 -CAGTCTTGACCTTTTTGATAAGGT
108685 GAGTACTGAT
Statistics
Matches: 64, Mismatches: 10, Indels: 23
0.66 0.10 0.24
Matches are distributed among these distances:
18 1 0.02
19 15 0.23
20 6 0.09
21 9 0.14
22 10 0.16
23 6 0.09
24 16 0.25
25 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 108075 -- 108574
AGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAGAAAGTCCTCACCTGTTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATT
TGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGT
ATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAA
AAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 108685 -- 109184
GAGTACTGATGACATACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCTTTTCC
TTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACAT
AAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGC
ACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTG
AGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAA
GTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCA
TATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATG
Found at i:109151 original size:48 final size:48
Alignment explanation
Indices: 109099--109192 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
109089 TGGTATGGTG
*
109099 AGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGACATTGGTTTGCACAGTGAGTACTAATGGCATATGGAA
* *
109147 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGG
1 AGTACTAATGACATTGGTTTGCACAGTGAGTACTAATGGCATATGG
109193 TCAAGTGAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.32
Consensus pattern (48 bp):
AGTACTAATGACATTGGTTTGCACAGTGAGTACTAATGGCATATGGAA
Left flanking sequence: Indices 108599 -- 109098
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAG
TATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTTGGATCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGAC
AATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTT
GTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGA
CATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTG
Right flanking sequence: Indices 109193 -- 109692
TCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGACCTTT
CAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGA
CCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGA
AAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
Found at i:109205 original size:25 final size:25
Alignment explanation
Indices: 109123--109214 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
109113 TGGTTTGTAC
109123 AGTGAGTACTAATGGCATATGG--A
1 AGTGAGTACTAATGGCATATGGTCA
* *
109146 A---AGTACTAATGGCATTTGTTTGCA
1 AGTGAGTACTAATGGCATATG-GT-CA
109170 CAGTGAGTACTAATGGCATATGGTCA
1 -AGTGAGTACTAATGGCATATGGTCA
109196 AGTGAGTACTAATGGCATA
1 AGTGAGTACTAATGGCATA
109215 CAATTGCAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
20 16 0.28
23 1 0.02
24 1 0.02
25 20 0.35
26 2 0.04
27 1 0.02
28 16 0.28
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (25 bp):
AGTGAGTACTAATGGCATATGGTCA
Left flanking sequence: Indices 108623 -- 109122
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTTGGATCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTT
CCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACATAAA
TGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACT
CATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGC
ATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGAGT
ACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTC
CTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTAC
Right flanking sequence: Indices 109215 -- 109714
CAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTT
GGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTT
TCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:109267 original size:19 final size:19
Alignment explanation
Indices: 109226--109275 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
109216 AATTGCAATT
*
109226 AGTCCTGACCTTTCAATCA
1 AGTCCTGACCTTTCAATAA
*
109245 AGTCTTGACCTTTCAA-AA
1 AGTCCTGACCTTTCAATAA
109263 GAGTCCTGACCTT
1 -AGTCCTGACCTT
109276 CCTGACTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAATAA
Left flanking sequence: Indices 108726 -- 109225
TTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAAT
GACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTT
TTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCAT
TTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAG
AGACATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGG
TTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACT
AATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATT
Right flanking sequence: Indices 109276 -- 109775
CCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCT
GTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGA
CTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAC
Found at i:109348 original size:43 final size:43
Alignment explanation
Indices: 109294--109473 Score: 133
Period size: 43 Copynumber: 4.3 Consensus size: 43
109284 TTCCATAATG
* *
109294 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTT-CAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-CTTTGAAAGAC
*** * *
109337 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTTGAAATAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACTTTGAAAGAC
* * *
109380 AGTATTGACCTTTCAAGAAGAATCAGTCCTGA---T--CAGAT
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTTTGAAAGAC
* *** * *
109418 AGTCTTGATCTTTTTGGTAAG-GTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACTTTGAAAGAC
109461 AGTCTTGACCTTT
1 AGTCTTGACCTTT
109474 TTGATAAGGT
Statistics
Matches: 103, Mismatches: 25, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
38 23 0.22
39 3 0.03
40 1 0.01
41 1 0.01
42 7 0.07
43 65 0.63
44 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 108794 -- 109293
AATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTT
GTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGA
CATACAATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTT
GTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAAT
GGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATCAAGTC
TTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 109474 -- 109973
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTT
TTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACT
GTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGA
Found at i:109446 original size:81 final size:83
Alignment explanation
Indices: 109299--109473 Score: 264
Period size: 81 Copynumber: 2.1 Consensus size: 83
109289 TAATGAGTCC
109299 TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
1 TGACCTTTCAAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
*
109364 CCTGACTTTGAAATACAGTAT
63 CCTGACTTTGAAAGACAGTAT
* * *
109385 TGACCTTTCAAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
1 TGACCTTTCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
*
109448 GACTTTGAAAGACAGTCT
66 GACTTTGAAAGACAGTAT
109466 TGACCTTT
1 TGACCTTT
109474 TTGATAAGGT
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
81 55 0.65
82 2 0.02
86 27 0.32
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (83 bp):
TGACCTTTCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTAT
Left flanking sequence: Indices 108799 -- 109298
ATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTAT
TCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTG
TACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATAC
AATTTGTTTTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCAT
ATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGAC
CTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCC
Right flanking sequence: Indices 109474 -- 109973
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTT
TTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACT
GTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGA
Found at i:109482 original size:43 final size:42
Alignment explanation
Indices: 109316--109492 Score: 148
Period size: 43 Copynumber: 4.2 Consensus size: 42
109306 TCAAGAAGAA
* *
109316 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGATAAGG
* * ** * *
109359 TCAGTCCTGACTTTGAAATACAGTATTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGATAAG-G
* * * *
109402 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
109440 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
* *
109483 TGAGTACTGA
1 TCAGTCCTGA
109493 TGACATACAA
Statistics
Matches: 101, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
38 19 0.19
39 6 0.06
40 1 0.01
41 1 0.01
42 10 0.10
43 64 0.63
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 108816 -- 109315
AATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCA
CTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATG
GCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTTTCAAGTGA
GTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAG
TCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCAT
ATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGTCAAGTGAGTACT
AATGGCATACAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGACCTTTCAAAAGAGTCCTG
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 109493 -- 109992
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
Found at i:109643 original size:24 final size:24
Alignment explanation
Indices: 109614--109698 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
109604 TTCCATAATG
109614 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
109638 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
109657 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
109681 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
109699 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.59
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 109114 -- 109613
GGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTA
CTAATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATC
AAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 109699 -- 110198
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
Found at i:109665 original size:19 final size:19
Alignment explanation
Indices: 109614--109712 Score: 90
Period size: 24 Copynumber: 4.7 Consensus size: 19
109604 TTCCATAATG
109614 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
109638 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
109657 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
109681 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
109700 AGTCTTGACCTTT
1 AGTCCTGACCTTT
109713 TTGGTAAGGT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
19 27 0.40
20 2 0.03
21 6 0.09
22 3 0.04
23 1 0.01
24 28 0.42
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 109114 -- 109613
GGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTA
CTAATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATC
AAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 109713 -- 110212
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
Found at i:109668 original size:43 final size:43
Alignment explanation
Indices: 109614--109712 Score: 189
Period size: 43 Copynumber: 2.3 Consensus size: 43
109604 TTCCATAATG
*
109614 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
109657 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
109700 AGTCTTGACCTTT
1 AGTCTTGACCTTT
109713 TTGGTAAGGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 109114 -- 109613
GGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTA
CTAATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATC
AAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 109713 -- 110212
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
Found at i:109728 original size:43 final size:43
Alignment explanation
Indices: 109636--109893 Score: 177
Period size: 43 Copynumber: 6.2 Consensus size: 43
109626 TCAAGAAGAA
*** *
109636 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
109679 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* ** * *
109722 TTAGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
109765 TCAGTCCTGA-CTTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
109803 TCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** *
109841 TCAGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGG
* *
109884 TGAGTACTGA
1 TCAGTCCTGA
109894 TGACATACAA
Statistics
Matches: 171, Mismatches: 29, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
33 10 0.06
35 1 0.01
37 3 0.02
38 21 0.12
39 3 0.02
42 3 0.02
43 127 0.74
44 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (43 bp):
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 109136 -- 109635
GGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGTCAAGTGA
GTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGACCTTTCAAAAGAG
TCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGA
GTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTC
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 109894 -- 110393
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
Found at i:109964 original size:16 final size:16
Alignment explanation
Indices: 109940--109970 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
109930 CATTCTCATT
109940 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
109956 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
109971 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 109440 -- 109939
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATG
AGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 109971 -- 110470
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
Found at i:110025 original size:43 final size:43
Alignment explanation
Indices: 109940--110064 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
109930 CATTCTCATT
*** *
109940 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
109980 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
110023 AGTCCTGA-CTGTGAAAGACAGTATTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
110065 GAGTACTAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 51 0.71
44 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 109440 -- 109939
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATG
AGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 110065 -- 110564
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:110153 original size:180 final size:168
Alignment explanation
Indices: 109796--110126 Score: 400
Period size: 180 Copynumber: 1.9 Consensus size: 168
109786 AGTATTGACC
* *
109796 AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
1 AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
* * *
109861 CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
66 CAGTATTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTCCT
* * *
109926 CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCA
128 C-A-CA-T-TAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
109971 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
* * *
110036 AAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG-CA-ATTGGTCCTG
61 AAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATA-TGGTCAT-
110099 TCCTTC-CA-TAATCAGTCCTGACCTTTCA
124 TCC-TCACATTAATCAGTCCTGACCTTTCA
110127 AGAAGAATGA
Statistics
Matches: 138, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
172 18 0.13
175 20 0.14
176 6 0.04
177 4 0.03
178 2 0.01
179 2 0.01
180 86 0.62
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (168 bp):
AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTATTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATATGGTCATTCCTCAC
ATTAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
Left flanking sequence: Indices 109296 -- 109795
TCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTG
ATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACC
Right flanking sequence: Indices 110127 -- 110626
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
Found at i:110277 original size:119 final size:117
Alignment explanation
Indices: 110052--110262 Score: 313
Period size: 119 Copynumber: 1.8 Consensus size: 117
110042 AGTATTGACC
*
110052 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
1 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAAGTCC
* *
110117 TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
66 TGACCTTTC-A-AAGAATCAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCA
* *
110171 TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTC
1 TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATAAGTC
*
110235 CTGACCTTTC-AAG-A-CAGTCTTGACCTTT
65 CTGACCTTTCAAAGAATCAGTCCTGACCTTT
110263 TTGGTAAGGT
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
114 12 0.14
115 1 0.01
116 3 0.03
119 68 0.79
120 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (117 bp):
TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAAGTCC
TGACCTTTCAAAGAATCAGTCCTGACCTTTCAAGACAGTCCTGACCTTTCCA
Left flanking sequence: Indices 109552 -- 110051
ACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTC
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACC
Right flanking sequence: Indices 110263 -- 110762
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAT
ACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:110295 original size:43 final size:42
Alignment explanation
Indices: 110248--110400 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
110238 ACCTTTCAAG
110248 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
110291 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
110326 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
110367 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
110401 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 109748 -- 110247
TGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 110401 -- 110900
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
Found at i:110506 original size:19 final size:19
Alignment explanation
Indices: 110478--110548 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
110468 CTTCCATAAT
110478 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
110497 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
110515 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
110535 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
110549 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 109978 -- 110477
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 110549 -- 111048
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAG
AAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGAC
CATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGC
Found at i:110526 original size:38 final size:38
Alignment explanation
Indices: 110475--110605 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
110465 GTCCTTCCAT
110475 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
110513 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
110557 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
110594 AATCAGTCCTGA
1 AATCAGTCCTGA
110606 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 109975 -- 110474
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 110606 -- 111105
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCAC
CTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAA
GTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTC
ATTGAAGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTT
Found at i:110581 original size:43 final size:43
Alignment explanation
Indices: 110515--110889 Score: 251
Period size: 43 Copynumber: 9.2 Consensus size: 43
110505 ACCAGAAGAA
**
110515 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
110558 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
110596 TCAGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
110634 TTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* ** *** * **
110677 TCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
**
110718 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
110761 TCAGTCCTGA-CTGTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACCT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
110799 TCAGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
110837 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
110880 TGAGTACTGA
1 TCAGTCCTGA
110890 TGACATACAA
Statistics
Matches: 252, Mismatches: 53, Indels: 54
0.70 0.15 0.15
Matches are distributed among these distances:
33 23 0.09
35 2 0.01
37 6 0.02
38 43 0.17
39 6 0.02
41 31 0.12
42 2 0.01
43 139 0.55
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (43 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 110015 -- 110514
GTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 110890 -- 111389
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCT
TTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCA
ATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAA
TGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTC
ACGTCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCGTGACGTGACGTTCCCTGACGCAATT
CAAAGTTGTCCCTAACGCTTCGCTTTGCGAGTGCTTTGTACCCTTGACTTTCGTTGAGTAGAAAG
AAGAAAAGTGCGGCAAAACTCGGATTCGGGGAATAGGGCGAGAGCAGAAATACAAATGCGGATCT
AGGTTTTGATATTCCATCTTAGATCAGATACGGAAATGAAATGAT
Found at i:110584 original size:81 final size:76
Alignment explanation
Indices: 110477--110664 Score: 259
Period size: 76 Copynumber: 2.4 Consensus size: 76
110467 CCTTCCATAA
** *
110477 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA----TC-AGACAGTCTT
110542 GACCTTTTTGGTAAGG
61 GACCTTTTTGGTAAGG
* *
110558 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
110623 TTTTGGTAAGG
66 TTTTGGTAAGG
* * *
110634 TTAGTCCTGACTTTGAAATACAGTATTGACC
1 TCAGTCCTGACCTTGAAATACAGTCTTGACC
110665 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
81 45 0.45
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (76 bp):
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
TTTTGGTAAGG
Left flanking sequence: Indices 109977 -- 110476
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 110665 -- 111164
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGT
CCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCC
TGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAG
TGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGC
AACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGC
Found at i:110711 original size:19 final size:19
Alignment explanation
Indices: 110687--110751 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
110677 TCAGTACTGA
110687 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
110706 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
110730 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
110749 TTT
1 TTT
110752 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 110187 -- 110686
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 110752 -- 111251
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGT
CCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCAC
AAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGAC
AATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGA
TGAAGGTCACGTCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCGTGACGTGACGTTCCCTG
ACGCAATTCAAAGTTGTCCCTAACGCTTCGCTTTGCGAGTGCTTT
Found at i:110753 original size:203 final size:198
Alignment explanation
Indices: 110489--110890 Score: 689
Period size: 203 Copynumber: 2.0 Consensus size: 198
110479 AGTCCTGACC
*
110489 TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
1 TTTCAAGACAGTCTTGACCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
*
110554 AAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
66 AAGGTCAGTCCTGA-CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
* *
110618 GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTA
130 GATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTA
110683 CTGA
195 CTGA
110687 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGA-C---C-AGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
110752 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
61 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
* *
110817 TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
126 TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
110882 AGTACTGA
191 AGTACTGA
110890 T
1 T
110891 GACATACAAA
Statistics
Matches: 192, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
198 17 0.09
199 1 0.01
202 3 0.02
203 171 0.89
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (198 bp):
TTTCAAGACAGTCTTGACCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTAC
TGA
Left flanking sequence: Indices 109989 -- 110488
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTT
TTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTG
ACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
Right flanking sequence: Indices 110891 -- 111390
GACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTT
TCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAA
TGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAAT
GACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCA
CGTCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCGTGACGTGACGTTCCCTGACGCAATTC
AAAGTTGTCCCTAACGCTTCGCTTTGCGAGTGCTTTGTACCCTTGACTTTCGTTGAGTAGAAAGA
AGAAAAGTGCGGCAAAACTCGGATTCGGGGAATAGGGCGAGAGCAGAAATACAAATGCGGATCTA
GGTTTTGATATTCCATCTTAGATCAGATACGGAAATGAAATGATA
Found at i:110954 original size:22 final size:21
Alignment explanation
Indices: 110898--110957 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 21
110888 GATGACATAC
*
110898 AAATGAGTCTTGACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
** *
110919 TCA--AGTCCTCACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
110938 GAAATGAGTCCTGACCTTTC
1 -AAATGAGTCCTGACCTTTC
110958 CATAAGGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
19 14 0.48
20 1 0.03
21 1 0.03
22 13 0.45
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (21 bp):
AAATGAGTCCTGACCTTTCAA
Left flanking sequence: Indices 110398 -- 110897
TGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGT
ATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
Right flanking sequence: Indices 110958 -- 111457
CATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATG
AGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGA
CCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACG
TCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCGTGACGTGACGTTCCCTGACGCAATTCAA
AGTTGTCCCTAACGCTTCGCTTTGCGAGTGCTTTGTACCCTTGACTTTCGTTGAGTAGAAAGAAG
AAAAGTGCGGCAAAACTCGGATTCGGGGAATAGGGCGAGAGCAGAAATACAAATGCGGATCTAGG
TTTTGATATTCCATCTTAGATCAGATACGGAAATGAAATGATACGGAAATGAAATACTGGGATTT
TGAAGAGTAATGGAATTTTAGTGTAGAAAGAGTTGTATTACGCAT
Found at i:111392 original size:16 final size:16
Alignment explanation
Indices: 111371--111402 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
111361 TCTTAGATCA
111371 GATACGGAAATGAAAT
1 GATACGGAAATGAAAT
111387 GATACGGAAATGAAAT
1 GATACGGAAATGAAAT
111403 ACTGGGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (16 bp):
GATACGGAAATGAAAT
Left flanking sequence: Indices 110871 -- 111370
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTC
AAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCT
GACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGA
AGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATT
GCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGCCCTCTTTTGAAGAGGGCTTTGCTCGTGACGT
GACGTTCCCTGACGCAATTCAAAGTTGTCCCTAACGCTTCGCTTTGCGAGTGCTTTGTACCCTTG
ACTTTCGTTGAGTAGAAAGAAGAAAAGTGCGGCAAAACTCGGATTCGGGGAATAGGGCGAGAGCA
GAAATACAAATGCGGATCTAGGTTTTGATATTCCATCTTAGATCA
Right flanking sequence: Indices 111403 -- 111902
ACTGGGATTTTGAAGAGTAATGGAATTTTAGTGTAGAAAGAGTTGTATTACGCATTACTCTATTC
TATTGATTGCAACTTGCAACGAAATCTTTCCACATTGGATTTCCAGTTAGCAACTTATCTTTTTT
GCCTTTATCCTTTCTTCGGATGGAAGAAAACGAGTTGAGGGTCAAAGGAGGTTAGGGTCAAAATC
CCAATTTGTGAATGTACCAGTTGTGTCCGAAATGGTGCCAATAAGAAGAAACCGGGCATTTCCAG
ATATCTTACTCAAAATCATCGAGATTGGTCGATTTGAATGGCCTTTTACAAACCACCTCAGGATG
CAGCCAACATCTGAGACCATGGGAGACAGGCCCTTGCTCTTGGATAGGGCGAGGTACAAAAAGGG
CTTCTTCAAGGAATTGGGATAGCAAAGGAAGGGACAGGCGGACCGACAGAGAACTACTGGCTGAG
GAGGACTTTCGCCTCGCCCACGAGCGGATTTGATTTGATGTAGAC
Found at i:117603 original size:21 final size:21
Alignment explanation
Indices: 117577--117638 Score: 76
Period size: 19 Copynumber: 3.1 Consensus size: 21
117567 AGGAAAGGCA
117577 ATTATGGAAAGGTCAGGACTC
1 ATTATGGAAAGGTCAGGACTC
*
117598 ATTATGG-AAGGACAGGAC-C
1 ATTATGGAAAGGTCAGGACTC
* *
117617 CTT-TTGAAAGGTCAGGACTC
1 ATTATGGAAAGGTCAGGACTC
117637 AT
1 AT
117639 GACAATTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
18 2 0.06
19 13 0.38
20 12 0.35
21 7 0.21
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.24
Consensus pattern (21 bp):
ATTATGGAAAGGTCAGGACTC
Left flanking sequence: Indices 117077 -- 117576
TTTGTTCCCGAAACTCCCCTCCGCCTCCCCTCTATCTTTCGGCCACGAAAGACAAAGAAGGCATG
AACAGCCGAGCAGTATCAGACACCTGATCCCGAAAAAAGGTACGAAACCAATACGCCGCGCCGGC
TCTTCGACCAAGGAGGCATTCAACCCATCATGCCGACTACTATGACTAATACGACGACAGGGGGA
AGTCTCCAACATGGAAGGCTTCGCGGGGATAAGGATGGAGTCTCGCGGGGCTGCTTCGCTCGCCA
CTACTGTTCTTTTTTTTTTTATGCAACGTCACGTCATGTCATGAGCAAAGCACTCTGAACAAGAG
GGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAA
AGAAGGGAACTCGCAAAGCGAAGCTCTGACGGAAATGGCTTTCAATCTGATAGTTGGCATTAGTG
CTTCTTAAGGAAAGGAGATTATGGAAATGATGGAAAGGAAAGGCA
Right flanking sequence: Indices 117639 -- 118138
GACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATA
CAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGACGAGTTCCCTTCTTTCAGAA
AGCACGCACTCGCAAAGCGAAGCGTGAGGGCTTTGCTCGCTGGGGGCAAAGCACTCTTTTTTCGC
TTTGCGATCCTCGAACGCATGTCTTGATCCAATGCCGGGTGATTGGCAATGAAAGATCAAACTGT
CGAAGAGCGCAATCAAACGAGCAAAGCACTCTGAACAAGAGGGCTTTGTTCTGACGTGACGTGAC
CTTCAGCAATTTGAAGTTGCGAGTGCTTTGATCCTAAAGCGGTGATAGATCTTTTTTAAGACAAA
TTGGGGCTTTGAAAGGAATTCGATGACACTACATCTGCGCAGAAG
Found at i:117671 original size:28 final size:28
Alignment explanation
Indices: 117648--117720 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
117638 TGACAATTGT
117648 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
117676 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
*
117704 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
117721 CATACCAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 117148 -- 117647
CGAGCAGTATCAGACACCTGATCCCGAAAAAAGGTACGAAACCAATACGCCGCGCCGGCTCTTCG
ACCAAGGAGGCATTCAACCCATCATGCCGACTACTATGACTAATACGACGACAGGGGGAAGTCTC
CAACATGGAAGGCTTCGCGGGGATAAGGATGGAGTCTCGCGGGGCTGCTTCGCTCGCCACTACTG
TTCTTTTTTTTTTTATGCAACGTCACGTCATGTCATGAGCAAAGCACTCTGAACAAGAGGGCTTT
GCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGG
GAACTCGCAAAGCGAAGCTCTGACGGAAATGGCTTTCAATCTGATAGTTGGCATTAGTGCTTCTT
AAGGAAAGGAGATTATGGAAATGATGGAAAGGAAAGGCAATTATGGAAAGGTCAGGACTCATTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 117721 -- 118220
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGACGAGTTCCCTTCTTTCAGAAAGCACGCACTCGCAAAG
CGAAGCGTGAGGGCTTTGCTCGCTGGGGGCAAAGCACTCTTTTTTCGCTTTGCGATCCTCGAACG
CATGTCTTGATCCAATGCCGGGTGATTGGCAATGAAAGATCAAACTGTCGAAGAGCGCAATCAAA
CGAGCAAAGCACTCTGAACAAGAGGGCTTTGTTCTGACGTGACGTGACCTTCAGCAATTTGAAGT
TGCGAGTGCTTTGATCCTAAAGCGGTGATAGATCTTTTTTAAGACAAATTGGGGCTTTGAAAGGA
ATTCGATGACACTACATCTGCGCAGAAGAAGGGAGAACTTGCTCTACTCTATGAGGGGGGCCGGG
CCGTATTCTGTTAACCAATCCGCCCCTGATAGACCAGCCGTTGCA
Found at i:119771 original size:28 final size:28
Alignment explanation
Indices: 119739--119839 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
119729 TGTTGGTATG
*
119739 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
119767 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
119795 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
119823 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
119840 ACAATTGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 119239 -- 119738
AGAGAAAAAGGAGGTGTTGTCGGCACTTGAGCAGATTGAACCATGTGAGCGAGAGACGAATCCCG
GCAAAGAATCGAGCCAGAATAAGAGATATGATAGACAAGGGGACGGATCGGATCCCGTCAAGGTC
TTTGACGCTCAAGGCAGTGAAATGGAAAGGTTCAGTAGTCGATCCGAGTAAGGCCTTAGCCGCGA
AAGCCGTAAATGCGAGGTTCTGACGGTGAGAGCCTATAGCTGACCACGAATTTGGGGAAGTGGAA
AGTTTAAGAGATAGGTCGGACCTAAAAGGATCAGAAGGCTCTCCATCTCTGTGGCGGCCAAGAGT
TCCCATTCGTGTGCGAGAATCATCGTATAGAAAAAAACGGAGAGTGACCGACAAAGCACTCGCAA
CTTTCATTTTCAGGACATCAATTTGCAATTGTCATGGATTTTGGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 119840 -- 120339
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTTGTAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
TTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAATCAAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
Found at i:120032 original size:43 final size:43
Alignment explanation
Indices: 119985--120140 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
119975 CTGACCTTTC
119985 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
120028 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
120061 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
120104 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
120141 TGACATACAA
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.14
35 1 0.01
37 3 0.03
38 21 0.24
39 3 0.03
41 1 0.01
43 46 0.53
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 119485 -- 119984
TTGGGGAAGTGGAAAGTTTAAGAGATAGGTCGGACCTAAAAGGATCAGAAGGCTCTCCATCTCTG
TGGCGGCCAAGAGTTCCCATTCGTGTGCGAGAATCATCGTATAGAAAAAAACGGAGAGTGACCGA
CAAAGCACTCGCAACTTTCATTTTCAGGACATCAATTTGCAATTGTCATGGATTTTGGAAGGCAT
ACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGC
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTTGTAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 120141 -- 120640
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTGTTTTGGTATGGTGAGTACTCAT
TGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTA
CTAATGGCATACAATTGTAATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCT
GACTTTTCCTCAATCATTCTCATGAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGG
TATGGTGAGTACTAATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGAAAGTACTAATG
GCATTTGTTTGCACAGTGAGTACTAATGGCATACAATTTTTGGTC
Found at i:120208 original size:64 final size:65
Alignment explanation
Indices: 120116--120267 Score: 220
Period size: 64 Copynumber: 2.4 Consensus size: 65
120106 GACAGTCTTG
* * *
120116 ACCT-TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAA-ACAGTCTT
1 ACCTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAACA-AGTCCT
120179 C
65 C
* * *
120180 ATCTG-TTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTG
1 ACCTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAACAAGTCCTC
120244 ACCTGTTTTGGTATGGTGAGTACT
1 ACCTGTTTTGGTATGGTGAGTACT
120268 CATTGTTGAT
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
64 59 0.76
65 19 0.24
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (65 bp):
ACCTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAACAAGTCCTC
Left flanking sequence: Indices 119616 -- 120115
AAAGCACTCGCAACTTTCATTTTCAGGACATCAATTTGCAATTGTCATGGATTTTGGAAGGCATA
CAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTTGTAAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
Right flanking sequence: Indices 120268 -- 120767
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATACAATTGTAATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGT
TCTGACTTTTCCTCAATCATTCTCATGAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTT
TGGTATGGTGAGTACTAATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGAAAGTACTA
ATGGCATTTGTTTGCACAGTGAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGC
ATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTC
CTGACTTTTCCAGAATGAGTCCTGACCTTTCAAGAAGAATCAGTC
Found at i:120325 original size:28 final size:29
Alignment explanation
Indices: 120282--120345 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 29
120272 GTTGATGGAA
120282 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
120310 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
120338 AATGGCAT
1 AATGGCAT
120346 ACAATTGTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 31 0.89
29 4 0.11
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 119782 -- 120281
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTG
CAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCAT
TTTTTGTAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCA
AGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 120346 -- 120845
ACAATTGTAATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCT
CAATCATTCTCATGAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGT
ACTAATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTT
GCACAGTGAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAG
AATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
Found at i:120353 original size:28 final size:28
Alignment explanation
Indices: 120294--120360 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
120284 TGGCATTTGT
****
120294 TTGTCAAGTGAGTACTAATGGCATTTTG
1 TTGTCAAGTGAGTACTAATGGCATACAA
120322 TTGTCAAGTGAGTACTAATGGCATACAA
1 TTGTCAAGTGAGTACTAATGGCATACAA
120350 TTGT-AA-TGAGT
1 TTGTCAAGTGAGT
120361 CCTGACCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.14
27 2 0.06
28 28 0.80
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (28 bp):
TTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 119794 -- 120293
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTC
ATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTTGTAAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCT
GTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTG
TTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGT
Right flanking sequence: Indices 120361 -- 120860
CCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATGA
GTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGT
TTTTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTA
ATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAGAATGAGTCCTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
Found at i:120510 original size:16 final size:16
Alignment explanation
Indices: 120489--120519 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
120479 TCATTCTCAT
120489 GAGTCCTGACCTTTCA
1 GAGTCCTGACCTTTCA
120505 GAGTCCTGACCTTTC
1 GAGTCCTGACCTTTC
120520 CATCTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (16 bp):
GAGTCCTGACCTTTCA
Left flanking sequence: Indices 119989 -- 120488
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCT
GTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTG
TTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTAATGAGTCCTGACCTTTCAAAAGGG
TCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGA
CCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCAT
Right flanking sequence: Indices 120520 -- 121019
CATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTA
CTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCC
TGACCTTCCTGACTTTTCCAGAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTC
Found at i:120699 original size:19 final size:19
Alignment explanation
Indices: 120672--120721 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
120662 AATTGCAATG
*
120672 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
* *
120691 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
120710 AGTCCTGACCTT
1 AGTCCTGACCTT
120722 CCTGACTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 120172 -- 120671
CAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCA
AGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTAATGAGTCCTGAC
CTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCC
AGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATGAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTTTAC
AGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCA
TACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 120722 -- 121221
CCTGACTTTTCCAGAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTCACCTTCCTGACTTTT
CCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
CCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCCATAACATTCAGGA
AATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAA
Found at i:120767 original size:24 final size:24
Alignment explanation
Indices: 120734--120824 Score: 129
Period size: 24 Copynumber: 4.0 Consensus size: 24
120724 TGACTTTTCC
*
120734 AGAATGAGTCCTGACCTTTCAAGA
1 AGAATCAGTCCTGACCTTTCAAGA
120758 AGAATCAGTCCTGACCTTTC---A
1 AGAATCAGTCCTGACCTTTCAAGA
*
120779 AG-A-CAGTCTTGACCTTTCAAGA
1 AGAATCAGTCCTGACCTTTCAAGA
120801 AGAATCAGTCCTGACCTTTCAAGA
1 AGAATCAGTCCTGACCTTTCAAGA
120825 CAGTCTTGAC
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
19 14 0.24
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 37 0.63
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (24 bp):
AGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 120234 -- 120733
TCAAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTAATGAGTCCT
GACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATGAGTC
CTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTT
TACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATG
GCATACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCC
Right flanking sequence: Indices 120825 -- 121324
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTC
CAGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAA
GTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAAT
GATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCAT
CAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTG
Found at i:120791 original size:19 final size:19
Alignment explanation
Indices: 120740--120838 Score: 90
Period size: 24 Copynumber: 4.7 Consensus size: 19
120730 TTCCAGAATG
120740 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
120764 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
120783 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
120807 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
120826 AGTCTTGACCTTT
1 AGTCCTGACCTTT
120839 TTGGTAAGGT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
19 27 0.40
20 2 0.03
21 6 0.09
22 3 0.04
23 1 0.01
24 28 0.42
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 120240 -- 120739
CCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTAATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGA
GAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATGAGTCCTGACC
TTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTTTACAGT
GAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATAC
AATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAGAATG
Right flanking sequence: Indices 120839 -- 121338
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTCAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCC
ATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCA
ATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGAT
GGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTA
Found at i:120794 original size:43 final size:43
Alignment explanation
Indices: 120672--120881 Score: 210
Period size: 43 Copynumber: 4.7 Consensus size: 43
120662 AATTGCAATG
*
120672 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA-AAGAGTCC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT-C
* * * * *
120715 TGACCTTCCTGACTTTTCCAGAATGAGTCCTGACCTTTCAAGAAGAATC
1 --A--GTCCTGACCTTTCAAG-A-CAGTCTTGACCTTTCAAGAAGAATC
120764 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** * *
120807 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
*
120850 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
120882 TTGATAAGGT
Statistics
Matches: 141, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
42 4 0.03
43 83 0.59
44 4 0.03
45 14 0.10
47 14 0.10
48 1 0.01
49 16 0.11
50 5 0.04
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 120172 -- 120671
CAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCA
AGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTAATGAGTCCTGAC
CTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCC
AGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATGAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTTTAC
AGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCA
TACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 120882 -- 121381
TTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTT
GACCTTTCCAGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTT
TCCAGAAAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGA
AAGGAAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCA
TTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTAC
TAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAG
Found at i:120877 original size:19 final size:19
Alignment explanation
Indices: 120850--120920 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
120840 TGGTAAGGTT
120850 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
120869 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
* *
120893 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
120912 AGTCTTGAC
1 AGTCCTGAC
120921 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 16 0.40
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 120350 -- 120849
TTGTAATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAAT
CATTCTCATGAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTA
ATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCAC
AGTGAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAGAATG
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 120921 -- 121420
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTCACCTTCCTGACTTTTCCAT
AATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTG
ACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCCATAACATTCAGGAAATC
GTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTATGCCA
TTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTA
ATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
Found at i:120882 original size:43 final size:43
Alignment explanation
Indices: 120762--120943 Score: 208
Period size: 43 Copynumber: 4.2 Consensus size: 43
120752 TCAAGAAGAA
* ** * *
120762 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAG-G
* *
120805 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
120848 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
* *
120891 TCAGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTAAAGACAGTCTTGACCTTTTTGATAAGG
* *
120934 TGAGTACTGA
1 TCAGTCCTGA
120944 TGACATACAA
Statistics
Matches: 123, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
42 4 0.03
43 112 0.91
44 7 0.06
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 120262 -- 120761
AGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATACAATTGTAATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCA
TAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAG
GTGAGTTCTGACTTTTCCTCAATCATTCTCATGAGTCCTGACCTTTCAGAGTCCTGACCTTTCCA
TCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTTTACAGTGAGTACTAATGGCATATGGAAA
GTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACT
AATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTG
ACCTTCCTGACTTTTCCAGAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 120944 -- 121443
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTA
TGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGAC
CTTTCCAGAAAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCAT
GGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATG
CCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAG
TACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
Found at i:121543 original size:28 final size:28
Alignment explanation
Indices: 121352--121533 Score: 316
Period size: 28 Copynumber: 6.5 Consensus size: 28
121342 GCATATGGAA
121352 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
121380 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
121408 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
121436 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
121464 AGTACTAATGGCATTT-TGTTGTCAAGTG
1 AGTACTAATGGCATTTGT-TTGTCAAGTG
121492 AGTACTAATGGCATTT-TGTTGTCAAGTG
1 AGTACTAATGGCATTTGT-TTGTCAAGTG
121520 AGTACTAATGGCAT
1 AGTACTAATGGCAT
121534 ACAATTGTCA
Statistics
Matches: 152, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
27 1 0.01
28 149 0.98
29 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 120852 -- 121351
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTCACCTTCCTGACTTTT
CCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
CCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCCATAACATTCAGGA
AATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTAT
GCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATG
GCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 121534 -- 122033
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACTTT
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAG
Found at i:121591 original size:20 final size:19
Alignment explanation
Indices: 121543--121596 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
121533 TACAATTGTC
*
121543 ATGAGTCCTGACCTTTCAA
1 ATGAGTCCTGACCTTCCAA
* * *
121562 AAGGGTCCTGTCCTTCCATA
1 ATGAGTCCTGACCTTCCA-A
121582 ATGAGTCCTGACCTT
1 ATGAGTCCTGACCTT
121597 TCAAGAAGAA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGAGTCCTGACCTTCCAA
Left flanking sequence: Indices 121043 -- 121542
TTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCCATAACATTC
AGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATT
GTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGG
TATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTT
GTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTC
Right flanking sequence: Indices 121597 -- 122096
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACT
TTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Found at i:121613 original size:24 final size:24
Alignment explanation
Indices: 121581--121626 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
121571 GTCCTTCCAT
121581 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
121605 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
121627 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 121081 -- 121580
TACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCA
GAAAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGG
AAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTAT
CCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATAC
AATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 121627 -- 122126
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACTTTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAGGAGTCCTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
Found at i:121656 original size:43 final size:43
Alignment explanation
Indices: 121609--121778 Score: 139
Period size: 43 Copynumber: 4.2 Consensus size: 43
121599 AAGAAGAATG
*
121609 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
121652 AGTCCTTACTTTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
121690 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
121728 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
121771 AGTACTGA
1 AGTCCTGA
121779 TGACATACAA
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 20 0.21
39 3 0.03
41 1 0.01
42 4 0.04
43 53 0.55
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 121109 -- 121608
CTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAAGTCCTGACCTTTCCATAACATTCA
GGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTG
TATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGT
ATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTG
TTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTA
ATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAA
GGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 121779 -- 122278
TGACATACAAATGAGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTG
ACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
TGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGA
Found at i:121813 original size:19 final size:19
Alignment explanation
Indices: 121786--121826 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
121776 TGATGACATA
* *
121786 CAAATGAGTCTTGACCTTT
1 CAAAGGAGTCCTGACCTTT
121805 CAAAGGAGTCCTGACCTTT
1 CAAAGGAGTCCTGACCTTT
121824 CAA
1 CAA
121827 GAAGAATCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (19 bp):
CAAAGGAGTCCTGACCTTT
Left flanking sequence: Indices 121286 -- 121785
ATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTT
GTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACTTTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 121827 -- 122326
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
Found at i:121862 original size:19 final size:20
Alignment explanation
Indices: 121792--121866 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 20
121782 CATACAAATG
* *
121792 AGTCTTGACCTTTCAA-AGG
1 AGTCCTGACCTTTCAAGAGC
121811 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAG-AG---C
121835 AGTCCTGACCTTTCAAGA-C
1 AGTCCTGACCTTTCAAGAGC
*
121854 AGTCTTGACCTTT
1 AGTCCTGACCTTT
121867 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 28 0.58
21 2 0.04
23 1 0.02
24 17 0.35
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (20 bp):
AGTCCTGACCTTTCAAGAGC
Left flanking sequence: Indices 121292 -- 121791
ATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCT
GACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACTTTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 121867 -- 122366
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTC
Found at i:121880 original size:43 final size:42
Alignment explanation
Indices: 121833--122004 Score: 121
Period size: 43 Copynumber: 4.2 Consensus size: 42
121823 TCAAGAAGAA
*
121833 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
121876 TCAGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
121914 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
121952 TTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
121995 TGAGTACTGA
1 TCAGTCCTGA
122005 TGACATACAA
Statistics
Matches: 96, Mismatches: 20, Indels: 26
0.68 0.14 0.18
Matches are distributed among these distances:
33 11 0.11
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.57
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 121333 -- 121832
GTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
TACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 122005 -- 122504
TGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTC
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCC
TGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
Found at i:121958 original size:76 final size:78
Alignment explanation
Indices: 121826--121982 Score: 219
Period size: 76 Copynumber: 2.0 Consensus size: 78
121816 TGACCTTTCA
121826 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
* *
121891 AAATACAGTCTTGACC
63 AAAGACAGTATTGACC
* * * *
121907 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
121970 GACAGTATTGACC
66 GACAGTATTGACC
121983 TTTTTGATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
76 51 0.73
77 2 0.03
81 17 0.24
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTATTGACC
Left flanking sequence: Indices 121326 -- 121825
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTTACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCA
Right flanking sequence: Indices 121983 -- 122482
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
Found at i:121983 original size:226 final size:225
Alignment explanation
Indices: 121584--122472 Score: 1597
Period size: 226 Copynumber: 4.0 Consensus size: 225
121574 CTTCCATAAT
*
121584 GAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
* * *
121649 GTCAGTCCTTACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
66 GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
121714 TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
131 TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
121779 TGACATACAAATGAGTCTTGACCTTTCAAA
196 TGACATACAAATGAGTCTTGACCTTTCAAA
121809 GGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
1 -GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
121874 GGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
65 GGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
*
121939 CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTG
130 CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
**
122004 ATGACATACAAATGAGTCTTGACC---GGAA
195 ATGACATACAAATGAGTCTTGACCTTTCAAA
*
122032 -AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
*
122096 GTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
66 GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
122161 TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
131 TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
122226 TGACATACAAATGAGTCTTGACCTTTCAAAA
196 TGACATACAAATGAGTCTTGACCTTTC-AAA
* * * *
122257 CAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
1 GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
*
122322 GTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
66 GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
*
122387 TTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
131 TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
122452 TGACATACAAATGAGTCTTGA
196 TGACATACAAATGAGTCTTGA
122473 TGGTCATTCC
Statistics
Matches: 639, Mismatches: 19, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
221 214 0.33
223 2 0.00
225 2 0.00
226 421 0.66
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (225 bp):
GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAA
Left flanking sequence: Indices 121084 -- 121583
TGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAA
AGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAA
TGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCA
TCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGC
ATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAAT
TGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 122473 -- 122972
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTG
ACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATT
GCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGAC
Found at i:122103 original size:43 final size:42
Alignment explanation
Indices: 122056--122225 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
122046 AAGAAGAATG
*
122056 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * * *
122099 AGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
122137 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
122175 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
122218 AGTACTGA
1 AGTCCTGA
122226 TGACATACAA
Statistics
Matches: 93, Mismatches: 21, Indels: 26
0.66 0.15 0.19
Matches are distributed among these distances:
33 10 0.11
37 3 0.03
38 21 0.23
39 3 0.03
41 1 0.01
42 2 0.02
43 53 0.57
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 121556 -- 122055
TTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTTACTTTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAGGAGTCC
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 122226 -- 122725
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTA
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
Found at i:122261 original size:19 final size:19
Alignment explanation
Indices: 122239--122313 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
122229 CATACAAATG
122239 AGTCTTGACCTTTCAAAAC
1 AGTCTTGACCTTTCAAAAC
*
122258 AGTCTTCACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC---AA-AA-C
* *
122282 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAAAC
*
122301 AGTCTTGATCTTT
1 AGTCTTGACCTTT
122314 TTGGTAAGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 25 0.56
20 1 0.02
21 2 0.04
22 2 0.04
23 2 0.04
24 13 0.29
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAAAC
Left flanking sequence: Indices 121739 -- 122238
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 122314 -- 122813
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCA
AGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTC
Found at i:122405 original size:76 final size:78
Alignment explanation
Indices: 122273--122429 Score: 255
Period size: 76 Copynumber: 2.0 Consensus size: 78
122263 TCACCTTTCA
122273 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
122338 AAATACAGTCTTGACC
63 AAATACAGTCTTGACC
* *
122354 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
122417 TACAGTCTTGACC
66 TACAGTCTTGACC
122430 TTTTTGATAA
Statistics
Matches: 74, Mismatches: 2, Indels: 5
0.91 0.02 0.06
Matches are distributed among these distances:
76 55 0.74
77 2 0.03
81 17 0.23
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
TACAGTCTTGACC
Left flanking sequence: Indices 121773 -- 122272
TACTGATGACATACAAATGAGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCA
Right flanking sequence: Indices 122430 -- 122929
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGAT
TCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTT
CACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAG
Found at i:122430 original size:447 final size:447
Alignment explanation
Indices: 121585--122472 Score: 1668
Period size: 447 Copynumber: 2.0 Consensus size: 447
121575 TTCCATAATG
121585 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
121650 TCAGTCCTTACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
66 TCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
121715 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
131 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
** *
121780 GACATACAAATGAGTCTTGACCTTTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACC
196 GACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACC
121845 TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
261 TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
121910 AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
326 AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
121975 TATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
391 TATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
122032 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
122097 TCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
66 TCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
122162 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
131 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
*
122227 GACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACC
196 GACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACC
* *
122292 TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
261 TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
*
122357 AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAG
326 AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
*
122422 TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
391 TATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
122473 TGGTCATTCC
Statistics
Matches: 429, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
447 429 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (447 bp):
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
Left flanking sequence: Indices 121085 -- 121584
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTAAATAATGAGTCTTGACCTTTCCAGAAA
GTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAAT
GATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCAT
CAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATACAATT
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATG
Right flanking sequence: Indices 122473 -- 122972
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTG
ACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATT
GCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGAC
Found at i:122546 original size:24 final size:24
Alignment explanation
Indices: 122514--122579 Score: 105
Period size: 24 Copynumber: 2.8 Consensus size: 24
122504 GACCTTTCAG
* *
122514 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
*
122538 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
122562 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
122580 CAGTCTTGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 122014 -- 122513
AATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 122580 -- 123079
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCT
CACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGA
CAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAA
GGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAG
GACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
AACTCACCTTCTCAAAAAGGTCAATACTGTATTTCACAGTCAGGA
Found at i:122581 original size:280 final size:277
Alignment explanation
Indices: 122238--122757 Score: 891
Period size: 280 Copynumber: 1.9 Consensus size: 277
122228 ACATACAAAT
*
122238 GAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
1 GAGTCTTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
* *
122303 TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
66 TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
* *
122368 TGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCT
131 TGATTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
122431 TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
196 TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
122496 TTAGTCCTGACCTTTCA
261 TTAGTCCTGACCTTTCA
* *
122513 GAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA
1 GAGTCTTGACCTTT-C--AA-AA-CAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
122578 GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
61 GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
122643 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
126 AGTCCTGA---TTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
122708 CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
188 CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
122758 CCTTTCAATC
Statistics
Matches: 228, Mismatches: 7, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
275 14 0.06
276 1 0.00
278 2 0.01
279 2 0.01
280 109 0.48
284 2 0.01
285 98 0.43
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (277 bp):
GAGTCTTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCA
Left flanking sequence: Indices 121738 -- 122237
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
TTCAAAGGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
Right flanking sequence: Indices 122758 -- 123257
CCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCA
GGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCAC
ACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
Found at i:122609 original size:43 final size:42
Alignment explanation
Indices: 122562--122736 Score: 164
Period size: 43 Copynumber: 4.2 Consensus size: 42
122552 AAGAAGAATG
*
122562 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
122605 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
122643 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
122686 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
122729 AGTACTGA
1 AGTCCTGA
122737 TGACATACAA
Statistics
Matches: 104, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
37 3 0.03
38 24 0.23
39 2 0.02
42 6 0.06
43 66 0.63
44 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 122062 -- 122561
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 122737 -- 123236
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCT
TTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAA
TTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTC
TTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
Found at i:122647 original size:81 final size:81
Alignment explanation
Indices: 122553--122714 Score: 270
Period size: 81 Copynumber: 2.0 Consensus size: 81
122543 TGACCTTTCA
*
122553 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
*
122618 AAATACAGTCTTGACC
66 AAAGACAGTCTTGACC
* * * *
122634 AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
122699 AAAGACAGTCTTGACC
66 AAAGACAGTCTTGACC
122715 TTTTTGATAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (81 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACC
Left flanking sequence: Indices 122053 -- 122552
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACC
TTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
Right flanking sequence: Indices 122715 -- 123214
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCT
TTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGT
GCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCA
GGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCC
TTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTC
ACCTTCTCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCA
TGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCAT
Found at i:122801 original size:22 final size:21
Alignment explanation
Indices: 122745--122804 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 21
122735 GATGACATAC
*
122745 AAATGAGTCTTGACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
** *
122766 TCA--AGTCCTCACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
122785 GAAATGAGTCCTGACCTTTC
1 -AAATGAGTCCTGACCTTTC
122805 CATAAGGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
19 14 0.48
20 1 0.03
21 1 0.03
22 13 0.45
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (21 bp):
AAATGAGTCCTGACCTTTCAA
Left flanking sequence: Indices 122245 -- 122744
GACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAT
CTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAA
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
Right flanking sequence: Indices 122805 -- 123304
CATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTG
TATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTC
TTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCA
Found at i:122999 original size:16 final size:16
Alignment explanation
Indices: 122978--123008 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
122968 AGGACCCTTT
122978 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
122994 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
123009 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 122478 -- 122977
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTT
TCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 123009 -- 123508
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATACTGTATTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATT
Found at i:123203 original size:28 final size:28
Alignment explanation
Indices: 123180--123299 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
123170 TGACAATTGT
123180 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
123208 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
123236 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
123264 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
123292 ATGCCATT
1 ATGCCATT
123300 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 122680 -- 123179
AAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAA
GGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGC
CATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATACTGTATTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 123300 -- 123799
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAAAATACTCATCA
CTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTG
GATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACG
Found at i:123371 original size:19 final size:19
Alignment explanation
Indices: 123343--123415 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 19
123333 CAGGTGAGTC
*
123343 GGTCAGGACTCTTTTGAAA
1 GGTCAGGACTCTCTTGAAA
* *
123362 GGTCAAGACTGTCTTGAAA
1 GGTCAGGACTCTCTTGAAA
123381 GGTCAGGACTCATTCTTCTTGAAA
1 GGTCAGGA--C--TC-TCTTGAAA
123405 GGTCAGGACTC
1 GGTCAGGACTC
123416 ATTGCAATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
19 23 0.52
20 2 0.05
21 1 0.02
22 1 0.02
23 1 0.02
24 16 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (19 bp):
GGTCAGGACTCTCTTGAAA
Left flanking sequence: Indices 122843 -- 123342
GTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGT
CAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTCTCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACT
CATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTC
Right flanking sequence: Indices 123416 -- 123915
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTG
CTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCA
AAAAATACTCATCACTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACA
CTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACC
TTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCAC
GTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCA
Found at i:123402 original size:24 final size:24
Alignment explanation
Indices: 123373--123418 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
123363 GTCAAGACTG
123373 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
123397 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
123419 GCAATTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 122873 -- 123372
GCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAATACTGTATT
TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTC
TTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATAC
CAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGACTG
Right flanking sequence: Indices 123419 -- 123918
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCAT
ATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTC
CCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAA
AATACTCATCACTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTC
GCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTG
ACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTC
ACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATT
Found at i:123506 original size:20 final size:20
Alignment explanation
Indices: 123481--123562 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
123471 TGACAACAAA
123481 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
123501 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
123529 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
123549 ATGCCATTAGTACT
1 ATGCCATTAGTACT
123563 CACTATACCA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 122981 -- 123480
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTC
TCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 123563 -- 124062
CACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGT
ATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAAAATACTCATCACTT
TTCATAAGCACACTCGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTGGAT
TCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGC
TCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAG
CCCTCTTGTTAATTGCACAAAGCACTCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGT
CAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAG
TGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGAC
Found at i:124053 original size:22 final size:22
Alignment explanation
Indices: 124023--124087 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
124013 ATCAGTGACC
*
124023 TTATGGAAAGGTCAGGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
* *
124045 TTCTTGAAAGGTGAGGA--C-T
1 TTATTGAAAGGTCAGGACTCAT
* *
124064 TGATTGAAAGGTCAAGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
124086 TT
1 TT
124088 GTATGTCATC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 1 0.03
22 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
TTATTGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 123523 -- 124022
AAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTATACCAACATGAGTACTCACC
ATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTG
TATGCCATTAGTGCTGACCATCAAAAAATACTCATCACTTTTCATAAGCACACTCGCTTCGCTTT
GGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCA
AAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGC
AACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCAC
TCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGA
TATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACC
Right flanking sequence: Indices 124088 -- 124587
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
TACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
Found at i:124161 original size:43 final size:42
Alignment explanation
Indices: 124096--124358 Score: 225
Period size: 43 Copynumber: 6.2 Consensus size: 42
124086 TTGTATGTCA
* * *
124096 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
124139 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
124181 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 -TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* * *
124220 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
124263 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* *** *
124306 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
124349 TCAGGACTGA
1 TCAGGACTGA
124359 TTATGGAAGG
Statistics
Matches: 184, Mismatches: 25, Indels: 22
0.80 0.11 0.10
Matches are distributed among these distances:
37 3 0.02
38 20 0.11
39 6 0.03
42 11 0.06
43 138 0.75
44 6 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 123596 -- 124095
ACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCAT
TAGTGCTGACCATCAAAAAATACTCATCACTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCC
TTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAG
TCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAA
ATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATTTC
AGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 124359 -- 124858
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATG
Found at i:124222 original size:19 final size:19
Alignment explanation
Indices: 124200--124270 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
124190 GATTCTTCTG
124200 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTATTTCACA
* *
124219 GTCAGGACTG-ACCTTATCAAAAA
1 GTCAAGACTGTA--TT-TC--ACA
124242 GGTCAAGACTGTATTTCACA
1 -GTCAAGACTGTATTTCACA
*
124262 GTCAGGACT
1 GTCAAGACT
124271 AACCTTACCA
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.03
19 17 0.43
20 4 0.10
21 2 0.05
22 2 0.05
23 4 0.10
24 9 0.22
25 1 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTATTTCACA
Left flanking sequence: Indices 123700 -- 124199
GCACACTCGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAG
CCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCG
TTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTT
GTTAATTGCACAAAGCACTCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGC
ATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTT
ATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAC
CAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 124271 -- 124770
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCT
Found at i:124268 original size:124 final size:124
Alignment explanation
Indices: 124096--124324 Score: 386
Period size: 124 Copynumber: 1.8 Consensus size: 124
124086 TTGTATGTCA
* * *
124096 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
1 TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
124161 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
66 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
* *
124220 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
1 TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
* * *
124285 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
66 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
124325 AAAGGTCAAG
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
124 97 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (124 bp):
TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
Left flanking sequence: Indices 123596 -- 124095
ACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCAT
TAGTGCTGACCATCAAAAAATACTCATCACTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCC
TTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAG
TCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAA
ATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATTTC
AGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 124325 -- 124824
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
ATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
Found at i:124306 original size:19 final size:19
Alignment explanation
Indices: 124282--124357 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
124272 ACCTTACCAA
124282 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
124301 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
124325 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
124344 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
124358 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 123782 -- 124281
AAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCG
CAACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCA
CTCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTG
ATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACT
CATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 124358 -- 124857
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
Found at i:124492 original size:43 final size:43
Alignment explanation
Indices: 124435--124592 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 43
124425 TTGTATGTCA
* * * * *
124435 TCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTATTTCACAG
* *
124478 TCAGGACTGACCTTACCAAAAAGATCAAGAC--TATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTAT-TTCACAG
* * * *
124520 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTATTTCACAG
124559 TCAGGACTGACCTTACCAAAAAGATCAAGACTGT
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGT
124593 CTTGAAAGGT
Statistics
Matches: 87, Mismatches: 17, Indels: 22
0.69 0.13 0.17
Matches are distributed among these distances:
37 3 0.03
38 17 0.20
39 6 0.07
40 3 0.03
41 3 0.03
42 6 0.07
43 46 0.53
44 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTATTTCACAG
Left flanking sequence: Indices 123935 -- 124434
TCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGAT
TTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTT
GATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCA
CAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 124593 -- 125092
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGA
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTG
Found at i:124596 original size:81 final size:81
Alignment explanation
Indices: 124457--124620 Score: 310
Period size: 81 Copynumber: 2.0 Consensus size: 81
124447 TTATCAAAAA
124457 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
124522 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* *
124538 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
124603 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
124619 GG
1 GG
124621 AAAGGTCAAG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (81 bp):
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 123957 -- 124456
GGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGAC
CTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 124621 -- 125120
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCAT
Found at i:124606 original size:43 final size:43
Alignment explanation
Indices: 124477--124652 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
124467 GTATTTCACA
*
124477 GTCAGGACTGA-CCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 GTCAGGACTGATCCTT-CCAAAAAGATCAAGACTGTCTTGAAAG
* * * * * * * *
124520 ATCAGGACTGATTCTT-C----TGGTCAATACTGTATTTCACA-
1 GTCAGGACTGATCCTTCCAAAAAGATCAAGACTGT-CTTGAAAG
124558 GTCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTGAAAG
1 GTCAGGACTGATCCTT-CCAAAAAGATCAAGACTGTCTTGAAAG
* *** *
124601 GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAG
1 GTCAGGACTGATCCTTCCAAAAAGATCAAGACTGTCTTGAAAG
124644 GTCAGGACT
1 GTCAGGACT
124653 CATTCTTCTT
Statistics
Matches: 101, Mismatches: 22, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
37 3 0.03
38 19 0.19
39 5 0.05
42 5 0.05
43 63 0.62
44 6 0.06
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (43 bp):
GTCAGGACTGATCCTTCCAAAAAGATCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 123977 -- 124476
ATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACT
CATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 124653 -- 125152
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Found at i:124609 original size:19 final size:19
Alignment explanation
Indices: 124587--124652 Score: 78
Period size: 19 Copynumber: 3.2 Consensus size: 19
124577 AAAAGATCAA
124587 GACTGTCTTGAAAGGTCAG
1 GACTGTCTTGAAAGGTCAG
*
124606 GACTGATTCTTCTGGAAAGGTCAA
1 GACTG--TC-T-T-GAAAGGTCAG
124630 GACTGTCTTGAAAGGTCAG
1 GACTGTCTTGAAAGGTCAG
124649 GACT
1 GACT
124653 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 18 0.45
20 1 0.03
21 3 0.08
22 3 0.08
23 1 0.03
24 14 0.35
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (19 bp):
GACTGTCTTGAAAGGTCAG
Left flanking sequence: Indices 124087 -- 124586
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
Right flanking sequence: Indices 124653 -- 125152
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Found at i:124623 original size:24 final size:23
Alignment explanation
Indices: 124595--124680 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
124585 AAGACTGTCT
124595 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
*
124618 TGGAAAGGTCAAGACTG--TC-T-
1 T-GAAAGGTCAGGACTGATTCTTC
*
124638 TGAAAGGTCAGGACTCATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
124661 TTGAAAGGTCAGGACTGATT
1 -TGAAAGGTCAGGACTGATT
124681 ATGGAAGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (23 bp):
TGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 124095 -- 124594
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGAC
TGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCT
Right flanking sequence: Indices 124681 -- 125180
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGT
CAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
Found at i:124658 original size:43 final size:43
Alignment explanation
Indices: 124578--124677 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
124568 ACCTTACCAA
* *
124578 AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
124621 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
124664 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
124678 ATTATGGAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 124078 -- 124577
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 124678 -- 125177
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAA
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
Found at i:124801 original size:19 final size:19
Alignment explanation
Indices: 124777--124848 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
124767 ACCTTACCAA
124777 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
124796 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
124820 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
124836 AAAGGTCAGGACT
1 AAAGGTCAAGACT
124849 AATGAGAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 13 0.30
20 2 0.05
21 2 0.05
22 1 0.02
23 1 0.02
24 12 0.27
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 124277 -- 124776
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
TGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 124849 -- 125348
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
Found at i:124804 original size:43 final size:43
Alignment explanation
Indices: 124724--124848 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
124714 ATTAGTACTC
* * * *
124724 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
124767 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
124810 ATTCTT-CTGGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
124849 AATGAGAATG
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.06
43 48 0.67
44 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 124224 -- 124723
GACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 124849 -- 125348
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
Found at i:125020 original size:86 final size:85
Alignment explanation
Indices: 124914--125117 Score: 300
Period size: 86 Copynumber: 2.4 Consensus size: 85
124904 ACCTTATCAA
124914 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
1 AAAGGTCAAGACTGT-TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
124979 GATCAGGACTGATTCTTATTG
65 GATCAGGACTGATTCTTATTG
* * * *
125000 AAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGT-TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
* *
125065 GGTCAGGACTGATTCTTCTTG
65 GATCAGGACTGATTCTTATTG
* * *
125086 AAAGGTGAAGACTGTTTTGAAAGGTCAAGACT
1 AAAGGTCAAGACTGTTTTCAAA-GTCAGGACT
125118 CATTTGTATG
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 5 0.05
86 100 0.95
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (85 bp):
AAAGGTCAAGACTGTTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
ATCAGGACTGATTCTTATTG
Left flanking sequence: Indices 124414 -- 124913
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 125118 -- 125617
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
Found at i:125074 original size:19 final size:19
Alignment explanation
Indices: 125043--125117 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
125033 ACCTTACCAA
*
125043 AAAGATCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
125062 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* *
125086 AAAGGTGAAGACTGTTTTG
1 AAAGGTCAAGACTGTCTTG
125105 AAAGGTCAAGACT
1 AAAGGTCAAGACT
125118 CATTTGTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 28 0.62
24 17 0.38
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 124543 -- 125042
ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTAT
TGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 125118 -- 125617
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
Found at i:125075 original size:43 final size:42
Alignment explanation
Indices: 124895--125076 Score: 168
Period size: 43 Copynumber: 4.2 Consensus size: 42
124885 TTGTATGTCA
* * * *
124895 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
124938 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* *** * * * *
124980 ATCAGGACTGATTCTTA-TTGAAAGGTCAATACTGTATTTCACAG
1 -TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
125024 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
125067 TCAGGACTGA
1 TCAGGACTGA
125077 TTCTTCTTGA
Statistics
Matches: 108, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
42 14 0.13
43 85 0.79
44 9 0.08
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 124395 -- 124894
TTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAG
GACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 125077 -- 125576
TTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
Found at i:125097 original size:43 final size:43
Alignment explanation
Indices: 124914--125117 Score: 146
Period size: 43 Copynumber: 4.7 Consensus size: 43
124904 ACCTTATCAA
* ** ***
124914 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
* * * *
124957 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * * ***
125000 AAAGGTCAATACTGTATTTCACA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTG
*
125043 AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * *
125086 AAAGGTGAAGACTGTTTTGAAAGGTCAAGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
125118 CATTTGTATG
Statistics
Matches: 120, Mismatches: 35, Indels: 12
0.72 0.21 0.07
Matches are distributed among these distances:
42 12 0.10
43 97 0.81
44 11 0.09
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 124414 -- 124913
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 125118 -- 125617
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
Found at i:125123 original size:19 final size:19
Alignment explanation
Indices: 125083--125123 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
125073 CTGATTCTTC
* **
125083 TTGAAAGGTGAAGACTGTT
1 TTGAAAGGTCAAGACTCAT
125102 TTGAAAGGTCAAGACTCAT
1 TTGAAAGGTCAAGACTCAT
125121 TTG
1 TTG
125124 TATGTCATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAGGTCAAGACTCAT
Left flanking sequence: Indices 124583 -- 125082
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Right flanking sequence: Indices 125124 -- 125623
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
Found at i:125196 original size:43 final size:42
Alignment explanation
Indices: 125131--125384 Score: 215
Period size: 43 Copynumber: 6.2 Consensus size: 42
125121 TTGTATGTCA
* * * *
125131 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* * *
125174 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * * *
125212 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
125250 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** * ***
125293 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
*
125334 TCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
125377 TCAGGACT
1 TCAGGACT
125385 CATTCTTCTT
Statistics
Matches: 164, Mismatches: 32, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
33 10 0.06
35 1 0.01
37 5 0.03
38 19 0.12
39 5 0.03
41 35 0.21
42 4 0.02
43 85 0.52
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 124631 -- 125130
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 125385 -- 125884
CATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
Found at i:125293 original size:19 final size:19
Alignment explanation
Indices: 125269--125427 Score: 90
Period size: 19 Copynumber: 7.7 Consensus size: 19
125259 ACCTTACCAA
125269 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
125288 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
125312 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
125331 AAA--TC-AGTACTGACCTTACCAA
1 AAAGGTCAAG-ACTG-TCTT----G
125353 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
125372 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* *
125396 AAAGGTCAGGACTGTCTGG
1 AAAGGTCAAGACTGTCTTG
125415 AAAGGTCAAGACT
1 AAAGGTCAAGACT
125428 CATTTGTATG
Statistics
Matches: 110, Mismatches: 11, Indels: 38
0.69 0.07 0.24
Matches are distributed among these distances:
16 2 0.02
17 6 0.05
18 3 0.03
19 47 0.43
20 1 0.01
21 1 0.01
22 4 0.04
23 4 0.04
24 40 0.36
25 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 124769 -- 125268
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 125428 -- 125927
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAGGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
Found at i:125350 original size:84 final size:84
Alignment explanation
Indices: 125150--125412 Score: 330
Period size: 84 Copynumber: 3.2 Consensus size: 84
125140 ACCTTATCAA
* * *
125150 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A
1 AAAGGTCAAGACTGTC-TTCAAA-TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
125212 --TCAGGACTGATTCTTC-T-
64 GGTCAGGACTGATTCTTCTTG
* *
125229 ---GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGT-CTTCA-AATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
*
125291 GGTCAGGACTGATTTTTCTTG
64 GGTCAGGACTGATTCTTCTTG
* *
125312 AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AAAGGTCAAGACTGTCTTCAAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
*
125377 TCAGGACTCATTCTTCTTG
66 TCAGGACTGATTCTTCTTG
*
125396 AAAGGTCAGGACTGTCT
1 AAAGGTCAAGACTGTCT
125413 GGAAAGGTCA
Statistics
Matches: 159, Mismatches: 13, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
76 48 0.30
77 3 0.02
79 1 0.01
81 15 0.09
82 1 0.01
84 76 0.48
85 3 0.02
86 12 0.08
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (84 bp):
AAAGGTCAAGACTGTCTTCAAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 124650 -- 125149
ACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTT
GAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 125413 -- 125912
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
Found at i:125418 original size:43 final size:43
Alignment explanation
Indices: 125269--125431 Score: 197
Period size: 43 Copynumber: 3.8 Consensus size: 43
125259 ACCTTACCAA
* *
125269 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * ***
125312 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT-CTTG
125353 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * *
125396 AAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
125432 TGTATGTCAT
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
40 2 0.02
41 32 0.32
43 64 0.63
44 3 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 124769 -- 125268
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 125432 -- 125931
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAGGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
Found at i:125481 original size:310 final size:312
Alignment explanation
Indices: 124917--125610 Score: 1203
Period size: 310 Copynumber: 2.2 Consensus size: 312
124907 TTATCAAAAA
* * * * *
124917 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* * *
124982 CAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
66 CAGGACTGATTCTTATTGAAAGGTCAAGACTGTACTTCACAATCAGGACTGACCTTACCAAAAAG
* * * *
125047 ATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTC
131 ATCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTGTCTGGAAAGGTC
125112 AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
196 AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
125177 GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
261 GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
*
125229 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* * * *
125294 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGT-CTTGA-AATCAGTACTGACCTTACCAAAAAG
66 CAGGACTGATTCTTATTGAAAGGTCAAGACTGTACTTCACAATCAGGACTGACCTTACCAAAAAG
* *
125357 GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTC
131 ATCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTGTCTGGAAAGGTC
125422 AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
196 AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
125487 GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
261 GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
125539 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
125604 CAGGACT
66 CAGGACT
125611 TTTGATGGAA
Statistics
Matches: 362, Mismatches: 20, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
310 270 0.75
311 3 0.01
312 89 0.25
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (312 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTATTGAAAGGTCAAGACTGTACTTCACAATCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTGTCTGGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Left flanking sequence: Indices 124417 -- 124916
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 125611 -- 126110
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCT
TATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
Found at i:125506 original size:43 final size:42
Alignment explanation
Indices: 125441--125610 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
125431 TTGTATGTCA
* * *
125441 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
125484 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
125522 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
125560 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
125603 TCAGGACT
1 TCAGGACT
125611 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 52 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 124941 -- 125440
GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGT
CAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 125611 -- 126110
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCT
TATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
Found at i:125828 original size:76 final size:79
Alignment explanation
Indices: 125718--125876 Score: 234
Period size: 76 Copynumber: 2.0 Consensus size: 79
125708 TTATCAAAAA
125718 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
125780 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
125794 GGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
125859 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
125875 GG
1 GG
125877 AAAGGTCAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.70
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 125218 -- 125717
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCT
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 125877 -- 126376
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAT
GTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATG
GATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATCAATTGGTCAGGGTCA
ACACTAATGGCATTGGTTGATGGATAATGGCATCTCCTTTTTTTG
Found at i:125858 original size:19 final size:19
Alignment explanation
Indices: 125834--125908 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
125824 ACCTTACCAA
125834 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
125853 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
125877 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
125896 AAAGGTCAGGACT
1 AAAGGTCAAGACT
125909 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 125334 -- 125833
TCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 125909 -- 126408
CATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCA
TGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTG
GTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTC
CATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGCA
TCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCT
Found at i:125866 original size:43 final size:42
Alignment explanation
Indices: 125674--125908 Score: 197
Period size: 43 Copynumber: 5.7 Consensus size: 42
125664 CCAAAAATGG
* *
125674 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* *
125715 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
125758 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * * *
125793 --TGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* ***
125834 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
125877 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
125909 CATTCTTCTT
Statistics
Matches: 154, Mismatches: 24, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
33 10 0.06
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 9 0.06
43 86 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 125174 -- 125673
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 125909 -- 126408
CATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCA
TGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTG
GTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTC
CATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGCA
TCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCT
Found at i:125914 original size:43 final size:43
Alignment explanation
Indices: 125834--125932 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
125824 ACCTTACCAA
*
125834 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
125877 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
125920 AAAGGTCAGGACT
1 AAAGGTCAAGACT
125933 CCTTATGGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 125334 -- 125833
TCAGTACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 125933 -- 126432
CCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTA
CAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTT
TTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATCAATTGG
TCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGG
CATACAATGACAATTGATCCTTTCCATCAACCATCAAACCTTGAT
Found at i:125933 original size:24 final size:24
Alignment explanation
Indices: 125848--125933 Score: 101
Period size: 24 Copynumber: 3.8 Consensus size: 24
125838 GTCAAGACTG
*
125848 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
125872 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
125891 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
125915 TCTTGAAAGGTCAGGACTC
1 TCTTGAAAGGTCAGGACTC
125934 CTTATGGAAG
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
19 14 0.28
20 1 0.02
21 1 0.02
23 1 0.02
24 33 0.66
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 125348 -- 125847
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCT
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 125934 -- 126433
CTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTAC
AAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTT
TTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATCAATTGGT
CAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGC
ATACAATGACAATTGATCCTTTCCATCAACCATCAAACCTTGATG
Found at i:125949 original size:20 final size:20
Alignment explanation
Indices: 125894--125972 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 20
125884 AAGACTGTCT
*
125894 TGAAAGGTCAGGACTCATTCTTCT
1 TGAAAGGTCAGGACTC---CTT-A
125918 TGAAAGGTCAGGACTCCTTA
1 TGAAAGGTCAGGACTCCTTA
* * *
125938 TGGAAGGACAGGAC-CCTTT
1 TGAAAGGTCAGGACTCCTTA
125957 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
125973 ATGACAATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.33
20 13 0.27
21 3 0.06
24 16 0.33
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (20 bp):
TGAAAGGTCAGGACTCCTTA
Left flanking sequence: Indices 125394 -- 125893
TGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 125973 -- 126472
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATT
GGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTT
CCATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGC
ATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACC
TTGATGTCCTGAAACAACCAAAAGCTTTTCATAAGCACATCCTTC
Found at i:125963 original size:19 final size:20
Alignment explanation
Indices: 125893--125972 Score: 90
Period size: 24 Copynumber: 3.9 Consensus size: 20
125883 CAAGACTGTC
125893 TTGAAAGGTCAGGACTCATTCTT
1 TTGAAAGGTCAGGACTC---CTT
125916 CTTGAAAGGTCAGGACTCCTT
1 -TTGAAAGGTCAGGACTCCTT
* * *
125937 ATGGAAGGACAGGAC-CCTT
1 TTGAAAGGTCAGGACTCCTT
125956 TTGAAAGGTCAGGACTC
1 TTGAAAGGTCAGGACTC
125973 ATGACAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.33
20 13 0.27
21 3 0.06
24 17 0.35
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TTGAAAGGTCAGGACTCCTT
Left flanking sequence: Indices 125393 -- 125892
TTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTC
Right flanking sequence: Indices 125973 -- 126472
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATT
GGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTT
CCATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGC
ATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACC
TTGATGTCCTGAAACAACCAAAAGCTTTTCATAAGCACATCCTTC
Found at i:126007 original size:28 final size:28
Alignment explanation
Indices: 125984--126165 Score: 348
Period size: 28 Copynumber: 6.5 Consensus size: 28
125974 TGACAATTGT
125984 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
126012 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
126040 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
126068 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
126096 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
126124 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAACAA
126152 ATGCCATTAGTACT
1 ATGCCATTAGTACT
126166 TTCCATATGC
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 151 0.99
29 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 125484 -- 125983
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTT
GATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 126166 -- 126665
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCT
TTCCATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATG
GCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAA
CCTTGATGTCCTGAAACAACCAAAAGCTTTTCATAAGCACATCCTTCAAATGTGTGCTGACCTTT
ACCTTTCAATTGCACAAAGCACGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAG
GTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTTTGTGGGCTTTGCTCGTCAAAATGACGTGACGTT
CAGTGATCGAACCGAGAGAAAGGAAGCTGAAAGTGGTGCTATGGA
Found at i:128952 original size:28 final size:28
Alignment explanation
Indices: 128761--128942 Score: 348
Period size: 28 Copynumber: 6.5 Consensus size: 28
128751 GCATATGGAA
128761 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
128789 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
128817 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
128845 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
128873 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
128901 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
128929 AGTACTAATGGCAT
1 AGTACTAATGGCAT
128943 ACAATTGTCA
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 151 0.99
29 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 128261 -- 128760
ATTCCAGTTCAAGTTAGGGCCCTTATTTACCAATAAGTAGTAGGTAGGAACGGATAGCAAAGTAA
GTTAGATAGTCATAGCTTGTTCTAGGTCCCATTGAAGTTGACCCGAAGAGGCGAGATAAGGGCAT
ATACAAGGGTAGAGGCACTGGTTTAACCCCCGGGCGTTTCACAACCTGCGGGGACGGATCCGGTT
CCACCGCAAAGGCAGGAGTTGAAAAAACCATACTGAAAAACATGAATACCAAAAACAGGAAAAAA
ACTCAGGTAGAAGCACAGCCGGGCCATACGAGAAAGCGAAAGCACTCGCAAAGCGAAGCTTCAGG
GACAACTTTGACTTTCAGGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTAT
GCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATG
GCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 128943 -- 129442
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
Found at i:129000 original size:20 final size:19
Alignment explanation
Indices: 128952--129005 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
128942 TACAATTGTC
*
128952 ATGAGTCCTGACCTTTCAA
1 ATGAGTCCTGACCTTCCAA
* * *
128971 AAGGGTCCTGTCCTTCCATA
1 ATGAGTCCTGACCTTCCA-A
128991 ATGAGTCCTGACCTT
1 ATGAGTCCTGACCTT
129006 TCAAGAAGAA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (19 bp):
ATGAGTCCTGACCTTCCAA
Left flanking sequence: Indices 128452 -- 128951
GGTTCCACCGCAAAGGCAGGAGTTGAAAAAACCATACTGAAAAACATGAATACCAAAAACAGGAA
AAAAACTCAGGTAGAAGCACAGCCGGGCCATACGAGAAAGCGAAAGCACTCGCAAAGCGAAGCTT
CAGGGACAACTTTGACTTTCAGGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATT
GTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGG
TATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTT
GTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
Right flanking sequence: Indices 129006 -- 129505
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
Found at i:129022 original size:24 final size:24
Alignment explanation
Indices: 128990--129035 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
128980 GTCCTTCCAT
128990 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
129014 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
129036 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 128490 -- 128989
GAAAAACATGAATACCAAAAACAGGAAAAAAACTCAGGTAGAAGCACAGCCGGGCCATACGAGAA
AGCGAAAGCACTCGCAAAGCGAAGCTTCAGGGACAACTTTGACTTTCAGGACATCAAGGTTTGAT
GGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTAT
CCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATAC
AATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 129036 -- 129535
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
Found at i:129174 original size:43 final size:42
Alignment explanation
Indices: 129113--129282 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
129103 TTCCATCAAA
**
129113 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
129156 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* * *
129194 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
129232 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
129275 AGTACTGA
1 AGTCCTGA
129283 TGACATACAA
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.55
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 128613 -- 129112
GTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATG
CCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAG
TACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 129283 -- 129782
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
Done.