Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 18 of 20
Found at i:545628 original size:28 final size:28
Alignment explanation
Indices: 545605--545724 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
545595 TGACAATTGT
545605 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
545633 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
545661 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
545689 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
545717 ATGCCATT
1 ATGCCATT
545725 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 545105 -- 545604
AGAAAGTATAGCGCCTTTGTCCTCTAACAAACAGAAAGAGGAAAGCCCCAAAAGGAAAGACTGAT
TAACAGACAGAGAGGGAGGAGATTGACTAGAAGCAGAGAGCGCATGTGCATTGGCTAAAGGATCA
AAGCACTCGCAACTTTCAATGGCAAGTCACGAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATG
CTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTTATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 545725 -- 546224
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCAT
TCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAA
AGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATC
Found at i:545807 original size:43 final size:43
Alignment explanation
Indices: 545746--545873 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
545736 ATGAGTACTC
* *
545746 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
545789 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * *
545832 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
545874 GATTCTTCTG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 5 0.06
43 73 0.94
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 545246 -- 545745
ACTTTCAATGGCAAGTCACGAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATGCTGAAAGAAGG
GATCAAGGTTTGACGGATTGATGGAAAGGTTATGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 545874 -- 546373
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTA
Found at i:545830 original size:19 final size:19
Alignment explanation
Indices: 545760--545830 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
545750 TATCAAAAAG
* *
545760 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
545779 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
545802 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
545822 GTCAGGACT
1 GTCAAGACT
545831 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 545260 -- 545759
GTCACGAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGAC
GGATTGATGGAAAGGTTATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 545831 -- 546330
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
Found at i:545866 original size:19 final size:19
Alignment explanation
Indices: 545842--545916 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
545832 ACCTTACCAA
545842 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
545861 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
545885 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
545904 AAAGGTCAGGACT
1 AAAGGTCAAGACT
545917 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 545342 -- 545841
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 545917 -- 546416
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
Found at i:545887 original size:24 final size:23
Alignment explanation
Indices: 545859--545944 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
545849 AAGACTGTCT
545859 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
*
545882 TGGAAAGGTCAAGACTG--TC-T-
1 T-GAAAGGTCAGGACTGATTCTTC
*
545902 TGAAAGGTCAGGACTCATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
545925 TTGAAAGGTCAGGACTGATT
1 -TGAAAGGTCAGGACTGATT
545945 ATGGAAGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (23 bp):
TGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 545359 -- 545858
AATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTT
CTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 545945 -- 546444
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTC
AGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
Found at i:545889 original size:43 final size:42
Alignment explanation
Indices: 545799--545941 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 42
545789 ACCTTATCAA
* ** * *
545799 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTATTCTT-CTAG
*
545842 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTCTTCTAG
*
545885 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTCTTCTAG
*
545928 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
545942 ATTATGGAAG
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 5 0.06
43 80 0.90
44 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTCTTCTAG
Left flanking sequence: Indices 545299 -- 545798
GCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTTATGGAAAGGTCAGGACTAATGA
GAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAA
Right flanking sequence: Indices 545942 -- 546441
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAA
GTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
Found at i:545891 original size:86 final size:86
Alignment explanation
Indices: 545746--545916 Score: 213
Period size: 86 Copynumber: 2.0 Consensus size: 86
545736 ATGAGTACTC
* * *
545746 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
545811 TGTCTTTCAAA-GTCAGGACTA
66 TGTC-TTCAAAGGTCAGGACTA
* * * **
545832 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTTCT-GGAAAGGTCAAG
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAG
*
545895 ACTGTCTTGAAAGGTCAGGACT
64 ACTGTCTTCAAAGGTCAGGACT
545917 CATTCTTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
85 9 0.12
86 60 0.82
87 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (86 bp):
ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTCAAAGGTCAGGACTA
Left flanking sequence: Indices 545246 -- 545745
ACTTTCAATGGCAAGTCACGAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATGCTGAAAGAAGG
GATCAAGGTTTGACGGATTGATGGAAAGGTTATGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 545917 -- 546416
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
Found at i:546068 original size:43 final size:43
Alignment explanation
Indices: 545988--546112 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
545978 ATTAGTACTC
* * * *
545988 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
546031 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
546074 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
546113 AATGAGAATG
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.06
43 48 0.67
44 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 545488 -- 545987
GTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCT
TCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 546113 -- 546612
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
CAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:546103 original size:16 final size:16
Alignment explanation
Indices: 546082--546112 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
546072 TGATTCTTCT
546082 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
546098 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
546113 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 545582 -- 546081
AGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 546113 -- 546612
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
CAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:546413 original size:76 final size:78
Alignment explanation
Indices: 546320--546760 Score: 286
Period size: 76 Copynumber: 5.4 Consensus size: 78
546310 TTATCAAAAA
* * *
546320 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
546383 GACTGATTCTTCT
66 GACTGATTCTTCT
* * *
546396 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
* * ***
546461 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
546478 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACCAAAAA--G--A--TCAAGA
* * *
546542 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
546575 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
546638 GACTGATTCTTCT
66 GACTGATTCTTCT
* * *
546651 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
546716 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
* *
546732 GGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 GGTCAAGACTGTATTTCAAA-GTCAGGACT
546761 CATTCTTCTT
Statistics
Matches: 280, Mismatches: 49, Indels: 67
0.71 0.12 0.17
Matches are distributed among these distances:
76 101 0.36
77 4 0.01
79 4 0.01
80 8 0.03
81 62 0.22
82 7 0.03
83 2 0.01
84 10 0.04
85 1 0.00
86 2 0.01
88 1 0.00
89 18 0.06
90 18 0.06
91 1 0.00
93 8 0.03
94 1 0.00
95 17 0.06
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 545820 -- 546319
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 546761 -- 547260
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGAC
TACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
CCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCA
Found at i:546463 original size:43 final size:42
Alignment explanation
Indices: 546298--546467 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
546288 TTGTATGTCA
* * *
546298 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * * *
546341 TCAGGACTAACCTGACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
546379 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
546417 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
546460 TCAGGACT
1 TCAGGACT
546468 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 4 0.04
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 545798 -- 546297
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAG
ACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGA
CTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 546468 -- 546967
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAA
TTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATA
CCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTC
Found at i:546676 original size:38 final size:38
Alignment explanation
Indices: 546634--546769 Score: 157
Period size: 38 Copynumber: 3.4 Consensus size: 38
546624 GACTATCTGA
* **
546634 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
546672 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
546715 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
*
546753 TCAGGACTCATTCTTCT
1 TCAGGACTGATTCTTCT
546770 TGAAAGGTCA
Statistics
Matches: 83, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
37 3 0.04
38 47 0.57
39 1 0.01
42 1 0.01
43 28 0.34
44 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 546134 -- 546633
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 546770 -- 547269
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCAT
ACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGA
Found at i:546715 original size:19 final size:19
Alignment explanation
Indices: 546691--546760 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
546681 ACCTTACCAA
546691 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
546710 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
546730 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
546748 AAAGGTCAGGACT
1 AAAGGTCAAGACT
546761 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
19 32 0.80
21 4 0.10
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 546191 -- 546690
TTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 546761 -- 547260
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGAC
TACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
CCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCA
Found at i:546723 original size:43 final size:41
Alignment explanation
Indices: 546531--546760 Score: 166
Period size: 43 Copynumber: 5.8 Consensus size: 41
546521 CCAAAAATGG
*
546531 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTA-CAA
* *
546572 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTA-CAA
* * *
546615 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT-C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACAA
* * * *
546650 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGACCTTA-CAA
*
546691 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C--
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACAA
*
546731 --TGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
546761 CATTCTTCTT
Statistics
Matches: 151, Mismatches: 22, Indels: 35
0.73 0.11 0.17
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 4 0.03
38 48 0.32
39 5 0.03
41 17 0.11
42 10 0.07
43 53 0.35
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (41 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACAA
Left flanking sequence: Indices 546031 -- 546530
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAAAAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 546761 -- 547260
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGAC
TACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
CCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCA
Found at i:546772 original size:24 final size:24
Alignment explanation
Indices: 546743--546788 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
546733 GTCAAGACTG
546743 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
546767 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
546789 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 546243 -- 546742
CAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
Right flanking sequence: Indices 546789 -- 547288
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCAC
CATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCCTTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGAC
TCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCA
Found at i:546907 original size:28 final size:28
Alignment explanation
Indices: 546796--546897 Score: 195
Period size: 28 Copynumber: 3.6 Consensus size: 28
546786 ATTGCAATTC
546796 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
546824 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
546852 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
*
546880 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
546898 CATACCAACA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 546296 -- 546795
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 546898 -- 547397
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTC
CGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACC
ATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTC
AGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAG
Found at i:547199 original size:76 final size:79
Alignment explanation
Indices: 547073--547231 Score: 234
Period size: 76 Copynumber: 2.0 Consensus size: 79
547063 TTATCAAAAA
*
547073 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
547135 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
547149 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
547214 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
547230 GG
1 GG
547232 AAAGGTCAGG
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.70
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 546573 -- 547072
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCAC
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTC
CGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACC
ATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 547232 -- 547731
AAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTTC
TGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACT
CATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAG
GTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
Found at i:547221 original size:43 final size:42
Alignment explanation
Indices: 547051--547222 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
547041 TTGTATGTCA
* * *
547051 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * *
547094 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
547132 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
547170 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
547213 TCAGGACTGA
1 TCAGGACTGA
547223 TTCTTCTGGA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 53 0.54
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 546551 -- 547050
AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCT
TGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACT
CATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCACCTTACCATACAAGACTCCTTTGTATGTCA
Right flanking sequence: Indices 547223 -- 547722
TTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTC
AGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGA
TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAA
AATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATT
GCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
Found at i:547291 original size:19 final size:18
Alignment explanation
Indices: 547263--547328 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
547253 AAAAGTCAGG
*
547263 AAGGTGAGGACTGTTTTGA
1 AAGGTCAGGACT-TTTTGA
*
547282 AAGGTCAGGACTTTCTGGA
1 AAGGTCAGGACTTT-TTGA
* *
547301 AAGGTCAAGAC--TCTGA
1 AAGGTCAGGACTTTTTGA
547317 AAGGTCAGGACT
1 AAGGTCAGGACT
547329 AATGAGAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 12 0.31
17 1 0.03
18 2 0.05
19 24 0.62
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (18 bp):
AAGGTCAGGACTTTTTGA
Left flanking sequence: Indices 546763 -- 547262
TTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTG
CTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTA
CTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACC
TTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 547329 -- 547828
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTCACCATACCAACATGAGTACTCACTATACCAAA
AAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCC
Found at i:547320 original size:16 final size:16
Alignment explanation
Indices: 547279--547328 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 16
547269 AGGACTGTTT
547279 TGAAAGGTCAGGACTTTC
1 TGAAAGGTCAGGAC--TC
*
547297 TGGAAAGGTCAAGACTC
1 T-GAAAGGTCAGGACTC
547314 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
547329 AATGAGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 13 0.45
17 3 0.10
18 1 0.03
19 12 0.41
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 546779 -- 547278
AGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACAT
GAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTC
CTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTT
Right flanking sequence: Indices 547329 -- 547828
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTCACCATACCAACATGAGTACTCACTATACCAAA
AAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCC
Found at i:547465 original size:43 final size:43
Alignment explanation
Indices: 547437--547554 Score: 166
Period size: 43 Copynumber: 2.7 Consensus size: 43
547427 ATTCTTCTGG
*
547437 AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAA
1 AAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAA
* * *
547480 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAA
* *
547523 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
547555 TTTGATGGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 5 0.07
43 63 0.93
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (43 bp):
AAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAA
Left flanking sequence: Indices 546937 -- 547436
GACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
CCAAACAGGTCAGGACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTT
TGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
Right flanking sequence: Indices 547555 -- 548054
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
TCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTAT
GCCTTCCAAAATCCATGACAATTGCAAATTGATGTCCTTTCAAGTCCAAAAAAATGACATTCACT
CTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAAAGGTCAAG
CCAAAGCTTTGCGAGATTCAAAGACAAAGTCAAAAGCACTAATGCCAACTATCAGATTGAAAGCC
ATTTCCGTCAGAGCTTCGCTTTGCGAGTTCCCTTCTTTCAGAAAG
Found at i:547492 original size:24 final size:24
Alignment explanation
Indices: 547460--547536 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
547450 GTATTTCACA
*
547460 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
547484 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
547503 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
547527 GTCAAGACTG
1 GTCAAGACTG
547537 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 546960 -- 547459
TTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTT
ACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAG
GTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACA
Right flanking sequence: Indices 547537 -- 548036
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTT
CCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTCCTTTCAAGTCC
AAAAAAATGACATTCACTCTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGTGT
GCTTTGTCAAAGGTCAAGCCAAAGCTTTGCGAGATTCAAAGACAAAGTCAAAAGCACTAATGCCA
ACTATCAGATTGAAAGCCATTTCCGTCAGAGCTTCGCTTTGCGAG
Found at i:547511 original size:19 final size:19
Alignment explanation
Indices: 547441--547511 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
547431 TTCTGGAAAG
* *
547441 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
547460 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
547483 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
547503 GTCAGGACT
1 GTCAAGACT
547512 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 546941 -- 547440
CATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAG
GTGAGGACTGTTTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGAAAG
Right flanking sequence: Indices 547512 -- 548011
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTCACCATACCAACATGAGTACT
CACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAAT
TGCAAATTGATGTCCTTTCAAGTCCAAAAAAATGACATTCACTCTGATAGTGGTTCGTTTGGACA
TTGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAAAGGTCAAGCCAAAGCTTTGCGAGATTCAAA
GACAAAGTCAAAAGCACTAATGCCAACTATCAGATTGAAAGCCAT
Found at i:547718 original size:28 final size:28
Alignment explanation
Indices: 547686--547749 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
547676 TTGCAATTGT
547686 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
547714 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
547742 ATGCCATT
1 ATGCCATT
547750 TCACCATACC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 547186 -- 547685
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTAT
GGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 547750 -- 548249
TCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTAT
GCCTTCCAAAATCCATGACAATTGCAAATTGATGTCCTTTCAAGTCCAAAAAAATGACATTCACT
CTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAAAGGTCAAG
CCAAAGCTTTGCGAGATTCAAAGACAAAGTCAAAAGCACTAATGCCAACTATCAGATTGAAAGCC
ATTTCCGTCAGAGCTTCGCTTTGCGAGTTCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCT
TTGCTCGTGACGTGACATGACACGCAATTCAAAGTTGCGAGTTCCCTGACGCAATTCAAAGTTGT
CCCTAACGCAATGAAATGCGAGTGCTTTGATCTTTCTCGCGTAAAAGGCGCGTATATCGCGCTTG
TCTTGAGCCCTTTTTAGCGGAAGCCTACCCTGACCCCCTTGCTTT
Found at i:547801 original size:44 final size:43
Alignment explanation
Indices: 547722--547806 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 43
547712 AAATGCCATT
547722 AGTACTCACTTGACAAACAAATGCCATTTCACCATACCAACATG
1 AGTACTCACTTGACAAACAAATGCCATTTCACCATA-CAACATG
*
547766 AGTACTCACTAT-ACCAAA-AAGATGCCATTT-TCCATACAACA
1 AGTACTCACT-TGA-CAAACAA-ATGCCATTTCACCATACAACA
547807 AATTGTATGC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
43 5 0.14
44 18 0.49
45 14 0.38
ACGTcount: A:0.40, C:0.28, G:0.08, T:0.24
Consensus pattern (43 bp):
AGTACTCACTTGACAAACAAATGCCATTTCACCATACAACATG
Left flanking sequence: Indices 547222 -- 547721
ATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGT
CAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
ATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
AAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCAT
TGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATT
Right flanking sequence: Indices 547807 -- 548306
AATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTCCTTTCAAGTCCAAAAAAATGA
CATTCACTCTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAA
AGGTCAAGCCAAAGCTTTGCGAGATTCAAAGACAAAGTCAAAAGCACTAATGCCAACTATCAGAT
TGAAAGCCATTTCCGTCAGAGCTTCGCTTTGCGAGTTCCCTTCTTTCAGAAAGCACTCGCAAAGC
GTAGGGCTTTGCTCGTGACGTGACATGACACGCAATTCAAAGTTGCGAGTTCCCTGACGCAATTC
AAAGTTGTCCCTAACGCAATGAAATGCGAGTGCTTTGATCTTTCTCGCGTAAAAGGCGCGTATAT
CGCGCTTGTCTTGAGCCCTTTTTAGCGGAAGCCTACCCTGACCCCCTTGCTTTCTATCGATATGG
GCCAGCAGATTCCTGGTGTCAATCAAAGTCAGAAAGCGCCCGTCT
Found at i:550699 original size:43 final size:43
Alignment explanation
Indices: 550635--550790 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 43
550625 TTGTATGTCA
* * *
550635 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
550678 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
** * *
550716 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
*
550754 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
550791 GAAAGGTCAG
Statistics
Matches: 83, Mismatches: 18, Indels: 24
0.66 0.14 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 16 0.19
39 6 0.07
41 1 0.01
43 44 0.53
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 550135 -- 550634
TCATCCACGGATATGAGGAATACACAGCGCTCTGGTAAACAAGCAAAGAGTGGAACCTCCGCTCC
GGTTGATTTGCCTGCTCAGCCGCAACTCCTAAAAGGGGCTCAGCGCCTTGGTCTATAGGACTGTC
TTGCTTGCCAGTTAGGCGAGTGTTTTCGTGTCTGGTGATGAGGGCTTTTTTTGTGAGGAAGTAAG
CTGAAGCTAGTCCCTCTCGCAAGGTTGATCTGTTGACTTTGTAGTAGTAATGTGGTACGGTTTTG
CAGGGAGGGGCTGGGCGGAGCAAGTGAAGATAAAGAAGGTTCTGTCTCTCCCGATAAAACGGAGT
CTCTTGAATCAACTACTCTCTTCCTTGCCTTTCAAGCAAGCATGGGAATAAGGAGGTTAGTGCTA
GAGTTTGAGATGTGGAAGCAGTCCCACAAGCAAAGGAAAGGAGATTATTGAAAAGAAATTATGGA
AAGGTTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 550791 -- 551290
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
Found at i:550995 original size:76 final size:76
Alignment explanation
Indices: 550909--551130 Score: 329
Period size: 76 Copynumber: 2.9 Consensus size: 76
550899 ACCTTTTTTG
550909 AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA-GTCAGGAC
1 AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA-AGGTCAGGAC
550973 TAACCTTACCAA
65 TAACCTTACCAA
*
550985 AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACT
1 AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACT
*
551050 GACCTTACCAA
66 AACCTTACCAA
* * **
551061 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
1 AAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCA
551126 GGACT
61 GGACT
551131 GATTATGGAA
Statistics
Matches: 133, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
75 1 0.01
76 86 0.65
77 2 0.02
79 1 0.01
81 43 0.32
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (76 bp):
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACT
AACCTTACCAA
Left flanking sequence: Indices 550409 -- 550908
GCGGAGCAAGTGAAGATAAAGAAGGTTCTGTCTCTCCCGATAAAACGGAGTCTCTTGAATCAACT
ACTCTCTTCCTTGCCTTTCAAGCAAGCATGGGAATAAGGAGGTTAGTGCTAGAGTTTGAGATGTG
GAAGCAGTCCCACAAGCAAAGGAAAGGAGATTATTGAAAAGAAATTATGGAAAGGTTCTTGAAAG
GTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTG
Right flanking sequence: Indices 551131 -- 551630
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGT
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTAC
Found at i:551046 original size:38 final size:38
Alignment explanation
Indices: 551004--551134 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
550994 GACTATCTGA
* **
551004 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
551042 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
551085 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
551123 TCAGGACTGATT
1 TCAGGACTGATT
551135 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 550504 -- 551003
GGAATAAGGAGGTTAGTGCTAGAGTTTGAGATGTGGAAGCAGTCCCACAAGCAAAGGAAAGGAGA
TTATTGAAAAGAAATTATGGAAAGGTTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 551135 -- 551634
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTACTCAC
Found at i:551085 original size:19 final size:19
Alignment explanation
Indices: 551061--551131 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
551051 ACCTTACCAA
551061 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
551080 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
551100 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
551118 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
551132 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 550561 -- 551060
AAAGGAGATTATTGAAAAGAAATTATGGAAAGGTTCTTGAAAGGTCAGGAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 551132 -- 551631
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTA
TGCCATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTACT
Found at i:551374 original size:43 final size:42
Alignment explanation
Indices: 551209--551378 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
551199 TTGTATGTCA
* * * *
551209 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
551252 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
551290 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
551328 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
551371 TCAGGACT
1 TCAGGACT
551379 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 550709 -- 551208
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
TTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 551379 -- 551878
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAAT
GTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGA
Found at i:551485 original size:24 final size:22
Alignment explanation
Indices: 551456--551518 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
551446 GTCAAGACTG
551456 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTC--TCT
* *
551480 TCTTGAAAGGTGAAGA--CTCT
1 TCTTGAAAGGTCAGGACTCTCT
551500 T-TTGAAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGGACTCT
551519 GAAAGGTCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 12 0.36
20 4 0.12
21 2 0.06
22 1 0.03
24 14 0.42
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTCTCT
Left flanking sequence: Indices 550956 -- 551455
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 551519 -- 552018
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATT
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTA
CTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACA
GGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
Found at i:551516 original size:19 final size:19
Alignment explanation
Indices: 551441--551532 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 19
551431 ACCAAAAATG
* * *
551441 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAGGACTCTTTT
551460 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGA--C--TCTT-TT
* *
551484 GAAAGGTGAAGACTCTTTT
1 GAAAGGTCAGGACTCTTTT
551503 GAAAGGTCAGGACTC---T
1 GAAAGGTCAGGACTCTTTT
551519 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
551533 AATGAGAATG
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 15 0.25
19 26 0.43
20 4 0.07
21 1 0.02
22 1 0.02
23 2 0.03
24 12 0.20
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (19 bp):
GAAAGGTCAGGACTCTTTT
Left flanking sequence: Indices 550941 -- 551440
TTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 551533 -- 552032
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAA
ACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATT
ATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
Found at i:551523 original size:16 final size:16
Alignment explanation
Indices: 551502--551532 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
551492 AAGACTCTTT
551502 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
551518 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
551533 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 551002 -- 551501
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTT
Right flanking sequence: Indices 551533 -- 552032
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAA
ACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATT
ATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
Found at i:551626 original size:32 final size:32
Alignment explanation
Indices: 551580--551675 Score: 130
Period size: 32 Copynumber: 3.1 Consensus size: 32
551570 GACTCATTGC
551580 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATTGTATGCCATTAGTACTCACTTGACAACA
*
551612 AATTGTATGTCATTAGTACTCACTTGACAA-A
1 AATTGTATGCCATTAGTACTCACTTGACAACA
551643 CAA----ATGCCATTAGTACTCACTTGACAAACA
1 -AATTGTATGCCATTAGTACTCACTTGAC-AACA
551673 AAT
1 AAT
551676 GCCATTAGTA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
28 21 0.36
29 4 0.07
30 1 0.02
31 1 0.02
32 31 0.53
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (32 bp):
AATTGTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 551080 -- 551579
AAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGC
Right flanking sequence: Indices 551676 -- 552175
GCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACT
GTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
Found at i:551654 original size:28 final size:28
Alignment explanation
Indices: 551586--551718 Score: 180
Period size: 28 Copynumber: 4.6 Consensus size: 28
551576 TTGCAATTGT
551586 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
*
551614 TTGTATGTCATTAGTACTCACTTGACAAACAA
1 ----ATGCCATTAGTACTCACTTGACAAACAA
551646 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
551674 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
*
551702 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
551719 CATACCAAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
27 2 0.02
28 68 0.71
32 23 0.24
33 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 551086 -- 551585
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGT
Right flanking sequence: Indices 551719 -- 552218
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCA
GGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
Found at i:551754 original size:19 final size:17
Alignment explanation
Indices: 551730--551775 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
551720 ATACCAAAAC
551730 AGGTCAGGACTGTCTGGAA
1 AGGTCAGGACT-TCT-GAA
*
551749 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
551765 AGGTCAGGACT
1 AGGTCAGGACT
551776 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 551230 -- 551729
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
TCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 551776 -- 552275
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCAT
TTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
Found at i:551924 original size:21 final size:21
Alignment explanation
Indices: 551900--551965 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
551890 AAAGGTCAAG
551900 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
** *
551921 ACTCACCTG-A--CCATACAAG-
1 ACTCATTTGTATGTCAT-C-AGT
551940 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
551961 ACTCA
1 ACTCA
551966 CCTTATCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 3 0.09
19 8 0.24
20 6 0.18
21 13 0.39
22 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (21 bp):
ACTCATTTGTATGTCATCAGT
Left flanking sequence: Indices 551400 -- 551899
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACC
AAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAG
Right flanking sequence: Indices 551966 -- 552465
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Found at i:552019 original size:43 final size:42
Alignment explanation
Indices: 551956--552125 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
551946 TTGTATGTCA
* * * *
551956 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
551999 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
552037 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
552075 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
552118 TCAGGACT
1 TCAGGACT
552126 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 551456 -- 551955
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAAGACTCTTTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCATTGCAATTGT
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACT
CACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGG
TCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 552126 -- 552625
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
Found at i:552333 original size:19 final size:19
Alignment explanation
Indices: 552306--552376 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
552296 TATCAAAAAG
552306 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
552325 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
552348 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
552368 GTCAGGACT
1 GTCAAGACT
552377 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 551806 -- 552305
ACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 552377 -- 552876
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
Found at i:552353 original size:43 final size:43
Alignment explanation
Indices: 552292--552923 Score: 359
Period size: 43 Copynumber: 15.0 Consensus size: 43
552282 ATTAGTACTC
* *
552292 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
* * *
552335 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
*
552378 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGACTG
* *
552421 A--TTCTTC----TGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGACTG
* * **
552459 ATTCTTCT-TGAAAGGTCAAGAC--TC--TGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGAC---TG
** * * *** * * * *
552502 AGAATGATTGAGGAATGACCATCAAGAC--TCATTTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACTGTC-TTTGAAAG---TCAGGACTG
*
552553 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
* * *
552596 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
*
552639 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGACTG
* *
552682 A--TTCTTC----TGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGACTG
* * ** *
552720 A-TTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA-TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
* * *
552761 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
* * *
552804 ACCTTACCAAAAAGATCAAGACTATC--TG--A-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
* * * * *
552842 A--TTCTTC----TGGTCAAGACTGTATTTCAAGGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
*
552880 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAA-GTCAGGACTG
552923 A
1 A
552924 TTCTTCTGGT
Statistics
Matches: 465, Mismatches: 74, Indels: 100
0.73 0.12 0.16
Matches are distributed among these distances:
33 10 0.02
35 1 0.00
36 2 0.00
37 1 0.00
38 84 0.18
39 4 0.01
40 17 0.04
41 34 0.07
42 22 0.05
43 245 0.53
44 1 0.00
45 8 0.02
46 5 0.01
47 5 0.01
49 12 0.03
50 2 0.00
51 3 0.01
52 3 0.01
54 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTGAAAGTCAGGACTG
Left flanking sequence: Indices 551792 -- 552291
GAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCAT
TATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 552924 -- 553423
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Found at i:552358 original size:113 final size:116
Alignment explanation
Indices: 552113--552358 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
552103 GACTGTCTTG
*
552113 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
552177 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
552232 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
552296 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
552345 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
552359 TCTTTCACAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 551613 -- 552112
ATTGTATGTCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGT
CTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGA
AGGTGAGGACTTTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 552359 -- 552858
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
Found at i:552412 original size:19 final size:19
Alignment explanation
Indices: 552388--552497 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
552378 ACCTTACCAA
552388 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552407 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
552427 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552445 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
552469 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
552485 AAAGGTCAGGACT
1 AAAGGTCAAGACT
552498 AATGAGAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
16 13 0.18
17 6 0.08
19 33 0.46
21 4 0.06
24 16 0.22
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 551888 -- 552387
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 552498 -- 552997
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
Found at i:552442 original size:38 final size:38
Alignment explanation
Indices: 552391--552466 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
552381 TTACCAAAAA
552391 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
552429 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
552467 TGAAAGGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 551891 -- 552390
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 552467 -- 552966
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
TTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATG
Found at i:552488 original size:16 final size:16
Alignment explanation
Indices: 552467--552497 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
552457 TGATTCTTCT
552467 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
552483 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
552498 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 551967 -- 552466
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 552498 -- 552997
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
Found at i:552591 original size:261 final size:252
Alignment explanation
Indices: 552273--553112 Score: 958
Period size: 261 Copynumber: 3.3 Consensus size: 252
552263 CCAATTGCAA
* * *
552273 TTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
1 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
552338 TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
552403 CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
131 CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-TTCTT
*
552468 GAAAGGTCAAGACTC-TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
195 GAAAGGTCAAGACTCATGAAA-GTCA-G-CTAATGAG--T-A-TCA--AATGACCATCAAGACTC
552532 AT
251 AT
552534 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
1 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
552599 TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
552664 CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
131 CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGA-TTTTCTT
* * * *** *
552729 GAAAGGTCAAGACTGTCTTGAAA-TCAG-TACTGACCTTATCAAA--AAGGTCAAGACT-GT
195 GAAAGGTCAAGAC--TCATGAAAGTCAGCTAATGA--GTATCAAATGACCATCAAGACTCAT
* ** * * * * * *
552786 CT-T-TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-TCAGGACTGA-
1 TTGTATGTCA-TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
* * * *
552843 -TTCTTC----TGGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
65 CTT-ATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAAGGTCAAGAC
552902 TGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TT-
128 TGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTC
* * * * * * * **
552964 ATGGAAGGACAGGAC-CAATTGCAATTGT-ATGC-CATTAGTACTCACCTGACCATACAAGACTC
193 TTGAAAGGTCAAGACTC-A-TG-AA-AGTCA-GCTAATGAGTA-TCAAATGACCAT-CAAGACTC
553026 AT
251 AT
553028 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
1 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
* *
553093 TTACCAAAAAGATCAAGACT
66 TTATCAAAAAGGTCAAGACT
553113 ATCTGATCAG
Statistics
Matches: 493, Mismatches: 52, Indels: 76
0.79 0.08 0.12
Matches are distributed among these distances:
234 1 0.00
236 2 0.00
237 15 0.03
238 6 0.01
239 4 0.01
240 3 0.01
241 115 0.23
242 2 0.00
243 31 0.06
244 5 0.01
245 3 0.01
246 10 0.02
247 2 0.00
248 10 0.02
249 2 0.00
250 5 0.01
251 31 0.06
252 2 0.00
253 18 0.04
255 2 0.00
257 2 0.00
258 1 0.00
259 6 0.01
261 203 0.41
262 5 0.01
263 2 0.00
264 5 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (252 bp):
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTCTTG
AAAGGTCAAGACTCATGAAAGTCAGCTAATGAGTATCAAATGACCATCAAGACTCAT
Left flanking sequence: Indices 551773 -- 552272
ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATAC
CAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
Right flanking sequence: Indices 553113 -- 553612
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
Found at i:552594 original size:19 final size:19
Alignment explanation
Indices: 552567--552637 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
552557 TATCAAAAAG
552567 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
552586 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
*
552609 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCAAA
*
552629 GTCAGGACT
1 GTCAAGACT
552638 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 552067 -- 552566
TTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 552638 -- 553137
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
Found at i:552673 original size:19 final size:19
Alignment explanation
Indices: 552649--552751 Score: 93
Period size: 19 Copynumber: 5.2 Consensus size: 19
552639 ACCTTACCAA
552649 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552668 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
552688 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552706 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
552730 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
552749 AAA
1 AAA
552752 TCAGTACTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
17 4 0.06
19 41 0.61
21 4 0.06
24 18 0.27
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 552149 -- 552648
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 552752 -- 553251
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
Found at i:552703 original size:38 final size:39
Alignment explanation
Indices: 552652--552963 Score: 193
Period size: 38 Copynumber: 7.8 Consensus size: 39
552642 TTACCAAAAA
552652 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCAT
* *
552690 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA---TTCTT-CAT
* * *
552733 GGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-ATCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTC---AT
* * ** *
552774 GGTCAAGACTGTCTTTCACA-GTCAGGACT-AACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT--C---AT
* *
552817 GATCAAGACTATC-TG--A--TCAGGACTGATTCTTC-T
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCAT
* ** * *
552850 GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--C---AT
552893 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCAT
552931 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
552964 ATGGAAGGAC
Statistics
Matches: 218, Mismatches: 30, Indels: 52
0.73 0.10 0.17
Matches are distributed among these distances:
33 10 0.05
34 1 0.00
36 1 0.00
37 4 0.02
38 82 0.38
39 7 0.03
40 2 0.01
41 31 0.14
42 6 0.03
43 71 0.33
44 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (39 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCAT
Left flanking sequence: Indices 552152 -- 552651
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 552964 -- 553463
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
Found at i:552774 original size:165 final size:161
Alignment explanation
Indices: 552544--552923 Score: 546
Period size: 165 Copynumber: 2.3 Consensus size: 161
552534 TTGTATGTCA
* * * *
552544 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAA
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTATCAAAAA
* *
552609 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
65 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--T
*
552674 CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
125 CAGGACTGATTCTTCTGGTCAAGACTGTATTGAAAGG
** * *** *
552711 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAAAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTATCAAAAAG
552775 GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
66 GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
**
552840 TGATTCTTCTGGTCAAGACTGTATTTCAAGG
131 TGATTCTTCTGGTCAAGACTGTATTGAAAGG
552871 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA
552924 TTCTTCTGGT
Statistics
Matches: 188, Mismatches: 23, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
160 70 0.37
162 10 0.05
164 2 0.01
165 75 0.40
166 5 0.03
167 26 0.14
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (161 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTGAAAGG
Left flanking sequence: Indices 552044 -- 552543
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 552924 -- 553423
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Found at i:552914 original size:19 final size:19
Alignment explanation
Indices: 552890--552960 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
552880 ACCTTACCAA
552890 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552909 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
552929 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
552947 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
552961 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 552390 -- 552889
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 552961 -- 553460
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
Found at i:553101 original size:43 final size:42
Alignment explanation
Indices: 553038--553207 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
553028 TTGTATGTCA
* * * *
553038 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
553081 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
553119 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
553157 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
553200 TCAGGACT
1 TCAGGACT
553208 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 552538 -- 553037
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 553208 -- 553707
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTC
Found at i:553113 original size:286 final size:286
Alignment explanation
Indices: 552747--554069 Score: 1310
Period size: 286 Copynumber: 4.6 Consensus size: 286
552737 AAGACTGTCT
* *
552747 TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
1 TGAAATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
552812 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
66 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
552877 CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
131 CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
552942 TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
196 TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
553007 ACCTGACCATACAAGACTCATTTGTA
261 ACCTGACCATACAAGACTCATTTGTA
** *
553033 TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACC
1 TGAAATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
553098 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGG
66 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGG
* **
553162 ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT--TT-TGATGG--AAGGAC
130 ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAA-GAC
* * ** * * * *** ** * * * * *
553222 AGGACCAATTGCAATTGT-ATG-C-CATTA-GTACTCACCTGACCAA---AAATGGAAAGGTCA-
194 -TG-TC--TTG-AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG-TATGCCAT
** * * * *
553279 -AG-ACTGTCTTGA-AAGGT-CAGGACTCATTCT-TC
253 TAGTACTCACCTGACCA--TACAAGACTCATT-TGTA
* ** ** * * *
553311 TGGAAAGGTCAGGACT---CTT-T-TGAAAGGTCAAGAC--TCATTTGTATGTCATCAGTACTCA
1 T-GAAA--TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC-TTTCAAAG---TCAGGACTAA
* * * * ** * *
553369 CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAAAAAGATCAAGAC
59 CCTTACCAAAAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C----TGGTCAAGAC
* * * * * * *
553433 --TA--TC-TGATCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACA-GTCAGGACT
113 TGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
* * *
553486 GA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-TTTGATGGAAGGACAGGACC
176 GATTCTT--C----TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACC
* * ** *
553549 AATTGCAATTGTATGCCATTAGTACTCACCTGACCA-AAAATGGAAAGGTCAAGACTGTCT
234 AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA--G--A-CTC-A-TTTGT-A
*
553609 TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
1 TGAAATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
553674 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
66 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
553739 CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
131 CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
553804 TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
196 TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
553869 ACCTGACCATACAAGACTCATTTGTA
261 ACCTGACCATACAAGACTCATTTGTA
** *
553895 TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
1 TGAAATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
553960 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGG
66 AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGG
* *
554024 ACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT
130 ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
554070 TTTGATGGAA
Statistics
Matches: 823, Mismatches: 125, Indels: 178
0.73 0.11 0.16
Matches are distributed among these distances:
274 2 0.00
275 5 0.01
276 12 0.01
277 2 0.00
278 72 0.09
279 10 0.01
280 6 0.01
281 13 0.02
282 13 0.02
283 38 0.05
284 16 0.02
285 3 0.00
286 354 0.43
287 12 0.01
288 23 0.03
289 6 0.01
290 6 0.01
291 7 0.01
292 9 0.01
293 100 0.12
294 12 0.01
295 9 0.01
296 3 0.00
297 10 0.01
298 57 0.07
299 4 0.00
300 12 0.01
301 5 0.01
302 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (286 bp):
TGAAATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCATACAAGACTCATTTGTA
Left flanking sequence: Indices 552247 -- 552746
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 554070 -- 554569
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAATAAAATGCTCTTAGTGCTAA
CCATACCAAAATGGCAATTGTATGCCATTAGTGCTGACCATATCACAAATGCAATTAGATGCCAT
TAGTGTTGACCATACAAATCAAGTGAAGGTCTCAAGTTCAAGCTTCTTTTTCTAGAAAAGGTCTT
TTGTTTACTCATTATTATGATTGTGGTCAGTAAGGTAAAGAAGAGGAAGGCAAAGAGTGGACTAA
GCAAGGGCAGACTGAGTAATTTAGAGGGGTGAGGGGCAAACAAGT
Found at i:553294 original size:19 final size:19
Alignment explanation
Indices: 553270--553346 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
553260 ACCAAAAATG
*
553270 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTCTCTT
*
553289 GAAAGGTCAGGACTCATTCTTCT
1 GAAAGGTCAAGACTC--TC-T-T
* *
553312 GGAAAGGTCAGGACTCTTTT
1 -GAAAGGTCAAGACTCTCTT
553332 GAAAGGTCAAGACTC
1 GAAAGGTCAAGACTC
553347 ATTTGTATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 2 0.04
23 1 0.02
24 15 0.31
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (19 bp):
GAAAGGTCAAGACTCTCTT
Left flanking sequence: Indices 552770 -- 553269
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 553347 -- 553846
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
Found at i:553316 original size:24 final size:21
Alignment explanation
Indices: 553287--553350 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 21
553277 CAAGACTGTC
553287 TTGAAAGGTCAGGACTCATTCT
1 TTGAAAGGTCAGGACTCATT-T
553309 TCTGGAAAGGTCAGGACTC--TT
1 T-T-GAAAGGTCAGGACTCATTT
*
553330 TTGAAAGGTCAAGACTCATTT
1 TTGAAAGGTCAGGACTCATTT
553351 GTATGTCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
21 4 0.11
22 2 0.05
23 1 0.03
24 15 0.41
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (21 bp):
TTGAAAGGTCAGGACTCATTT
Left flanking sequence: Indices 552787 -- 553286
TTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Right flanking sequence: Indices 553351 -- 553850
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
Found at i:553334 original size:43 final size:43
Alignment explanation
Indices: 553268--553349 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
553258 TGACCAAAAA
* *
553268 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
* *
553311 TGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATT
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATT
553350 TGTATGTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
Left flanking sequence: Indices 552768 -- 553267
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Right flanking sequence: Indices 553350 -- 553849
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
Found at i:553385 original size:321 final size:321
Alignment explanation
Indices: 553018--553613 Score: 1174
Period size: 321 Copynumber: 1.9 Consensus size: 321
553008 CCTGACCATA
553018 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
*
553083 AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
553148 ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
131 ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
553213 TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
196 TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
553278 AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGT
261 AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGT
553339 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
553404 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
*
553469 ATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
131 ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
553534 TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
196 TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
553599 AAGACTGTCTTGAAA
261 AAGACTGTCTTGAAA
553614 TCAGTACTGA
Statistics
Matches: 273, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
321 273 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (321 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGT
Left flanking sequence: Indices 552518 -- 553017
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
Right flanking sequence: Indices 553614 -- 554113
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
Found at i:553424 original size:43 final size:42
Alignment explanation
Indices: 553359--553528 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
553349 TTGTATGTCA
* * *
553359 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
553402 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
553440 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
553478 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
553521 TCAGGACT
1 TCAGGACT
553529 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 552859 -- 553358
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 553529 -- 554028
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
Found at i:553507 original size:76 final size:78
Alignment explanation
Indices: 553381--553821 Score: 295
Period size: 76 Copynumber: 5.4 Consensus size: 78
553371 TTATCAAAAA
* * *
553381 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
553444 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
553457 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
553522 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
553539 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACC---AA---AAAGGTCAAGA
* * *
553603 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
553636 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
553699 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
553712 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
553777 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
* *
553793 GGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 GGTCAAGACTGTATTTCAAA-GTCAGGACT
553822 GATTATGGAA
Statistics
Matches: 281, Mismatches: 48, Indels: 67
0.71 0.12 0.17
Matches are distributed among these distances:
76 102 0.36
77 4 0.01
79 4 0.01
80 8 0.03
81 62 0.22
82 7 0.02
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 552881 -- 553380
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 553822 -- 554321
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTATACCAATAAAATGCTCTT
Found at i:553638 original size:41 final size:43
Alignment explanation
Indices: 553592--553783 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
553582 CCAAAAATGG
* * * *
553592 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
553633 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
553676 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
553711 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
553752 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
553784 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 553092 -- 553591
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 553784 -- 554283
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACA
Found at i:553737 original size:38 final size:38
Alignment explanation
Indices: 553695--553825 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
553685 GACTATCTGA
* **
553695 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
553733 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
553776 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
553814 TCAGGACTGATT
1 TCAGGACTGATT
553826 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 553195 -- 553694
AAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGA
CTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 553826 -- 554325
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTATACCAATAAAATGCTCTTAGTG
Found at i:553776 original size:19 final size:19
Alignment explanation
Indices: 553752--553822 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
553742 ACCTTACCAA
553752 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
553771 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
553791 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
553809 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
553823 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 553252 -- 553751
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAA
GGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 553823 -- 554322
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTATACCAATAAAATGCTCTTA
Found at i:554150 original size:95 final size:99
Alignment explanation
Indices: 554038--554231 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
554028 ACCTGACCAA
* *
554038 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
554099 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
554133 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
554198 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
554232 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 553538 -- 554037
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAA
Right flanking sequence: Indices 554232 -- 554731
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTATACCAATAAAATGCTCTTAGTGCTAACCATACCAAAATGGCAATTGTATGCCATTAGT
GCTGACCATATCACAAATGCAATTAGATGCCATTAGTGTTGACCATACAAATCAAGTGAAGGTCT
CAAGTTCAAGCTTCTTTTTCTAGAAAAGGTCTTTTGTTTACTCATTATTATGATTGTGGTCAGTA
AGGTAAAGAAGAGGAAGGCAAAGAGTGGACTAAGCAAGGGCAGACTGAGTAATTTAGAGGGGTGA
GGGGCAAACAAGTGAGGAAGGCTGCGGGTGGAGCTTGAACAGAAAGCGAAGCGAGCCAAGGGAAC
CACTCGTTGGGTGGTGTCCACTTCGTTCCTCGTCGTGGAGCGGAACAGGTGGAAGCAACCGATCT
CCACCTCTGAAAAATCAAAATGAGCCGAAGACCTCAATCGAACAT
Found at i:554176 original size:24 final size:24
Alignment explanation
Indices: 554147--554192 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
554137 GTCAAGACTG
554147 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
554171 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
554193 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 553647 -- 554146
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 554193 -- 554692
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAATAAAATGCTCTTA
GTGCTAACCATACCAAAATGGCAATTGTATGCCATTAGTGCTGACCATATCACAAATGCAATTAG
ATGCCATTAGTGTTGACCATACAAATCAAGTGAAGGTCTCAAGTTCAAGCTTCTTTTTCTAGAAA
AGGTCTTTTGTTTACTCATTATTATGATTGTGGTCAGTAAGGTAAAGAAGAGGAAGGCAAAGAGT
GGACTAAGCAAGGGCAGACTGAGTAATTTAGAGGGGTGAGGGGCAAACAAGTGAGGAAGGCTGCG
GGTGGAGCTTGAACAGAAAGCGAAGCGAGCCAAGGGAACCACTCGTTGGGTGGTGTCCACTTCGT
TCCTCGTCGTGGAGCGGAACAGGTGGAAGCAACCGATCTCCACCT
Found at i:554232 original size:28 final size:28
Alignment explanation
Indices: 554200--554302 Score: 190
Period size: 28 Copynumber: 3.7 Consensus size: 28
554190 ATTGCAATTC
554200 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
554228 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
554256 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
554284 AATGCCATTAGTACTCACT
1 AATGCCATTAGTACTCACT
554303 ATACCAATAA
Statistics
Matches: 73, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
27 2 0.03
28 69 0.95
29 2 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 553700 -- 554199
ACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 554303 -- 554802
ATACCAATAAAATGCTCTTAGTGCTAACCATACCAAAATGGCAATTGTATGCCATTAGTGCTGAC
CATATCACAAATGCAATTAGATGCCATTAGTGTTGACCATACAAATCAAGTGAAGGTCTCAAGTT
CAAGCTTCTTTTTCTAGAAAAGGTCTTTTGTTTACTCATTATTATGATTGTGGTCAGTAAGGTAA
AGAAGAGGAAGGCAAAGAGTGGACTAAGCAAGGGCAGACTGAGTAATTTAGAGGGGTGAGGGGCA
AACAAGTGAGGAAGGCTGCGGGTGGAGCTTGAACAGAAAGCGAAGCGAGCCAAGGGAACCACTCG
TTGGGTGGTGTCCACTTCGTTCCTCGTCGTGGAGCGGAACAGGTGGAAGCAACCGATCTCCACCT
CTGAAAAATCAAAATGAGCCGAAGACCTCAATCGAACATGATTCTGGCGGTCCAGCGCCGATTCA
AATTGGATAGAAAAAGACGCTCGAGTGGTTGTAAAGGACAATAAT
Found at i:554370 original size:37 final size:37
Alignment explanation
Indices: 554320--554409 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 37
554310 TAAAATGCTC
*
554320 TTAGTGCTAACCATACCA-AAATGGCAATT-GTATGCCA
1 TTAGTGCTGACCATACCACAAAT-GCAATTAG-ATGCCA
*
554357 TTAGTGCTGACCATATCACAAATGCAATTAGATGCCA
1 TTAGTGCTGACCATACCACAAATGCAATTAGATGCCA
*
554394 TTAGTGTTGACCATAC
1 TTAGTGCTGACCATAC
554410 AAATCAAGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
37 42 0.89
38 5 0.11
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (37 bp):
TTAGTGCTGACCATACCACAAATGCAATTAGATGCCA
Left flanking sequence: Indices 553820 -- 554319
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTGACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTATACCAATAAAATGCTC
Right flanking sequence: Indices 554410 -- 554909
AAATCAAGTGAAGGTCTCAAGTTCAAGCTTCTTTTTCTAGAAAAGGTCTTTTGTTTACTCATTAT
TATGATTGTGGTCAGTAAGGTAAAGAAGAGGAAGGCAAAGAGTGGACTAAGCAAGGGCAGACTGA
GTAATTTAGAGGGGTGAGGGGCAAACAAGTGAGGAAGGCTGCGGGTGGAGCTTGAACAGAAAGCG
AAGCGAGCCAAGGGAACCACTCGTTGGGTGGTGTCCACTTCGTTCCTCGTCGTGGAGCGGAACAG
GTGGAAGCAACCGATCTCCACCTCTGAAAAATCAAAATGAGCCGAAGACCTCAATCGAACATGAT
TCTGGCGGTCCAGCGCCGATTCAAATTGGATAGAAAAAGACGCTCGAGTGGTTGTAAAGGACAAT
AATGTGCTGAAGCCACTGCTCGGTGTGCTCGTAGATTCTCATCACTCTTTTCCGTACGGCTACTA
ACGCAGGGCGAGCGAAAGGATACGAAGTGGAACATCGAGATGCTG
Found at i:556495 original size:43 final size:43
Alignment explanation
Indices: 556415--556499 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
556405 ATTAGTACTC
* *
556415 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
*
556458 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
556500 TTTGATGGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 4 0.11
43 34 0.89
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
Left flanking sequence: Indices 555915 -- 556414
AGACCGACGTTCCGCCCAGCACTACGCTGGTCTGGTATACTGGGCAAGGCTGCTGCGGCCGGCGG
AGGCGGGAATAGTTTAGTTTTCTATACAAGAAAAAAGGGGGCCTCCTTCACTCTAATGGCGGAAA
CGTCAGAGCGCATGAGAGACGGAAGAGATGAAGTAGACCCCACCCAGTTGACAGTTTACCCCGTC
CTATTGACTCCTTCGTGCTTTTCGTCGGCCACTCATTCTCATGCCGTACCATACATTAGACGAGA
CGTCGGTTTCCCCAACGTCATGTCACGTCAAGAGCAAAGCCCCCAGCTTGACGAGCAAAGCCCAA
AAAGCACTCGCAAAGCGTAGGGCTTTGCTCATTTTAAGAAGCGAGTATGCTTTAGGGAAGTATGA
GCTAATTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 556500 -- 556999
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
Found at i:556625 original size:16 final size:16
Alignment explanation
Indices: 556604--556634 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
556594 TGATTCTTCT
556604 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
556620 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
556635 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 556104 -- 556603
CCCGTCCTATTGACTCCTTCGTGCTTTTCGTCGGCCACTCATTCTCATGCCGTACCATACATTAG
ACGAGACGTCGGTTTCCCCAACGTCATGTCACGTCAAGAGCAAAGCCCCCAGCTTGACGAGCAAA
GCCCAAAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATTTTAAGAAGCGAGTATGCTTTAGGGAA
GTATGAGCTAATTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 556635 -- 557134
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAA
GACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAG
Found at i:556744 original size:43 final size:42
Alignment explanation
Indices: 556681--557022 Score: 294
Period size: 43 Copynumber: 8.2 Consensus size: 42
556671 TTGTATGTCA
* * * *
556681 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* * *
556724 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * *
556762 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
556800 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** * ***
556843 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * * *
556884 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
556927 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ***
556970 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
557013 TCAGGACTGA
1 TCAGGACTGA
557023 TTCTTCTTGA
Statistics
Matches: 240, Mismatches: 42, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
33 11 0.05
35 1 0.00
37 5 0.02
38 19 0.08
39 5 0.02
41 27 0.11
42 12 0.05
43 157 0.65
44 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 556181 -- 556680
TTTCCCCAACGTCATGTCACGTCAAGAGCAAAGCCCCCAGCTTGACGAGCAAAGCCCAAAAAGCA
CTCGCAAAGCGTAGGGCTTTGCTCATTTTAAGAAGCGAGTATGCTTTAGGGAAGTATGAGCTAAT
TCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 557023 -- 557522
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTC
AAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Found at i:556829 original size:76 final size:80
Alignment explanation
Indices: 556702--557030 Score: 262
Period size: 84 Copynumber: 4.0 Consensus size: 80
556692 CTTATCAAAA
* *
556702 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGTCTTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
556764 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
*
556779 -GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
556843 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * *
556861 GAAAGGTCAAGACTGTC-TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTAT-TTCA
1 ---AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC--TATCTTGA
* **
556924 AGGTCAGGACTGA-CCTTACCAAAA
61 A-GTCAGGACTGATTCTT--C--TT
** * *** *
556948 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAG
1 AGGTCAAGACTGTCTTTCAA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTATCTTG-AA-
557012 GTCAGGACTGATTCTTCTT
62 GTCAGGACTGATTCTTCTT
557031 GAAAGGTCAG
Statistics
Matches: 201, Mismatches: 28, Indels: 40
0.75 0.10 0.15
Matches are distributed among these distances:
75 1 0.00
76 51 0.25
77 2 0.01
79 1 0.00
81 15 0.07
82 1 0.00
83 2 0.01
84 60 0.30
85 12 0.06
86 50 0.25
87 6 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (80 bp):
AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 556202 -- 556701
TCAAGAGCAAAGCCCCCAGCTTGACGAGCAAAGCCCAAAAAGCACTCGCAAAGCGTAGGGCTTTG
CTCATTTTAAGAAGCGAGTATGCTTTAGGGAAGTATGAGCTAATTCAGACCAATGGAAGCACTTT
TGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 557031 -- 557530
GAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAG
Found at i:556843 original size:19 final size:19
Alignment explanation
Indices: 556819--557021 Score: 97
Period size: 19 Copynumber: 9.7 Consensus size: 19
556809 ACCTTACCAA
556819 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
556838 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
556862 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
556881 AAA--TC-AGTACTGACCTTATCAA
1 AAAGGTCAAG-ACTG-TC-T-T--G
* *
556903 AAAGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
556922 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
556946 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
556965 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
556989 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
557008 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
557022 ATTCTTCTTG
Statistics
Matches: 141, Mismatches: 19, Indels: 48
0.68 0.09 0.23
Matches are distributed among these distances:
16 2 0.01
17 6 0.04
18 1 0.01
19 65 0.46
20 3 0.02
21 1 0.01
22 4 0.03
23 3 0.02
24 54 0.38
25 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 556319 -- 556818
ATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 557022 -- 557521
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATAC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Found at i:556946 original size:127 final size:127
Alignment explanation
Indices: 556779--557010 Score: 430
Period size: 127 Copynumber: 1.8 Consensus size: 127
556769 TGATTCTTCT
*
556779 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
*
556844 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
556906 GGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
556970 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
65 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
557011 GGTCAGGACT
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
126 1 0.01
127 101 0.99
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (127 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Left flanking sequence: Indices 556279 -- 556778
AGCGAGTATGCTTTAGGGAAGTATGAGCTAATTCAGACCAATGGAAGCACTTTTGACGATTTCCT
GAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 557011 -- 557510
GGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTG
TCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
CCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCA
ATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
Found at i:556989 original size:24 final size:24
Alignment explanation
Indices: 556960--557044 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
556950 GTCAAGACTG
556960 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
556984 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
557003 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
557027 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
557045 CATTATGGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.33
24 36 0.67
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 556460 -- 556959
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 557045 -- 557544
CATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
Found at i:557234 original size:43 final size:42
Alignment explanation
Indices: 557171--557510 Score: 238
Period size: 43 Copynumber: 8.2 Consensus size: 42
557161 TTGTATGTCA
* * * *
557171 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
557214 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * * *
557252 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
*
557290 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
557333 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * * * *
557374 TCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
*
557417 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
557460 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
557503 TCAGGACT
1 TCAGGACT
557511 GATTCTTCTT
Statistics
Matches: 230, Mismatches: 48, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
33 10 0.04
35 1 0.00
37 5 0.02
38 16 0.07
39 6 0.03
40 3 0.01
41 23 0.10
42 12 0.05
43 148 0.64
44 6 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 556671 -- 557170
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCA
GGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 557511 -- 558010
GATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCA
GGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGAC
AACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGT
ACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAA
GATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTC
ACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
Found at i:557319 original size:76 final size:79
Alignment explanation
Indices: 557192--557520 Score: 240
Period size: 84 Copynumber: 4.0 Consensus size: 79
557182 CTTATCAAAA
* *
557192 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGT-TTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
557254 AGGACTGATTCTTC-T
64 AGGACTGATTCTTCTT
*
557269 -GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGT-TTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
557333 TCAGGACTGATTCTTCTT
62 TCAGGACTGATTCTTCTT
* * * * * * * *
557351 GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAG
1 ---AGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TTGAA-
* **
557416 GTCAGGACTGA-CCTTACCAAAA
61 GTCAGGACTGATTCTT--C--TT
** * *** *
557438 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAG
1 AGGTCAAGACTGT-TTTCAA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTATCTTG-AA-
557502 GTCAGGACTGATTCTTCTT
61 GTCAGGACTGATTCTTCTT
557521 GAAAGGTCAG
Statistics
Matches: 202, Mismatches: 29, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
75 1 0.00
76 50 0.25
77 2 0.01
79 1 0.00
81 16 0.08
82 1 0.00
83 3 0.01
84 60 0.30
85 12 0.06
86 50 0.25
87 6 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (79 bp):
AGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCAG
GACTGATTCTTCTT
Left flanking sequence: Indices 556692 -- 557191
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGA
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 557521 -- 558020
GAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGC
CATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATA
TGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAA
AAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
Found at i:557323 original size:490 final size:489
Alignment explanation
Indices: 556654--557583 Score: 1788
Period size: 490 Copynumber: 1.9 Consensus size: 489
556644 GATTGAGGAA
556654 TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
1 TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
556719 CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
66 CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
*
556784 AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
131 AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
*
556849 CTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGA
196 CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGA
556914 CTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
261 CTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
556979 ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGAC
326 ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGAC
* *
557044 TCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATC
391 TCATTATGGAAAAGTCAGGAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCATTTGTATGTCATC
557109 AGTACTCACCATACCAAACAGGTCAGGACTCACC
456 AGTACTCACCATACCAAACAGGTCAGGACTCACC
557143 TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
1 TGACCAT-CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
557208 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
65 TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
557273 AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
130 AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
*
557338 ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAT
195 ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAG
*
557403 ACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
260 ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
557468 GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGA
325 GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGA
*
557533 CTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACT
390 CTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTCTTGAAAGGTCAAGACT
557584 GTCTTGAAAG
Statistics
Matches: 433, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
489 7 0.02
490 426 0.98
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (489 bp):
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGA
CTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGAC
TCATTATGGAAAAGTCAGGAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAACAGGTCAGGACTCACC
Left flanking sequence: Indices 556154 -- 556653
CGTACCATACATTAGACGAGACGTCGGTTTCCCCAACGTCATGTCACGTCAAGAGCAAAGCCCCC
AGCTTGACGAGCAAAGCCCAAAAAGCACTCGCAAAGCGTAGGGCTTTGCTCATTTTAAGAAGCGA
GTATGCTTTAGGGAAGTATGAGCTAATTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATG
TTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
Right flanking sequence: Indices 557584 -- 558083
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCAT
TGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAAT
GCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCA
TATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAA
GGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
AAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
Found at i:557333 original size:19 final size:19
Alignment explanation
Indices: 557309--557511 Score: 97
Period size: 19 Copynumber: 9.7 Consensus size: 19
557299 ACCTTACCAA
557309 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
557328 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
557352 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
557371 AAA--TC-AGTACTGACCTTATCAA
1 AAAGGTCAAG-ACTG-TC-T-T--G
* *
557393 AAAGGTCAATACTGTCTTT
1 AAAGGTCAAGACTGTCTTG
* * * *
557412 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
557436 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
557455 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
557479 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
557498 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
557512 ATTCTTCTTG
Statistics
Matches: 141, Mismatches: 19, Indels: 48
0.68 0.09 0.23
Matches are distributed among these distances:
16 2 0.01
17 6 0.04
18 1 0.01
19 64 0.45
20 4 0.03
21 1 0.01
22 4 0.03
23 4 0.03
24 54 0.38
25 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 556809 -- 557308
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTG
AGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCA
GGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 557512 -- 558011
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAG
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
ACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTA
CTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAG
ATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
Found at i:557495 original size:127 final size:127
Alignment explanation
Indices: 557269--557500 Score: 430
Period size: 127 Copynumber: 1.8 Consensus size: 127
557259 TGATTCTTCT
557269 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
557334 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
* *
557396 GGTCAATACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
557460 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
65 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
557501 GGTCAGGACT
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
126 1 0.01
127 101 0.99
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (127 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Left flanking sequence: Indices 556769 -- 557268
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 557501 -- 558000
GGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTC
TTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTT
TGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCT
CTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAA
TGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACC
ATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
Found at i:557511 original size:43 final size:43
Alignment explanation
Indices: 557309--557645 Score: 353
Period size: 43 Copynumber: 7.7 Consensus size: 43
557299 ACCTTACCAA
557309 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * **
557352 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TG
* ** * ***
557393 AAAGGTCAATACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
557436 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
557479 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * *
557522 AAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTCAGGACTCTT-TTG
1 AAAGGTCAAGACT-GTCT-T-GAAAGGTCAGG-A---C-TGATTCTTCTTG
*
557571 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * *
557614 AAAGGTCAGGACTCTTTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
557646 CATTGCAATT
Statistics
Matches: 247, Mismatches: 32, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
40 4 0.02
41 28 0.11
42 5 0.02
43 158 0.64
44 5 0.02
45 10 0.04
46 2 0.01
47 10 0.04
48 2 0.01
49 17 0.07
50 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 556809 -- 557308
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTG
AGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCA
GGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 557646 -- 558145
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
Found at i:557577 original size:19 final size:19
Alignment explanation
Indices: 557553--557646 Score: 116
Period size: 19 Copynumber: 4.7 Consensus size: 19
557543 AAAAGTCAGG
557553 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
* * *
557572 AAGGTCAAGACTGTCTTGA
1 AAGGTCAGGACTCTTTTGA
557591 AAGGTCAGGACTCATTCTTCTTGA
1 AAGGTCAGGA--C--TCTT-TTGA
557615 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
557634 AAGGTCAGGACTC
1 AAGGTCAGGACTC
557647 ATTGCAATTG
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
19 42 0.66
20 4 0.06
21 1 0.02
22 1 0.02
23 2 0.03
24 14 0.22
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (19 bp):
AAGGTCAGGACTCTTTTGA
Left flanking sequence: Indices 557053 -- 557552
AAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 557647 -- 558146
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTA
CCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
Found at i:557589 original size:92 final size:91
Alignment explanation
Indices: 557471--557643 Score: 294
Period size: 92 Copynumber: 1.9 Consensus size: 91
557461 CAGGACTGAT
*
557471 TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTC
1 TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
557536 ATTATGGAAAAGTCAGGAAGGTCAGGAC
66 -TT-TGGAAAAGTCAGGAAGGTCAGGAC
557564 TCTT-TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
1 TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
* *
557628 TTTTGAAAGGTCAGGA
66 TTTGGAAAAGTCAGGA
557644 CTCATTGCAA
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
90 12 0.16
91 2 0.03
92 59 0.77
93 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (91 bp):
TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
TTTGGAAAAGTCAGGAAGGTCAGGAC
Left flanking sequence: Indices 556971 -- 557470
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAA
GACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
Right flanking sequence: Indices 557644 -- 558143
CTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAC
AAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGAT
GGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
TTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
Found at i:557737 original size:20 final size:20
Alignment explanation
Indices: 557712--557793 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
557702 TGACAACAAA
557712 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
557732 ATGCCATTAGTACTAACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
557760 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
557780 ATGCCATTAGTACT
1 ATGCCATTAGTACT
557794 CACTGTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 557212 -- 557711
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTG
TCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCA
TTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 557794 -- 558293
CACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACT
CTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
Found at i:557828 original size:48 final size:48
Alignment explanation
Indices: 557710--557821 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
557700 CTTGACAACA
*
557710 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
*
557758 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
* *
557806 CAATGTCATTAGTACT
1 AAATGCCATTAGTACT
557822 CACCATACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (48 bp):
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTACAAAC
Left flanking sequence: Indices 557210 -- 557709
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
Right flanking sequence: Indices 557822 -- 558321
CACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
Found at i:558029 original size:43 final size:42
Alignment explanation
Indices: 557965--558134 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
557955 TTGTATGTCA
* * *
557965 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
558008 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
558046 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
558084 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
558127 TCAGGACT
1 TCAGGACT
558135 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 557465 -- 557964
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
GGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTAC
TTTCCATATGCCATTAGTACTAACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 558135 -- 558634
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTT
TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGAC
TCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Found at i:558113 original size:76 final size:78
Alignment explanation
Indices: 557987--558400 Score: 277
Period size: 76 Copynumber: 5.0 Consensus size: 78
557977 TTATCAAAAA
* * * *
557987 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
558050 GACTGATTCTTCT
66 GACTGATTCTTCT
*
558063 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
558128 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * * *
558145 GGACAGGACCAATTGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
1 GGTCAAGA-C---TG-TATT-TCA---CAGTCAGGACTAACCTTACC---AA---AAAGGTCAAG
* * *
558208 ACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
51 ACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * * *
558242 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
558305 GACTGATTCTTCT
66 GACTGATTCTTCT
*
558318 GGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
558383 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
558399 GG
1 GG
558401 AAAGGTCAAG
Statistics
Matches: 260, Mismatches: 41, Indels: 69
0.70 0.11 0.19
Matches are distributed among these distances:
76 102 0.39
77 4 0.02
79 4 0.02
80 4 0.02
81 38 0.15
82 6 0.02
83 3 0.01
84 14 0.05
86 2 0.01
87 6 0.02
88 1 0.00
89 14 0.05
90 15 0.06
91 1 0.00
92 5 0.02
93 9 0.03
95 22 0.08
96 3 0.01
97 7 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 557487 -- 557986
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAA
CAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTA
ACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGT
CATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 558401 -- 558900
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAA
GGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTT
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTC
TTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGAC
AATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATG
Found at i:558244 original size:41 final size:43
Alignment explanation
Indices: 558198--558432 Score: 142
Period size: 43 Copynumber: 5.7 Consensus size: 43
558188 CCAAAAATGG
* * * *
558198 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
558239 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
558282 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
558317 --TGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* ** ***
558358 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
*
558401 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
558433 CATTCTTCTG
Statistics
Matches: 151, Mismatches: 27, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
33 9 0.06
35 1 0.01
37 6 0.04
38 16 0.11
39 6 0.04
41 17 0.11
42 9 0.06
43 83 0.55
44 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 557698 -- 558197
CACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTAACTGTGCAAACAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCAT
ACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 558433 -- 558932
CATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGG
ACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACT
GTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAG
Found at i:558382 original size:19 final size:19
Alignment explanation
Indices: 558358--558432 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
558348 ACCTTACCAA
558358 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
558377 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
558401 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
558420 AAAGGTCAGGACT
1 AAAGGTCAAGACT
558433 CATTCTTCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 557858 -- 558357
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 558433 -- 558932
CATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGG
ACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACT
GTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAG
Found at i:558403 original size:24 final size:24
Alignment explanation
Indices: 558376--558456 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
558366 AGACTGTCTT
558376 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
558400 GAAAGGTCAAGACTG--TC-T-T-
1 GAAAGGTCAGGACTGATTCTTCTG
*
558419 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
558443 GAAAGGTGAGGACT
1 GAAAGGTCAGGACT
558457 CTTTTGAAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
19 13 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 27 0.56
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 557876 -- 558375
AATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 558457 -- 558956
CTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAG
GACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
AACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGG
ACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACT
CACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTC
Found at i:558405 original size:43 final size:43
Alignment explanation
Indices: 558358--558476 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
558348 ACCTTACCAA
*
558358 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
558401 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
* * * *
558444 AAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
558477 TGAAAGGTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 557858 -- 558357
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 558477 -- 558976
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCA
GAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCA
GGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
Found at i:558457 original size:24 final size:24
Alignment explanation
Indices: 558376--558476 Score: 96
Period size: 19 Copynumber: 4.6 Consensus size: 24
558366 AGACTGTCTT
*
558376 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTCATTCTTCTG
* *
558400 GAAAGGTCAAGACT--GTC-T-T-
1 GAAAGGTCAGGACTCATTCTTCTG
558419 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTCATTCTTCTG
*
558443 GAAAGGTGAGGACTC--T-TT-T-
1 GAAAGGTCAGGACTCATTCTTCTG
558462 GAAAGGTCAGGACTC
1 GAAAGGTCAGGACTC
558477 TGAAAGGTCA
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
19 27 0.41
20 2 0.03
21 5 0.08
22 4 0.06
23 1 0.02
24 27 0.41
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (24 bp):
GAAAGGTCAGGACTCATTCTTCTG
Left flanking sequence: Indices 557876 -- 558375
AATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 558477 -- 558976
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCA
GAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCA
GGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
Found at i:558482 original size:16 final size:16
Alignment explanation
Indices: 558461--558491 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
558451 AGGACTCTTT
558461 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
558477 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
558492 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 557961 -- 558460
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTT
Right flanking sequence: Indices 558492 -- 558991
AATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTA
CTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
Found at i:558551 original size:16 final size:16
Alignment explanation
Indices: 558530--558560 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
558520 AGGACTCTTT
558530 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
558546 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
558561 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 558030 -- 558529
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGT
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTT
Right flanking sequence: Indices 558561 -- 559060
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTA
TGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCA
CTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGG
Found at i:558562 original size:69 final size:69
Alignment explanation
Indices: 558451--558579 Score: 258
Period size: 69 Copynumber: 1.9 Consensus size: 69
558441 TGGAAAGGTG
558451 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
1 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
558516 ATAC
66 ATAC
558520 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
1 AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
558580 AAGTCAGAAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (69 bp):
AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATAC
Left flanking sequence: Indices 557951 -- 558450
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTG
Right flanking sequence: Indices 558580 -- 559079
AAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCAT
TAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACC
AAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGT
Found at i:558627 original size:43 final size:42
Alignment explanation
Indices: 558579--558676 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
558569 TGATTGAGGA
* * *
558579 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
558622 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
558664 AAAGATCAGAACT
1 AAAG-TCAGAACT
558677 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 558079 -- 558578
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 558677 -- 559176
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAAT
GTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACT
GTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACTG
Found at i:558755 original size:28 final size:28
Alignment explanation
Indices: 558732--558914 Score: 212
Period size: 28 Copynumber: 6.6 Consensus size: 28
558722 TGACAATTGT
*
558732 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
558760 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
558788 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
558816 TTG-TA-T-GTCTCTCACTTGACAAACAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
*
558842 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* **
558870 ATGTCATTAGTACTCAC-TGTACAAACCA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
*
558898 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
558915 CATACCAAAA
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
25 2 0.01
26 17 0.12
27 4 0.03
28 113 0.82
29 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 558232 -- 558731
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 558915 -- 559414
CATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGAC
TGATTCTTCTTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
Found at i:558931 original size:28 final size:28
Alignment explanation
Indices: 558846--558931 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
558836 AAACAAATGC
* *
558846 CATTAGTACTCA-CTTGAC-AAACAAATGT
1 CATTAGTACTCACCAT-ACAAAAC-AAGGT
** * *
558874 CATTAGTACTCACTGTACAAACCAATGT
1 CATTAGTACTCACCATACAAAACAAGGT
558902 CATTAGTACTCACCATACCAAAAC-AGGT
1 CATTAGTACTCACCATA-CAAAACAAGGT
558930 CA
1 CA
558932 GGACTGTCTG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 39 0.81
29 9 0.19
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (28 bp):
CATTAGTACTCACCATACAAAACAAGGT
Left flanking sequence: Indices 558346 -- 558845
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAG
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATC
AGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
Right flanking sequence: Indices 558932 -- 559431
GGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACTGATTCTTCTTGAAAGG
TCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCA
Found at i:558950 original size:19 final size:17
Alignment explanation
Indices: 558926--558971 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
558916 ATACCAAAAC
558926 AGGTCAGGACTGTCTGGAA
1 AGGTCAGGACT-TCT-GAA
*
558945 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
558961 AGGTCAGGACT
1 AGGTCAGGACT
558972 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 558426 -- 558925
CAGGACTCATTCTTCTGGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 558972 -- 559471
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
ATAAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
Found at i:559102 original size:64 final size:64
Alignment explanation
Indices: 558997--559132 Score: 202
Period size: 64 Copynumber: 2.1 Consensus size: 64
558987 GGAATGACCA
* *
558997 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGT-TTTGAAAGG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAA-G
* * *
559061 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAG
*
559125 TCAGGACT
1 TCAAGACT
559133 AACCTTACCA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 59 0.91
65 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 558497 -- 558996
GAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTAT
GTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCAC
TGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 559133 -- 559632
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACTGATTCTTCTTGAAAGGTCAATA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAA
AATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCC
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Found at i:559147 original size:43 final size:42
Alignment explanation
Indices: 559082--559464 Score: 268
Period size: 43 Copynumber: 9.2 Consensus size: 42
559072 TTGTATGTCA
* * *
559082 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
559125 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* ** *** * * *
559167 ATAAGGACTGATTCTT-CTTGAAAGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
559211 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
559254 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * *
559295 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
559338 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
559376 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
559414 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
559457 TCAGGACT
1 TCAGGACT
559465 TTTGATGGAA
Statistics
Matches: 257, Mismatches: 63, Indels: 40
0.71 0.17 0.11
Matches are distributed among these distances:
33 10 0.04
35 1 0.00
37 6 0.02
38 16 0.06
39 6 0.02
41 28 0.11
42 22 0.09
43 159 0.62
44 9 0.04
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 558582 -- 559081
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTA
GTACTCACCATACCAAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 559465 -- 559964
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Found at i:559213 original size:86 final size:84
Alignment explanation
Indices: 559101--559331 Score: 318
Period size: 86 Copynumber: 2.7 Consensus size: 84
559091 ACCTTATCAA
* * *
559101 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
1 AAAGGTCAAGACTGT-TTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
559166 GATAAGGACTGATTCTTCTTG
64 GATAAGGACTGATTCTTCTTG
*
559187 AAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGT-TTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
* * *
559252 GGTCAGGACTGATTTTTCTTG
64 GATAAGGACTGATTCTTCTTG
* * * * *
559273 AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTT
1 AAAGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
559332 TCAAAGTCAG
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
84 36 0.28
85 4 0.03
86 90 0.69
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (84 bp):
AAAGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGA
TAAGGACTGATTCTTCTTG
Left flanking sequence: Indices 558601 -- 559100
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAC
AGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 559332 -- 559831
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
Found at i:559254 original size:19 final size:19
Alignment explanation
Indices: 559230--559294 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
559220 ACCTTACCAA
559230 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
559249 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
559273 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
559292 AAA
1 AAA
559295 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 558730 -- 559229
GTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAA
CAGGTCAGGACTGTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACTGATTCTTCT
TGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 559295 -- 559794
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
Found at i:559674 original size:43 final size:42
Alignment explanation
Indices: 559611--559780 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
559601 TTGTATGTCA
* * *
559611 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
559654 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
559692 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
559730 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
559773 TCAGGACT
1 TCAGGACT
559781 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 559111 -- 559610
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACT
GATTCTTCTTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 559781 -- 560280
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
Found at i:559726 original size:76 final size:78
Alignment explanation
Indices: 559633--560044 Score: 280
Period size: 76 Copynumber: 5.0 Consensus size: 78
559623 TTATCAAAAA
* *
559633 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
559696 GACTGATTCTTCT
66 GACTGATTCTTCT
* * *
559709 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
* * ***
559774 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
559791 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACCAAAAA--G--A--TCAAGA
* * *
559855 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
559888 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
559951 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
559964 GGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
560029 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
560045 TGAAAGGTCA
Statistics
Matches: 257, Mismatches: 44, Indels: 65
0.70 0.12 0.18
Matches are distributed among these distances:
76 103 0.40
77 4 0.02
79 4 0.02
80 4 0.02
81 41 0.16
82 7 0.03
83 2 0.01
84 10 0.04
85 1 0.00
86 2 0.01
88 1 0.00
89 18 0.07
90 18 0.07
91 1 0.00
93 8 0.03
94 1 0.00
95 17 0.07
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 559133 -- 559632
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATAAGGACTGATTCTTCTTGAAAGGTCAATA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAA
AATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCC
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 560045 -- 560544
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
Found at i:559890 original size:41 final size:43
Alignment explanation
Indices: 559844--560078 Score: 151
Period size: 43 Copynumber: 5.7 Consensus size: 43
559834 CCAAAAATGG
* * * *
559844 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
559885 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
559928 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * *
559963 --TGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* ** ***
560004 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
*
560047 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
560079 CATTCTTCTT
Statistics
Matches: 152, Mismatches: 26, Indels: 30
0.73 0.12 0.14
Matches are distributed among these distances:
33 9 0.06
35 1 0.01
37 6 0.04
38 16 0.11
39 6 0.04
41 17 0.11
42 10 0.07
43 83 0.55
44 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 559344 -- 559843
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 560079 -- 560578
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAAT
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCA
Found at i:560028 original size:19 final size:19
Alignment explanation
Indices: 560004--560078 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
559994 ACCTTACCAA
560004 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
560023 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
560047 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
560066 AAAGGTCAGGACT
1 AAAGGTCAAGACT
560079 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 30 0.62
24 18 0.38
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 559504 -- 560003
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 560079 -- 560578
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAAT
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCA
Found at i:560047 original size:24 final size:24
Alignment explanation
Indices: 560018--560106 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
560008 GTCAAGACTG
560018 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
560042 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
560061 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
560085 TCTTGAAAGGTCAGGACTGATT
1 TCTTGAAAGGTCAGGACTGATT
560107 ATGGAAGGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 17 0.30
24 39 0.70
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 559518 -- 560017
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 560107 -- 560606
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
Found at i:560051 original size:43 final size:43
Alignment explanation
Indices: 560004--560103 Score: 182
Period size: 43 Copynumber: 2.3 Consensus size: 43
559994 ACCTTACCAA
*
560004 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
560047 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
*
560090 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
560104 ATTATGGAAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 559504 -- 560003
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 560104 -- 560603
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTT
GATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
Found at i:560230 original size:43 final size:43
Alignment explanation
Indices: 560150--560274 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
560140 ATTAGTACTC
* * * *
560150 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
560193 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
560236 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
560275 AATGAGAATG
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.06
43 48 0.67
44 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 559650 -- 560149
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 560275 -- 560774
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:560265 original size:16 final size:16
Alignment explanation
Indices: 560244--560274 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
560234 TGATTCTTCT
560244 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
560260 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
560275 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 559744 -- 560243
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 560275 -- 560774
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:560647 original size:43 final size:41
Alignment explanation
Indices: 560554--560745 Score: 141
Period size: 43 Copynumber: 4.7 Consensus size: 41
560544 CCAAAAATGG
* * * *
560554 AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAA
560595 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCAAA-TCAGGACTAACCTTACCAA
* * * **
560638 AAAGATCAAGACTATC-T--GATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTCAAATCAGGACT-AACCTTACCAA
* * *
560673 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCAA-ATCAGGACTAACCTTACCAA
*
560714 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTCAAA--TCAGGACT
560746 GATTCTTCTG
Statistics
Matches: 115, Mismatches: 20, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
33 11 0.10
35 1 0.01
37 4 0.03
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.44
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (41 bp):
AAAGGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAA
Left flanking sequence: Indices 560054 -- 560553
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 560746 -- 561245
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
GGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAA
Found at i:560696 original size:19 final size:19
Alignment explanation
Indices: 560674--560784 Score: 64
Period size: 19 Copynumber: 5.6 Consensus size: 19
560664 TGATTCTTCT
*
560674 GGTCAAGACTGTCTTTCAA
1 GGTCAAGACTGTCTTGCAA
* * *
560693 GGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTG-TCTT-GC---AA
*
560717 GGTCAAGACTGTCTTGAAA
1 GGTCAAGACTGTCTTGCAA
* *
560736 GGTCAGGACTGATTCTT-C-T
1 GGTCAAGACTG--TCTTGCAA
*
560755 GGTCAAGACTGTCTTGAAA
1 GGTCAAGACTGTCTTGCAA
*
560774 GGTCAGGACTG
1 GGTCAAGACTG
560785 ATTATGGAAG
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
17 4 0.06
19 42 0.61
20 3 0.04
21 5 0.07
23 3 0.04
24 12 0.17
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (19 bp):
GGTCAAGACTGTCTTGCAA
Left flanking sequence: Indices 560174 -- 560673
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 560785 -- 561284
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
Found at i:560699 original size:38 final size:38
Alignment explanation
Indices: 560657--560787 Score: 165
Period size: 38 Copynumber: 3.3 Consensus size: 38
560647 GACTATCTGA
**
560657 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
560695 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
560738 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
560776 TCAGGACTGATT
1 TCAGGACTGATT
560788 ATGGAAGGAC
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 29 0.36
44 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 560157 -- 560656
CAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 560788 -- 561287
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
Found at i:560708 original size:76 final size:79
Alignment explanation
Indices: 560598--560785 Score: 283
Period size: 76 Copynumber: 2.4 Consensus size: 79
560588 TTATCAAAAA
* *
560598 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
560660 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* *
560674 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
560739 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
**
560755 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGA
560786 TTATGGAAGG
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
76 52 0.51
77 2 0.02
79 1 0.01
81 46 0.46
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 560098 -- 560597
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 560786 -- 561285
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
Found at i:560925 original size:43 final size:42
Alignment explanation
Indices: 560862--561031 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
560852 TTGTATGTCA
* * * *
560862 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
560905 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
560943 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
560981 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
561024 TCAGGACT
1 TCAGGACT
561032 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 560362 -- 560861
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 561032 -- 561531
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
Found at i:561118 original size:19 final size:19
Alignment explanation
Indices: 561094--561170 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
561084 ACCAAAAATG
*
561094 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTCTCTT
*
561113 GAAAGGTCAGGACTCATTCTTCT
1 GAAAGGTCAAGACTC--TC-T-T
* *
561136 GGAAAGGTCAGGACTCTTTT
1 -GAAAGGTCAAGACTCTCTT
561156 GAAAGGTCAAGACTC
1 GAAAGGTCAAGACTC
561171 ATTTGTATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 2 0.04
23 1 0.02
24 15 0.31
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (19 bp):
GAAAGGTCAAGACTCTCTT
Left flanking sequence: Indices 560594 -- 561093
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 561171 -- 561670
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
TTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAG
Found at i:561140 original size:24 final size:21
Alignment explanation
Indices: 561111--561174 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 21
561101 CAAGACTGTC
561111 TTGAAAGGTCAGGACTCATTCT
1 TTGAAAGGTCAGGACTCATT-T
561133 TCTGGAAAGGTCAGGACTC--TT
1 T-T-GAAAGGTCAGGACTCATTT
*
561154 TTGAAAGGTCAAGACTCATTT
1 TTGAAAGGTCAGGACTCATTT
561175 GTATGTCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
21 4 0.11
22 2 0.05
23 1 0.03
24 15 0.41
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (21 bp):
TTGAAAGGTCAGGACTCATTT
Left flanking sequence: Indices 560611 -- 561110
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Right flanking sequence: Indices 561175 -- 561674
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCA
Found at i:561158 original size:43 final size:43
Alignment explanation
Indices: 561092--561173 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
561082 TGACCAAAAA
* *
561092 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
* *
561135 TGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATT
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATT
561174 TGTATGTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
Left flanking sequence: Indices 560592 -- 561091
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Right flanking sequence: Indices 561174 -- 561673
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
TTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
Found at i:561248 original size:43 final size:43
Alignment explanation
Indices: 561183--561741 Score: 199
Period size: 43 Copynumber: 13.2 Consensus size: 43
561173 TTGTATGTCA
* * * *
561183 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
561226 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * *
561264 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
561302 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
561345 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
* ** * * * * * *
561388 TCAGGACT---TTTGATGGAAGGACAGGACCAATTGCAATTGT-ATGC-CA-
1 TCAGGACTAACCTT-A-CCAA--AAAGG-TCAA--G--ACTGTCTTTCAAAG
* * * * *
561434 TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACC---AA---AAAGGTCAAGACTGTCTTTCAAA-G
* ** * *** *
561483 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
561524 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
561567 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * * *
561609 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAGG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
561648 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
** *** *
561691 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
561734 TCAGGACT
1 TCAGGACT
561742 GATTATGGAA
Statistics
Matches: 381, Mismatches: 88, Indels: 94
0.68 0.16 0.17
Matches are distributed among these distances:
33 10 0.03
35 1 0.00
37 8 0.02
38 34 0.09
39 12 0.03
40 2 0.01
41 29 0.08
42 23 0.06
43 206 0.54
44 11 0.03
45 3 0.01
46 11 0.03
47 2 0.01
48 3 0.01
49 15 0.04
50 5 0.01
51 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 560683 -- 561182
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 561742 -- 562241
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
Found at i:561304 original size:19 final size:19
Alignment explanation
Indices: 561282--561352 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
561272 GATTCTTCTG
561282 GTCAAGACTGTATTTCAAA
1 GTCAAGACTGTATTTCAAA
*
561301 GTCAGGACTG-ACCTTATCAAAAA
1 GTCAAGACTGTA--TT-TC--AAA
*
561324 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTATTTCAAA
*
561344 GTCAGGACT
1 GTCAAGACT
561353 AACCTTACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
18 1 0.02
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTATTTCAAA
Left flanking sequence: Indices 560782 -- 561281
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTC
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 561353 -- 561852
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
Found at i:561333 original size:24 final size:24
Alignment explanation
Indices: 561301--561377 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
561291 GTATTTCAAA
*
561301 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
561325 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
561344 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
561368 GTCAAGACTG
1 GTCAAGACTG
561378 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 560801 -- 561300
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA
Right flanking sequence: Indices 561378 -- 561877
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
Found at i:561462 original size:321 final size:318
Alignment explanation
Indices: 560842--561799 Score: 984
Period size: 321 Copynumber: 2.9 Consensus size: 318
560832 CCTGACCATA
560842 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
560907 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
* * * *
560972 CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT-TTTG
131 ATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTACTT-
* * * * *** ** * * * *** ** * *
561036 A-TGGAAGGACAGGAC-CAATTGCAATTGT-ATG-CCATTA-GTACTCACCTGACCAAAAATGGA
195 ACAGAAAGGTCAAGACTGTCTTG-AAAGGTCAGGACTATTATGGAAGGACAGGACC--AATTGCA
** * ** * * * * **** * *
561096 AAGGTCAAGACTGTCTTGAAAGGTCA--GGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAA
257 ATTGT-ATG-CCAT-TAG-TA-CTCACCTGAC-CA-TAAAATGGAAAGGTCAAGACTCTCTTGAA
561159 AGGT
315 AGGT
*
561163 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
561228 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
* *
561293 ATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAACC
131 ATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT-A-C
* *
561357 TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
193 TTA-CAGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATT-ATGGAAGGACAGGACCAATTGC
*
561422 AATTGTATGCCATTAGTACTCACCTGACCA-AAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
256 AATTGTATGCCATTAGTACTCACCTGACCATAAAATGGAAAGGTCAAGACTCTCTTGAAAGGT
* * *
561484 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
1 CAAGACTCA----T-TT-----GT----A-TGTC-----ATCAGTACTCACCTTATCAAAAAGGT
561549 CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAG
46 CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T----GATCAG
*
561614 GACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
106 GACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
*
561679 TGTCTTGAAAGGTCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
171 TGTCTTGAAAGGTCAGGACT-A--CTTAC-AGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-
561743 ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
231 ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
561800 CAAGACTCAT
Statistics
Matches: 538, Mismatches: 56, Indels: 60
0.82 0.09 0.09
Matches are distributed among these distances:
321 210 0.39
322 8 0.01
323 4 0.01
324 7 0.01
325 16 0.03
326 9 0.02
327 11 0.02
328 1 0.00
329 8 0.01
331 2 0.00
335 1 0.00
336 4 0.01
341 77 0.14
342 1 0.00
345 6 0.01
346 167 0.31
347 6 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (318 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTACTTA
CAGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCATAAAATGGAAAGGTCAAGACTCTCTTGAAAGGT
Left flanking sequence: Indices 560342 -- 560841
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAATACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
Right flanking sequence: Indices 561800 -- 562299
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACC
Done.