Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 19 of 20
Found at i:561482 original size:19 final size:19
Alignment explanation
Indices: 561458--561523 Score: 78
Period size: 19 Copynumber: 3.2 Consensus size: 19
561448 ACCAAAAATG
561458 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTGTCTT
*
561477 GAAAGGTCAGGACTGATTTTTCTT
1 GAAAGGTCAAGACTG-----TCTT
561501 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTGTCTT
561520 GAAA
1 GAAA
561524 TCAGTACTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 22 0.55
24 18 0.45
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (19 bp):
GAAAGGTCAAGACTGTCTT
Left flanking sequence: Indices 560958 -- 561457
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 561524 -- 562023
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTC
TTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
Found at i:561653 original size:81 final size:81
Alignment explanation
Indices: 561546--561709 Score: 274
Period size: 81 Copynumber: 2.0 Consensus size: 81
561536 TTATCAAAAA
*
561546 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
561611 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * *
561627 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
561692 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
561708 GG
1 GG
561710 AAAGGTCAAG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 561046 -- 561545
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAG
GACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 561710 -- 562209
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
Found at i:561691 original size:19 final size:19
Alignment explanation
Indices: 561667--561742 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
561657 ACCTTACCAA
561667 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
561686 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
561710 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
561729 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
561743 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 561167 -- 561666
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 561743 -- 562242
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
Found at i:561694 original size:124 final size:124
Alignment explanation
Indices: 561459--561745 Score: 348
Period size: 124 Copynumber: 2.3 Consensus size: 124
561449 CCAAAAATGG
* *
561459 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT---AGGTCAAGACTGTCTTCAAA
* *
561524 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
63 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAACCTT-CCAA
* * * * *
561586 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-GGTCAAGACTGTATTTCAAGGT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAGGTCAAGACTGT-CTTCAA-AT
* ** ***
561649 CAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTTCTGG
64 CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGAACCTTCCAA
561710 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
561746 ATGGAAGGAC
Statistics
Matches: 138, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
122 12 0.09
123 9 0.07
124 76 0.55
125 4 0.03
126 1 0.01
127 36 0.26
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (124 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAGGTCAAGACTGTCTTCAAATCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAACCTTCCAA
Left flanking sequence: Indices 560959 -- 561458
TGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
AAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 561746 -- 562245
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
Found at i:561742 original size:43 final size:43
Alignment explanation
Indices: 561459--561745 Score: 281
Period size: 43 Copynumber: 6.8 Consensus size: 43
561449 CCAAAAATGG
* **
561459 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAA
* * *
561502 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-AA
* ** *
561543 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTAA
* * *
561586 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT--
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAA
* ** * *
561627 ---GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTAA
**
561667 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAA
561710 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
561746 ATGGAAGGAC
Statistics
Matches: 198, Mismatches: 32, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
37 3 0.02
38 26 0.13
40 3 0.02
41 25 0.13
42 11 0.06
43 123 0.62
44 7 0.04
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAA
Left flanking sequence: Indices 560959 -- 561458
TGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
AAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 561746 -- 562245
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
Found at i:561883 original size:43 final size:43
Alignment explanation
Indices: 561820--561975 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 43
561810 TTGTATGTCA
* * * *
561820 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* *
561863 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* * * *
561901 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTTCACAG
561939 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
561976 GAAAGGTCAG
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 20 0.24
39 5 0.06
41 1 0.01
43 43 0.51
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 561320 -- 561819
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 561976 -- 562475
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCA
TACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTCCTTATGGAAAA
GTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGG
Found at i:562069 original size:95 final size:99
Alignment explanation
Indices: 561958--562151 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
561948 ACCTTACCAA
* *
561958 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
562019 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
562053 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
562118 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
562152 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 561458 -- 561957
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 562152 -- 562651
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATA
CCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGT
CAGGACTCCTTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
Found at i:562096 original size:24 final size:24
Alignment explanation
Indices: 562067--562112 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
562057 GTCAAGACTG
562067 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
562091 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
562113 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 561567 -- 562066
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
AGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 562113 -- 562612
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAA
ACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTCCTTATGGAAAAGTCAGGA
AGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Found at i:562152 original size:28 final size:28
Alignment explanation
Indices: 562120--562277 Score: 291
Period size: 28 Copynumber: 5.6 Consensus size: 28
562110 ATTGCAATTC
562120 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
562148 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
562176 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
562204 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
562232 AATGCCATTAGTACTCACTTGAC-AACAA
1 AATGCCATTAGTACTCACTTGACAAAC-A
*
562260 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
562278 CATACCAACA
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
27 3 0.02
28 125 0.98
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 561620 -- 562119
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 562278 -- 562777
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAAC
AGGTCAGGACTCCTTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTTAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
Found at i:562834 original size:28 final size:28
Alignment explanation
Indices: 562800--562900 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
562790 TTGCAATTGT
562800 ATGCCATGAGTACTCACTTGACAAACAA
1 ATGCCATGAGTACTCACTTGACAAACAA
562828 ATGCCATGAGTACTCACTTGACAAACAA
1 ATGCCATGAGTACTCACTTGACAAACAA
*
562856 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATGAGTACTCACTTG-ACAAACAA
* *
562884 ATGCCATTAGTGCTCAC
1 ATGCCATGAGTACTCAC
562901 CATACCAACA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
27 2 0.03
28 68 0.97
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.24
Consensus pattern (28 bp):
ATGCCATGAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 562300 -- 562799
ATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTCCTTATGGAAA
AGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGA
CTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 562901 -- 563400
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCATGAAAAGTGAAAAAGAAGGCTTTGCTGACTT
TGCTCTGGCCTTATCTGACTTATCTGACCTTCAGAAGCTTCAACAATTCCATTTTCCTTCAAGAT
CAGATTGAAAGGATCTGAAAATCTGATGAGTGAATGCCAACTATCAGATTGAAAGGAGTGCTGAT
TGAGGCAAAATGAGATTCACTATGTACCTTGATGTCCTTGAAAGTCCAAAAAGGCAAAGCCAAAA
CTTTGCGAGTGTGCTTATGAAAAGTCAAATGGTAGGCACTAATGCCATTCAAAGTTGCGAGTGCT
TTGTCGATTCGCTTTGCGAGTGCTTTCTGAAAGAAGGGAACTCGTAAAGGTAACATAGTGAATTT
TGTCTGAGATAAGCACTCAGACTTCGCTTTGCGAGTGCTTTGTGG
Found at i:564510 original size:55 final size:55
Alignment explanation
Indices: 564422--564527 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
564412 CAGATTCTTG
* *
564422 GTATGGTCAGCACTAATGGCATACAATTCCAATTCTTGAAGGCATACAATTTGTT
1 GTATGGTCAGCACTAATGGCATACAATTCCAATTATGGAAGGCATACAATTTGTT
* *
564477 GTATGGTCAGCA-TGAATGGCAT-CTCATTGCAATTATGGAAGGCATACAATT
1 GTATGGTCAGCACT-AATGGCATAC-AATTCCAATTATGGAAGGCATACAATT
564528 GCCATGGGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
54 2 0.04
55 43 0.96
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (55 bp):
GTATGGTCAGCACTAATGGCATACAATTCCAATTATGGAAGGCATACAATTTGTT
Left flanking sequence: Indices 563922 -- 564421
CGAGTTTTCAACGCTGGGATCATCCCTACGCCGGAAGCGGTGGAAGGCTTTCTTGGACACATTTA
TCCGGAAACGGGGCCCACTCACTCTAGTATAGCTCCGGAGGGTGGGGCGTGACTCTGAAGCGGGC
GGGCAATCACGGACGCTAAACCATGGCCAACTGCTAGCGGTGATATGATAGTCGCCAGCAGGAAC
TAAACCCAAGGCTTGGCTTGTATTCCGACGCGGAAGAAACTCCGGGCACGAGGCACGTTGGAAGT
TCATGGTACTTCCTACATCAGCCGTGATTCTCGGATTAGACACAGACACAAAAGGCGAACGAGGT
TCTTAGCCTTTCCCTTAAAGAAGGGTCTAGATGCTGGTCCTTCGATTCTATTAAAATTTCATGGA
GTAAGATTTTTTCCGGAATGGTTGTCATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGA
AGTGATTCAGGTCAGAGCAAAGCAGAGTGCTGATTCAGATTCTTG
Right flanking sequence: Indices 564528 -- 565027
GCCATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTT
GTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTA
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTT
TTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAA
AAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATAACCTT
TCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTTTTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
Found at i:564784 original size:28 final size:29
Alignment explanation
Indices: 564752--564824 Score: 123
Period size: 28 Copynumber: 2.6 Consensus size: 29
564742 TGTTGGTATG
*
564752 GTGAGCACTAATGGCATTTTG-TTGTCAA
1 GTGAGTACTAATGGCATTTTGTTTGTCAA
564780 GTGAGTACTAATGGCA-TTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTTGTTTGTCAA
564808 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
564825 ACAATTGTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 4 0.10
28 38 0.90
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (29 bp):
GTGAGTACTAATGGCATTTTGTTTGTCAA
Left flanking sequence: Indices 564252 -- 564751
GCCTTTCCCTTAAAGAAGGGTCTAGATGCTGGTCCTTCGATTCTATTAAAATTTCATGGAGTAAG
ATTTTTTCCGGAATGGTTGTCATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGA
TTCAGGTCAGAGCAAAGCAGAGTGCTGATTCAGATTCTTGGTATGGTCAGCACTAATGGCATACA
ATTCCAATTCTTGAAGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTA
TGGAAGGCATACAATTGCCATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAA
TGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 564825 -- 565324
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTA
AAGAGAGTCCTGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAA
TGTTATGGAAAGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
Found at i:564832 original size:28 final size:28
Alignment explanation
Indices: 564773--564834 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
564763 TGGCATTTTG
****
564773 TTGTCAAGTGAGTACTAATGGCATTTGT
1 TTGTCAAGTGAGTACTAATGGCATACAA
564801 TTGTCAAGTGAGTACTAATGGCATACAA
1 TTGTCAAGTGAGTACTAATGGCATACAA
564829 TTGTCA
1 TTGTCA
564835 TGAGTCCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (28 bp):
TTGTCAAGTGAGTACTAATGGCATACAA
Left flanking sequence: Indices 564273 -- 564772
CTAGATGCTGGTCCTTCGATTCTATTAAAATTTCATGGAGTAAGATTTTTTCCGGAATGGTTGTC
ATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCAGA
GTGCTGATTCAGATTCTTGGTATGGTCAGCACTAATGGCATACAATTCCAATTCTTGAAGGCATA
CAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATTGCCAT
GGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTCTT
GTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTG
AGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGT
ATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTG
Right flanking sequence: Indices 564835 -- 565334
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGTCC
TGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAA
AGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
Found at i:564862 original size:19 final size:19
Alignment explanation
Indices: 564836--564908 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
564826 CAATTGTCAT
564836 GAGTCCTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
* * * *
564855 GGGTCCTGTCCTTCCATAAT
1 GAGTCCTGACCTTTCA-AAA
564875 GAGTCCTGACCTTT-AAAGA
1 GAGTCCTGACCTTTCAAA-A
564894 GAGTCCTGACCTTTC
1 GAGTCCTGACCTTTC
564909 CATAACCTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
18 2 0.05
19 28 0.65
20 13 0.30
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (19 bp):
GAGTCCTGACCTTTCAAAA
Left flanking sequence: Indices 564336 -- 564835
TCATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCA
GAGTGCTGATTCAGATTCTTGGTATGGTCAGCACTAATGGCATACAATTCCAATTCTTGAAGGCA
TACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATTGCC
ATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTC
TTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTG
GTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCAT
Right flanking sequence: Indices 564909 -- 565408
CATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTA
CTTTTTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
Found at i:564888 original size:39 final size:40
Alignment explanation
Indices: 564834--564913 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
564824 TACAATTGTC
* *
564834 ATGAGTCCTGACCTTTCAAA-AGGGTCCTGTCC-TTCCATA
1 ATGAGTCCTGACCTTT-AAAGAGAGTCCTGACCTTTCCATA
564873 ATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATA
1 ATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATA
564913 A
1 A
564914 CCTTTCCATG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 3 0.08
39 26 0.70
40 8 0.22
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (40 bp):
ATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATA
Left flanking sequence: Indices 564334 -- 564833
TGTCATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAG
CAGAGTGCTGATTCAGATTCTTGGTATGGTCAGCACTAATGGCATACAATTCCAATTCTTGAAGG
CATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATTG
CCATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
TCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTT
TGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
Right flanking sequence: Indices 564914 -- 565413
CCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTTT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
Found at i:565084 original size:43 final size:42
Alignment explanation
Indices: 565023--565659 Score: 332
Period size: 43 Copynumber: 15.0 Consensus size: 42
565013 ATTAGTACTC
* *
565023 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* *
565066 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* *
565109 ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
565152 ATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
565195 ATTCTTCT-TGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGAC---TG
** * * *** * * * * *
565238 AGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACT-GTCTTGAAAG---TCAGGACTG
* *
565289 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* * *
565332 ACCTTACCAAAAAGATCAAGACTATC-TG--A-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* * * * *
565370 A--TTCTTC----TGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
*
565408 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* *
565451 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-TCAGTACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* *** * *
565492 ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAG-TCAGGACTG
* * * * * *
565535 A--TTCTTC----TGGTCAATACTGTATTTCAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
*
565573 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
565616 ATTCTTCT-TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
565659 A
1 A
565660 TTCTTCTGGA
Statistics
Matches: 462, Mismatches: 87, Indels: 90
0.72 0.14 0.14
Matches are distributed among these distances:
33 10 0.02
35 1 0.00
36 2 0.00
37 2 0.00
38 38 0.08
39 8 0.02
40 18 0.04
41 38 0.08
42 15 0.03
43 282 0.61
44 7 0.02
45 9 0.02
46 4 0.01
47 3 0.01
49 10 0.02
50 2 0.00
51 3 0.01
52 4 0.01
54 6 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (42 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
Left flanking sequence: Indices 564523 -- 565022
CAATTGCCATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGA
GTCTTGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTA
TGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCAC
CTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCT
TTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATA
ACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTT
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 565660 -- 566159
TTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACT
GTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTC
Found at i:565088 original size:24 final size:24
Alignment explanation
Indices: 565023--565132 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 24
565013 ATTAGTACTC
565023 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
565047 -TCTT-TC--ACA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
565066 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
565090 -TCTT-TC--AAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTG
* *
565109 ACCTGACCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
565133 TCTTGAAAGG
Statistics
Matches: 62, Mismatches: 14, Indels: 20
0.65 0.15 0.21
Matches are distributed among these distances:
19 17 0.27
20 10 0.16
21 3 0.05
22 4 0.06
23 11 0.18
24 17 0.27
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 564523 -- 565022
CAATTGCCATGGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGA
GTCTTGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTA
TGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCAC
CTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCT
TTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATA
ACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTT
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 565133 -- 565632
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
Found at i:565143 original size:19 final size:19
Alignment explanation
Indices: 565119--565233 Score: 92
Period size: 24 Copynumber: 5.7 Consensus size: 19
565109 ACCTGACCAA
565119 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
565138 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
565162 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
565181 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
565205 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
565221 AAAGGTCAGGACT
1 AAAGGTCAAGACT
565234 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 13 0.16
17 2 0.03
19 27 0.34
20 1 0.01
21 3 0.04
22 3 0.04
23 1 0.01
24 30 0.38
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 564619 -- 565118
CCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGT
ATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGT
CCTGACCTTTAAAGAGAGTCCTGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGAC
GATTTCCTGAATGTTATGGAAAGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 565234 -- 565733
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATG
GAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
Found at i:565164 original size:24 final size:23
Alignment explanation
Indices: 565119--565217 Score: 106
Period size: 24 Copynumber: 4.6 Consensus size: 23
565109 ACCTGACCAA
565119 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
565138 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCT-G
565162 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
565181 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATTCTTC-TG
565205 AAAGGTCAAGACT
1 AAAGGTCAAGACT
565218 CTGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 1 0.02
24 28 0.42
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTCTTCTG
Left flanking sequence: Indices 564619 -- 565118
CCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGT
ATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGT
CCTGACCTTTAAAGAGAGTCCTGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGAC
GATTTCCTGAATGTTATGGAAAGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 565218 -- 565717
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTG
Found at i:565224 original size:16 final size:16
Alignment explanation
Indices: 565203--565233 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
565193 TGATTCTTCT
565203 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
565219 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
565234 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 564703 -- 565202
TTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCA
TTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGT
CATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGT
CCTGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGG
AAAGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 565234 -- 565733
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATG
GAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
Found at i:565430 original size:24 final size:24
Alignment explanation
Indices: 565398--565474 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 24
565388 GTATTTCACA
*
565398 GTCAGGACTGACCTTACCAAAAAG
1 GTCAAGACTGACCTTACCAAAAAG
* *
565422 GTCAAGACTG-TCTT----GAAAG
1 GTCAAGACTGACCTTACCAAAAAG
*
565441 GTCAGGACTGACCTTACCAAAAAG
1 GTCAAGACTGACCTTACCAAAAAG
565465 GTCAAGACTG
1 GTCAAGACTG
565475 TCTTGAAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 13 0.32
20 3 0.07
23 3 0.07
24 22 0.54
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (24 bp):
GTCAAGACTGACCTTACCAAAAAG
Left flanking sequence: Indices 564898 -- 565397
CCTGACCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGG
AAAGGTCAGTACTTTTTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
Right flanking sequence: Indices 565475 -- 565974
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGA
Found at i:565442 original size:19 final size:19
Alignment explanation
Indices: 565418--565482 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
565408 ACCTTACCAA
565418 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* * *
565437 AAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
565461 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
565480 AAA
1 AAA
565483 TCAGTACTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
19 16 0.46
20 3 0.09
23 3 0.09
24 13 0.37
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 564918 -- 565417
TCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTTTTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 565483 -- 565982
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAG
GACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGA
AGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAG
Found at i:565544 original size:165 final size:166
Alignment explanation
Indices: 565036--565659 Score: 556
Period size: 165 Copynumber: 3.7 Consensus size: 166
565026 TTATCAAAAA
* * *
565036 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-G
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
* * *
565100 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTGGA
65 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGACCTT-TT-TAGA
* * *
565163 AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
127 AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T
* ** * * * * ** * ***
565204 GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA--TTGAGGAATGACCATCAAGACT
1 ----GGTCAAGA--CTG-TATTTCA-CAGTCA-G-GACTGACCTT-ACCAA-AAAGGTCAAGACT
* * * * * * * *
565267 CAT-TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
54 -GTCTTGAAAG--GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACT
* *** *
565331 AACCTTACCAAAAAGATCAAGACTATC-T----GATCAGGACTGATTCTTCT
115 GACCTTTTTAGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
565378 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* *
565443 CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTTTTTGAAAGA
66 CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTTTTAGAAAGA
565507 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
131 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
*
565543 GGTCAATACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* ***
565607 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
65 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA
565660 TTCTTCTGGA
Statistics
Matches: 358, Mismatches: 67, Indels: 59
0.74 0.14 0.12
Matches are distributed among these distances:
160 28 0.08
161 6 0.02
162 32 0.09
163 1 0.00
164 20 0.06
165 117 0.33
166 8 0.02
167 13 0.04
168 3 0.01
170 8 0.02
172 8 0.02
174 4 0.01
175 20 0.06
176 5 0.01
177 7 0.02
178 14 0.04
179 2 0.01
180 55 0.15
181 5 0.01
182 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (166 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTTTTAGAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Left flanking sequence: Indices 564536 -- 565035
GAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTCTTGTA
TGGTAAGGTGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAGT
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATG
GTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCC
TGTCCTTCCATAATGAGTCCTGACCTTTAAAGAGAGTCCTGACCTTTCCATAACCTTTCCATGAA
GTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGTACTTTTTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 565660 -- 566159
TTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACT
GTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTC
Found at i:565607 original size:19 final size:19
Alignment explanation
Indices: 565583--565658 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
565573 ACCTTACCAA
565583 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
565602 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
565626 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
565645 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
565659 ATTCTTCTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 565083 -- 565582
AAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 565659 -- 566158
ATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACA
AATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAAC
TGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACT
Found at i:565626 original size:24 final size:24
Alignment explanation
Indices: 565597--565681 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
565587 GTCAAGACTG
565597 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
565621 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
565640 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
565664 TCTGGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
565682 CATTATGGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 18 0.34
24 35 0.66
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 565097 -- 565596
AAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 565682 -- 566181
CATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
CAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
ACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTA
CTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTA
Found at i:565839 original size:76 final size:79
Alignment explanation
Indices: 565747--565903 Score: 239
Period size: 76 Copynumber: 2.0 Consensus size: 79
565737 TTATCAAAAA
565747 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
565809 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
565823 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
565888 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
565904 TGAAAGGTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 52 0.72
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 565247 -- 565746
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 565904 -- 566403
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATAT
GCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTG
TACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTC
AGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
Found at i:565895 original size:43 final size:43
Alignment explanation
Indices: 565725--565896 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
565715 TTGTATGTCA
* * *
565725 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * * *
565768 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
565806 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
565844 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
565887 TCAGGACTGA
1 TCAGGACTGA
565897 TTCTTCTTGA
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 54 0.54
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 565225 -- 565724
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAT
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGA
CTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 565897 -- 566396
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTT
TCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
CTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTG
AAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGA
CTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGA
Found at i:565906 original size:24 final size:23
Alignment explanation
Indices: 565877--566010 Score: 84
Period size: 24 Copynumber: 5.8 Consensus size: 23
565867 GTCAAGACTG
565877 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGA-TCT
*
565901 TCTTGAAAGGTCAGGACTCA--T
1 TCTTGAAAGGTCAGGACTGATCT
* * * *
565922 TATGGAAAAGTCAGGAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGG-A---C-TGA-TCT
*
565951 T-TTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATCT
*
565969 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGA-TCT
565993 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
566011 CATTGCAATT
Statistics
Matches: 84, Mismatches: 12, Indels: 28
0.68 0.10 0.23
Matches are distributed among these distances:
18 1 0.01
19 15 0.18
21 13 0.15
22 1 0.01
23 1 0.01
24 38 0.45
25 1 0.01
26 1 0.01
27 1 0.01
28 10 0.12
29 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATCT
Left flanking sequence: Indices 565377 -- 565876
TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 566011 -- 566510
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGG
AAAGGTCAGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Found at i:565961 original size:19 final size:19
Alignment explanation
Indices: 565937--566011 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
565927 AAAAGTCAGG
565937 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
* * *
565956 AAGGTCAAGACTGTCTTGA
1 AAGGTCAGGACTCTTTTGA
565975 AAGGTCAGGACTCATTCTTCTTGA
1 AAGGTCAGGA--C--TCTT-TTGA
565999 AAGGTCAGGACTC
1 AAGGTCAGGACTC
566012 ATTGCAATTG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
19 25 0.56
20 2 0.04
21 1 0.02
22 1 0.02
23 2 0.04
24 14 0.31
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (19 bp):
AAGGTCAGGACTCTTTTGA
Left flanking sequence: Indices 565437 -- 565936
AAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTG
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTC
AGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 566012 -- 566511
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGA
AAGGTCAGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTA
CCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
Found at i:566011 original size:24 final size:24
Alignment explanation
Indices: 565969--566014 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
565959 GTCAAGACTG
565969 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
565993 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
566015 GCAATTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 565469 -- 565968
AGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACT
GATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTA
TGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTG
Right flanking sequence: Indices 566015 -- 566514
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCAT
ATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAG
GTCAGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCA
AAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
Found at i:566102 original size:20 final size:20
Alignment explanation
Indices: 566077--566158 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
566067 TGACAACAAA
566077 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
566097 ATGCCATTAGTACTAACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
566125 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
566145 ATGCCATTAGTACT
1 ATGCCATTAGTACT
566159 CACTGTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 565577 -- 566076
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 566159 -- 566658
CACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAA
AGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACT
CTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCA
GGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
Found at i:566193 original size:48 final size:48
Alignment explanation
Indices: 566075--566186 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
566065 CTTGACAACA
*
566075 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
*
566123 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
* *
566171 CAATGTCATTAGTACT
1 AAATGCCATTAGTACT
566187 CACCATACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (48 bp):
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
Left flanking sequence: Indices 565575 -- 566074
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
Right flanking sequence: Indices 566187 -- 566686
CACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
AAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGA
Found at i:566226 original size:16 final size:16
Alignment explanation
Indices: 566205--566235 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
566195 CAAAAAGATG
566205 GAAAGGTCAGGACTCT
1 GAAAGGTCAGGACTCT
566221 GAAAGGTCAGGACTC
1 GAAAGGTCAGGACTC
566236 ATGAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.32, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAGGACTCT
Left flanking sequence: Indices 565705 -- 566204
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCC
ATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTC
ACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATG
Right flanking sequence: Indices 566236 -- 566735
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGT
CAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCT
Found at i:566394 original size:43 final size:43
Alignment explanation
Indices: 566330--566485 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 43
566320 TTGTATGTCA
* * *
566330 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
566373 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
** * *
566411 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
*
566449 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
566486 GAAAGGTCAG
Statistics
Matches: 83, Mismatches: 18, Indels: 24
0.66 0.14 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 16 0.19
39 6 0.07
41 1 0.01
43 44 0.53
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 565830 -- 566329
ACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTAC
TTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTC
TGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 566486 -- 566985
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCA
GAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAA
CAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACT
Found at i:566511 original size:24 final size:22
Alignment explanation
Indices: 566482--566544 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 22
566472 GTCAAGACTG
566482 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTC--TCT
*
566506 TCTTGAAAGGTGAGGA--CTCT
1 TCTTGAAAGGTCAGGACTCTCT
566526 T-TTGAAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGGACTCT
566545 GAAAGGTCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
19 13 0.37
20 4 0.11
21 2 0.06
22 1 0.03
24 15 0.43
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTCTCT
Left flanking sequence: Indices 565982 -- 566481
GGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAA
CAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTA
ACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGT
CATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTCATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 566545 -- 567044
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTG
TACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAAC
AGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGAC
Found at i:566532 original size:19 final size:20
Alignment explanation
Indices: 566468--566544 Score: 77
Period size: 19 Copynumber: 3.8 Consensus size: 20
566458 ACCTTACCAA
* *
566468 AAAGGTCAAGACT-GTCTTG
1 AAAGGTCAGGACTCTTCTTG
566487 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAGGA--C--TCTTCTTG
*
566511 AAAGGTGAGGACTCTT-TTG
1 AAAGGTCAGGACTCTTCTTG
566530 AAAGGTCAGGACTCT
1 AAAGGTCAGGACTCT
566545 GAAAGGTCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
19 27 0.55
20 4 0.08
21 1 0.02
22 1 0.02
23 1 0.02
24 15 0.31
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (20 bp):
AAAGGTCAGGACTCTTCTTG
Left flanking sequence: Indices 565968 -- 566467
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAG
TACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATA
TGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGT
CAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCT
GGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 566545 -- 567044
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTG
TACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAAC
AGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGAC
Found at i:566549 original size:16 final size:17
Alignment explanation
Indices: 566506--566558 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 17
566496 GACTCATTCT
*
566506 TCTTGAAAGGTGAGGAC
1 TCTTGAAAGGTCAGGAC
566523 TCTTTTGAAAGGTCAGGAC
1 TC--TTGAAAGGTCAGGAC
566542 TC-TGAAAGGTCAGGAC
1 TCTTGAAAGGTCAGGAC
566558 T
1 T
566559 AATGAGAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 15 0.45
17 2 0.06
19 16 0.48
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (17 bp):
TCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 566006 -- 566505
GGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGAC
AACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGT
ACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAA
GATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTC
ACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
Right flanking sequence: Indices 566559 -- 567058
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCT
TCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
AACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTC
ATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTC
TGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
Found at i:566612 original size:76 final size:76
Alignment explanation
Indices: 566518--566661 Score: 288
Period size: 76 Copynumber: 1.9 Consensus size: 76
566508 TTGAAAGGTG
566518 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
1 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
566583 AGATTCCATAC
66 AGATTCCATAC
566594 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
1 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
566659 AGA
66 AGA
566662 ACTCACCTTC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (76 bp):
AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
AGATTCCATAC
Left flanking sequence: Indices 566018 -- 566517
ATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATG
CCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTC
AGGACTCTGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAA
AGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTG
Right flanking sequence: Indices 566662 -- 567161
ACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGA
CTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCA
TTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTC
ACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGAT
GAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
Found at i:566625 original size:16 final size:16
Alignment explanation
Indices: 566604--566634 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
566594 AGGACTCTTT
566604 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
566620 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
566635 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 566104 -- 566603
TAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAA
ACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGAC
TCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAG
GTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTT
Right flanking sequence: Indices 566635 -- 567134
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTA
TGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCA
CTGTACAAACAAATTTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGG
Found at i:566703 original size:43 final size:43
Alignment explanation
Indices: 566655--566736 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
566645 ATTGAGGAAA
* *
566655 AGTCAGAACTCACCTT-CTCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTAC-CAAAAAGATCAAGACTGTCTTTCAC
*
566698 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
566737 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 566155 -- 566654
TACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTC
TGAAAGGTCAGGACTCATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 566737 -- 567236
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCA
CTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAA
AACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Found at i:566829 original size:28 final size:28
Alignment explanation
Indices: 566806--566988 Score: 196
Period size: 28 Copynumber: 6.6 Consensus size: 28
566796 TGACAATTGT
*
566806 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
566834 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
566862 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
566890 TTG-TA-T-GTCTCTCACTTGACAACAAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
*
566916 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
* *
566944 ATGTCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
**
566972 ATTTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
566989 CATACCAAAA
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
25 2 0.01
26 19 0.14
27 4 0.03
28 111 0.80
29 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 566306 -- 566805
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 566989 -- 567488
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
Found at i:566908 original size:82 final size:83
Alignment explanation
Indices: 566818--566974 Score: 234
Period size: 82 Copynumber: 1.9 Consensus size: 83
566808 GCCATTAGTA
566818 CTCACTTGACAA-ACAAATGCCATTAGTACTCACT-TGAC-AACAAAATGCCATTAGTACTCACT
1 CTCACTTGACAACA-AAATGCCATTAGTACTCACTGT-ACAAAC-AAATGCCATTAGTACTCACT
566880 -TGAC-AACAAATTGTATGTCT
63 GT-ACAAACAAATTGTATGTCT
*
566900 CTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACTGTA
1 CTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTA
566965 CAAACAAATT
66 CAAACAAATT
566975 TCATTAGTAC
Statistics
Matches: 69, Mismatches: 1, Indels: 9
0.87 0.01 0.11
Matches are distributed among these distances:
82 55 0.80
83 14 0.20
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.27
Consensus pattern (83 bp):
CTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATTGTATGTCT
Left flanking sequence: Indices 566318 -- 566817
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGA
CCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTA
Right flanking sequence: Indices 566975 -- 567474
TCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCA
TACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
Found at i:566923 original size:54 final size:56
Alignment explanation
Indices: 566806--566988 Score: 227
Period size: 56 Copynumber: 3.3 Consensus size: 56
566796 TGACAATTGT
566806 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
* *
566862 ATGCCATTAGTACTCACTTGAC-AACAAATTG-TA-T-GTCTCTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGCCATTAGT-ACTCACTTGACAACAAA
*
566916 ATGCCATTAGTACTCAC-TGTACAAACAAATGTCATTAGTACTCAC-TGTACAA-ACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAAATGCCATTAGTACTCACTTG-ACAACA-AA
**
566972 ATTTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
566989 CATACCAAAA
Statistics
Matches: 112, Mismatches: 6, Indels: 18
0.82 0.04 0.13
Matches are distributed among these distances:
53 4 0.04
54 38 0.34
55 17 0.15
56 51 0.46
57 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 566306 -- 566805
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 566989 -- 567488
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
Found at i:567024 original size:19 final size:17
Alignment explanation
Indices: 567000--567045 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
566990 ATACCAAAAC
567000 AGGTCAGGACTGTCTGGAA
1 AGGTCAGGACT-TCT-GAA
*
567019 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
567035 AGGTCAGGACT
1 AGGTCAGGACT
567046 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 566500 -- 566999
CATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGT
ACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 567046 -- 567545
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTAC
Found at i:567176 original size:64 final size:64
Alignment explanation
Indices: 567071--567206 Score: 202
Period size: 64 Copynumber: 2.1 Consensus size: 64
567061 GGAATGACCA
* *
567071 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGT-TTTGAAAGG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAA-G
* * *
567135 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAG
*
567199 TCAGGACT
1 TCAAGACT
567207 AACCTTACCA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 59 0.91
65 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 566571 -- 567070
TGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCAC
TGTACAAACAAATTTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 567207 -- 567706
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
Found at i:567221 original size:43 final size:42
Alignment explanation
Indices: 567156--567325 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
567146 TTGTATGTCA
* * *
567156 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
567199 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** *
567237 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
567275 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
567318 TCAGGACT
1 TCAGGACT
567326 TTTGATGGAA
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 16 0.16
39 6 0.06
41 1 0.01
42 5 0.05
43 52 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 566656 -- 567155
GTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTA
GTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 567326 -- 567825
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
Found at i:567304 original size:76 final size:78
Alignment explanation
Indices: 567178--567620 Score: 323
Period size: 76 Copynumber: 5.4 Consensus size: 78
567168 TTATCAAAAA
* * *
567178 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
567241 GACTGATTCTTCT
66 GACTGATTCTTCT
567254 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
**
567319 CAGGACT--TT-TGAT
63 CAGGACTGATTCTTCT
* * * * * * *
567332 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTGACCTTACC---AA---AAAGGT
* * *
567395 CAAGACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
47 CAAGACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
567433 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
567496 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
567509 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
567574 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
*
567590 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACTGA
567621 TTATGGAAGG
Statistics
Matches: 289, Mismatches: 37, Indels: 77
0.72 0.09 0.19
Matches are distributed among these distances:
76 106 0.37
77 7 0.02
78 5 0.02
79 7 0.02
80 6 0.02
81 63 0.22
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.04
90 13 0.04
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
97 2 0.01
98 5 0.02
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 566678 -- 567177
AGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGA
TCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTAC
AAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAACAGG
TCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 567621 -- 568120
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGT
ATGTCCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACT
Found at i:567435 original size:41 final size:43
Alignment explanation
Indices: 567389--567580 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
567379 CCAAAAATGG
* * * *
567389 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
567430 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
567473 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
567508 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
567549 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
567581 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 566889 -- 567388
ATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAG
TACTCACTGTACAAACAAATTTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 567581 -- 568080
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTATGTC
Found at i:567534 original size:38 final size:38
Alignment explanation
Indices: 567492--567622 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
567482 GACTATCTGA
* **
567492 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
567530 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
567573 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
567611 TCAGGACTGATT
1 TCAGGACTGATT
567623 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 566992 -- 567491
ACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGA
CTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 567623 -- 568122
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTAT
GTCCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCT
Found at i:567573 original size:19 final size:19
Alignment explanation
Indices: 567549--567619 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
567539 ACCTTACCAA
567549 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
567568 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
567588 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
567606 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
567620 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 567049 -- 567548
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 567620 -- 568119
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTG
TATGTCCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGAC
Found at i:567760 original size:43 final size:42
Alignment explanation
Indices: 567697--567866 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
567687 TTGTATGTCA
* * * *
567697 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
567740 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
567778 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
567816 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
567859 TCAGGACT
1 TCAGGACT
567867 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 567197 -- 567696
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 567867 -- 568366
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATA
AAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTATGTCCATACCAAACA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
Found at i:567792 original size:286 final size:291
Alignment explanation
Indices: 567297--567866 Score: 940
Period size: 286 Copynumber: 2.0 Consensus size: 291
567287 TTACCAAAAA
*
567297 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* * *
567362 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
66 CATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
567427 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
567492 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTC
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGATC
567556 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
258 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
567590 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATG
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGTATG
* ** **
567654 CCATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCTTAT
65 CCATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
*
567713 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
567778 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
567843 AGACTGTCTTGAAAGGTCAGGACT
259 AGACTGTCTTGAAAGGTCAGGACT
567867 TTTGATGGAA
Statistics
Matches: 263, Mismatches: 11, Indels: 13
0.92 0.04 0.05
Matches are distributed among these distances:
286 168 0.64
287 4 0.02
288 1 0.00
289 2 0.01
290 1 0.00
292 1 0.00
293 81 0.31
294 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (291 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 566797 -- 567296
GACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGT
ACTCACTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATTTCATTAGTACTCACCAT
ACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGA
CTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
Right flanking sequence: Indices 567867 -- 568366
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATA
AAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTATGTCCATACCAAACA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
Found at i:568115 original size:19 final size:17
Alignment explanation
Indices: 568091--568136 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
568081 CATACCAAAC
568091 AGGTCAGGACTGTCTGGAA
1 AGGTCAGGACT-TCT-GAA
*
568110 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
568126 AGGTCAGGACT
1 AGGTCAGGACT
568137 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 567591 -- 568090
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAG
GACTCACCTTACCATAAAAGACTCATTTGTATGTCCATACCAAAC
Right flanking sequence: Indices 568137 -- 568636
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACT
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTC
ACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGC
CTTCCAAAATCCATGACAATTGCAAATTGATGAGTTCCCTTCTTTCAGAAAGCACGCACTCCTTT
AAAAGAATGGCATTAGTGCAAAGCACACTCGCTGCGCTTTGGCTT
Found at i:568473 original size:28 final size:28
Alignment explanation
Indices: 568278--568463 Score: 347
Period size: 28 Copynumber: 6.6 Consensus size: 28
568268 ATTGCAATTC
568278 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
568306 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
568334 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
568362 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
568390 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
568418 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
568446 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
568464 CATACCAACA
Statistics
Matches: 156, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
27 2 0.01
28 154 0.99
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 567778 -- 568277
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
CAGGTCAGGACTCACCTTACCATAAAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTG
TCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATAAAAGAC
TCATTTGTATGTCCATACCAAACAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 568464 -- 568963
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGAGTTCCCTTCTTTCAGAAAGCACGCACTCCTTTAA
AAGAATGGCATTAGTGCAAAGCACACTCGCTGCGCTTTGGCTTTCAAAGAGTGCTTTGTGGGCTT
TGCTCGTCAAAATGACGTGACGTTGATCAAAGCACTCGCTTTTCATTGCGTCAGGGCTTTGCTCG
AACCTCATTGTTTGAACTATTTACGACGTTTCCTGGGGAGTCGGCATCCATTATGTGGAAGTTGG
GTCACATCGTGGATGTACATAATGTTAGATGGCTGTCCTACTCCTTCACTTCGCTTACACTCCGA
AAAGGTATAACCTTCTCTCCAGCTCAAGATCACTGCTTTCTTTTTCCTGAAATAAGTGGATCCTT
TCACTTTCATTACAACCGACTTCATCCCCATCTTTCTGGCGGATC
Found at i:570209 original size:43 final size:42
Alignment explanation
Indices: 570162--570490 Score: 219
Period size: 43 Copynumber: 7.8 Consensus size: 42
570152 CTCACCTTTT
* *
570162 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAG-TCAGGACTGATTCTTC
* * * * *
570205 TTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGA-CCTTA
1 TTGAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGATTCTTC
** * * **
570247 TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTTAC
1 T-TGAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-C
***
570291 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTC
*
570334 -T----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
1 TTGAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTC
* * *
570372 TTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGA-CCTTA
1 TTGAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTC
** * * ** *
570412 TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTGAC
1 T-TGAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCT-TC
***
570456 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 TTGAAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
570491 TTTGATGGAA
Statistics
Matches: 236, Mismatches: 32, Indels: 36
0.78 0.11 0.12
Matches are distributed among these distances:
38 36 0.15
39 1 0.00
40 3 0.01
41 25 0.11
42 18 0.08
43 144 0.61
44 9 0.04
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (42 bp):
TTGAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTC
Left flanking sequence: Indices 569662 -- 570161
CTTAGAGAGTGTTGCCTGCGAGCGAAGTTGACTACGACGCCTAACCTAAAAGCGAGTGTAGACTC
TGAGCCTACTGCGTGCTATGCAAGCTGTAACTGCAAGCAGGATACAACGTCCATACGTCAGGTAC
ATGTGCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAA
GCTCTGACGGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGG
TCAGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAG
TCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCT
GAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGA
CTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTT
Right flanking sequence: Indices 570491 -- 570990
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCC
Found at i:570263 original size:24 final size:24
Alignment explanation
Indices: 570231--570307 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
570221 GTATTTCACA
*
570231 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
* *
570255 GTCAAGACTG-TCTT-TC--ACA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
570274 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
570298 GTCAAGACTG
1 GTCAAGACTG
570308 TCTTGAAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 5 0.13
24 17 0.45
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 569731 -- 570230
CCTACTGCGTGCTATGCAAGCTGTAACTGCAAGCAGGATACAACGTCCATACGTCAGGTACATGT
GCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAGCTC
TGACGGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCAG
ATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAG
CACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAAT
CAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTT
CCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACA
Right flanking sequence: Indices 570308 -- 570807
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
Found at i:570282 original size:19 final size:19
Alignment explanation
Indices: 570212--570282 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
570202 TTCTTGAAAG
*
570212 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
570231 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
570254 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
570274 GTCAGGACT
1 GTCAAGACT
570283 AACCTTACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 569712 -- 570211
AGCGAGTGTAGACTCTGAGCCTACTGCGTGCTATGCAAGCTGTAACTGCAAGCAGGATACAACGT
CCATACGTCAGGTACATGTGCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCT
TCAGGGAAAAGCGAAGCTCTGACGGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGT
TGAAGCTTCTGAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGA
AGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCA
GGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGT
TTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAG
Right flanking sequence: Indices 570283 -- 570782
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAA
Found at i:570318 original size:19 final size:19
Alignment explanation
Indices: 570294--570396 Score: 93
Period size: 19 Copynumber: 5.2 Consensus size: 19
570284 ACCTTACCAA
570294 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
570313 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
570333 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
570351 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
570375 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
570394 AAA
1 AAA
570397 TCAGTACTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.06
19 41 0.61
21 4 0.06
24 18 0.27
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 569794 -- 570293
GTGCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAGC
TCTGACGGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTC
AGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTC
AGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGA
ATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACT
TTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 570397 -- 570896
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
Found at i:570348 original size:38 final size:40
Alignment explanation
Indices: 570296--570396 Score: 152
Period size: 38 Copynumber: 2.5 Consensus size: 40
570286 CTTACCAAAA
570296 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
1 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
*
570335 -GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
1 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
570374 GAAAGGTCAAGACTGTCTTGAAA
1 ---AGGTCAAGACTGTCTTGAAA
570397 TCAGTACTGA
Statistics
Matches: 56, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
38 36 0.64
39 1 0.02
43 19 0.34
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (40 bp):
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
Left flanking sequence: Indices 569796 -- 570295
GCTATGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAGCTC
TGACGGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCAG
ATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAG
CACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAAT
CAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTT
CCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
Right flanking sequence: Indices 570397 -- 570896
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
Found at i:570451 original size:165 final size:167
Alignment explanation
Indices: 570170--570490 Score: 556
Period size: 165 Copynumber: 1.9 Consensus size: 167
570160 TTTTGAAAGA
* *
570170 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCA
1 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTACTTCACAATCA
*
570235 GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGT
66 GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGT
570300 CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
131 CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
* * * *
570337 TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGT-CTTGA-AATCA
1 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTACTTCACAATCA
*
570400 GTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGT
66 GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGT
570465 CAAGACTGTCTTGAAAGGTCAGGACT
131 CAAGACTGTCTTGAAAGGTCAGGACT
570491 TTTGATGGAA
Statistics
Matches: 146, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
165 93 0.64
166 3 0.02
167 50 0.34
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (167 bp):
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTACTTCACAATCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 569670 -- 570169
GTGTTGCCTGCGAGCGAAGTTGACTACGACGCCTAACCTAAAAGCGAGTGTAGACTCTGAGCCTA
CTGCGTGCTATGCAAGCTGTAACTGCAAGCAGGATACAACGTCCATACGTCAGGTACATGTGCTA
TGCTATGTCGAAAGCGGTACAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAGCTCTGAC
GGAAATGGCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCAGATAA
GTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACT
AATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGT
GACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTTCCGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGA
Right flanking sequence: Indices 570491 -- 570990
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCC
Found at i:570577 original size:19 final size:19
Alignment explanation
Indices: 570553--570628 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 19
570543 ACCAAAAATG
570553 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTGTCTT
* *
570572 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAAGA--C--T-GTCTT
* *
570596 GAAAGGTCAGGACTGTCTG
1 GAAAGGTCAAGACTGTCTT
570615 GAAAGGTCAAGACT
1 GAAAGGTCAAGACT
570629 CATTTGTATG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 27 0.57
20 1 0.02
21 1 0.02
22 1 0.02
23 1 0.02
24 16 0.34
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (19 bp):
GAAAGGTCAAGACTGTCTT
Left flanking sequence: Indices 570053 -- 570552
AATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGAC
TTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTT
GAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 570629 -- 571128
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTATAGTACTCACTGTACAAACAAATGCCATTA
GTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGC
Found at i:570707 original size:43 final size:43
Alignment explanation
Indices: 570642--570854 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
570632 TTGTATGTCA
* * *
570642 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
570685 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * *
570723 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
570761 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
570804 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
570847 TCAGGACT
1 TCAGGACT
570855 TTTGATGGAA
Statistics
Matches: 136, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.04
41 1 0.01
42 5 0.04
43 91 0.67
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 570142 -- 570641
GTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTT
GAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGT
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 570855 -- 571354
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTATAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTA
TACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAA
ATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCTCTATTCATGAGCCACTTTGATGA
AATGCAAAGCAAAGTCATGTACGCTGACATGTGCGCTGACCTTGACTTTGAAAATGGCTCGTGAC
GTGACGTGATTGCACAAAGCACTCGCTTTTCAGTGCTCATTACGT
Found at i:570763 original size:19 final size:19
Alignment explanation
Indices: 570741--570811 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
570731 GATTCTTCTG
*
570741 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
570760 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
570783 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
570803 GTCAGGACT
1 GTCAAGACT
570812 AACCTGACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 570241 -- 570740
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 570812 -- 571311
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTATAGTACTCACTGTACAAA
CAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCC
ATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCT
TTGAATGCTTCGCTTTGGCTCTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTAC
GCTGACATGTGCGCTGACCTTGACTTTGAAAATGGCTCGTGACGT
Found at i:570792 original size:24 final size:24
Alignment explanation
Indices: 570760--570836 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
570750 GTCTTTCACA
*
570760 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
570784 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
570803 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
570827 GTCAAGACTG
1 GTCAAGACTG
570837 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 570260 -- 570759
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
Right flanking sequence: Indices 570837 -- 571336
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTATAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATAC
CAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAA
AATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCTCTATT
CATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACATGTGCGCTGACCTTGACT
TTGAAAATGGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCT
Found at i:571018 original size:28 final size:28
Alignment explanation
Indices: 570986--571091 Score: 142
Period size: 28 Copynumber: 3.6 Consensus size: 28
570976 TTGCAATTGT
570986 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
571014 ATGCCATTAGTACTCACT-TGACAAACAA
1 ATGCCATTAGTACTCACTGT-ACAAACAA
571042 ATGCCATTAGTATAGTACTCACTGTACAAACAA
1 ATGCC---A-T-TAGTACTCACTGTACAAACAA
*
571075 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
571092 CATACCAACA
Statistics
Matches: 70, Mismatches: 1, Indels: 14
0.82 0.01 0.16
Matches are distributed among these distances:
27 1 0.01
28 40 0.57
29 1 0.01
30 1 0.01
31 1 0.01
32 1 0.01
33 24 0.34
34 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 570486 -- 570985
GGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 571092 -- 571591
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCT
CTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACATGTGCGCTGACCT
TGACTTTGAAAATGGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTTTCAGTGCTCATTA
CGTTTGGTTGCTTTCAAACGGAGTCAACAGTCAGCGTAGTTTGATAATAACTGCGAAGCAAGCCT
ACATAGGTTGGCTCCCGACCTTCCTTGTTGGAAAGAAACCAGTTGGTGCTTGATTTTGGAGGAAA
ACCCGGCATGCCGCAAAGGGGCTGACTCTGATTCTCGATTACCGTGCCGCCTGGTTTGCGTTGCT
CGGCCAAAAGAAGAAGAAATGTGCTGTGGTGGGAGCGTCCTTACT
Found at i:571058 original size:33 final size:32
Alignment explanation
Indices: 570992--571085 Score: 135
Period size: 33 Copynumber: 3.0 Consensus size: 32
570982 TTGTATGCCA
570992 TTAGTACTCACTGTACAAACAAATGCC---A-
1 TTAGTACTCACTGTACAAACAAATGCCATTAG
571020 TTAGTACTCACT-TGACAAACAAATGCCATTAG
1 TTAGTACTCACTGT-ACAAACAAATGCCATTAG
571052 TATAGTACTCACTGTACAAACAAATGCCATTAG
1 T-TAGTACTCACTGTACAAACAAATGCCATTAG
571085 T
1 T
571086 GCTCACCATA
Statistics
Matches: 59, Mismatches: 0, Indels: 9
0.87 0.00 0.13
Matches are distributed among these distances:
27 1 0.02
28 25 0.42
31 1 0.02
32 1 0.02
33 30 0.51
34 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (32 bp):
TTAGTACTCACTGTACAAACAAATGCCATTAG
Left flanking sequence: Indices 570492 -- 570991
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCA
Right flanking sequence: Indices 571086 -- 571585
GCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGT
ATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCT
TTGGCTCTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACATGTGCGC
TGACCTTGACTTTGAAAATGGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTTTCAGTGC
TCATTACGTTTGGTTGCTTTCAAACGGAGTCAACAGTCAGCGTAGTTTGATAATAACTGCGAAGC
AAGCCTACATAGGTTGGCTCCCGACCTTCCTTGTTGGAAAGAAACCAGTTGGTGCTTGATTTTGG
AGGAAAACCCGGCATGCCGCAAAGGGGCTGACTCTGATTCTCGATTACCGTGCCGCCTGGTTTGC
GTTGCTCGGCCAAAAGAAGAAGAAATGTGCTGTGGTGGGAGCGTC
Found at i:572605 original size:28 final size:28
Alignment explanation
Indices: 572573--572671 Score: 182
Period size: 28 Copynumber: 3.5 Consensus size: 28
572563 GCATATGGAA
572573 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
572601 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
572629 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
572657 AGTACTAATGGCATT
1 AGTACTAATGGCATT
572672 GAATTGCAAT
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
28 68 0.97
29 2 0.03
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.37
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 572073 -- 572572
TGCTACGCTTCGCTTGTTTCTATATGATAATATGCACCTTGGTCTCTGTGCTCCCTGCGGGCAAT
GGTTTAGCAAGAGAGTGAAGAACGAACGATCCTCCGAGTGATGGAGTCCGACTCAAGCGAGTGAG
TGAAAGGGGCGTGGCAAGAGAGTGAGTTCGACTCGCGAACGATCAGCAAGTGAAAAAGCCCTCGC
AACTTTCAATGAGAATTGCGTTAGGGAACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTG
TGCAATTGAAAGGTAAAGGTCAGCACACATTTGAAGGATGTGCTTATGAAAAGCTTTTGGTTGTT
TCAGGACATCAAGGTTTGATGGAAAATTATGGAAAGGAAAGGATCAATTGTCATTGTATGCCATT
ATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGC
ACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 572672 -- 573171
GAATTGCAATGAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
Found at i:572863 original size:43 final size:42
Alignment explanation
Indices: 572802--573682 Score: 243
Period size: 43 Copynumber: 21.2 Consensus size: 42
572792 TTCCATCAAA
** *
572802 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
572845 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
572883 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
572921 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *** *
572964 AGTACTGA--TGACATACAAATGAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACTTG--A-A-AGA-CAGTCTTGACCTTTTTGGTAAG-GTC
** * *** *
573009 AGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
** *
573052 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
573095 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
573133 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
573171 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * ** * * * *
573214 AGTACTGA--TGACATACA--AATGAGTCTTGTATGGTCAGGTG
1 AGTCCTGACTTGAAAGACAGTCTTGA-CCTT-TTTGGTAAGGTC
* * ** * * * ***
573254 AGTACT-A-ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA--TC
1 AGTCCTGACTTGAAAGAC-AGT-C--TT-GACCT-T--TTTGGTAAGGTC
** * *
573300 AGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
**
573338 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
573381 AGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
** * * *****
573419 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* ** *** * **
573462 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *** *
573503 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
** *
573546 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
573589 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
573632 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
573675 AGTACTGA
1 AGTCCTGA
573683 TGACATACAA
Statistics
Matches: 645, Mismatches: 121, Indels: 144
0.71 0.13 0.16
Matches are distributed among these distances:
33 23 0.04
35 4 0.01
37 9 0.01
38 102 0.16
39 10 0.02
40 31 0.05
41 38 0.06
42 8 0.01
43 351 0.54
44 22 0.03
45 24 0.04
46 9 0.01
47 4 0.01
48 6 0.01
49 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 572302 -- 572801
GAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAATTGAAAGGTAAAGGTCAGCACACATTTGA
AGGATGTGCTTATGAAAAGCTTTTGGTTGTTTCAGGACATCAAGGTTTGATGGAAAATTATGGAA
AGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCA
ACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGAC
CTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 573683 -- 574182
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCA
TTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
Found at i:572947 original size:76 final size:77
Alignment explanation
Indices: 572821--573200 Score: 356
Period size: 76 Copynumber: 4.7 Consensus size: 77
572811 CTTTCAAGAC
*
572821 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC-AGAAGAATCAG
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTAGAAGAATCAG
572885 TCCTGATCAGAT
66 TCCTGATCAGAT
* *
572897 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA-AG
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC---TAGA-AGA-
* * * *
572961 GTGAGTACTGATGACATACAAAT
61 ATCAGT-C--CTG--AT-CAGAT
* *** * * *
572984 GAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTT-CAAGACAGTATTGACCTTTCAAGAA
1 -AGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGA-CTTTGAAAGACAGTCTTGACC--T--AGAA
*
573047 GAATCAGTCCTGACCTTTCAAGAC
59 GAATCAGTCCTGA----TC-AGAT
* *
573071 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC-AGAAGAATCAG
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTAGAAGAATCAG
573135 TCCTGATCAGAT
66 TCCTGATCAGAT
*
573147 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
573201 TTTTGATAAG
Statistics
Matches: 244, Mismatches: 34, Indels: 51
0.74 0.10 0.16
Matches are distributed among these distances:
76 104 0.43
77 2 0.01
80 3 0.01
81 22 0.09
82 1 0.00
83 1 0.00
84 2 0.01
85 5 0.02
86 39 0.16
87 17 0.07
88 41 0.17
89 7 0.03
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (77 bp):
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTAGAAGAATCAG
TCCTGATCAGAT
Left flanking sequence: Indices 572321 -- 572820
GCGAGTGCTTTGTGCAATTGAAAGGTAAAGGTCAGCACACATTTGAAGGATGTGCTTATGAAAAG
CTTTTGGTTGTTTCAGGACATCAAGGTTTGATGGAAAATTATGGAAAGGAAAGGATCAATTGTCA
TTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTT
GGTATGGTCAGCACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAA
TGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCCAGAAGAATGAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
Right flanking sequence: Indices 573201 -- 573700
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGT
CAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
Found at i:573017 original size:24 final size:24
Alignment explanation
Indices: 572985--573069 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 24
572975 CATACAAATG
*
572985 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
573009 AGTCCTGACCTTTCAAGACAG--T-
1 AGTCCTGACCTTTCAAGA-AGAATC
573031 A-T--TGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
573052 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
573070 CAGTCTTGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
18 2 0.04
19 13 0.25
20 1 0.02
21 2 0.04
22 2 0.04
23 1 0.02
24 30 0.57
25 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 572485 -- 572984
CATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACA
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCA
ATGAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 573070 -- 573569
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGG
TCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:573083 original size:19 final size:19
Alignment explanation
Indices: 573008--573074 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 19
572998 CAAGAAGAAT
573008 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
**
573027 CAGTATTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
573050 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
573070 CAGTC
1 CAGTC
573075 TTGATCTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 18 0.46
20 1 0.03
21 3 0.08
22 3 0.08
23 1 0.03
24 13 0.33
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 572508 -- 573007
TGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCCAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAAGAAT
Right flanking sequence: Indices 573075 -- 573574
TTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:573327 original size:19 final size:19
Alignment explanation
Indices: 573299--573577 Score: 120
Period size: 19 Copynumber: 13.7 Consensus size: 19
573289 CTTCCATAAT
*
573299 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
**
573318 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
*
573336 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
573356 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACC--TTT--CAA-GA
* ** *
573380 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
**
573399 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
573417 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
573437 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
573456 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
573478 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
573501 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
573521 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCTTGACCTTT-C--AAG-A
*
573544 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
573564 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
573578 TTGGTAAGGT
Statistics
Matches: 198, Mismatches: 32, Indels: 60
0.68 0.11 0.21
Matches are distributed among these distances:
17 8 0.04
18 2 0.01
19 100 0.51
20 10 0.05
21 15 0.08
22 14 0.07
23 5 0.03
24 44 0.22
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 572799 -- 573298
AAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 573578 -- 574077
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAAT
GACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTT
TCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:573511 original size:24 final size:23
Alignment explanation
Indices: 573478--573563 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 23
573468 GATTTCAAGA
*
573478 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
573502 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
* *
573521 CAGTCTTGACCTTTCCAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
573545 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
573564 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 16 0.31
20 1 0.02
23 1 0.02
24 34 0.65
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 572978 -- 573477
ACAAATGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 573564 -- 574063
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGA
AAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
Found at i:573616 original size:19 final size:19
Alignment explanation
Indices: 573589--573659 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
573579 TGGTAAGGTT
573589 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
573608 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
573632 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
573651 AGTCTTGAC
1 AGTCCTGAC
573660 CTTTTTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
19 17 0.40
20 3 0.07
21 5 0.12
22 5 0.12
23 3 0.07
24 9 0.21
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 573089 -- 573588
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 573660 -- 574159
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACC
TGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACT
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
Found at i:573877 original size:19 final size:19
Alignment explanation
Indices: 573810--573881 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
573800 CATTCTCATT
573810 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
573826 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
573850 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
573869 AGTCTTGACCTTT
1 AGTCCTGACCTTT
573882 TTGGTAAGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 13 0.29
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.27
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 573310 -- 573809
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
TCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGG
CATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 573882 -- 574381
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
Found at i:573895 original size:43 final size:43
Alignment explanation
Indices: 573810--573934 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
573800 CATTCTCATT
*** *
573810 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
573850 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
573893 AGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
573935 GAGTACTAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 51 0.71
44 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 573310 -- 573809
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
TCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGG
CATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 573935 -- 574434
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTA
Found at i:574014 original size:24 final size:24
Alignment explanation
Indices: 573978--574066 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
573968 GTCCTTCCAT
573978 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
574002 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
574023 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
574045 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
574067 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 573478 -- 573977
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGG
TGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 574067 -- 574566
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTA
TTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGAC
Found at i:574033 original size:19 final size:19
Alignment explanation
Indices: 574006--574080 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
573996 AAGAAGAATG
574006 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
574025 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
574049 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
574068 AGTCTTGACCTTT
1 AGTCCTGACCTTT
574081 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 573506 -- 574005
CCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGC
ATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 574081 -- 574580
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAAT
Found at i:574034 original size:43 final size:43
Alignment explanation
Indices: 573981--574207 Score: 257
Period size: 43 Copynumber: 5.3 Consensus size: 43
573971 CTTCCATAAT
* *
573981 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
574024 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*** * * *
574067 CAGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAAGA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTT-CAAGA
** * * *
574110 CAGTCTTGACCTTTTTGATAAG-GTCAGTACTGA--TTTCAAGA
1 CAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
* *
574151 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
574194 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
574208 TTGGTAAGGT
Statistics
Matches: 157, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
40 6 0.04
41 24 0.15
42 7 0.04
43 113 0.72
44 7 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 573481 -- 573980
TCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGA
GTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 574208 -- 574707
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
Found at i:574167 original size:19 final size:19
Alignment explanation
Indices: 574143--574207 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
574133 TCAGTACTGA
574143 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
574162 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
*
574186 TGTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
574205 TTT
1 TTT
574208 TTGGTAAGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
19 19 0.51
20 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 573643 -- 574142
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAAT
GACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTT
TCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 574208 -- 574707
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
Found at i:574221 original size:43 final size:42
Alignment explanation
Indices: 574006--574269 Score: 271
Period size: 43 Copynumber: 6.2 Consensus size: 42
573996 AAGAAGAATG
*** *
574006 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
574049 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
574092 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
574135 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
574176 AGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
574219 AGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
574262 AGTACTGA
1 AGTCCTGA
574270 TGACATACAA
Statistics
Matches: 184, Mismatches: 32, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
41 29 0.16
42 9 0.05
43 143 0.78
44 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 573506 -- 574005
CCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAAGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGC
ATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 574270 -- 574769
TGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
TATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACAT
Found at i:574242 original size:127 final size:127
Alignment explanation
Indices: 574016--574270 Score: 456
Period size: 127 Copynumber: 2.0 Consensus size: 127
574006 AGTCCTGACC
* *
574016 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTT
* *
574081 TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
66 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
574143 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTT
* *
574208 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
66 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
574270 T
1 T
574271 GACATACAAA
Statistics
Matches: 122, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 122 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (127 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 573516 -- 574015
CAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
AGACAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGAC
AATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 574271 -- 574770
GACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCT
ATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATA
Found at i:574310 original size:19 final size:19
Alignment explanation
Indices: 574283--574400 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
574273 CATACAAATG
* *
574283 AGTCTTGACCTTTCCAGAC
1 AGTCCTGACCTTTCAAGAC
*
574302 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
574326 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
574345 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
574369 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
**
574388 AGTATTGACCTTT
1 AGTCCTGACCTTT
574401 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 20
0.74 0.07 0.18
Matches are distributed among these distances:
19 38 0.47
20 2 0.02
21 6 0.07
22 5 0.06
23 2 0.02
24 28 0.35
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 573783 -- 574282
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 574401 -- 574900
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCT
ATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
Found at i:574334 original size:24 final size:24
Alignment explanation
Indices: 574301--574386 Score: 119
Period size: 24 Copynumber: 3.8 Consensus size: 24
574291 CCTTTCCAGA
574301 CAGTCCTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAAGAAT
*
574325 GAGTCCTGACCTTTC---AAG-A-
1 CAGTCCTGACCTTTCAAGAAGAAT
*
574344 CAGTCTTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAAGAAT
574368 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
574387 CAGTATTGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
CAGTCCTGACCTTTCAAGAAGAAT
Left flanking sequence: Indices 573801 -- 574300
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATA
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGA
Right flanking sequence: Indices 574387 -- 574886
CAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
AGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
Found at i:574335 original size:43 final size:43
Alignment explanation
Indices: 574279--574616 Score: 285
Period size: 43 Copynumber: 7.9 Consensus size: 43
574269 ATGACATACA
* * *
574279 AATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
574322 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * ***
574365 AATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * * * ** *
574409 -GTTAGTCCTGA-CTTTGAAATACAGTATTGACCTTTTTGATAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* * * *
574452 -GTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
574492 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * * *
574536 -GTCAGTCCTGA-CTTTGAAATACAGTATTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCAAGAAG
* * * *
574578 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA
574617 AAAAGGTGAG
Statistics
Matches: 242, Mismatches: 43, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
40 6 0.02
41 22 0.09
42 14 0.06
43 187 0.77
44 13 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 573779 -- 574278
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
TACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 574617 -- 575116
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTT
GGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
Found at i:574388 original size:86 final size:84
Alignment explanation
Indices: 574283--574616 Score: 323
Period size: 86 Copynumber: 3.9 Consensus size: 84
574273 CATACAAATG
* * ** *
574283 AGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGA-CTTTCAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
*
574348 CTTGACCTTTCAAGAAGAATC
65 CTTGACCTTTCAAGAAG-GTC
*** * * * *
574369 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAATACA
1 AGTCCTGA-CTTTCAAGACAGTATTGACCTTTCAAG-AAGAATCAGTCCTGACCTTT-CAAGACA
* ** *
574432 GTATTGACCTTTTTGATAAGGTC
63 GTCTTGACC-TTTCAAGAAGGTC
* * *
574455 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
1 AGTCCTGACTTTCAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
***
574519 TTGACCTTTTTGGTAAGGTC
66 TTGACCTTTCAAG-AAGGTC
* * * *
574539 AGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGT
1 AGTCCTGACTTT-CAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
*
574604 CTTGATCTTTCAA
65 CTTGACCTTTCAA
574617 AAAAGGTGAG
Statistics
Matches: 199, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
83 6 0.03
84 57 0.29
85 11 0.06
86 115 0.58
87 10 0.05
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (84 bp):
AGTCCTGACTTTCAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCAAGAAGGTC
Left flanking sequence: Indices 573783 -- 574282
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 574617 -- 575116
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTT
GGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
Found at i:574417 original size:320 final size:323
Alignment explanation
Indices: 573826--574570 Score: 1300
Period size: 320 Copynumber: 2.3 Consensus size: 323
573816 GACCTTTCAG
* *
573826 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* *
573891 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
66 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAAT
*
573956 GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
131 G-AA-T-GTCCTGACCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
*
574021 AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
193 AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGT
*
574086 AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
258 AAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
574151 C
323 C
*
574152 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
574217 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
66 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAAT
* *
574282 G-A-GTCTTGACCTTTCCA-GA-CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
131 GAATGTCCTGACC-TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
574343 ACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAA
195 ACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAA
*
574408 GGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
260 GGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
574472 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* *
574537 TCAGTCCTGACTTTGAAATACAGTATTGACCTTT
66 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTT
574571 CAAGAAGAAT
Statistics
Matches: 403, Mismatches: 15, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
320 264 0.66
321 8 0.02
322 5 0.01
324 1 0.00
326 125 0.31
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (323 bp):
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAAT
GAATGTCCTGACCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
Left flanking sequence: Indices 573326 -- 573825
ACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAA
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACA
GTCCTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGA
GTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 574571 -- 575070
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
Found at i:574487 original size:19 final size:19
Alignment explanation
Indices: 574463--574527 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
574453 TCAGTACTGA
574463 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
574482 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
574506 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
574525 TTT
1 TTT
574528 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 573963 -- 574462
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 574528 -- 575027
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCT
TTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
Found at i:574584 original size:127 final size:128
Alignment explanation
Indices: 574307--574620 Score: 481
Period size: 127 Copynumber: 2.5 Consensus size: 128
574297 CAGACAGTCC
* *
574307 TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
1 TGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGT
*
574372 CCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTAT
65 CCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
** * * *
574436 TGACCTTTTTGATAAG-GTCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGT
1 TGACC-TTTCAAGAAGAATCAGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGT
*
574499 CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
65 CCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
* *
574563 TGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AAAA
1 TGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAAA
574621 GGTGAGTACT
Statistics
Matches: 165, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
126 7 0.04
127 111 0.67
128 4 0.02
129 36 0.22
130 7 0.04
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (128 bp):
TGACCTTTCAAGAAGAATCAGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTC
CTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
Left flanking sequence: Indices 573807 -- 574306
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTGTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCC
Right flanking sequence: Indices 574621 -- 575120
GGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTA
TGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACC
Found at i:574631 original size:170 final size:169
Alignment explanation
Indices: 574293--574633 Score: 393
Period size: 170 Copynumber: 2.0 Consensus size: 169
574283 AGTCTTGACC
* * *
574293 TTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* *** * *
574358 CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTT
66 CAAGAAGAATCAGTCCTGACCTTTAAAGACAGTATTGACCTTTCAAGTAAGATCAGTCCTGACTT
* *** *
574423 TGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
131 TCAAATA-AGTATTGACCTTTCAAAAAAGGTCAGTACTGA
*
574463 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*** * *
574528 TTGGTAAG-GTCAGTCCTGA-CTTTGAAATACAGTATTGACCTTTCAAG-AAGAATCAGTCCTGA
66 CAAG-AAGAATCAGTCCTGACCTTT-AAAGACAGTATTGACCTTTCAAGTAAG-ATCAGTCCTGA
* * *
574590 TCTTTCAAGAT-AGTCTTGATCTTTCAAAAAAGGTGAGTACTGA
128 -CTTTCAA-ATAAGTATTGACCTTTCAAAAAAGGTCAGTACTGA
574633 T
1 T
574634 GACATACAAA
Statistics
Matches: 143, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
169 7 0.05
170 125 0.87
171 9 0.06
172 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (169 bp):
TTTCAAGACAGTCCTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGACCTTTAAAGACAGTATTGACCTTTCAAGTAAGATCAGTCCTGACTT
TCAAATAAGTATTGACCTTTCAAAAAAGGTCAGTACTGA
Left flanking sequence: Indices 573793 -- 574292
CCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTGTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
Right flanking sequence: Indices 574634 -- 575133
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTC
Found at i:574735 original size:21 final size:21
Alignment explanation
Indices: 574692--574744 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
574682 ATTGCAATTG
*
574692 GTCCTGTCC-TTCCATAATCA
1 GTCCTGACCTTTCCATAATCA
* *
574712 GTCCTGACCTTTCTATAATGA
1 GTCCTGACCTTTCCATAATCA
* *
574733 GTCTTCACCTTT
1 GTCCTGACCTTT
574745 TTGGTATGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.19, C:0.30, G:0.11, T:0.40
Consensus pattern (21 bp):
GTCCTGACCTTTCCATAATCA
Left flanking sequence: Indices 574192 -- 574691
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
Right flanking sequence: Indices 574745 -- 575244
TTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
Found at i:574834 original size:16 final size:16
Alignment explanation
Indices: 574810--574840 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
574800 CATTCTCATT
574810 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
574826 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
574841 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 574310 -- 574809
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGAC
CTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTT
TCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 574841 -- 575340
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
Found at i:574895 original size:43 final size:43
Alignment explanation
Indices: 574810--574934 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
574800 CATTCTCATT
*** *
574810 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
574850 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
574893 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGT
574935 GAGTACTAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 4 0.05
43 51 0.69
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 574310 -- 574809
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGAC
CTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTT
TCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 574935 -- 575434
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
Found at i:575014 original size:24 final size:24
Alignment explanation
Indices: 574978--575066 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
574968 GTCCTTCCAT
574978 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
575002 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
575023 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
575045 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
575067 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 574478 -- 574977
GACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTG
ATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTT
CACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 575067 -- 575566
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTG
Found at i:575033 original size:19 final size:19
Alignment explanation
Indices: 575006--575080 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
574996 AAGAAGAATG
575006 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
575025 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
575049 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
575068 AGTCTTGACCTTT
1 AGTCCTGACCTTT
575081 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 574506 -- 575005
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTT
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 575081 -- 575580
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:575034 original size:43 final size:43
Alignment explanation
Indices: 574981--575120 Score: 183
Period size: 43 Copynumber: 3.3 Consensus size: 43
574971 CTTCCATAAT
* *
574981 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
575024 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*** * ** *
575067 CAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGA
575110 CAGTCTTGACC
1 CAGTCTTGACC
575121 AGAAGAATCA
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 84 0.97
44 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 574481 -- 574980
CTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATC
TTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCAC
CTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 575121 -- 575620
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCC
TCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
Found at i:575172 original size:76 final size:78
Alignment explanation
Indices: 575006--575196 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
574996 AAGAAGAATG
**
575006 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
575071 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
575092 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
575155 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
575168 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
575197 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 574506 -- 575005
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTT
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 575197 -- 575696
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
Found at i:575192 original size:43 final size:41
Alignment explanation
Indices: 575144--575240 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
575134 CTGATCAGAT
* * * *
575144 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
575187 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
575228 AGTCTTGACCTTT
1 AGTCTTGACCTTT
575241 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 574644 -- 575143
TGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
TCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 575241 -- 575740
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
Found at i:575365 original size:43 final size:42
Alignment explanation
Indices: 575304--575473 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
575294 TTCCATCAAA
**
575304 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
575347 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
575385 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
575423 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
575466 AGTACTGA
1 AGTCCTGA
575474 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 574804 -- 575303
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 575474 -- 575973
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC
Found at i:575449 original size:76 final size:77
Alignment explanation
Indices: 575323--575708 Score: 264
Period size: 76 Copynumber: 4.7 Consensus size: 77
575313 CTTTCAAGAC
*
575323 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC-AGAAGAATCAG
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTAGAAGAATCAG
575387 TCCTGATCAGAT
66 TCCTGATCAGAT
* * *
575399 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA-AG
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC---TAGA-AGA-
* * * *
575463 GTGAGTACTGATGACATACAAAT
61 ATCAGT-C--CTG--AT-CAGAT
*** * * * *
575486 GAGTCTTGACCTTTCAAG-ACA-GTCCTCACCTTCCTGACTTTTCCATAATG--AGTCCTGACCT
1 -AGTCTTGACCTTTTTGGTA-AGGT--T-A--GTCCTGAC-TGT-GA-AA-GACAGTCTTGACC-
*
575547 TTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
54 -T--AGAAGAATCAGTCCTGA----TC-AGAT
* * *
575579 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC-AGAAGAATCAG
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTAGAAGAATCAG
575643 TCCTGATCAGAT
66 TCCTGATCAGAT
*
575655 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
575709 TTTTGATAAG
Statistics
Matches: 238, Mismatches: 36, Indels: 71
0.69 0.10 0.21
Matches are distributed among these distances:
76 102 0.43
77 2 0.01
80 3 0.01
81 22 0.09
82 1 0.00
84 2 0.01
85 2 0.01
86 11 0.05
87 9 0.04
88 21 0.09
89 2 0.01
90 2 0.01
91 2 0.01
92 23 0.10
93 13 0.05
94 15 0.06
95 5 0.02
96 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (77 bp):
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTAGAAGAATCAG
TCCTGATCAGAT
Left flanking sequence: Indices 574823 -- 575322
CAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
Right flanking sequence: Indices 575709 -- 576208
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
Found at i:575624 original size:43 final size:43
Alignment explanation
Indices: 575577--575729 Score: 121
Period size: 43 Copynumber: 3.8 Consensus size: 43
575567 ACCTTTCAAG
575577 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * * *
575620 ACAGTATTGACC-----AG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* * *
575655 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * *
575696 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
575730 TGACATACAA
Statistics
Matches: 81, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
33 8 0.10
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
43 39 0.48
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 575077 -- 575576
CTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 575730 -- 576229
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
Found at i:575800 original size:16 final size:16
Alignment explanation
Indices: 575776--575806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
575766 CATTCTCATT
575776 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
575792 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
575807 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 575276 -- 575775
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 575807 -- 576306
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
Found at i:575803 original size:256 final size:253
Alignment explanation
Indices: 575007--576005 Score: 1104
Period size: 256 Copynumber: 3.9 Consensus size: 253
574997 AGAAGAATGA
*
575007 GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
1 GTCCTGACCTTTCAAG--AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
*
575072 TTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
64 TTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
575137 ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
129 ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
* * * * *
575202 GATAAGGTCAGTACTGAT----TTCAAGA-CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
194 GATAAGGTGAGTACTGATGACATACAA-ATGAGTCTTGA---TT-CA---TT--TCA-ATCAGTA
575262 CT-AAT
248 CTCAAT
* * * * * * **
575267 GGCAT-ACAATTGCAATTG-GTCCTGTCC-TTCCATCA-AA--AGTCCTGACCTTTCAAGACAGT
1 GTCCTGAC-CTTTCAA--GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
575326 CTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
63 CTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAGTCTTGACCAGAAGAATCAGTCC
575390 TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
127 TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
* * * *
575455 TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA--CCTTTCAAGACAGTCCTCACCT
192 TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATTCATTTCAA-TCAGTACTCA-AT
*
575517 -TCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
1 GTCCTGACCTTT-C--AA-GAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
* *
575581 TCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTATTGACCAGAAGAATCAGTC
62 TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAGTCTTGACCAGAAGAATCAGTC
*
575645 CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTT
126 CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
*
575710 TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCA-TTCTCA
191 TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAT--TCATT--TCAATCAGTACTCA
*
575774 TT
252 AT
*
575776 AGTCCTGACCTTTC-AGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
1 -GTCCTGACCTTTCAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
*** * ** * * *
575840 TGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTTA
65 TGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAATCA
* * * * *
575903 GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTC
123 GTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
* *
575968 TTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAA
183 TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
576006 TTGCAATTGG
Statistics
Matches: 642, Mismatches: 55, Indels: 78
0.83 0.07 0.10
Matches are distributed among these distances:
248 8 0.01
249 5 0.01
250 6 0.01
251 2 0.00
252 10 0.02
253 6 0.01
254 4 0.01
255 169 0.26
256 269 0.42
257 5 0.01
258 6 0.01
259 22 0.03
260 17 0.03
261 22 0.03
262 8 0.01
264 1 0.00
266 82 0.13
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (253 bp):
GTCCTGACCTTTCAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGATTCATTTCAATCAGTACTCAAT
Left flanking sequence: Indices 574507 -- 575006
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTC
AAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCTATAATGAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTT
GACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGA
Right flanking sequence: Indices 576006 -- 576505
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGT
CCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCC
TGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCT
Found at i:575824 original size:24 final size:24
Alignment explanation
Indices: 575792--575876 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
575782 GACCTTTCAG
*
575792 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
575816 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
575835 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
575859 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
575877 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.58
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 575292 -- 575791
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 575877 -- 576376
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
Found at i:575843 original size:19 final size:19
Alignment explanation
Indices: 575776--575890 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
575766 CATTCTCATT
575776 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
575792 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
575816 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
575835 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
575859 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
575878 AGTCTTGACCTTT
1 AGTCCTGACCTTT
575891 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 13 0.16
19 27 0.33
20 4 0.05
21 6 0.07
22 3 0.04
23 1 0.01
24 27 0.33
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 575276 -- 575775
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 575891 -- 576390
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
Found at i:575849 original size:43 final size:42
Alignment explanation
Indices: 575776--575976 Score: 205
Period size: 43 Copynumber: 4.8 Consensus size: 42
575766 CATTCTCATT
575776 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG-ATC
575816 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG-ATC
*** * *
575859 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGATC
** ** * *
575902 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACC-TTTCAAGAAGATC
*
575945 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
575977 TTGATAAGGT
Statistics
Matches: 142, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
40 14 0.10
41 2 0.01
42 6 0.04
43 113 0.80
44 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (42 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGATC
Left flanking sequence: Indices 575276 -- 575775
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 575977 -- 576476
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:575929 original size:19 final size:19
Alignment explanation
Indices: 575902--575972 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
575892 TGGTAAGGTT
*
575902 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
575921 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
575945 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
575964 AGTCTTGAC
1 AGTCCTGAC
575973 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 575402 -- 575901
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 575973 -- 576472
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:575977 original size:43 final size:43
Alignment explanation
Indices: 575814--575986 Score: 217
Period size: 43 Copynumber: 4.0 Consensus size: 43
575804 TCAAGAAGAA
* ** * *
575814 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAG-G
* *
575857 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
* *
575900 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTAAAGACAGTCTTGACCTTTTTGATAAGG
575943 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
575986 T
1 T
575987 GAGTACTAAT
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 3 0.03
43 107 0.92
44 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 575314 -- 575813
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGT
CCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 575987 -- 576486
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:576217 original size:43 final size:43
Alignment explanation
Indices: 576170--576322 Score: 121
Period size: 43 Copynumber: 3.8 Consensus size: 43
576160 ACCTTTCAAG
576170 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
** * * *
576213 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* *
576248 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
576289 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
576323 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 575670 -- 576169
GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 576323 -- 576822
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTT
TCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACAT
Found at i:576428 original size:19 final size:19
Alignment explanation
Indices: 576400--576673 Score: 105
Period size: 19 Copynumber: 13.7 Consensus size: 19
576390 CTTCCATAAT
*
576400 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
**
576419 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
*
576437 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
576457 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACC--TTT--CAA-GA
* ** *
576481 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
**
576500 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
576518 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
576538 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
576557 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
576579 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
576602 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
**
576622 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
*
576640 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
576660 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
576674 TTGGTAAGGT
Statistics
Matches: 190, Mismatches: 36, Indels: 58
0.67 0.13 0.20
Matches are distributed among these distances:
17 11 0.06
18 3 0.02
19 107 0.56
20 9 0.05
21 15 0.08
22 11 0.06
23 3 0.02
24 31 0.16
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 575900 -- 576399
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 576674 -- 577173
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAA
TGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCAT
ATCACAAATTGAATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAATTG
AGTGCTTTGTGCAATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAAGT
TGCGAGTGCTTTGTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTGCT
CATGACGTGACATGACGTTAGGTACGAATGCAATAGCGAAAAATG
Found at i:576448 original size:38 final size:38
Alignment explanation
Indices: 576397--576670 Score: 277
Period size: 38 Copynumber: 6.9 Consensus size: 38
576387 GTCCTTCCAT
576397 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
576435 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
576479 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
* * *
576516 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCA-AAA
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGA-C---CAGAAG
* *
576557 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TCAGTCCTGACCTTTCAAGACAGTCTTGA-C---C-AGAAG
576600 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
576638 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC
576671 TTTTTGGTAA
Statistics
Matches: 201, Mismatches: 18, Indels: 34
0.79 0.07 0.13
Matches are distributed among these distances:
37 3 0.01
38 95 0.47
39 2 0.01
41 34 0.17
42 4 0.02
43 60 0.30
44 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 575897 -- 576396
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 576671 -- 577170
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAG
AAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGAC
CATATCACAAATTGAATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAA
TTGAGTGCTTTGTGCAATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGA
AGTTGCGAGTGCTTTGTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTT
GCTCATGACGTGACATGACGTTAGGTACGAATGCAATAGCGAAAA
Found at i:576503 original size:43 final size:43
Alignment explanation
Indices: 576399--576736 Score: 261
Period size: 43 Copynumber: 8.3 Consensus size: 43
576389 CCTTCCATAA
*
576399 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAG-G
*
576437 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAGG
** * *
576480 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAG-G
* * * ** **
576518 TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAGG
* ** * **
576561 TCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAGG
*
576602 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAG-G
*
576640 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAGG
* **
576683 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTT-GATAAGG
1 TCAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTAG-TAAGG
576726 TCAGTCCTGAC
1 TCAGTCCTGAC
576737 TGTGAAATAC
Statistics
Matches: 246, Mismatches: 29, Indels: 44
0.77 0.09 0.14
Matches are distributed among these distances:
37 5 0.02
38 91 0.37
41 35 0.14
42 3 0.01
43 103 0.42
44 9 0.04
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTAGTAAGG
Left flanking sequence: Indices 575899 -- 576398
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 576737 -- 577236
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGA
AATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACC
ATATCACAAATTGAATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAAT
TGAGTGCTTTGTGCAATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAA
GTTGCGAGTGCTTTGTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTG
CTCATGACGTGACATGACGTTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAA
GCAGCGAGTCGTTGACCAAGCTTTGGAGCGGTATTCAGCGCCCCC
Found at i:576506 original size:81 final size:81
Alignment explanation
Indices: 576399--576797 Score: 359
Period size: 81 Copynumber: 4.9 Consensus size: 81
576389 CCTTCCATAA
576399 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
**
576464 GACCTTTTTGGTAAGG
66 GACCTTTTTAATAAGG
** * * *
576480 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTT
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
* ** *
576545 GATCTTTCAAAAAAGG
66 GACCTTTTTAATAAGG
* *
576561 TCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGACCTTTCAAGACA
** *
576624 GTCTTGACC---AGAAGAA--
61 GTCTTGACCTTTTTAATAAGG
* * * **
576640 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTGTGAAAGA
1 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGACCT-TTCAAGA
*
576703 CAGTCTTGACCTTTTTGATAAGG
59 CAGTCTTGACCTTTTTAATAAGG
** * * *
576726 TCAGTCCTGA-CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
1 TCAGTCCTGACCT-TTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
*
576790 TGATCTTT
65 TGACCTTT
576798 CAAAAAAGGT
Statistics
Matches: 253, Mismatches: 44, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
77 1 0.00
79 23 0.09
80 7 0.03
81 153 0.60
82 4 0.02
83 1 0.00
84 37 0.15
85 2 0.01
86 25 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (81 bp):
TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTAATAAGG
Left flanking sequence: Indices 575899 -- 576398
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 576798 -- 577297
CAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTC
AAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCT
GACCATATCACAAATTGAATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTG
AAATTGAGTGCTTTGTGCAATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATT
TGAAGTTGCGAGTGCTTTGTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGC
TTTGCTCATGACGTGACATGACGTTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCAC
GAAAGCAGCGAGTCGTTGACCAAGCTTTGGAGCGGTATTCAGCGCCCCCTACATAGATCCGTTGA
TCCCGTCCCGGCACAGATCTTTTCTTTCTCAATGAAAGAAAAGGA
Found at i:576712 original size:19 final size:19
Alignment explanation
Indices: 576685--576755 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
576675 TGGTAAGGTT
576685 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
576704 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
576728 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
576747 AGTCTTGAC
1 AGTCCTGAC
576756 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 576185 -- 576684
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 576756 -- 577255
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCC
ATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGAATTGT
ATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAATTGAGTGCTTTGTGCAATTA
ACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAAGTTGCGAGTGCTTTGTGGG
CTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATGACGTGACATGACG
TTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAAGCAGCGAGTCGTTGACCAA
GCTTTGGAGCGGTATTCAGCGCCCCCTACATAGATCCGTTGATCC
Found at i:576736 original size:24 final size:24
Alignment explanation
Indices: 576660--576736 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
576650 CCTTTCAAGA
* *
576660 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
576684 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
576703 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
576727 CAGTCCTGAC
1 CAGTCCTGAC
576737 TGTGAAATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 576160 -- 576659
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
TTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 576737 -- 577236
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGA
AATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACC
ATATCACAAATTGAATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAAT
TGAGTGCTTTGTGCAATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAA
GTTGCGAGTGCTTTGTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTG
CTCATGACGTGACATGACGTTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAA
GCAGCGAGTCGTTGACCAAGCTTTGGAGCGGTATTCAGCGCCCCC
Found at i:576737 original size:43 final size:43
Alignment explanation
Indices: 576656--576756 Score: 175
Period size: 43 Copynumber: 2.3 Consensus size: 43
576646 CTGACCTTTC
* *
576656 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
576699 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
576742 AATACAGTCTTGACC
1 AAGACAGTCTTGACC
576757 AGAAGAATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 576156 -- 576655
CCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTG
ATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 576757 -- 577256
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCA
TAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGAATTGTA
TGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAATTGAGTGCTTTGTGCAATTAA
CAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAAGTTGCGAGTGCTTTGTGGGC
TTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATGACGTGACATGACGT
TAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAAGCAGCGAGTCGTTGACCAAG
CTTTGGAGCGGTATTCAGCGCCCCCTACATAGATCCGTTGATCCC
Found at i:576880 original size:124 final size:120
Alignment explanation
Indices: 576480--576880 Score: 337
Period size: 124 Copynumber: 3.3 Consensus size: 120
576470 TTTGGTAAGG
576480 TCAGTCCTGACC-TT---GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
1 TCAGTCCTGACCTTTCAAGAAAT-CAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
*
576541 TCTTGATCTTTCAAAAAAGGTCAGTACTGAT--TTCAAGACAGTCTTGACCTTTCAAGAAAAA
65 TCTTGATCTTTCAAAAAAGGTCAGTACTGATGATACAA-ACAGTCTTGACCTTTC------AA
* *
576602 TCAGTCCTGACCTTTCAAG--A-CAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 TCAGTCCTGACCTTTCAAGAAATCAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGT
* ***** * * *
576664 CTTGACCTTTTTGGTAAGGTTAGTCCTGACTG-TGA-AAGACAGTCTTGACCTTTTTGATAA
66 CTTGATCTTTCAAAAAAGGTCAGTACTGA-TGAT-ACAA-ACAGTCTTGACC--TTT--CAA
*
576724 GGTCAGTCCTGA-CTGT---GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGAT
1 --TCAGTCCTGACCTTTCAAGAAAT-CAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGAT
* *
576785 AGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAA
63 AGTCTTGATCTTTCAAAAAAGGTCAGTACTGATG--ATACAAA-CAGTCTTGACCTTTCAA
* * *
576846 TCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACC
1 TC-AGTCCTGACCTTTCAAGAAATCAGTCTTGACC
576881 TTTCCATAAG
Statistics
Matches: 223, Mismatches: 29, Indels: 52
0.73 0.10 0.17
Matches are distributed among these distances:
120 3 0.01
121 7 0.03
122 81 0.36
123 8 0.04
124 100 0.45
125 7 0.03
126 17 0.08
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (120 bp):
TCAGTCCTGACCTTTCAAGAAATCAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGT
CTTGATCTTTCAAAAAAGGTCAGTACTGATGATACAAACAGTCTTGACCTTTCAA
Left flanking sequence: Indices 575980 -- 576479
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Right flanking sequence: Indices 576881 -- 577380
TTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGA
ATTGTATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAATTGAGTGCTTTGTGC
AATTAACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAAGTTGCGAGTGCTTT
GTGGGCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATGACGTGACA
TGACGTTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAAGCAGCGAGTCGTTG
ACCAAGCTTTGGAGCGGTATTCAGCGCCCCCTACATAGATCCGTTGATCCCGTCCCGGCACAGAT
CTTTTCTTTCTCAATGAAAGAAAAGGAGGGGTAGGGACACCAGCAAATGACCAAGTTGATCCAGT
CGATCCATGATCCACCGAGTGGAAATGGGATGGGTCAAGGTAGGA
Found at i:576881 original size:22 final size:21
Alignment explanation
Indices: 576825--576884 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 21
576815 GATGACATAC
*
576825 AAATGAGTCTTGACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
** *
576846 TCA--AGTCCTCACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
576865 GAAATGAGTCCTGACCTTTC
1 -AAATGAGTCCTGACCTTTC
576885 CATAAGGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
19 14 0.48
20 1 0.03
21 1 0.03
22 13 0.45
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (21 bp):
AAATGAGTCCTGACCTTTCAA
Left flanking sequence: Indices 576325 -- 576824
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCT
TGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATAC
Right flanking sequence: Indices 576885 -- 577384
CATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGAATTG
TATGCCGCTGACCCTGACAAAAGAGTGAATCTCATTTTGTCTGAAATTGAGTGCTTTGTGCAATT
AACAAGAGGGCTTTGTTCTGACGTGACGTGACTTTCAGCAATTTGAAGTTGCGAGTGCTTTGTGG
GCTTTGCACGTCTGATAGTCAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATGACGTGACATGAC
GTTAGGTACGAATGCAATAGCGAAAAATGAGGTACGGCCCCACGAAAGCAGCGAGTCGTTGACCA
AGCTTTGGAGCGGTATTCAGCGCCCCCTACATAGATCCGTTGATCCCGTCCCGGCACAGATCTTT
TCTTTCTCAATGAAAGAAAAGGAGGGGTAGGGACACCAGCAAATGACCAAGTTGATCCAGTCGAT
CCATGATCCACCGAGTGGAAATGGGATGGGTCAAGGTAGGAGCGC
Found at i:584494 original size:43 final size:43
Alignment explanation
Indices: 584447--584860 Score: 371
Period size: 43 Copynumber: 9.9 Consensus size: 43
584437 CTCACCTTTT
* * *
584447 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* * * *
584490 TTGAAAGGTCAAGACTGTATTTACAA-GTCAGGACTGA-CCTTA
1 TTGAAAGGTCAAGACTGTCTTGA-AAGGTCAGGACTGATTCTTC
** * ** *
584532 TCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTGAC
1 T-TGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCT-TC
***
584576 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* *
584619 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
*
584662 TTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTC
* * *
584703 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* ** *
584746 -T----GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTAC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C
***
584784 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
584827 -T----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
584861 ATGGAAGGAC
Statistics
Matches: 311, Mismatches: 40, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
37 3 0.01
38 59 0.19
41 34 0.11
42 15 0.05
43 189 0.61
44 11 0.04
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 583947 -- 584446
ATCGGGGGGAAGAAGCACTCGCTTTGAATTGCGTGTCATGTCACGTCATGTCACGAGCAAAGCCC
ACAAAGCACTCGCAACTTTGAACTTCAGACGTGGCAATAGGCGAATTTCAAGCTTGAAAGGCGTC
ATGTCACGAGCAAAGTGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAG
GGGACAACTTTGCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGAT
GAAGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCA
TACAATTGCAATTTTGGTATGGTCAGCACTAATGGCATCTAATTGCAACCTTTCCTTTCCATGAG
TTTGTGAGCTTATGGAAAGGTTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGT
CAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTT
Right flanking sequence: Indices 584861 -- 585360
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
Found at i:584548 original size:24 final size:24
Alignment explanation
Indices: 584516--584592 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
584506 GTATTTACAA
*
584516 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
584540 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
584559 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
584583 GTCAAGACTG
1 GTCAAGACTG
584593 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 584016 -- 584515
AGCACTCGCAACTTTGAACTTCAGACGTGGCAATAGGCGAATTTCAAGCTTGAAAGGCGTCATGT
CACGAGCAAAGTGAACCATAGGGATTTCTTTGCACAAAGCACTCGCAAAGCGAAGCGTGAGGGGA
CAACTTTGCTCGCTGGGGGCAAAGCACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAG
TGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATACA
ATTGCAATTTTGGTATGGTCAGCACTAATGGCATCTAATTGCAACCTTTCCTTTCCATGAGTTTG
TGAGCTTATGGAAAGGTTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGG
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTACAA
Right flanking sequence: Indices 584593 -- 585092
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
Done.