Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 20 of 20
Found at i:584603 original size:19 final size:19
Alignment explanation
Indices: 584579--584857 Score: 120
Period size: 19 Copynumber: 13.7 Consensus size: 19
584569 ACCTGACCAA
584579 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
584598 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
584622 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
584641 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
584665 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
584684 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
584706 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
584725 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
584745 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
584763 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
584787 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
584806 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
584826 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
584844 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
584858 ATTATGGAAG
Statistics
Matches: 198, Mismatches: 32, Indels: 60
0.68 0.11 0.21
Matches are distributed among these distances:
17 10 0.05
19 106 0.54
20 5 0.03
21 13 0.07
22 13 0.07
23 4 0.02
24 47 0.24
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 584079 -- 584578
GTCACGAGCAAAGTGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAGGG
GACAACTTTGCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGA
AGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATA
CAATTGCAATTTTGGTATGGTCAGCACTAATGGCATCTAATTGCAACCTTTCCTTTCCATGAGTT
TGTGAGCTTATGGAAAGGTTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCA
GGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTACAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 584858 -- 585357
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTA
TGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTG
Found at i:584624 original size:24 final size:23
Alignment explanation
Indices: 584579--584678 Score: 99
Period size: 24 Copynumber: 4.6 Consensus size: 23
584569 ACCTGACCAA
584579 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
584598 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCT-G
584622 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
* *
584641 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGATTCTTC-TG
584665 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
584679 TCTTGAAATC
Statistics
Matches: 66, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 4 0.06
22 4 0.06
23 1 0.02
24 29 0.44
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTCTTCTG
Left flanking sequence: Indices 584079 -- 584578
GTCACGAGCAAAGTGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAGGG
GACAACTTTGCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGA
AGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATA
CAATTGCAATTTTGGTATGGTCAGCACTAATGGCATCTAATTGCAACCTTTCCTTTCCATGAGTT
TGTGAGCTTATGGAAAGGTTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCA
GGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTACAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 584679 -- 585178
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
Found at i:584998 original size:43 final size:42
Alignment explanation
Indices: 584935--585104 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
584925 TTGTATGTCA
* * * *
584935 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
584978 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
585016 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
*
585054 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
585097 TCAGGACT
1 TCAGGACT
585105 TTTGATGGAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 20 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 51 0.52
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 584435 -- 584934
TACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTATTTACAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 585105 -- 585604
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATT
AGTACTCACCATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TGAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
Found at i:585211 original size:24 final size:22
Alignment explanation
Indices: 585182--585244 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
585172 GTCAAGACTG
585182 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTC--TCT
* *
585206 TCTTGAAAGGTGAAGA--CTCT
1 TCTTGAAAGGTCAGGACTCTCT
585226 T-TTGAAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGGACTCT
585245 GAAAGGTCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 12 0.36
20 4 0.12
21 2 0.06
22 1 0.03
24 14 0.42
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTCTCT
Left flanking sequence: Indices 584682 -- 585181
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 585245 -- 585744
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATT
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACC
ATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
Found at i:585242 original size:19 final size:19
Alignment explanation
Indices: 585167--585258 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 19
585157 ACCAAAAATG
* * *
585167 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAGGACTCTTTT
585186 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGA--C--TCTT-TT
* *
585210 GAAAGGTGAAGACTCTTTT
1 GAAAGGTCAGGACTCTTTT
585229 GAAAGGTCAGGACTC---T
1 GAAAGGTCAGGACTCTTTT
585245 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
585259 AATGAGAATG
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 15 0.25
19 26 0.43
20 4 0.07
21 1 0.02
22 1 0.02
23 2 0.03
24 12 0.20
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (19 bp):
GAAAGGTCAGGACTCTTTT
Left flanking sequence: Indices 584667 -- 585166
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 585259 -- 585758
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATTTTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
Found at i:585249 original size:16 final size:16
Alignment explanation
Indices: 585228--585258 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
585218 AAGACTCTTT
585228 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
585244 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
585259 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 584728 -- 585227
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTT
Right flanking sequence: Indices 585259 -- 585758
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATTTTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
Found at i:585387 original size:28 final size:28
Alignment explanation
Indices: 585312--585438 Score: 165
Period size: 28 Copynumber: 4.6 Consensus size: 28
585302 TTGCAATTGT
585312 ATGCCATTAGTACTCACTTGAC-AACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* *
585339 ATTG-TA-T-GTCTCTCACTTGACAAACAA
1 A-TGCCATTAGT-ACTCACTTGACAAACAA
585366 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
585394 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
*
585422 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
585439 CATTTTTGAA
Statistics
Matches: 88, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
25 2 0.02
26 13 0.15
27 11 0.12
28 60 0.68
29 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 584812 -- 585311
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGT
Right flanking sequence: Indices 585439 -- 585938
CATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
Found at i:585627 original size:19 final size:23
Alignment explanation
Indices: 585603--585658 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 23
585593 ACCTTACCAA
585603 AAAGGTCAAGACTG-TC-T-T-G
1 AAAGGTCAAGACTGATCTTCTGG
*
585622 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGA-TCTTCTGG
585646 AAAGGTCAAGACT
1 AAAGGTCAAGACT
585659 ATGAAAGGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 13 0.43
21 2 0.07
22 1 0.03
23 1 0.03
24 13 0.43
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (23 bp):
AAAGGTCAAGACTGATCTTCTGG
Left flanking sequence: Indices 585103 -- 585602
CTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAA
GGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGA
CTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCA
TTAGTACTCACCATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTGAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 585659 -- 586158
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAA
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATA
CCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCC
Found at i:585658 original size:43 final size:43
Alignment explanation
Indices: 585550--585636 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
585540 ATTAGTACTC
* * *
585550 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
585593 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
585636 A
1 A
585637 TTCTTCTGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.10
43 36 0.90
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 585050 -- 585549
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATT
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACC
ATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 585637 -- 586136
TTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACC
Found at i:585666 original size:16 final size:16
Alignment explanation
Indices: 585645--585675 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
585635 GATTCTTCTG
585645 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
585661 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
585676 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 585145 -- 585644
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGTCATTAGTACTCACCATTTTTGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 585676 -- 586175
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAG
GTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCAC
CATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
Found at i:585784 original size:43 final size:43
Alignment explanation
Indices: 585721--585933 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
585711 TTGTATGTCA
* * *
585721 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
585764 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * * *
585802 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
585840 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
585883 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
585926 TCAGGACT
1 TCAGGACT
585934 TTTGATGGAA
Statistics
Matches: 135, Mismatches: 22, Indels: 26
0.74 0.12 0.14
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.04
41 1 0.01
42 5 0.04
43 91 0.67
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 585221 -- 585720
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGTCATTAGTACTCACCATTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTGAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 585934 -- 586433
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTC
ACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAA
TCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACT
CGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCG
CTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAGCACACAACTATAGGCAGAGCCAAAGCAA
AGTCTGATAAGCTTTGCGAGTTCTTTGTGCAATCACTCACAAAGC
Found at i:585871 original size:24 final size:24
Alignment explanation
Indices: 585839--585915 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
585829 GTATTTCACA
*
585839 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
585863 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
585882 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
585906 GTCAAGACTG
1 GTCAAGACTG
585916 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 585339 -- 585838
ATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGTCATTAGTACTCACCATTTTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
Right flanking sequence: Indices 585916 -- 586415
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAA
GCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCT
CGTGACGTGAACGCTTCGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAGCACACAACTA
TAGGCAGAGCCAAAGCAAAGTCTGATAAGCTTTGCGAGTTCTTTG
Found at i:585890 original size:19 final size:19
Alignment explanation
Indices: 585820--585890 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
585810 GATTCTTCTG
* *
585820 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
585839 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
585862 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
585882 GTCAGGACT
1 GTCAAGACT
585891 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 585320 -- 585819
AGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATTTTTGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTGATTATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
GAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 585891 -- 586390
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATT
AGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCT
TTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTAC
GCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCGTGCTTTGTG
CAATTGAAAGGTCAGCACACAACTATAGGCAGAGCCAAAGCAAAG
Found at i:594217 original size:22 final size:22
Alignment explanation
Indices: 594190--594251 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
594180 AGTGACCTTA
594190 TGGAAAGGTCAGGACTCATTTC
1 TGGAAAGGTCAGGACTCATTTC
* *
594212 TTGAAAGGTGAGGA--C-TTTC
1 TGGAAAGGTCAGGACTCATTTC
* *
594231 TGGAAAGATCAAGACTCATTT
1 TGGAAAGGTCAGGACTCATTT
594252 GTATGTCATC
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
19 14 0.45
20 1 0.03
21 1 0.03
22 15 0.48
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (22 bp):
TGGAAAGGTCAGGACTCATTTC
Left flanking sequence: Indices 593690 -- 594189
TAACGAATATGTATTTGATCCCGATCCATATGCCTTTTCTCTTTAGAAAGACATTTGAAACATTA
ACCATATGCCAGGAACCAGATTGGCACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAGC
TGAGCTATCCCGACCATCCTCTATACATTATCCTACTGGAGGACATGGATCTATGTCAATTCATT
GAAAGAAAGGTACTCCAATTACAAATACGTCCTGGGTCTTTGGATTTCAAAAAAAAACCTTTCTT
TGTTTGTAAGGGCCATAATGGGATTCCTTTGACTTTGATATCCTTGGATAATAATACACATACAT
AACTATGTTATGTTCGTTTGGACATTGAAAGCCAAAGGAGTGTGCTTTGCTTCTCTTTTGATGAG
CTAATATCAGACAAAATGGTATGCACTTTTTTTTGGAAGCAAGAATGGCATACAATTTGTTGTAT
AGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTA
Right flanking sequence: Indices 594252 -- 594751
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:594381 original size:19 final size:19
Alignment explanation
Indices: 594359--594429 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
594349 GATTCTTCTG
*
594359 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
594378 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
594401 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
594421 GTCAGGACT
1 GTCAAGACT
594430 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 593859 -- 594358
AGGACATGGATCTATGTCAATTCATTGAAAGAAAGGTACTCCAATTACAAATACGTCCTGGGTCT
TTGGATTTCAAAAAAAAACCTTTCTTTGTTTGTAAGGGCCATAATGGGATTCCTTTGACTTTGAT
ATCCTTGGATAATAATACACATACATAACTATGTTATGTTCGTTTGGACATTGAAAGCCAAAGGA
GTGTGCTTTGCTTCTCTTTTGATGAGCTAATATCAGACAAAATGGTATGCACTTTTTTTTGGAAG
CAAGAATGGCATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTG
ACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 594430 -- 594929
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
Found at i:594410 original size:24 final size:24
Alignment explanation
Indices: 594378--594454 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
594368 GTCTTTCACA
*
594378 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
594402 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
594421 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
594445 GTCAAGACTG
1 GTCAAGACTG
594455 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 593878 -- 594377
ATTCATTGAAAGAAAGGTACTCCAATTACAAATACGTCCTGGGTCTTTGGATTTCAAAAAAAAAC
CTTTCTTTGTTTGTAAGGGCCATAATGGGATTCCTTTGACTTTGATATCCTTGGATAATAATACA
CATACATAACTATGTTATGTTCGTTTGGACATTGAAAGCCAAAGGAGTGTGCTTTGCTTCTCTTT
TGATGAGCTAATATCAGACAAAATGGTATGCACTTTTTTTTGGAAGCAAGAATGGCATACAATTT
GTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGG
ACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
Right flanking sequence: Indices 594455 -- 594954
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
Found at i:594410 original size:119 final size:122
Alignment explanation
Indices: 594260--594758 Score: 433
Period size: 119 Copynumber: 4.1 Consensus size: 122
594250 TTGTATGTCA
* *
594260 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
* *
594325 GATCAAGACTATC-TG-A-TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA-G
66 GGTCAAGACTATCTTGAAGTCAGGACTGATTCTTCTGGTCAAGACTGTC-TTCAAAGG
594379 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
* *
594444 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
66 GGTCAAGACTATCTTG-AA-GTCAGGACTGATTCTTCTGGTCAAGACTGTCTTCAAAGG
* * ** * * * *
594503 TCAGGACTGA-TTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAAAA
1 TCAGGACTGACCTTATC-AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
* * ** * * *
594565 AGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAAAAAGATCAAGACTATC-T----G
65 AGGTCAAGACTATC-TT-GAAGTCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTCAAAG
*
594624 A
122 G
* * * *
594625 TCAGGACTGA--TTCTTC----TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAA
1 TCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
* *
594684 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
65 AGGTCAAGACTATCTTG-AA-GTCAGGACTGATTCTTC-T----GGTCAAGACTGTCTTCAAAGG
594749 TCAGGACTGA
1 TCAGGACTGA
594759 TTATGGAAGG
Statistics
Matches: 316, Mismatches: 34, Indels: 55
0.78 0.08 0.14
Matches are distributed among these distances:
117 13 0.04
118 9 0.03
119 127 0.40
120 7 0.02
121 6 0.02
122 56 0.18
123 18 0.06
124 68 0.22
126 1 0.00
127 11 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (122 bp):
TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTATCTTGAAGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTCAAAGG
Left flanking sequence: Indices 593760 -- 594259
ATGCCAGGAACCAGATTGGCACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAGCTGAGC
TATCCCGACCATCCTCTATACATTATCCTACTGGAGGACATGGATCTATGTCAATTCATTGAAAG
AAAGGTACTCCAATTACAAATACGTCCTGGGTCTTTGGATTTCAAAAAAAAACCTTTCTTTGTTT
GTAAGGGCCATAATGGGATTCCTTTGACTTTGATATCCTTGGATAATAATACACATACATAACTA
TGTTATGTTCGTTTGGACATTGAAAGCCAAAGGAGTGTGCTTTGCTTCTCTTTTGATGAGCTAAT
ATCAGACAAAATGGTATGCACTTTTTTTTGGAAGCAAGAATGGCATACAATTTGTTGTATAGTCA
GTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTTCTGGAAAGATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 594759 -- 595258
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:594465 original size:19 final size:19
Alignment explanation
Indices: 594441--594543 Score: 93
Period size: 19 Copynumber: 5.2 Consensus size: 19
594431 ACCTTACCAA
594441 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
594460 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
594480 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
594498 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
594522 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
594541 AAA
1 AAA
594544 TCAGTACTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.06
19 41 0.61
21 4 0.06
24 18 0.27
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 593941 -- 594440
ACCTTTCTTTGTTTGTAAGGGCCATAATGGGATTCCTTTGACTTTGATATCCTTGGATAATAATA
CACATACATAACTATGTTATGTTCGTTTGGACATTGAAAGCCAAAGGAGTGTGCTTTGCTTCTCT
TTTGATGAGCTAATATCAGACAAAATGGTATGCACTTTTTTTTGGAAGCAAGAATGGCATACAAT
TTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCA
GGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 594544 -- 595043
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
Found at i:594706 original size:19 final size:19
Alignment explanation
Indices: 594682--594757 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
594672 ACCTTACCAA
594682 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
594701 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
594725 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
594744 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
594758 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 594182 -- 594681
TGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 594758 -- 595257
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:594757 original size:43 final size:43
Alignment explanation
Indices: 594276--594760 Score: 324
Period size: 43 Copynumber: 11.9 Consensus size: 43
594266 CTCACCTTAT
* **
594276 CAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTAC
1 CAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-C
* *
594319 CAAAAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTT-
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* * * * *
594356 C----TGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTAT
1 CAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-C
* **
594395 CAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTAC
1 CAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-C
594438 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* *
594480 C----TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
*** * * *
594519 TTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTAT
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C
* **
594560 CAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTAC
1 CAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-C
* *
594603 CAAAAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTT-
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* ** *
594640 C----TGGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTAC
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C
594679 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
***
594722 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
594761 ATGGAAGGAC
Statistics
Matches: 358, Mismatches: 47, Indels: 74
0.75 0.10 0.15
Matches are distributed among these distances:
33 22 0.06
34 1 0.00
35 1 0.00
36 1 0.00
37 9 0.03
38 71 0.20
39 12 0.03
40 2 0.01
41 27 0.08
42 13 0.04
43 192 0.54
44 7 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 593776 -- 594275
TGGCACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAGCTGAGCTATCCCGACCATCCTC
TATACATTATCCTACTGGAGGACATGGATCTATGTCAATTCATTGAAAGAAAGGTACTCCAATTA
CAAATACGTCCTGGGTCTTTGGATTTCAAAAAAAAACCTTTCTTTGTTTGTAAGGGCCATAATGG
GATTCCTTTGACTTTGATATCCTTGGATAATAATACACATACATAACTATGTTATGTTCGTTTGG
ACATTGAAAGCCAAAGGAGTGTGCTTTGCTTCTCTTTTGATGAGCTAATATCAGACAAAATGGTA
TGCACTTTTTTTTGGAAGCAAGAATGGCATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTT
GTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTC
TGGAAAGATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
Right flanking sequence: Indices 594761 -- 595260
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
Found at i:594898 original size:43 final size:42
Alignment explanation
Indices: 594835--595004 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
594825 TTGTATGTCA
* * * *
594835 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
594878 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
594916 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
594954 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
594997 TCAGGACT
1 TCAGGACT
595005 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 594335 -- 594834
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCA
AGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 595005 -- 595504
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
Found at i:594943 original size:291 final size:287
Alignment explanation
Indices: 594233--595004 Score: 1080
Period size: 284 Copynumber: 2.7 Consensus size: 287
594223 GGACTTTCTG
594233 GAAAGATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
1 GAAAG-TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
594298 CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
65 CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
* *
594363 AGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGG
130 AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGG
* *** *
594427 ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACT
194 ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGAAGGACAAGACT
*** * ** *
594492 GTCTTGAAAGGTCAGGACTGATTTTTCTT
259 CAATTGAAAGGTCAGGACTGATCTCACCT
* * *
594521 GAAAGGTCAAGACT-GTCTTG-A---AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTT
1 GAAA-GTCAAGACTCAT-TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
594581 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
64 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
594646 AAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
129 AAGACTGTCTTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
** *** *
594710 GACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
193 GACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTAT-GAAGGACAAG
** * * *
594774 AC-CAATTGCAATTGT-ATGCCATTAGTACTCACCT
256 ACTCAATTG-AAAGGTCAGGAC-TGA-T-CTCACCT
*
594808 GACCA-TACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
1 GA-AAGT-CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
594872 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
64 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
*
594937 AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
129 AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
595002 ACT
194 ACT
595005 TTTGATGGAA
Statistics
Matches: 433, Mismatches: 33, Indels: 33
0.87 0.07 0.07
Matches are distributed among these distances:
283 6 0.01
284 204 0.47
285 17 0.04
286 2 0.00
287 17 0.04
288 18 0.04
289 1 0.00
291 167 0.39
292 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (287 bp):
GAAAGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGAAGGACAAGACTCA
ATTGAAAGGTCAGGACTGATCTCACCT
Left flanking sequence: Indices 593733 -- 594232
TAGAAAGACATTTGAAACATTAACCATATGCCAGGAACCAGATTGGCACTGGTGACACGAGGATT
TTCAGTCCTCTGCTCTACCAGCTGAGCTATCCCGACCATCCTCTATACATTATCCTACTGGAGGA
CATGGATCTATGTCAATTCATTGAAAGAAAGGTACTCCAATTACAAATACGTCCTGGGTCTTTGG
ATTTCAAAAAAAAACCTTTCTTTGTTTGTAAGGGCCATAATGGGATTCCTTTGACTTTGATATCC
TTGGATAATAATACACATACATAACTATGTTATGTTCGTTTGGACATTGAAAGCCAAAGGAGTGT
GCTTTGCTTCTCTTTTGATGAGCTAATATCAGACAAAATGGTATGCACTTTTTTTTGGAAGCAAG
AATGGCATACAATTTGTTGTATAGTCAGTACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCT
TATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTCTG
Right flanking sequence: Indices 595005 -- 595504
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
Found at i:595232 original size:43 final size:43
Alignment explanation
Indices: 595171--595298 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
595161 ATTAGTACTC
*
595171 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
595214 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
* * *
595257 ACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
595299 TTTGATGGAA
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 5 0.06
43 75 0.94
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Left flanking sequence: Indices 594671 -- 595170
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 595299 -- 595798
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Found at i:595236 original size:24 final size:24
Alignment explanation
Indices: 595171--595280 Score: 87
Period size: 19 Copynumber: 5.0 Consensus size: 24
595161 ATTAGTACTC
595171 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* *
595195 -TCTT-TC--AAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
595214 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
595238 -TCTT-TC--AAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTG
* *
595257 ACCTGACCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
595281 TCTTGAAAGG
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
19 17 0.27
20 11 0.17
21 3 0.05
22 4 0.06
23 12 0.19
24 17 0.27
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 594671 -- 595170
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 595281 -- 595780
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGT
Found at i:595237 original size:113 final size:116
Alignment explanation
Indices: 594992--595237 Score: 306
Period size: 119 Copynumber: 2.1 Consensus size: 116
594982 GACTGTCTTG
*
594992 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
595056 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
595111 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * *
595175 TATC-AA-AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
595224 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
595238 TCTTTCAAAG
Statistics
Matches: 114, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.34
114 5 0.04
116 2 0.02
119 62 0.54
120 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 594492 -- 594991
GTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 595238 -- 595737
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
Found at i:595385 original size:19 final size:19
Alignment explanation
Indices: 595361--595433 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
595351 ACCAAAAATG
595361 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTGTCTT
*
595380 GAAAGGTCAGGACTGATTCTTCT
1 GAAAGGTCAAGACTG--TC-T-T
595403 GGAAAGGTCAAGAC--TC-T
1 -GAAAGGTCAAGACTGTCTT
*
595420 GAAAGGTCAGGACT
1 GAAAGGTCAAGACT
595434 AATGAGAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 14 0.31
20 2 0.04
21 2 0.04
22 1 0.02
23 1 0.02
24 12 0.27
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (19 bp):
GAAAGGTCAAGACTGTCTT
Left flanking sequence: Indices 594861 -- 595360
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 595434 -- 595933
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAAC
Found at i:595543 original size:43 final size:43
Alignment explanation
Indices: 595480--595678 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 43
595470 TTGTATGTCA
* * *
595480 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
595523 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
595561 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
*
595599 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
595642 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
595679 GAAAGGTCAG
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
33 10 0.08
35 1 0.01
37 5 0.04
38 20 0.16
39 5 0.04
41 1 0.01
43 84 0.67
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 594980 -- 595479
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 595679 -- 596178
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAG
ACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAG
TACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGA
CAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGATTCATGAGCCACTTT
GATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTGACGTGACAT
GACGTCAAAGTGACGTTGGGGCAAGAGTGGCTTCGCTCCTACACC
Found at i:595649 original size:19 final size:19
Alignment explanation
Indices: 595579--595649 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
595569 GATTCTTCTG
*
595579 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
595598 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
595621 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
595641 GTCAGGACT
1 GTCAAGACT
595650 AACCTGACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 595079 -- 595578
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 595650 -- 596149
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAAT
GCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACA
ACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAA
TGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTT
GACTTTGAAAATGGCTCGTGACGTGACATGACGTCAAAGTGACGT
Found at i:595688 original size:43 final size:43
Alignment explanation
Indices: 595578--595692 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
595568 TGATTCTTCT
* * * * *
595578 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
*
595621 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
*
595664 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
595693 TTTGATGGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 4 0.06
43 61 0.94
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (43 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
Left flanking sequence: Indices 595078 -- 595577
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 595693 -- 596192
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCA
AAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGA
TGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAG
CAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTGACGTGACATGACGTCAAAGTGAC
GTTGGGGCAAGAGTGGCTTCGCTCCTACACCTTCCTACACGAAGG
Found at i:595934 original size:28 final size:28
Alignment explanation
Indices: 595824--595924 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
595814 TTGCAATTGT
595824 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
595852 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
595880 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
*
595908 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
595925 CATACCAACA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
28 69 0.97
29 2 0.03
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 595324 -- 595823
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 595925 -- 596424
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGAT
TCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGC
TCGTGACGTGACATGACGTCAAAGTGACGTTGGGGCAAGAGTGGCTTCGCTCCTACACCTTCCTA
CACGAAGGGCTGCTCTGACTCTGAGGAGTTCTCTTTCCCTGTTGCTAGAGTGATTTCTTCCTTCC
TAGTTCTTTCTCTCCTAGTTCTTCTCCGAGGACTGCATTTAACCAACCGTCTATGAACTTCTAAG
ACTGATTTCTTGTTCTCTGATCTTTCATGCCTGACTCTTTCATTCTGTAACAAAAGAAAAGAGAT
AGGCAGGCACCTATTATAGATAATTAGTGGTTTAGCTGTATTGCT
Found at i:599545 original size:21 final size:21
Alignment explanation
Indices: 599521--599560 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
599511 ATGTAGCTAG
599521 GCCAGTCAAAGACAAGTAGAA
1 GCCAGTCAAAGACAAGTAGAA
* *
599542 GCCAGTTAAAGACGAGTAG
1 GCCAGTCAAAGACAAGTAG
599561 GCAGGGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.17, G:0.28, T:0.12
Consensus pattern (21 bp):
GCCAGTCAAAGACAAGTAGAA
Left flanking sequence: Indices 599021 -- 599520
TGGCGGCGCGGGTCTGCGCTTGGCGAATCCATCTGCCTCAAAATCTCATAGATAGAAGGAAGTAG
ATCAATTTCGGTCTACACCTTACTGGAGTGGAGGAAGAGGTCGGATTGCCTAAACTAACCAATAC
TACTCGCCATTCAAAAGAGTCCACTAAAGAGGTCAAGACTTCAATCAGTCCGTCTGTGCTGTTTC
TGTTTCGAATGATCGGGTTTCAACGGCATCCCCAAGCACATGGGGATATGGGACGCGTGCTAGTT
CTCATTTGAAAGAAACTGAATCTTCCTTCTCTTTCCCGCCTGACACAGTTTGACACGCGGTGATA
CCTGATTGGCTCTCAATCCTGAGTGGTTGAAAGAGAACAAGCACGCGGGAAAAAGCAAGCGTCTG
ATCAGATCAATAAAGAAAGAGGGCTTCGGCCAAACATCTTTTTCCTAAGCAAGGACGGACGAGTG
ACTATTGCAAAATCTCTGAAAGGGGGAGTTCCATCATGTAGCTAG
Right flanking sequence: Indices 599561 -- 600060
GCAGGGTACTCAGAAGCCAGTGGGGTGGACAGATCACAGGCTTTTGTACTGGTCAGCTTTGGGCT
GTCGAGTGACGATTGGCTGAGGAAAAACCTCGTGGTGGAGTACTCTCTGACAGAATTGACGCTTC
GCTTGGGCGCTCTATTATTGCCTCCTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATACCCGAAA
AAGGACTATTCGCTTTTTTTGGTGGGCCTTTCGTACTCCAATCCATACGGGGCAAATTCTTCAGC
GCACTCAAATCTAGTGGTCAACTCGCATTTCATTGCGTTAGGGACAACTTTGAATGGCATGAATT
TCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGT
CAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCT
TGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGT
Found at i:600020 original size:22 final size:22
Alignment explanation
Indices: 599990--600054 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
599980 ATCAGTGACC
*
599990 TTATGGAAAGGTCAGGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
* *
600012 TTCTTGAAAGGTGAGGA--C-T
1 TTATTGAAAGGTCAGGACTCAT
* *
600031 TGATTGAAAGGTCAAGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
600053 TT
1 TT
600055 GTATGTCATC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 1 0.03
22 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
TTATTGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 599490 -- 599989
TCTGAAAGGGGGAGTTCCATCATGTAGCTAGGCCAGTCAAAGACAAGTAGAAGCCAGTTAAAGAC
GAGTAGGCAGGGTACTCAGAAGCCAGTGGGGTGGACAGATCACAGGCTTTTGTACTGGTCAGCTT
TGGGCTGTCGAGTGACGATTGGCTGAGGAAAAACCTCGTGGTGGAGTACTCTCTGACAGAATTGA
CGCTTCGCTTGGGCGCTCTATTATTGCCTCCTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATAC
CCGAAAAAGGACTATTCGCTTTTTTTGGTGGGCCTTTCGTACTCCAATCCATACGGGGCAAATTC
TTCAGCGCACTCAAATCTAGTGGTCAACTCGCATTTCATTGCGTTAGGGACAACTTTGAATGGCA
TGAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGA
TATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACC
Right flanking sequence: Indices 600055 -- 600554
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
Found at i:600186 original size:38 final size:38
Alignment explanation
Indices: 600144--600274 Score: 149
Period size: 38 Copynumber: 3.3 Consensus size: 38
600134 GACTATCTGA
* *
600144 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA-G
1 TCAGGACTGATTCTTCTGGTCAAGACTGTC-TTGAAAGG
* *
600182 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
600225 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
600263 TCAGGACTGATT
1 TCAGGACTGATT
600275 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 5 0.06
43 24 0.30
44 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 599644 -- 600143
GAGGAAAAACCTCGTGGTGGAGTACTCTCTGACAGAATTGACGCTTCGCTTGGGCGCTCTATTAT
TGCCTCCTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATACCCGAAAAAGGACTATTCGCTTTTT
TTGGTGGGCCTTTCGTACTCCAATCCATACGGGGCAAATTCTTCAGCGCACTCAAATCTAGTGGT
CAACTCGCATTTCATTGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACAAAATGAGATTC
ACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTT
GTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGA
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 600275 -- 600774
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:600211 original size:76 final size:79
Alignment explanation
Indices: 600085--600270 Score: 272
Period size: 76 Copynumber: 2.4 Consensus size: 79
600075 TTATCAAAAA
600085 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
600147 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
600161 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
600226 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
*
600242 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
600271 GATTATGGAA
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
79 1 0.01
80 4 0.04
81 39 0.40
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 599585 -- 600084
GTGGACAGATCACAGGCTTTTGTACTGGTCAGCTTTGGGCTGTCGAGTGACGATTGGCTGAGGAA
AAACCTCGTGGTGGAGTACTCTCTGACAGAATTGACGCTTCGCTTGGGCGCTCTATTATTGCCTC
CTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATACCCGAAAAAGGACTATTCGCTTTTTTTGGTG
GGCCTTTCGTACTCCAATCCATACGGGGCAAATTCTTCAGCGCACTCAAATCTAGTGGTCAACTC
GCATTTCATTGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACAAAATGAGATTCACTCTT
TTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGA
CCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 600271 -- 600770
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
Found at i:600225 original size:19 final size:19
Alignment explanation
Indices: 600201--600271 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
600191 ACCTTACCAA
600201 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
600220 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
600240 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
600258 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
600272 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 599701 -- 600200
TCTATTATTGCCTCCTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATACCCGAAAAAGGACTATT
CGCTTTTTTTGGTGGGCCTTTCGTACTCCAATCCATACGGGGCAAATTCTTCAGCGCACTCAAAT
CTAGTGGTCAACTCGCATTTCATTGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACAAAA
TGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGT
CAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGA
GGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 600272 -- 600771
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
Found at i:600233 original size:43 final size:41
Alignment explanation
Indices: 600063--600272 Score: 133
Period size: 43 Copynumber: 5.2 Consensus size: 41
600053 TTGTATGTCA
* * *
600063 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTA-CAAAAAGGTCAAGACTGTC-TTGAAAG
* * *
600106 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTGACCTTA-CAAAAAGGTCAAGACTGTCTTGAAAG
* * * *
600144 TCAGGACTGATTCTT-C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACAAAAAGGTCAAGACTGTC-TTGAAAG
600182 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTA-CAAAAAGGTCAAGACTGTCTTGAAA-G
* *
600225 TCAGGACTGATTCTT-C----TGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTACAAAAAGGTCAAGACTGTCTTGAAA-G
600263 TCAGGACTGA
1 TCAGGACTGA
600273 TTATGGAAGG
Statistics
Matches: 135, Mismatches: 18, Indels: 33
0.73 0.10 0.18
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 5 0.04
38 50 0.37
39 5 0.04
41 1 0.01
42 5 0.04
43 54 0.40
44 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (41 bp):
TCAGGACTGACCTTACAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 599563 -- 600062
AGGGTACTCAGAAGCCAGTGGGGTGGACAGATCACAGGCTTTTGTACTGGTCAGCTTTGGGCTGT
CGAGTGACGATTGGCTGAGGAAAAACCTCGTGGTGGAGTACTCTCTGACAGAATTGACGCTTCGC
TTGGGCGCTCTATTATTGCCTCCTCTTCGTGATCGAGGTTCAGCCGCGTGGCGATACCCGAAAAA
GGACTATTCGCTTTTTTTGGTGGGCCTTTCGTACTCCAATCCATACGGGGCAAATTCTTCAGCGC
ACTCAAATCTAGTGGTCAACTCGCATTTCATTGCGTTAGGGACAACTTTGAATGGCATGAATTTC
AGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 600273 -- 600772
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
Found at i:600514 original size:43 final size:42
Alignment explanation
Indices: 600349--600518 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
600339 TTGTATGTCA
* * * *
600349 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
600392 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
600430 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
600468 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
600511 TCAGGACT
1 TCAGGACT
600519 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 599849 -- 600348
TTCATTGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACAAAATGAGATTCACTCTTTTGT
CAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTG
AATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 600519 -- 601018
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
Found at i:600726 original size:19 final size:19
Alignment explanation
Indices: 600699--600769 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
600689 TATCAAAAAG
600699 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
600718 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
*
600741 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCAAA
*
600761 GTCAGGACT
1 GTCAAGACT
600770 AACCTGACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 600199 -- 600698
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 600770 -- 601269
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATC
AAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCA
Found at i:600746 original size:43 final size:42
Alignment explanation
Indices: 600685--601671 Score: 427
Period size: 43 Copynumber: 23.0 Consensus size: 42
600675 ATTAGTACTC
*
600685 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* * *
600728 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* *
600771 ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
600814 ATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** *
600857 ATTCTTCT-GGAAAGGTCAAGAC--T-ATGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGAC---TG
** * * *** * * * * *
600900 AGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACT-GTCTTGAAAG---TCAGGACTG
*
600951 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
*
600994 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** *
601037 A-TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* *** * *
601078 ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAG-TCAGGACTG
* * * * * *
601121 A--TTCTTC----TGGTCAATACTGTATTTCAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
*
601159 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
601202 ATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** * * *
601245 ATTCTTCT-TGAAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTG
1 A-CCTTATCAAAAAGGTCAAGACT-GTCT-T-G-AAAGTCAGG-A-CTG
* * ** * * * * *
601292 AGGAC-TGTCTTGAAAGGTCAAGACTCAT-TTGTATGTCATCAGTACTC
1 A--CCTTATC-AAAAAGGTCAAGACT-GTCTTGAAAG---TCAGGACTG
* * * *
601339 ACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
* *
601382 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
*
601425 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
601468 ATTCTTCT-TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** *
601511 A-TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* *** * *
601552 ACCTTTTTTGAAAGATCAAGACTATC-TG--A-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* * * * *
601590 A--TTCTTC----TGGTCAAGACTGTATTTCAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
*
601628 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
601671 A
1 A
601672 TTCTTCTGGT
Statistics
Matches: 743, Mismatches: 133, Indels: 136
0.73 0.13 0.13
Matches are distributed among these distances:
33 10 0.01
35 1 0.00
36 2 0.00
37 2 0.00
38 39 0.05
39 7 0.01
40 20 0.03
41 62 0.08
42 35 0.05
43 446 0.60
44 13 0.02
45 29 0.04
46 16 0.02
47 11 0.01
48 3 0.00
49 32 0.04
50 2 0.00
51 3 0.00
52 4 0.01
54 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (42 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
Left flanking sequence: Indices 600185 -- 600684
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 601672 -- 602171
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAT
Found at i:600750 original size:24 final size:24
Alignment explanation
Indices: 600685--600751 Score: 81
Period size: 19 Copynumber: 3.0 Consensus size: 24
600675 ATTAGTACTC
600685 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* *
600709 -TCTT-TC--AAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
600728 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
600752 TCTTTCACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.26
20 6 0.18
21 2 0.06
22 2 0.06
23 6 0.18
24 9 0.26
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 600185 -- 600684
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 600752 -- 601251
TCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTAT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Found at i:600751 original size:113 final size:116
Alignment explanation
Indices: 600506--600751 Score: 306
Period size: 119 Copynumber: 2.1 Consensus size: 116
600496 GACTGTCTTG
*
600506 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
600570 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
600625 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * *
600689 TATC-AA-AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
600738 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
600752 TCTTTCACAG
Statistics
Matches: 114, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.34
114 5 0.04
116 2 0.02
119 62 0.54
120 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 600006 -- 600505
ACTCATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 600752 -- 601251
TCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTAT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Found at i:600826 original size:24 final size:24
Alignment explanation
Indices: 600781--600879 Score: 110
Period size: 19 Copynumber: 4.5 Consensus size: 24
600771 ACCTGACCAA
600781 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
600800 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
600824 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
600843 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
600867 AAAGGTCAAGACT
1 AAAGGTCAAGACT
600880 ATGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 2 0.03
24 27 0.41
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (24 bp):
AAAGGTCAAGACTGATTCTTCTGG
Left flanking sequence: Indices 600281 -- 600780
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 600880 -- 601379
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCA
TTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGAC
Found at i:600887 original size:16 final size:16
Alignment explanation
Indices: 600866--600896 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
600856 GATTCTTCTG
600866 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
600882 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
600897 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 600366 -- 600865
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 600897 -- 601396
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAG
ATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGA
AGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGG
Found at i:601028 original size:19 final size:19
Alignment explanation
Indices: 601004--601244 Score: 94
Period size: 19 Copynumber: 11.7 Consensus size: 19
600994 ACCTTACCAA
601004 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601023 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
601047 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
601066 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
601088 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
601107 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * * *
601127 -CTGGTCAATACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
601145 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
601169 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601188 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
601212 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601231 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
601245 ATTCTTCTTG
Statistics
Matches: 168, Mismatches: 28, Indels: 52
0.68 0.11 0.21
Matches are distributed among these distances:
17 6 0.04
19 84 0.50
20 5 0.03
21 9 0.05
22 13 0.08
23 4 0.02
24 47 0.28
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 600504 -- 601003
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 601245 -- 601744
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCC
Found at i:601189 original size:388 final size:387
Alignment explanation
Indices: 600741--601518 Score: 1092
Period size: 388 Copynumber: 2.0 Consensus size: 387
600731 TTATCAAAAA
*
600741 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGT
600806 CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
66 CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
*
600871 GTCAAGA-C-TAT-GAAAGGTCAGGACTA-ATGA-GAATG-ATTGAGGAATGACCATCAAGACTC
131 GTCAAGACCATATGGAAAAGTCAGGA--AGATGAGGAATGTATTGA--AA-G---ATCAAGACTC
*
600930 ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
188 ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGA
* * ** * ***
600995 CCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
253 CCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTTACCAAAAAGGTCAAGAC
*
601059 TGTCTTGAAA-TCAGTACTGACCTT-TT-TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
317 TGTCTTGAAAGTCAGGACTGA--TTCTTCTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
601121 ATTCTTCT
380 ATTCTTCT
* * *
601129 GGTCAATACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
*
601193 TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
65 TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
* * * * *
601258 GGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTG
130 GGTCAAGAC-CA-TATGGAAAAGTCAGGAAGATGAGGAATGTATTGAAAGATCAAGACTCATTTG
* *
601323 TATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTA
193 TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTA
*
601388 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
258 CCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
* * * *
601453 GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
323 GAAA-GTCAGGACTGATTCTTCTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
601518 T
387 T
601519 TGAAAGGTCA
Statistics
Matches: 348, Mismatches: 28, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
387 1 0.00
388 261 0.75
389 7 0.02
390 50 0.14
391 2 0.01
392 8 0.02
393 15 0.04
394 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (387 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAAGACCATATGGAAAAGTCAGGAAGATGAGGAATGTATTGAAAGATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGTCAGGACTGATTCTTCTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Left flanking sequence: Indices 600241 -- 600740
TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAA
Right flanking sequence: Indices 601519 -- 602018
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Found at i:601214 original size:24 final size:23
Alignment explanation
Indices: 601186--601267 Score: 109
Period size: 24 Copynumber: 3.7 Consensus size: 23
601176 AAGACTGTCT
601186 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
*
601209 TGGAAAGGTCAAGACTG--TC-T-
1 T-GAAAGGTCAGGACTGATTCTTC
601229 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
601252 TTGAAAGGTCAGGACT
1 -TGAAAGGTCAGGACT
601268 CATTATGGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
19 14 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 29 0.57
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (23 bp):
TGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 600686 -- 601185
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTA
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 601268 -- 601767
CATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
Found at i:601220 original size:431 final size:420
Alignment explanation
Indices: 600698--601955 Score: 1171
Period size: 431 Copynumber: 3.0 Consensus size: 420
600688 TTATCAAAAA
* * *
600698 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-G
1 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTA-CAAAAAGGTCAAGACTGTC-TTCAAAGG
* *
600762 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
64 TCAGGACTGACCT-TCCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-GAAA
*
600827 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTA-TGAAAGGTCA
127 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--CTTCTGGAAAGGTCAAGACTATTGAAATGTCA
* * *
600891 GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
190 TGACTAATCAG--T-A-TCA--AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
600956 ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
249 ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
* *
601021 TGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTTT
314 TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CTTTT
601085 -TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA-TTCTTCT
378 CTTGAAAGATCAAGACTATCTTG-AA-ATCAGGACTGACTT-TTCT
* *
601129 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTA-CAAAAAGGTCAAGACTGTCTTCAAAGGT
* ***
601194 CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
65 CAGGACTGA-CCTTCCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-TGAAAG
* * * * *
601259 GTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTG
128 GTCAAGACT-GTCT-T-GAAAGGTCAGG-A-CT---GACT-TCTGGAAAGGTCAAGACT-A-TTG
* * * * * *** * * * *
601323 -TATGTCATCAGTACTCACCTTATCAAA--AAGGTCAATACTGTATTT-CA---CAGTCAGGACT
182 AAATGTCATGACTAATCA--GTATCAAATGACCATCAAGACT-CATTTGTATGTCA-TCAGTACT
* *
601381 GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGA
243 CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
601446 CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
308 CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * * * *
601511 ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTT
372 ACTTTTCTTGAAAGATCAAGACTATCTTGAAATCAGGACTGA-CTTTTCT
* * * * *
601561 GAAAGATCAAGAC--TA--TC-TGATCAGGACTGATTCTT-C----TGGTCAAGACTGTATTTC-
1 G---G-TCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACAAAAAGGTCAAGACTGT-CTTCA
601615 AAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-
60 AAGGTCAGGACTGACCTT-CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
* * * * *
601679 ---GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-TTATGG-AAGGACAGGACCAATTGCAATTG
124 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGACTTCTGGAAAGGTCAAGA-CTATTG-AAATG
* * **
601739 T-ATG-C-CATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTA
187 TCATGACTAATCAGTA-TCAAATGACCAT-CAAGACTCATTTGTATGTCATCAGTACTCACCTTA
* *
601801 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T
250 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
* * * * *
601865 G--A--TCAGGACTGATTCTTC-T----GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
315 GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGACTTTTC
*** *
601921 CAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT
379 TTGAAAGATCAAGACTATCTTGAAA--TCAGGACT
601956 TTTGATGGAA
Statistics
Matches: 687, Mismatches: 94, Indels: 118
0.76 0.10 0.13
Matches are distributed among these distances:
403 47 0.07
404 4 0.01
405 7 0.01
407 3 0.00
408 19 0.03
409 2 0.00
410 10 0.01
411 18 0.03
412 9 0.01
413 74 0.11
414 4 0.01
417 1 0.00
418 1 0.00
419 10 0.01
420 2 0.00
421 10 0.01
425 4 0.01
426 67 0.10
427 2 0.00
430 7 0.01
431 261 0.38
432 20 0.03
433 50 0.07
434 7 0.01
435 4 0.01
436 8 0.01
437 19 0.03
438 4 0.01
439 11 0.02
440 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (420 bp):
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACAAAAAGGTCAAGACTGTCTTCAAAGGTC
AGGACTGACCTTCCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGACTTCTGGAAAGGTCAAGACTATTGAAATGTCATGACTA
ATCAGTATCAAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACTTTTCTTGAAAGATCAA
GACTATCTTGAAATCAGGACTGACTTTTCT
Left flanking sequence: Indices 600198 -- 600697
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 601956 -- 602455
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACT
CATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAG
Found at i:601404 original size:24 final size:24
Alignment explanation
Indices: 601372--601448 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
601362 GTATTTCACA
*
601372 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
601396 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
601415 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
601439 GTCAAGACTG
1 GTCAAGACTG
601449 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 600872 -- 601371
TCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGT
CAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 601449 -- 601948
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
Found at i:601459 original size:19 final size:19
Alignment explanation
Indices: 601435--601542 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
601425 ACCTTACCAA
601435 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601454 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
601478 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601497 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
601521 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
601540 AAA
1 AAA
601543 TCAGTACTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 39 0.52
24 36 0.48
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 600935 -- 601434
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
GTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 601543 -- 602042
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATT
GTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
Found at i:601478 original size:24 final size:23
Alignment explanation
Indices: 601435--601534 Score: 108
Period size: 24 Copynumber: 4.6 Consensus size: 23
601425 ACCTTACCAA
601435 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
601454 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
601478 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
601497 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGA-TTTTCTTG
601521 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
601535 TCTTGAAATC
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
19 31 0.46
24 36 0.54
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTTTCTTG
Left flanking sequence: Indices 600935 -- 601434
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
GTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 601535 -- 602034
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Found at i:601623 original size:38 final size:38
Alignment explanation
Indices: 601581--601711 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
601571 GACTATCTGA
* **
601581 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
601619 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
601662 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
601700 TCAGGACTGATT
1 TCAGGACTGATT
601712 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 601081 -- 601580
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTC
AAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGG
AAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 601712 -- 602211
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:601662 original size:19 final size:19
Alignment explanation
Indices: 601638--601708 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
601628 ACCTTACCAA
601638 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601657 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
601677 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
601695 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
601709 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 601138 -- 601637
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 601709 -- 602208
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
Found at i:601849 original size:43 final size:42
Alignment explanation
Indices: 601786--601955 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
601776 TTGTATGTCA
* * * *
601786 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
601829 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
601867 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
601905 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
601948 TCAGGACT
1 TCAGGACT
601956 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 601286 -- 601785
AAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
AGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 601956 -- 602455
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACT
CATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAG
Found at i:602206 original size:19 final size:19
Alignment explanation
Indices: 602136--602206 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
602126 TATCAAAAAG
*
602136 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
602155 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
602178 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
602198 GTCAGGACT
1 GTCAAGACT
602207 AACCTTACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 601636 -- 602135
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 602207 -- 602706
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAG
GTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
Found at i:602233 original size:43 final size:43
Alignment explanation
Indices: 602122--602235 Score: 201
Period size: 43 Copynumber: 2.7 Consensus size: 43
602112 ATTAGTACTC
* *
602122 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
602165 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
*
602208 ACCTTACCAAAAAGGTCAAGACTGTCTT
1 ACCTTATCAAAAAGGTCAAGACTGTCTT
602236 GAAAGGTCAG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
Left flanking sequence: Indices 601622 -- 602121
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 602236 -- 602735
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAGGACTACTT
TCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Found at i:602242 original size:19 final size:20
Alignment explanation
Indices: 602218--602316 Score: 94
Period size: 19 Copynumber: 4.7 Consensus size: 20
602208 ACCTTACCAA
602218 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
602237 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG----TTCTTG
602261 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
602280 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG-TTC-T-T-G
602304 AAAGGTCAAGACT
1 AAAGGTCAAGACT
602317 ATGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 31 0.47
21 2 0.03
22 1 0.02
23 1 0.02
24 31 0.47
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (20 bp):
AAAGGTCAAGACTGTTCTTG
Left flanking sequence: Indices 601718 -- 602217
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 602317 -- 602816
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
Found at i:602245 original size:43 final size:42
Alignment explanation
Indices: 602122--602292 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 42
602112 ATTAGTACTC
* * * *
602122 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAGTCAGGACTA
* *
602165 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAGTCAGGACTA
*
602208 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-GTCAGGACT-A
** *** *
602252 TTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 ACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-GTCAGGACT
602293 GATTCTTCTG
Statistics
Matches: 115, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
42 4 0.03
43 107 0.93
44 4 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (42 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTCAAAGTCAGGACTA
Left flanking sequence: Indices 601622 -- 602121
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 602293 -- 602792
GATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAG
GACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGA
Found at i:602261 original size:24 final size:24
Alignment explanation
Indices: 602232--602316 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
602222 GTCAAGACTG
*
602232 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
602256 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAAGACTGATTCT
*
602275 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
*
602299 TCTGGAAAGGTCAAGACT
1 TCTTGAAAGGTCAAGACT
602317 ATGAAAGGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 18 0.35
24 34 0.65
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAAGACTGATTCT
Left flanking sequence: Indices 601732 -- 602231
GCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 602317 -- 602816
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
Found at i:602288 original size:86 final size:86
Alignment explanation
Indices: 602122--602292 Score: 204
Period size: 86 Copynumber: 2.0 Consensus size: 86
602112 ATTAGTACTC
* * *
602122 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
*
602187 TGTCTTTCACAGTCAGGACTA
66 TGTCTTTCAAAGTCAGGACTA
* * * **
602208 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTTCT-TGAAAGGTCAAG
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAG
*
602271 ACTGTC-TTGAAAGGTCAGGACT
64 ACTGTCTTTCAAA-GTCAGGACT
602293 GATTCTTCTG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
85 8 0.11
86 60 0.83
87 4 0.06
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (86 bp):
ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTA
Left flanking sequence: Indices 601622 -- 602121
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 602293 -- 602792
GATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAG
GACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGA
Found at i:602293 original size:43 final size:43
Alignment explanation
Indices: 602218--602332 Score: 191
Period size: 43 Copynumber: 2.7 Consensus size: 43
602208 ACCTTACCAA
*
602218 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
602261 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
*
602304 AAAGGTCAAGAC--T-ATGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
602333 AATGAGAATG
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
40 15 0.21
41 1 0.01
43 54 0.77
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 601718 -- 602217
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 602333 -- 602832
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
Found at i:602324 original size:16 final size:16
Alignment explanation
Indices: 602303--602333 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
602293 GATTCTTCTG
602303 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
602319 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
602334 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 601803 -- 602302
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 602334 -- 602833
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
AAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTC
AGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
Found at i:602536 original size:127 final size:127
Alignment explanation
Indices: 602307--602537 Score: 426
Period size: 127 Copynumber: 1.8 Consensus size: 127
602297 CTTCTGGAAA
602307 GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
1 GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
*
602372 TATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAGGACTACTTTCC
66 TATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACTCATTATGGACAGGACTACTTTCC
*
602434 GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
1 GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
* *
602499 TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
66 TATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACT
602538 GTCTTTCACA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
127 100 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (127 bp):
GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACTCATTATGGACAGGACTACTTTCC
Left flanking sequence: Indices 601807 -- 602306
AGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAA
AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
Right flanking sequence: Indices 602538 -- 603037
GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
AAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAA
Found at i:602569 original size:43 final size:43
Alignment explanation
Indices: 602506--602661 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 43
602496 TTGTATGTCA
* * * *
602506 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* *
602549 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* * * *
602587 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTTCACAG
602625 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
602662 GAAAGGTCAG
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 20 0.24
39 5 0.06
41 1 0.01
43 43 0.51
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 602006 -- 602505
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACC
AAAAAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 602662 -- 603161
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
Found at i:602883 original size:19 final size:19
Alignment explanation
Indices: 602856--602926 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
602846 TATCAAAAAG
*
602856 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
602875 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
602898 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
602918 GTCAGGACT
1 GTCAAGACT
602927 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 602356 -- 602855
CATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGAC
AGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 602927 -- 603426
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGA
CCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAG
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
Found at i:602903 original size:43 final size:44
Alignment explanation
Indices: 602842--603473 Score: 314
Period size: 43 Copynumber: 15.0 Consensus size: 44
602832 ATTAGTACTC
* *
602842 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* *
602885 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
*
602928 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* *
602971 A--TTCTTC----TGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* * **
603009 ATTCTTCT-TGAAAGGTCAAGAC--TC--TGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGAC---TG
** * * *** * * * * *
603052 AGAATGATTGAGGAATGACCATCAAGAC--TCATTTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACTGTC-TTTGAAAG--GTCAGGACTG
* * *
603103 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* *
603146 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
*
603189 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* * **
603232 ATTCTTCT-GGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* * ** *
603275 A-TTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA--TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* *** * *
603316 ACCTTTTTTGAAAGATCAAGACTATC--TG--A--TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* * * *
603354 A--TTCTTC----TGGTCAAGACTGTATTT-CAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
*
603392 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
* *
603435 A--TTCTTC----TGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
603473 A
1 A
603474 TTATGGAAGG
Statistics
Matches: 471, Mismatches: 73, Indels: 95
0.74 0.11 0.15
Matches are distributed among these distances:
33 10 0.02
35 1 0.00
36 3 0.01
37 2 0.00
38 82 0.17
39 1 0.00
40 19 0.04
41 36 0.08
42 18 0.04
43 254 0.54
44 4 0.01
45 8 0.02
46 3 0.01
47 4 0.01
49 12 0.03
50 2 0.00
51 2 0.00
52 4 0.01
54 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 602342 -- 602841
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAA
GACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 603474 -- 603973
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTATCAAAAACAAAAAGGTCAATACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGA
Found at i:602908 original size:113 final size:116
Alignment explanation
Indices: 602663--602908 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
602653 GACTGTCTTG
*
602663 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
602727 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
602782 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
602846 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
602895 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
602909 TCTTTCAAAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 602163 -- 602662
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTCATTATGGACAG
GACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 602909 -- 603408
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
Found at i:602962 original size:19 final size:19
Alignment explanation
Indices: 602938--603047 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
602928 ACCTTACCAA
602938 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
602957 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
602977 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
602995 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
603019 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
603035 AAAGGTCAGGACT
1 AAAGGTCAAGACT
603048 AATGAGAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
16 13 0.18
17 6 0.08
19 33 0.46
21 4 0.06
24 16 0.22
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 602438 -- 602937
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 603048 -- 603547
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGT
Found at i:602992 original size:38 final size:38
Alignment explanation
Indices: 602941--603016 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
602931 TTACCAAAAA
602941 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
602979 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
603017 TGAAAGGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 602441 -- 602940
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 603017 -- 603516
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
Found at i:603038 original size:16 final size:16
Alignment explanation
Indices: 603017--603047 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
603007 TGATTCTTCT
603017 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
603033 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
603048 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 602517 -- 603016
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 603048 -- 603547
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGT
Found at i:603127 original size:261 final size:262
Alignment explanation
Indices: 602823--603297 Score: 871
Period size: 261 Copynumber: 1.8 Consensus size: 262
602813 CCAATTGCAA
* *
602823 TTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
1 TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
602888 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
602953 CTTGAAAGGTCAGGACTGATTCTTCT-GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
131 CTTGAAAGGTCAGGACTGATTCTTCTAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
603017 TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
196 TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
603082 AT
261 AT
*
603084 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
1 TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
603149 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
*
603214 CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
131 CTTGAAAGGTCAGGACTGATTCTTCT----AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
603279 TTCTTGAAAGGTCAAGACT
192 TTCTTGAAAGGTCAAGACT
603298 GTCTTGAAAT
Statistics
Matches: 205, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
261 153 0.75
266 52 0.25
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (262 bp):
TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
AT
Left flanking sequence: Indices 602323 -- 602822
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAAAAGGTGAAGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
Right flanking sequence: Indices 603298 -- 603797
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAA
AAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
Found at i:603187 original size:19 final size:19
Alignment explanation
Indices: 603117--603187 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
603107 TATCAAAAAG
* *
603117 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
603136 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
603159 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
603179 GTCAGGACT
1 GTCAAGACT
603188 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 602617 -- 603116
TTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 603188 -- 603687
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAA
Found at i:603223 original size:19 final size:19
Alignment explanation
Indices: 603199--603306 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
603189 ACCTTACCAA
603199 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
603218 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
603242 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
603261 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
603285 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
603304 AAA
1 AAA
603307 TCAGTACTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 35 0.47
20 1 0.01
21 3 0.04
22 3 0.04
23 1 0.01
24 32 0.43
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 602699 -- 603198
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 603307 -- 603806
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATT
GTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
Found at i:603244 original size:24 final size:23
Alignment explanation
Indices: 603199--603298 Score: 99
Period size: 24 Copynumber: 4.6 Consensus size: 23
603189 ACCTTACCAA
603199 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
603218 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCT-G
603242 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
* *
603261 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGATTCTTC-TG
603285 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
603299 TCTTGAAATC
Statistics
Matches: 66, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 4 0.06
22 4 0.06
23 1 0.02
24 29 0.44
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTCTTCTG
Left flanking sequence: Indices 602699 -- 603198
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 603299 -- 603798
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Found at i:603387 original size:38 final size:38
Alignment explanation
Indices: 603345--603475 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
603335 GACTATCTGA
* **
603345 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
603383 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
603426 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
603464 TCAGGACTGATT
1 TCAGGACTGATT
603476 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 602845 -- 603344
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 603476 -- 603975
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAAAAGTCAGAACTCACCTTATCAAAAACAAAAAGGTCAATACTGTCTTTCACAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAAC
Found at i:603426 original size:19 final size:19
Alignment explanation
Indices: 603402--603472 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
603392 ACCTTACCAA
603402 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
603421 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
603441 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
603459 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
603473 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 602902 -- 603401
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 603473 -- 603972
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAACAAAAAGGTCAATACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAG
Found at i:603845 original size:16 final size:16
Alignment explanation
Indices: 603824--603854 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
603814 TCATTCTTCT
603824 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
603840 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
603855 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 603324 -- 603823
TGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 603855 -- 604354
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAACAAAAAGGTCAATACTGTCTT
TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTC
TTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAA
CAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTT
TGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTT
Found at i:604055 original size:28 final size:28
Alignment explanation
Indices: 604032--604213 Score: 332
Period size: 28 Copynumber: 6.5 Consensus size: 28
604022 TGACAATTGT
604032 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
604060 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
604088 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
604116 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
604144 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
604172 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAACAA
604200 ATGCCATTAGTACT
1 ATGCCATTAGTACT
604214 TTCCATATGC
Statistics
Matches: 151, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.02
28 143 0.95
29 5 0.03
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 603532 -- 604031
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAACAAAAAGGTCAATACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 604214 -- 604713
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCT
TTCCATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATG
GCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAA
CCTTGATGTCCTGAAACAACCAAAAGCTTTGAATGCTTCGCTTTGGCTTTGCCTATAAAAGCACA
AAGCACTCGCAAAGCGACAAAGCCACTTTTCAGAAAGAACTCCTTTCAATCTGATCTTGAAGGTC
ATGTCACGTCAGAATCAAACCTTTGCTTATCCAATTAGCTCATACTTTAAAAAAGCACTCGCAAA
GCGAAACAAATCATGAGCCACTTTGATGAAATGCAAAGCAAAGTC
Found at i:608527 original size:78 final size:74
Alignment explanation
Indices: 608441--608582 Score: 223
Period size: 75 Copynumber: 1.9 Consensus size: 74
608431 AGGCAATTAT
608441 GGACAGGA-CTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAG
1 GGACAGGACCTT--TTGAAAGGTCAGGA--CTCT-GAAAGGTCAGGACTAATGAGAATGATTGAG
608505 GAATGATTATGGAA
61 GAATGATTATGGAA
608519 GGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
1 GGACAGGA-CCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
608583 AAGTCAGAAC
Statistics
Matches: 62, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
75 33 0.53
76 4 0.06
78 22 0.35
80 3 0.05
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (74 bp):
GGACAGGACCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ATTATGGAA
Left flanking sequence: Indices 607941 -- 608440
CTGCCTCTTCCTCGCCACCACGATCTCTAATACATTCTATGCTTCGCTGCTCCCGTTCGGATAAG
ACCGGGAAGAATGACACAATGGAGGGTGCCTGCCTTTTCATTCCGCTTTGCGATGACTGGTCCTT
CCGTTTCGTCCCCGTCTCTAACTCCACTTTCGGGGCTGGGACAAGAACAACAAACTTTCACTACA
TTACTACATTGTTCATCACCTCAAAGCACTCGCAAAGTCACGTCACGAGCAACCAGCGAGCAAAG
CCCTCACGCTTCGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGC
AATTGAAAGGTCAGCGCACAACTATAGGCAGAGCCAAAGCTTTGCGAGTGTGCTTATGATTTGTG
GAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGAATTGCAATTAGTCCTGT
CCATAACCTTTCCATAAGCTCACAAACTCATGGAAAGGCAATTAT
Right flanking sequence: Indices 608583 -- 609082
AAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAA
GAAGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAA
GGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAG
GACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
Found at i:608554 original size:16 final size:16
Alignment explanation
Indices: 608533--608563 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
608523 AGGACCCTTT
608533 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
608549 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
608564 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 608033 -- 608532
GCCTGCCTTTTCATTCCGCTTTGCGATGACTGGTCCTTCCGTTTCGTCCCCGTCTCTAACTCCAC
TTTCGGGGCTGGGACAAGAACAACAAACTTTCACTACATTACTACATTGTTCATCACCTCAAAGC
ACTCGCAAAGTCACGTCACGAGCAACCAGCGAGCAAAGCCCTCACGCTTCGCTTCGCTTTGCGAG
TGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAGCGCACAACTATAG
GCAGAGCCAAAGCTTTGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCAT
TGGGAGCACTAATGGCATTGAATTGCAATTAGTCCTGTCCATAACCTTTCCATAAGCTCACAAAC
TCATGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 608564 -- 609063
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCA
GGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTG
Found at i:608632 original size:43 final size:43
Alignment explanation
Indices: 608584--608665 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
608574 ATTGAGGAAA
* * *
608584 AGTCAGAACTCACCT-TCTCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTGAC-CAAAAAGATCAAGACTGTCTTTCAC
*
608627 AGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTT
608666 GAAAGATCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 608084 -- 608583
GTCTCTAACTCCACTTTCGGGGCTGGGACAAGAACAACAAACTTTCACTACATTACTACATTGTT
CATCACCTCAAAGCACTCGCAAAGTCACGTCACGAGCAACCAGCGAGCAAAGCCCTCACGCTTCG
CTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCA
GCGCACAACTATAGGCAGAGCCAAAGCTTTGCGAGTGTGCTTATGATTTGTGGAAACACTAATGG
CATACAATTGCCATTGGGAGCACTAATGGCATTGAATTGCAATTAGTCCTGTCCATAACCTTTCC
ATAAGCTCACAAACTCATGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 608666 -- 609165
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCA
AAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTG
Found at i:608758 original size:28 final size:28
Alignment explanation
Indices: 608735--608854 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
608725 TGACAATTGT
608735 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
608763 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
608791 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
608819 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
608847 ATGCCATT
1 ATGCCATT
608855 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 608235 -- 608734
TCGATTCGCTTTGCGAGTGCGTGCTTTGTGCAATTGAAAGGTCAGCGCACAACTATAGGCAGAGC
CAAAGCTTTGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGC
ACTAATGGCATTGAATTGCAATTAGTCCTGTCCATAACCTTTCCATAAGCTCACAAACTCATGGA
AAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 608855 -- 609354
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACC
TTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTT
CCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTT
TCCATACAACAAATTGTATGCCTTCCAAAATCCATGTTGGTTGAT
Found at i:608928 original size:41 final size:41
Alignment explanation
Indices: 608869--608950 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
608859 ATCAACAATG
* * *
608869 AGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
608910 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
608951 TCAGGACTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (41 bp):
AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
Left flanking sequence: Indices 608369 -- 608868
ATGGCATTGAATTGCAATTAGTCCTGTCCATAACCTTTCCATAAGCTCACAAACTCATGGAAAGG
CAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 608951 -- 609450
TCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAG
ATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAA
CATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAAT
CCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATTCCAATTG
GGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTA
Found at i:609053 original size:19 final size:17
Alignment explanation
Indices: 609029--609076 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
609019 ACCATACCAA
609029 AAAGGTCAGGACTGTCTTG
1 AAAGGTCAGGACT-TC-TG
*
609048 AAAGGTCAAGAC-TCTG
1 AAAGGTCAGGACTTCTG
609064 AAAGGTCAGGACT
1 AAAGGTCAGGACT
609077 AATGAGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 13 0.50
17 2 0.08
19 11 0.42
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (17 bp):
AAAGGTCAGGACTTCTG
Left flanking sequence: Indices 608529 -- 609028
CTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACT
CACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGA
CTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTC
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTT
TCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Right flanking sequence: Indices 609077 -- 609576
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATA
CCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCA
AAATCCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATTCCA
ATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTA
CAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAA
TTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCC
Found at i:609199 original size:28 final size:28
Alignment explanation
Indices: 609167--609267 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
609157 TTGCAATTGT
609167 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
609195 ATGCCATTAGTACTCACT-TGACAAACAA
1 ATGCCATTAGTACTCACTGT-ACAAACAA
609223 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
609251 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
609268 CATACCAACA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 608667 -- 609166
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCAA
AAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 609268 -- 609767
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAAT
TCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTT
TGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACAT
ACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCC
ATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
Found at i:609450 original size:29 final size:29
Alignment explanation
Indices: 609406--609485 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
609396 ATTCCAATTG
*
609406 GGTATGGTGAGCACTAATGGCATTTGTTT
1 GGTATGGTGAGTACTAATGGCATTTGTTT
*
609435 GGTATGGTGAGTACTAATGACATTTGTTT
1 GGTATGGTGAGTACTAATGGCATTTGTTT
**
609464 -GTACAGTGAGTACTAATGGCAT
1 GGTATGGTGAGTACTAATGGCAT
609486 ATGGAAAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 19 0.41
29 27 0.59
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36
Consensus pattern (29 bp):
GGTATGGTGAGTACTAATGGCATTTGTTT
Left flanking sequence: Indices 608906 -- 609405
AAGAAGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAA
AAGGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTC
AGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCA
AAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGTTGGTTGATGGATAA
TGGCATCTCCTTTTTTTGATGGATAATGGCATACAATTCCAATTG
Right flanking sequence: Indices 609486 -- 609985
ATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAT
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGA
Found at i:609645 original size:19 final size:19
Alignment explanation
Indices: 609571--609637 Score: 89
Period size: 19 Copynumber: 3.3 Consensus size: 19
609561 CAATTGCAAT
609571 GAGTCCTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
609590 GAGTCCTGACCTTTCAAGAAGAA
1 GAGTCCTGACCTTTC---AA-AA
609613 TGAGTCCTGACCTTTCAAAA
1 -GAGTCCTGACCTTTCAAAA
609633 GAGTC
1 GAGTC
609638 TTCACCTTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
19 20 0.47
20 2 0.05
21 2 0.05
22 2 0.05
23 2 0.05
24 15 0.35
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (19 bp):
GAGTCCTGACCTTTCAAAA
Left flanking sequence: Indices 609071 -- 609570
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCA
TACCAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTC
ACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGC
CTTCCAAAATCCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACA
ATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTG
TTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGAC
ATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAAT
Right flanking sequence: Indices 609638 -- 610137
TTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
Found at i:609675 original size:73 final size:71
Alignment explanation
Indices: 609574--609718 Score: 227
Period size: 73 Copynumber: 2.0 Consensus size: 71
609564 TTGCAATGAG
*
609574 TCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAAGAGTCT
1 TCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAACAGTCT
609639 TCACCT
66 TCACCT
* * *
609645 TCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 TCCTGACCTTT-CA-AAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAACAGT
*
609710 CTTGACCT
64 CTTCACCT
609718 T
1 T
609719 TCCATTTTTG
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
71 10 0.15
72 2 0.03
73 55 0.82
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (71 bp):
TCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAACAGTCT
TCACCT
Left flanking sequence: Indices 609074 -- 609573
ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATAC
CAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACC
ATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTT
CCAAAATCCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATT
CCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTT
GTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATA
CAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAG
Right flanking sequence: Indices 609719 -- 610218
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTCATTGTTGAT
Found at i:609705 original size:24 final size:23
Alignment explanation
Indices: 609568--609703 Score: 113
Period size: 24 Copynumber: 5.9 Consensus size: 23
609558 ATACAATTGC
609568 AATGAGTCCTGACCTTTC--AA-
1 AATGAGTCCTGACCTTTCAAAAG
609588 AA-GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAA-AAG
609611 AATGAGTCCTGACCTTTCAAAAG
1 AATGAGTCCTGACCTTTCAAAAG
* * * * * *
609634 AGTCTTCACCTTCCTGACTTTTC--CAT
1 A---ATGA--GTCCTGACCTTTCAAAAG
609660 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAA-AAG
609684 AATGAGTCCTGACCTTTCAA
1 AATGAGTCCTGACCTTTCAA
609704 GACAGTCTTG
Statistics
Matches: 91, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
19 15 0.16
20 2 0.02
21 11 0.12
22 2 0.02
23 8 0.09
24 38 0.42
26 4 0.04
28 11 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (23 bp):
AATGAGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 609068 -- 609567
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCATACCAAAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTG
CTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTA
TGCCTTCCAAAATCCATGTTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCAT
ACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACAT
TTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGA
GACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 609704 -- 610203
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
Found at i:609844 original size:43 final size:42
Alignment explanation
Indices: 609783--609952 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
609773 TTCCATCAAA
**
609783 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
609826 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* *
609864 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
609902 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
609945 AGTACTGA
1 AGTCCTGA
609953 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.54
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 609283 -- 609782
ACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGTT
GGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATTCCAATTGGGTATGG
TGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACT
AATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAA
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 609953 -- 610452
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTCATT
GTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGT
Found at i:610058 original size:19 final size:19
Alignment explanation
Indices: 610030--610105 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
610020 CTTCCATAAT
610030 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
610049 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
610072 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
610092 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
610106 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 609530 -- 610029
AATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 610106 -- 610605
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCT
TTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTT
TGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAT
Found at i:610076 original size:24 final size:24
Alignment explanation
Indices: 610027--610091 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
610017 GTCCTTCCAT
610027 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
610048 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
610070 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
610092 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 609527 -- 610026
TACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTC
CATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 610092 -- 610591
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGA
AAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
ATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGAC
AGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAA
AGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGT
Found at i:610144 original size:19 final size:19
Alignment explanation
Indices: 610117--610187 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
610107 TGGTAAGGTT
*
610117 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
610136 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
610160 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
610179 AGTCTTGAC
1 AGTCCTGAC
610188 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 609617 -- 610116
TCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 610188 -- 610687
CTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCAT
TAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCCATCAATCCGTCAAACCTTGATCCCTTCTTTCAGCATTCA
AAGTTGCGAGTGCTTTGTGGGCTTTGCTCATCAATTGACGTTGGT
Found at i:610193 original size:43 final size:43
Alignment explanation
Indices: 610029--610201 Score: 217
Period size: 43 Copynumber: 4.0 Consensus size: 43
610019 CCTTCCATAA
* ** * *
610029 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAG-G
* *
610072 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
* *
610115 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTAAAGACAGTCTTGACCTTTTTGATAAGG
610158 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
610201 T
1 T
610202 GAGTACTCAT
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 3 0.03
43 107 0.92
44 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 609529 -- 610028
CAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTCCTGACTTTTCCA
TAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 610202 -- 610701
GAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCCATCAATCCGTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCT
TTGTGGGCTTTGCTCATCAATTGACGTTGGTTCGGGGGCATTTTG
Found at i:610266 original size:28 final size:29
Alignment explanation
Indices: 610223--610342 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
610213 GTTGATGGAA
610223 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
610251 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
610279 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
610307 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
610335 AATGGCAT
1 AATGGCAT
610343 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 609723 -- 610222
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 610343 -- 610842
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CATCAATCCGTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTT
GCTCATCAATTGACGTTGGTTCGGGGGCATTTTGCCGGGATAGGCCATCTTGACTTCTTTGATCC
CCCAAACCTTCTTTCTTTCCTGCCTTGCCTTTCCTCAAGTACATCTCCTCTCGAGCCAGTTGTGT
TGCTGCCTCTGACATTACCTCCGATTATCTCCGAAATCTCTACCT
Found at i:610492 original size:43 final size:43
Alignment explanation
Indices: 610412--610493 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
610402 CTGATCTTTC
* * *
610412 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTGAGTCCTGACTGTGA
*
610455 AAGACAGTCTTGACCTTTTTGAG-AAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTG-GTAAGGTGAGTCCTGACT
610494 TTTCCTCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 609912 -- 610411
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 610494 -- 610993
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCAATCCGTCAAACCTTGA
TCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCATCAATTGACGTTGGTT
CGGGGGCATTTTGCCGGGATAGGCCATCTTGACTTCTTTGATCCCCCAAACCTTCTTTCTTTCCT
GCCTTGCCTTTCCTCAAGTACATCTCCTCTCGAGCCAGTTGTGTTGCTGCCTCTGACATTACCTC
CGATTATCTCCGAAATCTCTACCTCAATAATGTAATTCATTATATAGTATGAATGTCTTCAGTCA
AGATTCAACTAAGAGGCGCGTAGCGGTCAGGCAGTAGTTCTTTCCTCGGTTTATGGGCAGCATCG
CTCTCCGAATCTCCCAGCCAGTCTGAAAGCTCGTCTTGAAGCAAC
Found at i:610555 original size:19 final size:16
Alignment explanation
Indices: 610514--610544 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
610504 CATTCTCATT
610514 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
610530 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
610545 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 610014 -- 610513
CCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 610545 -- 611044
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCAAT
CCGTCAAACCTTGATCCCTTCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCATC
AATTGACGTTGGTTCGGGGGCATTTTGCCGGGATAGGCCATCTTGACTTCTTTGATCCCCCAAAC
CTTCTTTCTTTCCTGCCTTGCCTTTCCTCAAGTACATCTCCTCTCGAGCCAGTTGTGTTGCTGCC
TCTGACATTACCTCCGATTATCTCCGAAATCTCTACCTCAATAATGTAATTCATTATATAGTATG
AATGTCTTCAGTCAAGATTCAACTAAGAGGCGCGTAGCGGTCAGGCAGTAGTTCTTTCCTCGGTT
TATGGGCAGCATCGCTCTCCGAATCTCCCAGCCAGTCTGAAAGCTCGTCTTGAAGCAACGAGTTC
CATAAACGAGCTATATACTTGACGCGAGTATAAGAGACAGCAGGT
Done.