Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 17 of 20
Found at i:503441 original size:157 final size:157
Alignment explanation
Indices: 503212--503500 Score: 524
Period size: 157 Copynumber: 1.8 Consensus size: 157
503202 TGTGAAAGAC
*
503212 AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
*
503277 CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
66 CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCT
503342 TTCAAGAAGAATCAGTCCTGATCAGAT
131 TTCAAGAAGAATCAGTCCTGATCAGAT
* * *
503369 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
*
503434 CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
66 CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCT
503499 TT
131 TT
503501 TTGATAAGGT
Statistics
Matches: 126, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 126 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (157 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGATCAGAT
Left flanking sequence: Indices 502712 -- 503211
TGTTTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGTCAGCGT
ACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTT
TGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAA
TGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTT
CATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
Right flanking sequence: Indices 503501 -- 504000
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
Found at i:503520 original size:157 final size:158
Alignment explanation
Indices: 503164--503520 Score: 511
Period size: 157 Copynumber: 2.2 Consensus size: 158
503154 CTGACCTTTC
* *
503164 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA---T-AAAGACAGTCTTGACCTTTTTGA
*
503229 TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
62 TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
*
503294 GATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
127 GATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
** * * * * * *
503326 AAGACAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGAT-CAGATAGTCTTGATCTTTTTGGTAA
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGATAAAGACAGTCTTGACCTTTTTGATAA
*
503389 GGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
65 GGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
*
503454 CTTTTTGGTAAGGTTAGTCCTGACTGTGA
130 CTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
503483 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAT
503521 GACATACAAA
Statistics
Matches: 173, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
157 135 0.78
158 7 0.04
159 1 0.01
161 6 0.03
162 24 0.14
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (158 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGATAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 502664 -- 503163
GTCCGTTAGGGCTTCAGGGTTTGATGGGTTGAGCGGGCTTGGGGCATTTGTTTCCAATCTGAGTT
TCCGGTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGTCAGCGTACATGACTTTGCTTTGC
ATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTTTGGTTGGAACATCAATT
TGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTAT
AGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 503521 -- 504020
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
Found at i:503590 original size:16 final size:16
Alignment explanation
Indices: 503565--503596 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
503555 TCATTCTCAT
503565 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
503581 TAGTCTTGACCTTTCA
1 TAGTCCTGACCTTTCA
503597 AGAAGAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.41
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 503065 -- 503564
TTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 503597 -- 504096
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
Found at i:503633 original size:19 final size:22
Alignment explanation
Indices: 503582--503638 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 22
503572 GACCTTTCAT
503582 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC-A-AAGAATC
*
503606 AGTCCTGACCTTTC-AAG-A-C
1 AGTCTTGACCTTTCAAAGAATC
503625 AGTCTTGACCTTTC
1 AGTCTTGACCTTTC
503639 CATTTTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 14 0.45
20 1 0.03
21 3 0.10
24 13 0.42
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (22 bp):
AGTCTTGACCTTTCAAAGAATC
Left flanking sequence: Indices 503082 -- 503581
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 503639 -- 504138
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTT
Found at i:503762 original size:43 final size:43
Alignment explanation
Indices: 503701--503828 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
503691 TTCCATCAAA
* * * *
503701 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
503744 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
* *
503787 AGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
503829 GAGTACTAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.05
43 74 0.95
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 503201 -- 503700
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 503829 -- 504328
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:503790 original size:24 final size:24
Alignment explanation
Indices: 503719--503828 Score: 71
Period size: 19 Copynumber: 5.0 Consensus size: 24
503709 CCTTTCAAGA
* *
503719 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
503743 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
503762 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* *
503786 CAGTCCTGA-C--TGTGA-AA--T
1 CAGTCTTGACCTTTTTGATAAGGT
503804 ACAGTCTTGACCTTTTTGATAAGGT
1 -CAGTCTTGACCTTTTTGATAAGGT
503829 GAGTACTAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 23
0.64 0.12 0.24
Matches are distributed among these distances:
18 1 0.02
19 16 0.26
20 5 0.08
21 8 0.13
22 9 0.15
23 6 0.10
24 16 0.26
25 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 503219 -- 503718
ACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 503829 -- 504328
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:504056 original size:43 final size:42
Alignment explanation
Indices: 503995--504164 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
503985 TTCCATCAAA
**
503995 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
504038 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* *
504076 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
504114 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
504157 AGTACTGA
1 AGTCCTGA
504165 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.54
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 503495 -- 503994
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 504165 -- 504664
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
Found at i:504270 original size:19 final size:19
Alignment explanation
Indices: 504242--504312 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
504232 CTTCCATAAT
504242 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
504261 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
504279 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
504299 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
504313 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 503742 -- 504241
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 504313 -- 504812
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCAT
Found at i:504290 original size:38 final size:38
Alignment explanation
Indices: 504239--504369 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
504229 GTCCTTCCAT
504239 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
504277 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
504321 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
504358 AATCAGTCCTGA
1 AATCAGTCCTGA
504370 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 503739 -- 504238
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 504370 -- 504869
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCA
CCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTA
Found at i:504318 original size:286 final size:290
Alignment explanation
Indices: 503995--504564 Score: 920
Period size: 286 Copynumber: 2.0 Consensus size: 290
503985 TTCCATCAAA
*
503995 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAAGACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAG
504059 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
* * *
504124 TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TT
130 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT
*
504184 GTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCC
195 -TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCC
504248 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
258 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
*
504281 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
*
504346 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
** ** *
504411 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCA
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCCA
*
504476 TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
193 TTTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
504541 TGACCTTTCAAGACAGTCTTGACC
258 TGACCTTTCAAGACAGTCTTGACC
504565 TTTTTGGTAA
Statistics
Matches: 261, Mismatches: 13, Indels: 13
0.91 0.05 0.05
Matches are distributed among these distances:
286 164 0.63
287 6 0.02
289 3 0.01
292 1 0.00
293 83 0.32
294 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (290 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCAGAAGAATC
Left flanking sequence: Indices 503495 -- 503994
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 504565 -- 505064
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCA
CCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGA
ATTGCAATGAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGAC
Found at i:504345 original size:43 final size:42
Alignment explanation
Indices: 504279--504472 Score: 158
Period size: 43 Copynumber: 4.8 Consensus size: 42
504269 ACCAGAAGAA
**
504279 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
504322 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
504360 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
504398 TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
504441 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
504473 CCATTTTTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.03
38 21 0.18
39 3 0.03
41 20 0.17
42 1 0.01
43 59 0.50
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 503779 -- 504278
ATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 504473 -- 504972
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTA
AGGTGAGTTCTGACTTTTCCTCACGAATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAA
AGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTG
AGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
Found at i:504421 original size:76 final size:78
Alignment explanation
Indices: 504241--504428 Score: 265
Period size: 76 Copynumber: 2.4 Consensus size: 78
504231 CCTTCCATAA
**
504241 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTT
504306 GACCTTTTTGGTAAGG
63 GACCTTTTTGGTAAGG
* * *
504322 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
504385 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
504398 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCT-TGAAAGACAGTCTTGACC
504429 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
75 2 0.02
76 50 0.51
77 2 0.02
81 45 0.45
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 503741 -- 504240
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 504429 -- 504928
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCT
CACGAATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAG
TCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
Found at i:504600 original size:43 final size:42
Alignment explanation
Indices: 504553--504705 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
504543 ACCTTTCAAG
504553 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
504596 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
504631 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
504672 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
504706 TGACATACAA
Statistics
Matches: 84, Mismatches: 14, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 22 0.26
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 504053 -- 504552
AGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 504706 -- 505205
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGT
ATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAG
TCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATAC
AAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACA
AATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGT
Found at i:504892 original size:28 final size:28
Alignment explanation
Indices: 504860--505017 Score: 291
Period size: 28 Copynumber: 5.6 Consensus size: 28
504850 TGTTGGTATG
*
504860 GTGAGCACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
504888 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
504916 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
504944 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
504972 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
505000 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
505018 GAATTGCAAT
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
28 127 0.99
29 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 504360 -- 504859
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTT
TCCTCACGAATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 505018 -- 505517
GAATTGCAATGAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Found at i:505211 original size:24 final size:24
Alignment explanation
Indices: 505179--505263 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
505169 TTGACCGGAA
*
505179 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
505203 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
505222 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
505246 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
505264 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 504679 -- 505178
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCT
GACTTTTCCTCACGAATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGT
CCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGT
TTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
Right flanking sequence: Indices 505264 -- 505763
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATT
Found at i:505230 original size:19 final size:19
Alignment explanation
Indices: 505203--505277 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
505193 AAGAAGAATG
505203 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
505222 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
505246 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
505265 AGTCTTGACCTTT
1 AGTCCTGACCTTT
505278 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 504703 -- 505202
TGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTT
GGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAAT
GAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 505278 -- 505777
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
Found at i:505250 original size:43 final size:43
Alignment explanation
Indices: 505179--505317 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 43
505169 TTGACCGGAA
* *
505179 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
505222 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * ** *
505265 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGAC
505308 AGTCTTGACC
1 AGTCTTGACC
505318 AGAAGAATCA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 83 0.97
44 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 504679 -- 505178
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCT
GACTTTTCCTCACGAATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGT
CCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGT
TTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
Right flanking sequence: Indices 505318 -- 505817
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCT
TCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAG
Found at i:505369 original size:76 final size:78
Alignment explanation
Indices: 505203--505393 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
505193 AAGAAGAATG
**
505203 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
505268 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
505289 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
505352 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
505365 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
505394 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 504703 -- 505202
TGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTTCTGACTTTTCCTCACGAATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTT
GGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAAT
GAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 505394 -- 505893
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAA
TGACATTGGTTTGTACAGTGAGTACTAATGACATTGGTTTGTCAA
Found at i:505389 original size:43 final size:41
Alignment explanation
Indices: 505341--505437 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
505331 CTGATCAGAT
* * * *
505341 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
505384 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
505425 AGTCTTGACCTTT
1 AGTCTTGACCTTT
505438 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 504841 -- 505340
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTG
ACCTTTCTAAAATTATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGA
GTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 505438 -- 505937
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTG
TTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTGGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAAT
Found at i:505562 original size:43 final size:42
Alignment explanation
Indices: 505501--505670 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
505491 TTCCATCAAA
**
505501 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
505544 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
505582 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
505620 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
505663 AGTACTGA
1 AGTCCTGA
505671 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 505001 -- 505500
TGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCTAAAATTATAATGAGTCCTGACC
TGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCT
GTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 505671 -- 506170
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGACATTGGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGAC
ATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGAC
Found at i:505738 original size:64 final size:64
Alignment explanation
Indices: 505620--505755 Score: 202
Period size: 64 Copynumber: 2.1 Consensus size: 64
505610 TGGTAAGGTT
* * *
505620 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
* * *
505684 AGTCTTGACCTTTCAAA-ACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGA-CTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
505748 AGTCTTGA
1 AGTCTTGA
505756 TGGTCATTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 58 0.89
65 7 0.11
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (64 bp):
AGTCTTGACTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 505120 -- 505619
AGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCT
GACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 505756 -- 506255
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCC
TGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTGG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTG
AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTC
TGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCA
Found at i:505824 original size:19 final size:16
Alignment explanation
Indices: 505781--505826 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
505771 CATTCTCATT
505781 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
505797 AGTCTTGACCTTTCCAG
1 AGTCCTGACCTTT-CAG
505814 ACAGTCCTGACCT
1 --AGTCCTGACCT
505827 GTTTTGGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 12 0.48
17 3 0.12
19 10 0.40
ACGTcount: A:0.20, C:0.33, G:0.17, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 505281 -- 505780
GTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 505827 -- 506326
GTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTGGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTG
Found at i:506017 original size:28 final size:28
Alignment explanation
Indices: 505838--506020 Score: 234
Period size: 28 Copynumber: 6.6 Consensus size: 28
505828 TTTTGGTATG
* *
505838 GTGAGTACTAATGACATTGGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
* *
505866 GTGAGTACTAATGACATTGGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
505894 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
* *
505922 GTGAG-A-GACAT-ACAATTTG-TTGTCAA
1 GTGAGTACTA-ATGGC-ATTTGTTTGTCAA
505948 GTGAGTACTAATGGCATTT-TGTTGTCAA
1 GTGAGTACTAATGGCATTTGT-TTGTCAA
505976 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
506004 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
506021 ACAATTGTCA
Statistics
Matches: 140, Mismatches: 6, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
26 14 0.10
27 15 0.11
28 109 0.78
29 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 505338 -- 505837
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 506021 -- 506520
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGA
GTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGT
TTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATT
Found at i:506138 original size:43 final size:43
Alignment explanation
Indices: 506090--506171 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
506080 CTGATCTTTC
* * *
506090 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
506133 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
506172 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 505590 -- 506089
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAAT
GACATTGGTTTGTACAGTGAGTACTAATGACATTGGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 506172 -- 506671
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTAT
GGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAA
GAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACC
TTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGT
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGG
CATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTC
CAGAATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAA
Found at i:506233 original size:19 final size:16
Alignment explanation
Indices: 506192--506222 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
506182 CATTCTCATT
506192 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
506208 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
506223 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 505692 -- 506191
CCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCT
GACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTGGT
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 506223 -- 506722
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAA
TGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACA
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATT
TGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAAT
TGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGA
Found at i:506251 original size:76 final size:76
Alignment explanation
Indices: 506165--506308 Score: 288
Period size: 76 Copynumber: 1.9 Consensus size: 76
506155 TAAGGTGAGT
506165 TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
1 TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
506230 CCTGTATGGAA
66 CCTGTATGGAA
506241 TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
1 TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
506306 CCT
66 CCT
506309 CACCTTTTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (76 bp):
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
CCTGTATGGAA
Left flanking sequence: Indices 505665 -- 506164
TACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTT
TGTACAGTGAGTACTAATGACATTGGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
Right flanking sequence: Indices 506309 -- 506808
CACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAT
AATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGA
GTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGG
AAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATT
AGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
Found at i:506308 original size:19 final size:16
Alignment explanation
Indices: 506268--506298 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
506258 CATTCTCATT
506268 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
506284 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
506299 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 505768 -- 506267
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTG
GTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTGGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGC
ATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTG
TCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAG
ACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 506299 -- 506798
AAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTG
ACCTTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTT
TGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAA
TGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCC
TTCCAGAATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
Found at i:506463 original size:20 final size:20
Alignment explanation
Indices: 506438--506519 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
506428 TTGTACAGTG
506438 AGTACTAATGGCATATGGAA
1 AGTACTAATGGCATATGGAA
*
506458 AGTACTAATGGCATTTGTTTGCACA
1 AGTACTAATGGCATATG---G-A-A
506483 GTGAGTACTAATGGCATATGGAA
1 ---AGTACTAATGGCATATGGAA
506506 AGTACTAATGGCAT
1 AGTACTAATGGCAT
506520 TTTGTTGTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTACTAATGGCATATGGAA
Left flanking sequence: Indices 505938 -- 506437
TTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAA
GAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTC
TCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCC
ATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTG
Right flanking sequence: Indices 506520 -- 507019
TTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAA
AAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTC
CTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAA
Found at i:506490 original size:28 final size:28
Alignment explanation
Indices: 506458--506602 Score: 129
Period size: 28 Copynumber: 5.5 Consensus size: 28
506448 GCATATGGAA
506458 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
*
506486 AGTACTAATGGCATATG---G--AA---
1 AGTACTAATGGCATTTGTTTGTCAAGTG
506506 AGTACTAATGGCATTT-TGTTGTCAAGTG
1 AGTACTAATGGCATTTGT-TTGTCAAGTG
* *
506534 AG-A-GACAT-ACAATTTG-TTGTCAAGTG
1 AGTACTA-ATGGC-ATTTGTTTGTCAAGTG
506560 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
506588 AGTACTAATGGCATT
1 AGTACTAATGGCATT
506603 GAATTGCAAT
Statistics
Matches: 95, Mismatches: 6, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
20 15 0.16
23 2 0.02
24 1 0.01
25 3 0.03
26 14 0.15
27 15 0.16
28 45 0.47
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 505958 -- 506457
ATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATAC
AATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTT
TCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACC
TTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
GAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGT
ACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 506603 -- 507102
GAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGAC
TTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTCCTGACTTTT
CCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
Found at i:506535 original size:48 final size:48
Alignment explanation
Indices: 506410--506521 Score: 197
Period size: 48 Copynumber: 2.3 Consensus size: 48
506400 TGGTATGGTG
* * *
506410 AGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
506458 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
506506 AGTACTAATGGCATTT
1 AGTACTAATGGCATTT
506522 TGTTGTCAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (48 bp):
AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
Left flanking sequence: Indices 505910 -- 506409
TTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTG
ACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGA
CTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGT
ATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAA
AAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CCTTTCCATAATGAGTCCTGACCTTTCCATCTTTTTGGTATGGTG
Right flanking sequence: Indices 506522 -- 507021
TGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAA
GAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAG
TCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCT
CACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGA
Found at i:506658 original size:19 final size:19
Alignment explanation
Indices: 506634--506726 Score: 114
Period size: 19 Copynumber: 4.6 Consensus size: 19
506624 TTCCAGAATT
506634 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
506653 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
506677 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
506696 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
506715 AGTCCTGACCTT
1 AGTCCTGACCTT
506727 CCTGACTTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
19 41 0.65
20 1 0.02
21 2 0.03
22 2 0.03
23 2 0.03
24 15 0.24
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 506134 -- 506633
AGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAG
TACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCCA
TCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAA
GTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTG
TTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATT
Right flanking sequence: Indices 506727 -- 507226
CCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
Found at i:506681 original size:43 final size:43
Alignment explanation
Indices: 506628--506800 Score: 168
Period size: 43 Copynumber: 3.9 Consensus size: 43
506618 CTGTCCTTCC
* *
506628 AGAATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGA
1 AGAATGAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAGA
* *
506671 AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA-A
1 AGAATGAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAGA
* * * **
506713 AGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGA
1 AGA---ATGA--GTCCTGACCTTT-CA-AAACAGTCCTGACCTTTCAAGA
* * *
506763 AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGAATGAGTCCTGACCTTTCAAAACAGTCCTGACCTTT
506801 TTGGTAAGGT
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
42 4 0.04
43 50 0.49
44 2 0.02
45 13 0.13
47 12 0.12
48 2 0.02
49 16 0.16
50 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
AGAATGAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 506128 -- 506627
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACC
TTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATA
TGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGC
ATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCC
Right flanking sequence: Indices 506801 -- 507300
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTCCTGACTTTTCCA
TAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAA
AGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAA
Found at i:506684 original size:24 final size:24
Alignment explanation
Indices: 506628--506694 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
506618 CTGTCCTTCC
*
506628 AGAATTAGTCCTGACCTTTC---A
1 AGAATGAGTCCTGACCTTTCAAGA
506649 A-AA-GAGTCCTGACCTTTCAAGA
1 AGAATGAGTCCTGACCTTTCAAGA
506671 AGAATGAGTCCTGACCTTTCAAGA
1 AGAATGAGTCCTGACCTTTCAAGA
506695 CAGTCTTGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 14 0.35
20 2 0.05
21 1 0.03
22 2 0.05
23 2 0.05
24 19 0.47
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (24 bp):
AGAATGAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 506128 -- 506627
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACC
TTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATA
TGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGC
ATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCC
Right flanking sequence: Indices 506695 -- 507194
CAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAATCAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAA
GAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
Found at i:506814 original size:43 final size:42
Alignment explanation
Indices: 506767--507259 Score: 219
Period size: 43 Copynumber: 11.8 Consensus size: 42
506757 TCAAGAAGAA
506767 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * * *
506810 TCAGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
506848 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
506886 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * * *** *
506929 TGAGTACTGATGACATACAA-ATGAGTCTTGACC-TTTCAATCAAGTCC
1 TCAGT-C--CTGACTTTCAAGA-CAGTCTTGACCTTTTTGGT-AAG--G
* * * *** *
506976 TCACCTTCCTGACTTTTCCATA-ATGAGTCCTGACCTTTCAAG-AAGAA
1 TCA--GTCCTGAC-TTT-CA-AGA-CAGTCTTGACCTTTTTGGTAAG-G
* *** *
507023 TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
507066 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * *
507109 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
507147 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
507185 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
*
507228 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTT
507260 CCATTTTTGG
Statistics
Matches: 345, Mismatches: 64, Indels: 84
0.70 0.13 0.17
Matches are distributed among these distances:
33 23 0.07
37 6 0.02
38 42 0.12
39 6 0.02
41 20 0.06
42 5 0.01
43 168 0.49
44 13 0.04
45 24 0.07
46 10 0.03
47 5 0.01
48 6 0.02
49 14 0.04
50 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 506267 -- 506766
TAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTTTCCATCT
TTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTA
CTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTG
TCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAAGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTG
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 507260 -- 507759
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTTCTGACTTTTATTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
Found at i:506892 original size:76 final size:78
Alignment explanation
Indices: 506760--506916 Score: 228
Period size: 76 Copynumber: 2.0 Consensus size: 78
506750 TGACCTTTCA
506760 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
*
506825 AAATACAGTCTTGACC
63 AAAGACAGTCTTGACC
* * * *
506841 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
506904 GACAGTCTTGACC
66 GACAGTCTTGACC
506917 TTTTTGATAA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 52 0.73
77 2 0.03
81 17 0.24
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACC
Left flanking sequence: Indices 506260 -- 506759
TTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAATGAGTCCTGACCTT
TCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATG
GAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCAT
TTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAA
AAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
Right flanking sequence: Indices 506917 -- 507416
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCT
TCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
Found at i:507029 original size:24 final size:24
Alignment explanation
Indices: 507001--507085 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
506991 TTCCATAATG
*
507001 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
507025 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
507044 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
507068 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
507086 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 506501 -- 507000
TGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGA
ATTAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAATCAAGTCCTCACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 507086 -- 507585
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTATT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCA
Found at i:507052 original size:19 final size:19
Alignment explanation
Indices: 507025--507099 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
507015 AAGAAGAATG
507025 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
507044 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
507068 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
507087 AGTCTTGACCTTT
1 AGTCCTGACCTTT
507100 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 506525 -- 507024
TGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAAGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCC
TGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 507100 -- 507599
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTATTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCC
Found at i:507191 original size:76 final size:79
Alignment explanation
Indices: 507025--507215 Score: 244
Period size: 76 Copynumber: 2.4 Consensus size: 79
507015 AAGAAGAATG
**
507025 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---CAAGAAGAATCAGTCCTGA-C--TCAAGACAGT
507090 CTTGACCTTTTTGGTAAGGTC
59 CTTGACCTTTTTGGTAAGGTC
* *
507111 AGTCCTGACCTTGAAAGACAGTCTTGACC-AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATC
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACC
*
507173 TTTTTGGTAAGGTT
66 TTTTTGGTAAGGTC
*
507187 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
507216 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
76 53 0.54
77 2 0.02
81 17 0.17
82 1 0.01
85 1 0.01
86 25 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (79 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACC
TTTTTGGTAAGGTC
Left flanking sequence: Indices 506525 -- 507024
TGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTGAATTGCAATTGGTCCTGTCCTTCCAGAATTAGTCCTGACCTTTCAAAAGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCC
TGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 507216 -- 507715
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTATT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
Found at i:507384 original size:43 final size:42
Alignment explanation
Indices: 507323--507492 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
507313 TTCCATCAAA
**
507323 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
507366 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * * *
507404 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
507442 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
507485 AGTACTGA
1 AGTCCTGA
507493 TGACATACAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.22
39 2 0.02
41 1 0.01
42 2 0.02
43 54 0.56
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 506823 -- 507322
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAATCAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 507493 -- 507992
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTATTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATA
ACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATCAGAAAAAGAGGGCTTTGTTCTGA
CGTGACGTGACCTTCAGCAATTTGAAGTTGCGAGTGCTTTGACTA
Found at i:507579 original size:16 final size:16
Alignment explanation
Indices: 507555--507585 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
507545 CATTCTCATT
507555 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
507571 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
507586 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 507055 -- 507554
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTTCTGACTTTTATTCAATCATTCTCATT
Right flanking sequence: Indices 507586 -- 508085
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTC
CATTGGTCTGAATCAGAAAAAGAGGGCTTTGTTCTGACGTGACGTGACCTTCAGCAATTTGAAGT
TGCGAGTGCTTTGACTATCAGACGTGCAAAGCCCACAAAGCACTCGCAAAGAGGGCTTTGCTCGT
GACTTTGTTCGCTTTGCGAGTGCTTTGACTATCAAAGATCCGAGC
Found at i:507751 original size:43 final size:43
Alignment explanation
Indices: 507704--507817 Score: 201
Period size: 43 Copynumber: 2.7 Consensus size: 43
507694 CTGACCTTTC
* *
507704 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
507747 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
507790 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
507818 GAGTACTAAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 507204 -- 507703
ACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTT
CTGACTTTTATTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 507818 -- 508317
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATA
ACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATCAGAAAAAGAGGGCTTTGTTCTGA
CGTGACGTGACCTTCAGCAATTTGAAGTTGCGAGTGCTTTGACTATCAGACGTGCAAAGCCCACA
AAGCACTCGCAAAGAGGGCTTTGCTCGTGACTTTGTTCGCTTTGCGAGTGCTTTGACTATCAAAG
ATCCGAGCTTCCATTCATTTTGTCCTGACTCACTAGGCGAAGGGTCTGATATTGCGTTTGCATAC
TCGACGAGAGAGAAATGAGATATGAGAGAGACGAGGGGTGAAAACCAATAAAAACATTAACGGAT
TTGGGATATGCAGATGGAAGAGATGCTTAGGAAGAGTACTACCTTTGTGTAGAATACATTGAATT
GGTTAGGGAAAAGAGTTAGCTGTTGTTGCTGGAGCCAGTTCTCTT
Found at i:507760 original size:19 final size:19
Alignment explanation
Indices: 507733--507803 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
507723 TGGTAAGGTT
*
507733 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
507752 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
507776 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
507795 AGTCTTGAC
1 AGTCCTGAC
507804 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 507233 -- 507732
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTATTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 507804 -- 508303
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATCAGAAAAAGA
GGGCTTTGTTCTGACGTGACGTGACCTTCAGCAATTTGAAGTTGCGAGTGCTTTGACTATCAGAC
GTGCAAAGCCCACAAAGCACTCGCAAAGAGGGCTTTGCTCGTGACTTTGTTCGCTTTGCGAGTGC
TTTGACTATCAAAGATCCGAGCTTCCATTCATTTTGTCCTGACTCACTAGGCGAAGGGTCTGATA
TTGCGTTTGCATACTCGACGAGAGAGAAATGAGATATGAGAGAGACGAGGGGTGAAAACCAATAA
AAACATTAACGGATTTGGGATATGCAGATGGAAGAGATGCTTAGGAAGAGTACTACCTTTGTGTA
GAATACATTGAATTGGTTAGGGAAAAGAGTTAGCTGTTGTTGCTG
Found at i:515191 original size:28 final size:28
Alignment explanation
Indices: 515151--515217 Score: 134
Period size: 28 Copynumber: 2.4 Consensus size: 28
515141 CATTGGGAGC
515151 ACTAATGGCATTTGTTTGTACAGTGAGT
1 ACTAATGGCATTTGTTTGTACAGTGAGT
515179 ACTAATGGCATTTGTTTGTACAGTGAGT
1 ACTAATGGCATTTGTTTGTACAGTGAGT
515207 ACTAATGGCAT
1 ACTAATGGCAT
515218 ACAATTGCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (28 bp):
ACTAATGGCATTTGTTTGTACAGTGAGT
Left flanking sequence: Indices 514651 -- 515150
TTGTTGCTTGTTGCTCGTCAAAACACTCGCTCCTACAACTTCGCTCGCTCGTAGGCCTCTCTCAT
CTCAGTCAGCTTGGTTCCCCCGAATCACGAAAGTGGATTTTGTCTATGCATTCCCATCTATAAGC
CAAGCATCCCTTCGGCATTGCCCTGAACCCCGTGCCCCGAATGAATCAAGGCCAACTACTATTGA
TTAAGATGAAGTAGGGTCGGGTTGGCCTTTCACCCCCGCACTCGACTTCGTCCGAAGGTTCCGCC
TGCCATGAAAGAAAGCAGAAGTTCGGCCCAACGTCACGAGATTCGCAAAGCCCACAAAGCACTCG
CAAAGTGAACCGTTCACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAG
TTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCT
TATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGC
Right flanking sequence: Indices 515218 -- 515717
ACAATTGCAATTAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
Found at i:515379 original size:95 final size:98
Alignment explanation
Indices: 515201--515380 Score: 258
Period size: 99 Copynumber: 1.9 Consensus size: 98
515191 TGTTTGTACA
* *
515201 GTGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATTAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
515266 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * * **
515300 GTGAGTACTAATGGCATACAATTGCAATTGGTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTTT
1 GTGAGTACTAATGGCATACAATTGCAATTAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
*
515362 CAAGACAGTCTTGACCTTT
66 CAAGACAGTCTTAACCTTT
515381 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 33 0.45
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATTAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 514701 -- 515200
GTAGGCCTCTCTCATCTCAGTCAGCTTGGTTCCCCCGAATCACGAAAGTGGATTTTGTCTATGCA
TTCCCATCTATAAGCCAAGCATCCCTTCGGCATTGCCCTGAACCCCGTGCCCCGAATGAATCAAG
GCCAACTACTATTGATTAAGATGAAGTAGGGTCGGGTTGGCCTTTCACCCCCGCACTCGACTTCG
TCCGAAGGTTCCGCCTGCCATGAAAGAAAGCAGAAGTTCGGCCCAACGTCACGAGATTCGCAAAG
CCCACAAAGCACTCGCAAAGTGAACCGTTCACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGT
ACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAG
CGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 515381 -- 515880
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
Found at i:515410 original size:43 final size:43
Alignment explanation
Indices: 515363--515818 Score: 223
Period size: 43 Copynumber: 10.7 Consensus size: 43
515353 CTGACCTTTC
*
515363 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
515406 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
515449 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * * *
515482 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * * **
515525 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA-TGACA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * * * *** *** *
515567 TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT-T-T
1 -A-AGA-CAGTCTTGA----CCTT-TTTGGT-AAGGTC---AGTCCTGA-CTGTGA
* *** * **
515621 CAG--AGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCT-TTC
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGA
*** * **
515662 AAGACAGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCT-TTC
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGA
* *
515705 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
515748 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
515791 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGGTAAGGT
515819 GAGTACTAAT
Statistics
Matches: 324, Mismatches: 57, Indels: 64
0.73 0.13 0.14
Matches are distributed among these distances:
33 11 0.03
35 1 0.00
37 3 0.01
38 20 0.06
39 3 0.01
40 12 0.04
41 3 0.01
42 5 0.02
43 224 0.69
44 6 0.02
45 11 0.03
49 11 0.03
50 3 0.01
51 2 0.01
52 1 0.00
54 7 0.02
56 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 514863 -- 515362
CGGGTTGGCCTTTCACCCCCGCACTCGACTTCGTCCGAAGGTTCCGCCTGCCATGAAAGAAAGCA
GAAGTTCGGCCCAACGTCACGAGATTCGCAAAGCCCACAAAGCACTCGCAAAGTGAACCGTTCAC
GTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTG
ATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACA
CTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 515819 -- 516318
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
Found at i:515419 original size:19 final size:19
Alignment explanation
Indices: 515392--515462 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
515382 TGGTAAGGTT
515392 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
515411 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
515435 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
515454 AGTCTTGAC
1 AGTCCTGAC
515463 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 514892 -- 515391
TTCGTCCGAAGGTTCCGCCTGCCATGAAAGAAAGCAGAAGTTCGGCCCAACGTCACGAGATTCGC
AAAGCCCACAAAGCACTCGCAAAGTGAACCGTTCACGTCACGAGCCAATTTCAAAGTCAAGGTCA
GCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCC
AAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATTAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 515463 -- 515962
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCT
Found at i:515443 original size:24 final size:24
Alignment explanation
Indices: 515367--515443 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
515357 CCTTTCAAGA
* *
515367 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
515391 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
515410 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
515434 CAGTCCTGAC
1 CAGTCCTGAC
515444 TGTGAAATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 514867 -- 515366
TTGGCCTTTCACCCCCGCACTCGACTTCGTCCGAAGGTTCCGCCTGCCATGAAAGAAAGCAGAAG
TTCGGCCCAACGTCACGAGATTCGCAAAGCCCACAAAGCACTCGCAAAGTGAACCGTTCACGTCA
CGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTT
GCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAA
TGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 515444 -- 515943
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCT
Found at i:515656 original size:24 final size:24
Alignment explanation
Indices: 515624--515704 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
515614 GACCTTTCAG
*
515624 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
515648 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
515667 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
515691 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
515705 AAGACAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 26 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 515124 -- 515623
TAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 515705 -- 516204
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:515675 original size:19 final size:19
Alignment explanation
Indices: 515608--515722 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
515598 CATTCTCATT
515608 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
515624 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
515648 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
515667 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
515691 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
515710 AGTCTTGACCTTT
1 AGTCCTGACCTTT
515723 TTGGTCAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.15
17 1 0.01
19 26 0.32
20 5 0.06
21 6 0.07
22 3 0.04
23 3 0.04
24 25 0.31
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 515108 -- 515607
TGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 515723 -- 516222
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTC
Found at i:515761 original size:19 final size:19
Alignment explanation
Indices: 515734--515804 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
515724 TGGTCAGGTT
515734 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
515753 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
515777 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
515796 AGTCTTGAC
1 AGTCCTGAC
515805 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 515234 -- 515733
TTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 515805 -- 516304
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
Found at i:515785 original size:24 final size:24
Alignment explanation
Indices: 515752--515818 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 24
515742 CTGTGAAAGA
515752 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
515776 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
515795 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
515819 GAGTACTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 9 0.28
20 3 0.09
21 4 0.12
22 4 0.12
23 3 0.09
24 9 0.28
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 515252 -- 515751
TCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
Right flanking sequence: Indices 515819 -- 516318
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
Found at i:515837 original size:266 final size:263
Alignment explanation
Indices: 515349--516664 Score: 930
Period size: 286 Copynumber: 4.9 Consensus size: 263
515339 TTCCATCAAA
*** * * **
515349 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTGTGAAAGACA
1 AGTCCTGACCTTTCAAGA-AGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCT-TTCAAGACA
** * *
515412 GTCTTGACCTTT-TTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
63 GTCTTGACCTTTCCAG-TAAGATCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
* * *
515476 CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
127 CCTGATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
515541 TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC-TCAATCA-T-T-
192 TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCAT-AATCAGTCTA
*
515602 C-TC-ATT
256 CTTCAATG
515608 AGTCCTGACCTTTC-AG-AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
1 AGTCCTGACCTTTCAAGAAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
** * * *
515671 TTGACCTTTCCAG-AAGAATCAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTCAG-GT
66 TTGACCTTTCCAGTAAG-ATCAGTCCTGA-CTGTGAAAGACAGTCTTGACC-----AG-AAGAAT
* * * *
515733 TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAG
123 CAGTCCTGA---T--AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
* * * * * * *
515798 TCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA--ATTGGTCCTGTCCTTCCA
183 TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG-AGTCTTGAT--GGTCATTCCA
515861 TAATCAGTCCTGACCTTTCAAGAAGAATG
245 TAATCAGT-CT-A-C-TTC------AATG
515890 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGA-AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
* *** * *
515955 CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
65 CTTGACCTTTCCAGTAAGATCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCT
* *
516020 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
130 GATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
516085 TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATA
195 TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG-ATGGTCA--T---T-C------CAT-
* *
516150 CAATTGCAATTGGTCCTGTCCTTCCATAATC
246 -AA-T-C-A---GT-C--TACTT-C--AATG
516181 AGTCCTGACCTTTCAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGA-AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
*** * *
516241 CTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCC
65 CTTGACCTTTCCAGTAAGATCAGTCCTGA-CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
* * *
516305 TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTT
129 TGATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
* ** * ** * ** * * *
516370 TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT-GAGTACT
194 TTGATAAGGTGAGTACTGATGAC-ATACA--AATGA---GT-C-TTGATGGTCA-TTCCA-TAAT
* *
516434 AATGGCATACAATTGCAATTG
249 CA-GTC-TAC--TT-CAA-TG
* *
516455 -GTCCTGTCCTTCCATCAA-AAGTCCTGACCTTT-C--AAG-A-CAG---T---C-TT---GAC-
1 AGTCCTGACCTT---TCAAGAAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
* * *
516502 --CTT----TTT--GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTC
63 GTCTTGACCTTTCCAGTAAGATCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTC
* *
516559 CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTT
128 CTGATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTT
*
516624 TTTGATAAGGTGAGTACTAATGACATACAAATGAGTCTTGA
193 TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
516665 CCTTCCTGAC
Statistics
Matches: 876, Mismatches: 92, Indels: 190
0.76 0.08 0.16
Matches are distributed among these distances:
247 2 0.00
248 1 0.00
249 1 0.00
252 3 0.00
254 6 0.01
255 138 0.16
256 67 0.08
257 8 0.01
258 2 0.00
259 14 0.02
261 13 0.01
262 2 0.00
264 4 0.00
265 4 0.00
266 84 0.10
267 15 0.02
268 3 0.00
270 1 0.00
271 1 0.00
273 15 0.02
274 13 0.01
275 96 0.11
276 10 0.01
277 4 0.00
278 1 0.00
279 3 0.00
280 12 0.01
281 2 0.00
282 17 0.02
283 2 0.00
284 2 0.00
285 81 0.09
286 180 0.21
287 9 0.01
289 6 0.01
290 1 0.00
291 32 0.04
292 3 0.00
293 7 0.01
294 4 0.00
295 6 0.01
297 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (263 bp):
AGTCCTGACCTTTCAAGAAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCCAGTAAGATCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCATAATCAGTCTACTTCA
ATG
Left flanking sequence: Indices 514849 -- 515348
AGATGAAGTAGGGTCGGGTTGGCCTTTCACCCCCGCACTCGACTTCGTCCGAAGGTTCCGCCTGC
CATGAAAGAAAGCAGAAGTTCGGCCCAACGTCACGAGATTCGCAAAGCCCACAAAGCACTCGCAA
AGTGAACCGTTCACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTG
CGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTAT
GATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 516665 -- 517164
CCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAATCAAGTCCTGACTTTTCCATAACCTTT
CCATAAGCTCACAAAAGATAAGCCCTCTGAAAAAGAGGGCTTTGCACAAAGCACTCGCAAAGCGT
AGGGCTTTGCTCGTGACGTGACGTGACATGACAGCCCTCTTCGCTTTGCGAGTGCTTTGTCGCTT
TGCGAGTGCGTGCTTTGTTCCTCGCTTTTCTCAATTAACATGGATCCACTCGAAAATCCACTTCC
ACTATGGAGAGAATTGTGGTTGATAAGAAGATTGGGATCTCGTGTTGTTATTTCAGTTAGGCTGA
GCCTACTCACTTTTGAATTGGAAAGAACACTACCTATCATTCCGTTCCGCAGAAGCAGAAAGTGT
TTGAACATTGACTATTCTACTTATTATCACATTGACTAGAAAAAGAACGGATCCATAATGATTTG
AGTTCAGAATGGCATTTCAATAGTCCAGATCAAACGAAGGCTATA
Found at i:515898 original size:24 final size:24
Alignment explanation
Indices: 515862--515950 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
515852 GTCCTTCCAT
515862 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
515886 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
* *
515907 -A-CAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
515929 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
515951 CAGTCTTGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
19 13 0.24
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 34 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 515362 -- 515861
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 515951 -- 516450
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
Found at i:515964 original size:19 final size:19
Alignment explanation
Indices: 515890--515964 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
515880 AAGAAGAATG
*
515890 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
515909 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAG-A-C
*
515933 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
515952 AGTCTTGATCTTT
1 AGTCTTGACCTTT
515965 TTGGTAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 24 0.51
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.28
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 515390 -- 515889
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 515965 -- 516464
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAT
ACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
Found at i:515984 original size:43 final size:43
Alignment explanation
Indices: 515865--515964 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
515855 CTTCCATAAT
* * *
515865 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
515908 CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
*
515951 CAGTCTTGATCTTT
1 CAGTCTTGACCTTT
515965 TTGGTAAGGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 515365 -- 515864
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 515965 -- 516464
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAT
ACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
Found at i:515997 original size:43 final size:43
Alignment explanation
Indices: 515950--516102 Score: 121
Period size: 43 Copynumber: 3.8 Consensus size: 43
515940 ACCTTTCAAG
515950 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
** * * *
515993 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* *
516028 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
516069 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
516103 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 515450 -- 515949
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 516103 -- 516602
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
Found at i:516056 original size:76 final size:78
Alignment explanation
Indices: 515922--516080 Score: 250
Period size: 76 Copynumber: 2.0 Consensus size: 78
515912 CTTGACCTTT
515922 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
*
515987 TGAAATACAGTCTTGA
63 TGAAAGACAGTCTTGA
* *
516003 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
516066 AAGACAGTCTTGA
66 AAGACAGTCTTGA
516079 CC
1 CC
516081 TTTTTGATAA
Statistics
Matches: 75, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
76 54 0.72
77 2 0.03
81 19 0.25
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 515422 -- 515921
TTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 516081 -- 516580
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
Found at i:516208 original size:19 final size:19
Alignment explanation
Indices: 516180--516250 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
516170 CTTCCATAAT
516180 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
516199 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
516217 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
516237 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
516251 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 515680 -- 516179
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 516251 -- 516750
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TAATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAATCA
AGTCCTGACTTTTCCATAACCTTTCCATAAGCTCACAAAAGATAA
Found at i:516228 original size:38 final size:38
Alignment explanation
Indices: 516177--516307 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
516167 GTCCTTCCAT
516177 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
516215 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
516259 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
516296 AATCAGTCCTGA
1 AATCAGTCCTGA
516308 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 515677 -- 516176
TTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 516308 -- 516807
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCT
TTCAATCAAGTCCTGACTTTTCCATAACCTTTCCATAAGCTCACAAAAGATAAGCCCTCTGAAAA
AGAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCG
Found at i:516281 original size:286 final size:290
Alignment explanation
Indices: 515890--516502 Score: 979
Period size: 286 Copynumber: 2.1 Consensus size: 290
515880 AAGAAGAATG
515890 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
*
515955 CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
61 CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
516020 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
126 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
* *
516085 TGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TTGTATGGTCAGGTGAGTACTAATG
191 TGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT-TATGGTCAGGTGAGTACTAATG
*
516145 GCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATC
255 GCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-A
516181 AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
516246 CCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
66 CCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
*
516310 AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGAT
130 AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
** ** * *
516375 AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
195 AAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCCATTTATGGTCAGGTGAGTACTAATGGC
516440 ATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
257 ATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
516474 AGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGTCCTGACCTTTCAAGACAGTCTTGACC
516503 TTTTTGGTAA
Statistics
Matches: 301, Mismatches: 11, Indels: 18
0.91 0.03 0.05
Matches are distributed among these distances:
286 177 0.59
287 6 0.02
289 3 0.01
291 27 0.09
292 1 0.00
293 83 0.28
294 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (290 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATGACAAGACAGAATGACGTCCATTTATGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAA
Left flanking sequence: Indices 515390 -- 515889
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 516503 -- 517002
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCT
TTCAATCAAGTCCTGACTTTTCCATAACCTTTCCATAAGCTCACAAAAGATAAGCCCTCTGAAAA
AGAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGACATGACA
GCCCTCTTCGCTTTGCGAGTGCTTTGTCGCTTTGCGAGTGCGTGCTTTGTTCCTCGCTTTTCTCA
ATTAACATGGATCCACTCGAAAATCCACTTCCACTATGGAGAGAATTGTGGTTGATAAGAAGATT
GGGATCTCGTGTTGTTATTTCAGTTAGGCTGAGCCTACTCACTTT
Found at i:516283 original size:43 final size:42
Alignment explanation
Indices: 516217--516410 Score: 149
Period size: 43 Copynumber: 4.8 Consensus size: 42
516207 ACCAGAAGAA
** *
516217 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAATACAGTCTTGACCTTTTTGGTAAGG
* *
516260 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAATACAGTCTTGACCTTTTTGGTAAG-G
* * *
516298 TCAGTCCTGA--TCAGAT--AGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAATACAGTCTTGACCTTTTTGGTAAGG
* *
516336 TTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TGAAATACAGTCTTGACCTTTTTGGTAAGG
* ** *
516379 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAATACAGTCTTGACCTTT
516411 CCATTTTTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
33 9 0.08
35 4 0.03
37 3 0.03
38 21 0.18
39 3 0.03
41 22 0.18
42 1 0.01
43 56 0.47
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAATACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 515717 -- 516216
ACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 516411 -- 516910
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGAGTCTTGACCTTCC
TGACTTTTCCATAATGAGTCCTGACCTTTCAATCAAGTCCTGACTTTTCCATAACCTTTCCATAA
GCTCACAAAAGATAAGCCCTCTGAAAAAGAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCT
TTGCTCGTGACGTGACGTGACATGACAGCCCTCTTCGCTTTGCGAGTGCTTTGTCGCTTTGCGAG
TGCGTGCTTTGTTCCTCGCTTTTCTCAATTAACATGGATCCACTC
Found at i:516354 original size:76 final size:78
Alignment explanation
Indices: 516179--516366 Score: 265
Period size: 76 Copynumber: 2.4 Consensus size: 78
516169 CCTTCCATAA
** *
516179 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTT
516244 GACCTTTTTGGTAAGG
63 GACCTTTTTGGTAAGG
* *
516260 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
516323 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
516336 TTAGTCCTGA-CTGTGAAATACAGTCTTGACC
1 TCAGTCCTGACCT-TGAAATACAGTCTTGACC
516367 TTTTTGATAA
Statistics
Matches: 100, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
75 2 0.02
76 51 0.51
77 2 0.02
81 45 0.45
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 515679 -- 516178
TCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 516367 -- 516866
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTAATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCC
TGACCTTTCAATCAAGTCCTGACTTTTCCATAACCTTTCCATAAGCTCACAAAAGATAAGCCCTC
TGAAAAAGAGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGAC
ATGACAGCCCTCTTCGCTTTGCGAGTGCTTTGTCGCTTTGCGAGT
Found at i:516538 original size:43 final size:43
Alignment explanation
Indices: 516491--516634 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 43
516481 ACCTTTCAAG
516491 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
516534 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* * *
516569 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
*
516610 ACAGTCTTGACCTTTTTGATAAGGT
1 ACAGTCTTGACCTTTTTGGTAAGGT
516635 GAGTACTAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
33 9 0.12
35 4 0.05
37 3 0.04
38 21 0.28
39 3 0.04
41 3 0.04
43 33 0.43
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 515991 -- 516490
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 516635 -- 517134
GAGTACTAATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTT
CAATCAAGTCCTGACTTTTCCATAACCTTTCCATAAGCTCACAAAAGATAAGCCCTCTGAAAAAG
AGGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGACATGACAGC
CCTCTTCGCTTTGCGAGTGCTTTGTCGCTTTGCGAGTGCGTGCTTTGTTCCTCGCTTTTCTCAAT
TAACATGGATCCACTCGAAAATCCACTTCCACTATGGAGAGAATTGTGGTTGATAAGAAGATTGG
GATCTCGTGTTGTTATTTCAGTTAGGCTGAGCCTACTCACTTTTGAATTGGAAAGAACACTACCT
ATCATTCCGTTCCGCAGAAGCAGAAAGTGTTTGAACATTGACTATTCTACTTATTATCACATTGA
CTAGAAAAAGAACGGATCCATAATGATTTGAGTTCAGAATGGCAT
Found at i:516694 original size:21 final size:19
Alignment explanation
Indices: 516668--516724 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
516658 GTCTTGACCT
516668 TCCTGACTTTTCCATAATGAG
1 TCCTGACTTTTCCATAA--AG
* * *
516689 TCCTGACCTTTCAATCAAG
1 TCCTGACTTTTCCATAAAG
516708 TCCTGACTTTTCCATAA
1 TCCTGACTTTTCCATAA
516725 CCTTTCCATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 16 0.53
21 14 0.47
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (19 bp):
TCCTGACTTTTCCATAAAG
Left flanking sequence: Indices 516168 -- 516667
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGACATACAAATGAGTCTTGACCT
Right flanking sequence: Indices 516725 -- 517224
CCTTTCCATAAGCTCACAAAAGATAAGCCCTCTGAAAAAGAGGGCTTTGCACAAAGCACTCGCAA
AGCGTAGGGCTTTGCTCGTGACGTGACGTGACATGACAGCCCTCTTCGCTTTGCGAGTGCTTTGT
CGCTTTGCGAGTGCGTGCTTTGTTCCTCGCTTTTCTCAATTAACATGGATCCACTCGAAAATCCA
CTTCCACTATGGAGAGAATTGTGGTTGATAAGAAGATTGGGATCTCGTGTTGTTATTTCAGTTAG
GCTGAGCCTACTCACTTTTGAATTGGAAAGAACACTACCTATCATTCCGTTCCGCAGAAGCAGAA
AGTGTTTGAACATTGACTATTCTACTTATTATCACATTGACTAGAAAAAGAACGGATCCATAATG
ATTTGAGTTCAGAATGGCATTTCAATAGTCCAGATCAAACGAAGGCTATAAGTGGATTGTGGAGG
GTCCCGCGCAACGAGTGATTGAGACTTGGTGAATGCCACATCAGA
Found at i:527235 original size:28 final size:28
Alignment explanation
Indices: 527203--527303 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
527193 TGTTGGTATG
*
527203 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
527231 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
527259 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
527287 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
527304 ACAATTGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 526703 -- 527202
TCCGTTTATGAAATAGTTCAAGAAAGAGTCGTCTCATTTCCTTACTTCTTCGTTCCTTCGTCTTC
ATTCACTTAAACTGGTTCTGAACGCCGTAACACCCTCCACCGTACGTACCGTGCGGCCACTACAA
AATTGCTGATACACCAGCAGCTTGCTTATATGCTGATACACCAGCAGCTTGCTTTTGCTTATAGA
ATACGCTGACTAAAAAGAAGACGCTTACTCAAATCAAAGACTGACTAGGCTAGGCCAACGTCACG
TCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTACGTCACGAGCCATTTTCAAAGTCAAGGT
CAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAA
AGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 527304 -- 527803
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
Found at i:527465 original size:95 final size:98
Alignment explanation
Indices: 527287--527466 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
527277 TGTTTGTACA
* *
527287 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
527352 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
527386 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
527447 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
527467 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 526787 -- 527286
GAACGCCGTAACACCCTCCACCGTACGTACCGTGCGGCCACTACAAAATTGCTGATACACCAGCA
GCTTGCTTATATGCTGATACACCAGCAGCTTGCTTTTGCTTATAGAATACGCTGACTAAAAAGAA
GACGCTTACTCAAATCAAAGACTGACTAGGCTAGGCCAACGTCACGTCATGAGCAAAGCCCTACG
CTTTGCGAGTGCTTTGTACGTCACGAGCCATTTTCAAAGTCAAGGTCAGCGTACATGACTTTGCT
TTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTTTGGTTGGAACATC
AATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTG
GTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 527467 -- 527966
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
Found at i:527496 original size:43 final size:43
Alignment explanation
Indices: 527449--527647 Score: 213
Period size: 43 Copynumber: 4.9 Consensus size: 43
527439 CTGACCTTTC
*
527449 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
527492 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
527535 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * *
527568 CAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
527611 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
527648 TGACATACAA
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.02
38 21 0.17
39 3 0.02
41 1 0.01
43 86 0.68
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 526949 -- 527448
AGGCCAACGTCACGTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTACGTCACGAGCCATT
TTCAAAGTCAAGGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAA
AGCGAAGCATTCAAAGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCAT
ACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGC
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 527648 -- 528147
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:527505 original size:19 final size:19
Alignment explanation
Indices: 527478--527548 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
527468 TGGTAAGGTT
527478 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
527497 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
527521 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
527540 AGTCTTGAC
1 AGTCCTGAC
527549 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 526978 -- 527477
TACGCTTTGCGAGTGCTTTGTACGTCACGAGCCATTTTCAAAGTCAAGGTCAGCGTACATGACTT
TGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTTTGGTTGGAA
CATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTT
TTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 527549 -- 528048
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAG
Found at i:527529 original size:24 final size:24
Alignment explanation
Indices: 527453--527529 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
527443 CCTTTCAAGA
* *
527453 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
527477 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
527496 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
527520 CAGTCCTGAC
1 CAGTCCTGAC
527530 TGTGAAATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 526953 -- 527452
CAACGTCACGTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTACGTCACGAGCCATTTTCA
AAGTCAAGGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCG
AAGCATTCAAAGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAA
TTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTA
ATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 527530 -- 528029
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAG
Found at i:527761 original size:19 final size:19
Alignment explanation
Indices: 527694--527766 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
527684 CATTCTCATT
527694 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
527710 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
527734 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
527753 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
527767 CATTTTTGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.26
17 1 0.02
19 14 0.30
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.26
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 527194 -- 527693
GTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 527767 -- 528266
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTT
Found at i:527890 original size:43 final size:43
Alignment explanation
Indices: 527829--527956 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
527819 TTCCATCAAA
* * * *
527829 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
527872 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
527915 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
527957 GAGTACTAAT
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 4 0.05
43 76 0.95
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 527329 -- 527828
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 527957 -- 528456
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Found at i:527918 original size:24 final size:24
Alignment explanation
Indices: 527847--527956 Score: 87
Period size: 19 Copynumber: 5.0 Consensus size: 24
527837 CCTTTCAAGA
* *
527847 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
527871 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
527890 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* *
527914 CAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
527933 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
527957 GAGTACTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
19 17 0.27
20 5 0.08
21 9 0.14
22 10 0.16
23 6 0.09
24 17 0.27
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 527347 -- 527846
ACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 527957 -- 528456
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Found at i:528187 original size:43 final size:42
Alignment explanation
Indices: 528140--528292 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
528130 ACCTTTCAAG
528140 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
528183 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
528218 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
528259 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
528293 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 527640 -- 528139
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 528293 -- 528792
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
Found at i:528377 original size:248 final size:251
Alignment explanation
Indices: 528067--528570 Score: 707
Period size: 248 Copynumber: 2.0 Consensus size: 251
528057 TTTCCATTTT
528067 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
1 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
* *** * *
528132 CTTTCAAGACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGAAATACAGTCTTGACC
66 CTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCT-TGAAAGACAGTCTTGACC
* * * *
528195 -AG-AAGAATCAGTCCTGA-T-CAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
129 TAGTAAG-ATCAGTCCTGATTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
528256 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
193 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
*
528315 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCCTGA
1 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCCTGA
**
528379 CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
65 CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTGAAAGACAGTCTTGACC-
* * * *
528444 TTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAC
129 ---TAGTAAGATCAGTCCTGA--TT-AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAC
528509 TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
188 TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
528571 ACCTTTCAAA
Statistics
Matches: 225, Mismatches: 17, Indels: 18
0.87 0.07 0.07
Matches are distributed among these distances:
247 5 0.02
248 109 0.48
249 2 0.01
253 10 0.04
254 2 0.01
256 1 0.00
258 96 0.43
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (251 bp):
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTGAAAGACAGTCTTGACCTA
GTAAGATCAGTCCTGATTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
Left flanking sequence: Indices 527567 -- 528066
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTT
Right flanking sequence: Indices 528571 -- 529070
ACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTT
Found at i:528398 original size:19 final size:19
Alignment explanation
Indices: 528370--528445 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
528360 CTTCCATAAT
528370 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
528389 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
528412 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
528432 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
528446 TTGGTCAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 527870 -- 528369
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 528446 -- 528945
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGT
Found at i:528416 original size:24 final size:24
Alignment explanation
Indices: 528367--528431 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
528357 GTCCTTCCAT
528367 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
528388 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
528410 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
528432 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 527867 -- 528366
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 528432 -- 528931
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
Found at i:528503 original size:24 final size:24
Alignment explanation
Indices: 528432--528541 Score: 87
Period size: 19 Copynumber: 5.0 Consensus size: 24
528422 CCTTTCAAGA
* *
528432 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
528456 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
528475 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* *
528499 CAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
528518 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
528542 GAGTACTGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
19 17 0.27
20 5 0.08
21 9 0.14
22 10 0.16
23 6 0.09
24 17 0.27
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 527932 -- 528431
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 528542 -- 529041
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
Found at i:528533 original size:43 final size:43
Alignment explanation
Indices: 528369--528550 Score: 217
Period size: 43 Copynumber: 4.2 Consensus size: 43
528359 CCTTCCATAA
* ** * *
528369 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAG-G
* * *
528412 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
528455 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
528498 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
* *
528541 TGAGTACTGA
1 TCAGTCCTGA
528551 TGACATACAA
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 4 0.03
43 115 0.93
44 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 527869 -- 528368
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 528551 -- 529050
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTT
Found at i:528685 original size:16 final size:16
Alignment explanation
Indices: 528660--528690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
528650 TCATTCTCAT
528660 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
528676 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
528691 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 528160 -- 528659
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
ATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 528691 -- 529190
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
Found at i:528709 original size:24 final size:24
Alignment explanation
Indices: 528677--528757 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
528667 GACCTTTCAT
*
528677 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
528701 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
528720 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
528744 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
528758 AAGACAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 26 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 528177 -- 528676
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 528758 -- 529257
AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
Found at i:528728 original size:19 final size:23
Alignment explanation
Indices: 528677--528775 Score: 106
Period size: 19 Copynumber: 4.6 Consensus size: 23
528667 GACCTTTCAT
528677 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
528701 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
528720 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
528744 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
528763 AGTCTTGACCTTT
1 AGTCTTGACCTTT
528776 TTGGTAAGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 26 0.39
20 3 0.05
21 6 0.09
22 3 0.05
23 3 0.05
24 25 0.38
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (23 bp):
AGTCTTGACCTTTCCAAAGAATC
Left flanking sequence: Indices 528177 -- 528676
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 528776 -- 529275
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
Found at i:528734 original size:43 final size:43
Alignment explanation
Indices: 528661--528775 Score: 200
Period size: 43 Copynumber: 2.7 Consensus size: 43
528651 CATTCTCATT
*
528661 AGTCCTGACCTTTC---ATAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
528701 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
528744 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
528776 TTGGTAAGGT
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 14 0.20
43 57 0.80
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 528161 -- 528660
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 528776 -- 529275
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
Found at i:528791 original size:43 final size:43
Alignment explanation
Indices: 528715--528871 Score: 210
Period size: 43 Copynumber: 3.7 Consensus size: 43
528705 CTGACCTTTC
** * * **
528715 AAGACAGTCTTGACC-TTTCCAGAAGAATCAGTCCTGACCT-TTC
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGA-CTGTGA
* *
528758 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
528801 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
528844 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
528872 GAGTACTAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 2 0.02
43 94 0.92
44 6 0.06
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 528215 -- 528714
GATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 528872 -- 529371
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCC
Found at i:528814 original size:19 final size:19
Alignment explanation
Indices: 528787--528857 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
528777 TGGTAAGGTT
528787 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
528806 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
528830 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
528849 AGTCTTGAC
1 AGTCCTGAC
528858 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 528287 -- 528786
TACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 528858 -- 529357
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:529102 original size:43 final size:42
Alignment explanation
Indices: 529055--529207 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
529045 ACCTTTCAAG
529055 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
529098 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
529133 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
529174 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
529208 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 528555 -- 529054
ATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 529208 -- 529707
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGT
CCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTT
GATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
Found at i:529313 original size:19 final size:19
Alignment explanation
Indices: 529285--529355 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
529275 CTTCCATAAT
529285 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
529304 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
529322 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
529342 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
529356 TTGGTCAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 528785 -- 529284
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 529356 -- 529855
TTGGTCAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGG
TCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGA
Found at i:529506 original size:28 final size:29
Alignment explanation
Indices: 529463--529582 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
529453 GTTGATGGAA
529463 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
529491 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
529519 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
529547 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
529575 AATGGCAT
1 AATGGCAT
529583 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 528963 -- 529462
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 529583 -- 530082
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTCCATAATGAGTCCTGACCTGGTCAGACAAATCGTTCAAAGTGCTGAC
CAAAAGTTGAATGGAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATAC
AATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGG
AAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGGAAAG
Found at i:529700 original size:43 final size:43
Alignment explanation
Indices: 529652--529735 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
529642 CTGATCTTTC
* * * *
529652 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
529695 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
529736 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 529152 -- 529651
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 529736 -- 530235
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATA
ATGAGTCCTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCTT
CACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAG
CACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGA
AAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
Found at i:529795 original size:19 final size:16
Alignment explanation
Indices: 529754--529784 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
529744 CATTCTCATT
529754 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
529770 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
529785 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 529254 -- 529753
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 529785 -- 530284
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTCCATAATGAGTCCTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGT
TGAATGGAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAA
TTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTC
AGGACTCATTTCTTGAAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTG
Found at i:529853 original size:19 final size:21
Alignment explanation
Indices: 529829--529879 Score: 79
Period size: 19 Copynumber: 2.5 Consensus size: 21
529819 CATTCTCATT
*
529829 AGTCCTGACCTTTCCA-GA-G
1 AGTCCTGACCTTTCCATAATG
529848 AGTCCTGACCTTTCCATAATG
1 AGTCCTGACCTTTCCATAATG
529869 AGTCCTGACCT
1 AGTCCTGACCT
529880 GGTCAGACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 16 0.55
20 1 0.03
21 12 0.41
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (21 bp):
AGTCCTGACCTTTCCATAATG
Left flanking sequence: Indices 529329 -- 529828
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTATTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGAT
GGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGG
CATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATT
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAA
GACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTC
AAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 529880 -- 530379
GGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCTTCACAAAATGATATT
GACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATT
TGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTT
ATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTC
Found at i:530062 original size:22 final size:22
Alignment explanation
Indices: 530032--530096 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
530022 ATCAGTGACC
530032 TTATGGAAAGGTCAGGACTCAT
1 TTATGGAAAGGTCAGGACTCAT
* * *
530054 TTCTTGAAAGGTGAGGA--C-T
1 TTATGGAAAGGTCAGGACTCAT
*
530073 TTATGGAAAGGTCAAGACTCAT
1 TTATGGAAAGGTCAGGACTCAT
530095 TT
1 TT
530097 GTATGTCATC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 14 0.42
20 1 0.03
21 1 0.03
22 17 0.52
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
TTATGGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 529532 -- 530031
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAG
TCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCT
TGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGT
CCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGAC
CTTTCCATAATGAGTCCTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGG
AATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGA
TATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACC
Right flanking sequence: Indices 530097 -- 530596
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGAT
TCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
GGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
Found at i:530267 original size:19 final size:19
Alignment explanation
Indices: 530243--530302 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
530233 ACCTTACCAA
530243 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
530262 AAAGGTCAGGACTGAT-TTT
1 AAAGGTCAAGACTG-TCTTG
***
530281 TCTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
530300 AAA
1 AAA
530303 TCAGTACTGA
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 529743 -- 530242
TCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAAT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATAATGAGTC
CTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCTTCACAAAA
TGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGT
CAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGA
GGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 530303 -- 530802
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
Found at i:530275 original size:43 final size:43
Alignment explanation
Indices: 530105--530477 Score: 197
Period size: 43 Copynumber: 9.2 Consensus size: 43
530095 TTGTATGTCA
* * * *
530105 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-G
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
* * *
530148 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* * * * *
530186 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACA-G
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGG
530224 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* ** *
530267 TCAGGACTGA-TTTTTC----TGGTCAAGACTGTCTTGAAA--
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* ***** * * *
530303 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGA
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* * * * **
530346 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCAAGG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
530384 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* ***
530427 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
530470 TCAGGACT
1 TCAGGACT
530478 CATTCTTCTG
Statistics
Matches: 253, Mismatches: 49, Indels: 56
0.71 0.14 0.16
Matches are distributed among these distances:
33 10 0.04
35 1 0.00
36 9 0.04
37 12 0.05
38 62 0.25
39 6 0.02
41 18 0.07
42 7 0.03
43 122 0.48
44 6 0.02
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 529605 -- 530104
TTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCAT
AATGAGTCCTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCT
TCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 530478 -- 530977
CATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
AAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:530427 original size:19 final size:19
Alignment explanation
Indices: 530403--530477 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
530393 ACCTTACCAA
530403 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
530422 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
530446 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
530465 AAAGGTCAGGACT
1 AAAGGTCAAGACT
530478 CATTCTTCTG
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 529903 -- 530402
CTGACCAAAAGTTGAATGGAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGG
CATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCT
TATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 530478 -- 530977
CATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
AAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:530431 original size:81 final size:80
Alignment explanation
Indices: 530127--530445 Score: 407
Period size: 81 Copynumber: 4.0 Consensus size: 80
530117 TTATCAAAAA
* *
530127 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--T
1 GGTCAAGACTGTATTTC-AAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGGT
530187 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
* *
530203 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCA-AGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGGT
*
530268 CAGGACTGATTTTTCT
65 CAGGACTGATTCTTCT
* * * * ***** *
530284 GGTCAAGACTGT-CTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATC
1 GGTCAAGACTGTATTTCAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGGTC
530348 AGGACTGATTCTTCT
66 AGGACTGATTCTTCT
* * *
530363 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAA-GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGGT
530428 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
530444 GG
1 GG
530446 AAAGGTCAAG
Statistics
Matches: 204, Mismatches: 31, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
75 1 0.00
76 50 0.25
77 2 0.01
79 63 0.31
80 7 0.03
81 81 0.40
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (80 bp):
GGTCAAGACTGTATTTCAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGGTC
AGGACTGATTCTTCT
Left flanking sequence: Indices 529627 -- 530126
TAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATAATGAGTCCTGACCTGGTCAGA
CAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCTTCACAAAATGATATTGACTCTT
TTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGA
CCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 530446 -- 530945
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
TCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAA
Found at i:530448 original size:24 final size:24
Alignment explanation
Indices: 530421--530505 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
530411 AGACTGTCTT
530421 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
530445 GAAAGGTCAAGACTG--TC-T-T-
1 GAAAGGTCAGGACTGATTCTTCTG
*
530464 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
530488 GAAAGGTCAGGACTGATT
1 GAAAGGTCAGGACTGATT
530506 ATGGAAGGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 529921 -- 530420
GAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTG
ATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACT
CATTTCTTGAAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 530506 -- 531005
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTG
Found at i:530483 original size:43 final size:42
Alignment explanation
Indices: 530243--530502 Score: 247
Period size: 43 Copynumber: 6.3 Consensus size: 42
530233 ACCTTACCAA
*
530243 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
* *
530284 ---GGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TTTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTG
* * *
530322 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
* * ** * **
530363 ---GGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--CTG
530403 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-G
*
530446 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-G
*
530489 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
530503 ATTATGGAAG
Statistics
Matches: 178, Mismatches: 24, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
36 9 0.05
37 6 0.03
38 45 0.25
39 1 0.01
41 19 0.11
42 4 0.02
43 91 0.51
44 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 529743 -- 530242
TCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAAT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCATAATGAGTC
CTGACCTGGTCAGACAAATCGTTCAAAGTGCTGACCAAAAGTTGAATGGAATGATCTTCACAAAA
TGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGT
CAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGA
GGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 530503 -- 531002
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTC
Found at i:530590 original size:19 final size:19
Alignment explanation
Indices: 530563--530633 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
530553 TATCAAAAAG
530563 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
530582 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
530605 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
530625 GTCAGGACT
1 GTCAAGACT
530634 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 530063 -- 530562
GGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 530634 -- 531133
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAG
Found at i:530610 original size:43 final size:43
Alignment explanation
Indices: 530549--531018 Score: 228
Period size: 43 Copynumber: 11.0 Consensus size: 43
530539 ATTAGTACTC
*
530549 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* *
530592 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* *
530635 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
* * ** *
530678 ATTCTTCT-GGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
* * ** * *
530721 ATTCTTCT-GGAAAGGTCAAGA----CTATGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGAC---TG
** * * *** ** * * *
530764 AGAATGATTGAGGAATGACCATCAAGAC--TCATTTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACTGTC-TTTCAAAG---TCAGGACTG
*
530815 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * * *
530858 ACCTTACCAAAAAGATCAAGACTATC--T--GA-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * * * *
530896 A--TTCTTC----TGGTCAATACTGTATTTCACAGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
*
530934 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * *
530977 ACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
531019 TTTGATGGAA
Statistics
Matches: 334, Mismatches: 60, Indels: 66
0.73 0.13 0.14
Matches are distributed among these distances:
33 9 0.03
35 1 0.00
36 2 0.01
37 2 0.01
38 19 0.06
39 4 0.01
40 16 0.05
41 1 0.00
42 9 0.03
43 224 0.67
44 4 0.01
45 8 0.02
46 5 0.01
47 5 0.01
49 9 0.03
50 2 0.01
51 4 0.01
52 4 0.01
54 6 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
Left flanking sequence: Indices 530049 -- 530548
CTCATTTCTTGAAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 531019 -- 531518
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
TCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Found at i:530690 original size:24 final size:24
Alignment explanation
Indices: 530645--530743 Score: 110
Period size: 19 Copynumber: 4.5 Consensus size: 24
530635 ACCTTACCAA
530645 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
530664 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
530688 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
530707 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
530731 AAAGGTCAAGACT
1 AAAGGTCAAGACT
530744 ATGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 2 0.03
24 27 0.41
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (24 bp):
AAAGGTCAAGACTGATTCTTCTGG
Left flanking sequence: Indices 530145 -- 530644
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTTTTCTGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTT
GAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 530744 -- 531243
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAG
GACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAG
GACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
Found at i:530751 original size:16 final size:16
Alignment explanation
Indices: 530730--530760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
530720 GATTCTTCTG
530730 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
530746 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
530761 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 530230 -- 530729
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGA
AAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 530761 -- 531260
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAG
TCAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
Found at i:530956 original size:24 final size:24
Alignment explanation
Indices: 530924--531000 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
530914 GTATTTCACA
*
530924 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
530948 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
530967 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
530991 GTCAAGACTG
1 GTCAAGACTG
531001 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 530424 -- 530923
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 531001 -- 531500
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
Found at i:531193 original size:16 final size:16
Alignment explanation
Indices: 531172--531203 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
531162 AGGACTTGAT
531172 TGAAAGGTCAAGACTA
1 TGAAAGGTCAAGACTA
*
531188 TGAAAGGTCAGGACTA
1 TGAAAGGTCAAGACTA
531204 ATGAGAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTA
Left flanking sequence: Indices 530672 -- 531171
GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTGAT
Right flanking sequence: Indices 531204 -- 531703
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
Found at i:531312 original size:43 final size:42
Alignment explanation
Indices: 531249--531669 Score: 255
Period size: 43 Copynumber: 10.2 Consensus size: 42
531239 TTGTATGTCA
* * *
531249 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
531292 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** *** * *
531330 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
531373 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
531416 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
531457 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
531500 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
531538 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
531576 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
531619 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
531662 TCAGGACT
1 TCAGGACT
531670 GATTCTTCTT
Statistics
Matches: 289, Mismatches: 65, Indels: 48
0.72 0.16 0.12
Matches are distributed among these distances:
33 11 0.04
35 1 0.00
37 4 0.01
38 38 0.13
39 11 0.04
40 1 0.00
41 29 0.10
42 16 0.06
43 175 0.61
44 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 530749 -- 531248
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 531670 -- 532169
GATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTAC
TTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATG
GATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAAC
CATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTG
CGTGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCA
Found at i:531386 original size:81 final size:82
Alignment explanation
Indices: 531268--531507 Score: 279
Period size: 81 Copynumber: 2.9 Consensus size: 82
531258 ACCTTATCAA
* *
531268 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-
1 AAAGGTCAAGACTGT-TTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAG
531330 TCAGGACTGATTCTTCTGG
64 TCAGGACTGATTCTTCTGG
*
531349 AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGT-TTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA
* *
531414 GGTCAGGACTGATTTTTCTTG
63 -GTCAGGACTGATTCTTCTGG
* * * * * * *
531435 AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 AAAGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TTGA-AG
531500 TCAGGACT
64 TCAGGACT
531508 AACCTTACCA
Statistics
Matches: 139, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
80 1 0.01
81 53 0.38
82 2 0.01
84 45 0.32
85 6 0.04
86 32 0.23
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (82 bp):
AAAGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
AGGACTGATTCTTCTGG
Left flanking sequence: Indices 530768 -- 531267
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 531508 -- 532007
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAAC
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTG
ACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCT
Found at i:531416 original size:19 final size:19
Alignment explanation
Indices: 531392--531456 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
531382 ACCTTACCAA
531392 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
531411 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
531435 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
531454 AAA
1 AAA
531457 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 530892 -- 531391
ACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTT
GATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGT
CAGGAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 531457 -- 531956
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
CAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
AACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTA
CTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGA
Found at i:531589 original size:76 final size:81
Alignment explanation
Indices: 531478--531671 Score: 247
Period size: 76 Copynumber: 2.4 Consensus size: 81
531468 CTTATCAAAA
*
531478 AGGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-T
1 AGGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGT
531539 CAGGACTGATTCTTC-T
65 CAGGACTGATTCTTCTT
* *
531555 -GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTG-AA-G
531619 TCAGGACTGATTCTTCTT
64 TCAGGACTGATTCTTCTT
**
531637 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ---AGGTCAAGACTGTCTTTCAAGGTCAGGACTGA
531672 TTCTTCTTGA
Statistics
Matches: 101, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
75 1 0.01
76 51 0.50
77 2 0.02
79 1 0.01
81 16 0.16
82 1 0.01
86 29 0.29
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (81 bp):
AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTC
AGGACTGATTCTTCTT
Left flanking sequence: Indices 530978 -- 531477
CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTGATT
GAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAA
Right flanking sequence: Indices 531672 -- 532171
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTT
TCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
CTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGA
TAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCA
TCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTGCG
TGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAAG
Found at i:531619 original size:19 final size:19
Alignment explanation
Indices: 531595--531670 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
531585 ACCTTACCAA
531595 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
531614 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
531638 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
531657 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
531671 ATTCTTCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 531095 -- 531594
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGG
TGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGAAAGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 531671 -- 532170
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGG
ATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACC
ATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTGC
GTGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAA
Found at i:531638 original size:24 final size:23
Alignment explanation
Indices: 531609--531785 Score: 124
Period size: 24 Copynumber: 7.8 Consensus size: 23
531599 GTCAAGACTG
531609 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGA-TCT
*
531633 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATCT
531652 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGA-TCT
*
531676 TCTTGAAAGGTCAGGACTCA--T
1 TCTTGAAAGGTCAGGACTGATCT
* * * *
531697 TATGGAAAAGTCAGGAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGG-A---C-TGA-TCT
*
531726 T-TTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATCT
*
531744 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGA-TCT
531768 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
531786 CATTGCAATT
Statistics
Matches: 120, Mismatches: 14, Indels: 38
0.70 0.08 0.22
Matches are distributed among these distances:
18 1 0.01
19 33 0.28
21 13 0.11
22 1 0.01
23 1 0.01
24 56 0.47
25 1 0.01
26 1 0.01
27 1 0.01
28 10 0.08
29 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATCT
Left flanking sequence: Indices 531109 -- 531608
GGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTGATTG
AAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 531786 -- 532285
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATC
CAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGA
TCCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTT
GCGAGTGCTTTTTGCGTGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAAGCTGT
GCACGCTCAGAGAAGAGGATCGCCTTGACTACCACGCTCCGCGGGCCCGTCACTTCGTTCGTACC
TTTTTGGCTGAGGCTAGCAACAAAACAAGGAAGAGTGCAAAATTC
Found at i:531670 original size:43 final size:43
Alignment explanation
Indices: 531330--531785 Score: 322
Period size: 43 Copynumber: 10.7 Consensus size: 43
531320 GACTATCTGA
* * * *
531330 TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACA-G
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT-CTTGAAAGG
* ***
531373 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
*
531416 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* * * ** * *
531457 TCAGTACTGA-CCTTATCAAAAAGGTCAAGACTGTCTTTCACA-G
1 TCAGGACTGATTCTTCT-TGAAAGGTCAAGACTGTC-TTGAAAGG
** *** * *
531500 TCAGGACT-AACCTTACCAAAAAGATCAAGACTATC-TG--A--
1 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
**
531538 TCAGGACTGATTCTTC-T----GGTCAAGACTGTCTTTCAAGG
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* ***
531576 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
531619 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* * *
531662 TCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT-TATGGAAAAG
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACT-GTCT-T-GAAAGG
* *
531707 TCAGGAAGGTCAGGACTCTT-TTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGG-A---C-TGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* *
531754 TCAGGACTCATTCTTCTTGAAAGGTCAGGACT
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACT
531786 CATTGCAATT
Statistics
Matches: 330, Mismatches: 52, Indels: 62
0.74 0.12 0.14
Matches are distributed among these distances:
33 11 0.03
34 1 0.00
36 1 0.00
37 3 0.01
38 20 0.06
39 5 0.02
40 3 0.01
41 26 0.08
42 17 0.05
43 189 0.57
44 7 0.02
45 10 0.03
46 2 0.01
47 10 0.03
48 2 0.01
49 17 0.05
50 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (43 bp):
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 530830 -- 531329
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTGAGGACTTGATTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 531786 -- 532285
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATC
CAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGA
TCCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTT
GCGAGTGCTTTTTGCGTGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAAGCTGT
GCACGCTCAGAGAAGAGGATCGCCTTGACTACCACGCTCCGCGGGCCCGTCACTTCGTTCGTACC
TTTTTGGCTGAGGCTAGCAACAAAACAAGGAAGAGTGCAAAATTC
Found at i:531736 original size:19 final size:19
Alignment explanation
Indices: 531712--531786 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
531702 AAAAGTCAGG
531712 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
* * *
531731 AAGGTCAAGACTGTCTTGA
1 AAGGTCAGGACTCTTTTGA
531750 AAGGTCAGGACTCATTCTTCTTGA
1 AAGGTCAGGA--C--TCTT-TTGA
531774 AAGGTCAGGACTC
1 AAGGTCAGGACTC
531787 ATTGCAATTG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
19 25 0.56
20 2 0.04
21 1 0.02
22 1 0.02
23 2 0.04
24 14 0.31
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (19 bp):
AAGGTCAGGACTCTTTTGA
Left flanking sequence: Indices 531212 -- 531711
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 531787 -- 532286
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCC
AAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGAT
CCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTG
CGAGTGCTTTTTGCGTGAAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAAGCTGTG
CACGCTCAGAGAAGAGGATCGCCTTGACTACCACGCTCCGCGGGCCCGTCACTTCGTTCGTACCT
TTTTGGCTGAGGCTAGCAACAAAACAAGGAAGAGTGCAAAATTCA
Found at i:531877 original size:20 final size:20
Alignment explanation
Indices: 531852--531933 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
531842 TGACAAACAA
531852 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
531872 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
531900 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
531920 ATGCCATTAGTACT
1 ATGCCATTAGTACT
531934 CACTGTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 531352 -- 531851
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAA
Right flanking sequence: Indices 531934 -- 532433
CACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATA
ATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATC
AAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTGCGTG
AAACTACGAAAGAGAGATGTGCCTCAGGCGGCATGCAAGCAAGCTGTGCACGCTCAGAGAAGAGG
ATCGCCTTGACTACCACGCTCCGCGGGCCCGTCACTTCGTTCGTACCTTTTTGGCTGAGGCTAGC
AACAAAACAAGGAAGAGTGCAAAATTCATTATCATTCCGGCATGAACCGCTCATCTGACATTCCA
TTCCCAACCTCTACCCCCTTTCCTTTGGATCTCTCTTCCTCACTCAGTGATCAGTCCCAGCTGGA
ATTTTGATAATGTTCATTCATTCTTCAGACTTCTTTTTTCGAGCT
Found at i:531912 original size:28 final size:27
Alignment explanation
Indices: 531872--531950 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 27
531862 TACTTTCCAT
531872 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACTCACTGT-CAAACAA
*
531900 ATGCCATTAGTACT---T-TC---CAT
1 ATGCCATTAGTACTCACTGTCAAACAA
531920 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGT-CAAACAA
531948 ATG
1 ATG
531951 TCATGAGTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 16
0.69 0.03 0.27
Matches are distributed among these distances:
20 16 0.39
23 2 0.05
24 2 0.05
25 2 0.05
28 19 0.46
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTGTCAAACAA
Left flanking sequence: Indices 531372 -- 531871
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT
TATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 531951 -- 532450
TCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTT
TGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACCTTGATGTCCTGA
AAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTGCGTGAAACTACGAAAGAGAGA
TGTGCCTCAGGCGGCATGCAAGCAAGCTGTGCACGCTCAGAGAAGAGGATCGCCTTGACTACCAC
GCTCCGCGGGCCCGTCACTTCGTTCGTACCTTTTTGGCTGAGGCTAGCAACAAAACAAGGAAGAG
TGCAAAATTCATTATCATTCCGGCATGAACCGCTCATCTGACATTCCATTCCCAACCTCTACCCC
CTTTCCTTTGGATCTCTCTTCCTCACTCAGTGATCAGTCCCAGCTGGAATTTTGATAATGTTCAT
TCATTCTTCAGACTTCTTTTTTCGAGCTGTCCTAGCATTAGTATG
Found at i:531968 original size:48 final size:48
Alignment explanation
Indices: 531836--531950 Score: 205
Period size: 48 Copynumber: 2.4 Consensus size: 48
531826 TTGTATGTCT
531836 CTCACT-TGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
1 CTCACTGT-ACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
*
531884 CTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
1 CTCACTGTACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
531932 CTCACTGTACAAACAAATG
1 CTCACTGTACAAACAAATG
531951 TCATGAGTGC
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
48 63 0.98
49 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (48 bp):
CTCACTGTACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTA
Left flanking sequence: Indices 531336 -- 531835
CTGATTCTTCTGGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCT
Right flanking sequence: Indices 531951 -- 532450
TCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTT
TGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACCTTGATGTCCTGA
AAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTGCGTGAAACTACGAAAGAGAGA
TGTGCCTCAGGCGGCATGCAAGCAAGCTGTGCACGCTCAGAGAAGAGGATCGCCTTGACTACCAC
GCTCCGCGGGCCCGTCACTTCGTTCGTACCTTTTTGGCTGAGGCTAGCAACAAAACAAGGAAGAG
TGCAAAATTCATTATCATTCCGGCATGAACCGCTCATCTGACATTCCATTCCCAACCTCTACCCC
CTTTCCTTTGGATCTCTCTTCCTCACTCAGTGATCAGTCCCAGCTGGAATTTTGATAATGTTCAT
TCATTCTTCAGACTTCTTTTTTCGAGCTGTCCTAGCATTAGTATG
Found at i:533082 original size:29 final size:29
Alignment explanation
Indices: 533036--533121 Score: 129
Period size: 30 Copynumber: 3.0 Consensus size: 29
533026 TGCCGGTGTG
*
533036 ACAG-TCTGCCGTTCTTGAAGGCGGCCGC
1 ACAGATCTGCCGTTCTTGAAGGCAGCCGC
*
533064 ACTGATCTGCCGTTCTTGAAGGCAGCCAGC
1 ACAGATCTGCCGTTCTTGAAGGCAGCC-GC
*
533094 ACAGATCCGCCGTTCTTGAAGGCAGCCG
1 ACAGATCTGCCGTTCTTGAAGGCAGCCG
533122 GATGGCCTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
28 3 0.06
29 22 0.42
30 27 0.52
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (29 bp):
ACAGATCTGCCGTTCTTGAAGGCAGCCGC
Left flanking sequence: Indices 532536 -- 533035
CGTTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGACCTATCACTTGTTCCAAAAGGTC
GATCTGATACTTAGTTAACTCATTCATCTTGATGTTCTCACTTATACCCAATCGATAACGAACCT
GAATGGCTTTTTTAGGTCCAATTCCTGCCATTTTGGTTGAGGCAATTCTGACTTTTTCATCGGGA
ACTGATCTAGCTCCTCCTATATATGACATTCTTTATCTGTCCTCTTCCCCGTATTCTCGGCTGGT
TCTGAACTTCATGGTACCGGGTCTAATGGATAGCCACGGGAAGGAACGGGAATCTTTCATGTCTG
AAAGGGCGACGTTCAGGCAATGTTTGATTACCTACGAAAAAACAACCTCTTTCCTTAGCTGAGAT
AAGGTATCAGGTAGGAAATGTGGTGAAGAATCATGATTGGGTTTGAGTTTCCATCATTGTTTGGG
AGAGTGATTTTCGCACTGATCAGGATCGCCGTTCCTGCCGGTGTG
Right flanking sequence: Indices 533122 -- 533621
GATGGCCTCCCCCCAGCCTGACCCTGGAACACTTGAGTTCAACTCCCTTCAACAACCTGCTTTTG
AAACAGGCCAAACTGATAACAGCTCGAGGGGGCGAGCGCTGAACCCTACCCTTACGGTAGGTTTC
TTGAAATTCATTTGCCTTTTCGAGAAGGCAGCAATTCAGACCCCCACGCTGAGAGAGACAGGCTC
TGGGAAAGACACATTTCAGGGCCACTATCTATTCCCCTATTTAGGGGTGAGCGCGGTGCCGGCAT
CAATAGGGGCTTTGGAAGTCAAGGTGGTTTCCTTTCTGCGATCCGCTGGATGACAGGGACGTAGT
TTGGTTCCAGTCTCAGGTTCTTCTCTTTGGTCTCCTCGGCTGTCTGACTCTTCGTTTCCTTTTTC
TTTCCATTTGTCGACGATCAAACGTCAGATTTGATGCCTGAAATGGAATTCGAAGTAACAATAAC
AATCAAAATCGACTATACTGATCGTTAACCAAAGAAAGGCTTGGG
Found at i:539319 original size:16 final size:16
Alignment explanation
Indices: 539298--539328 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
539288 AGGACCCTTT
539298 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
539314 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
539329 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 538798 -- 539297
TTCCATTCTGATCGACCTCTTATACGAAATCGAAAGAAGATGCGACGATTTCTTCCAGGAAATCC
CAGACTATTCACACTATTCCTTCTTTTCTATCGAATTTGTCATAACCACTACCTACACTCCACGA
AATTGTGCACCACAGGAGCTAATGAATAGACCCGCGATACCATAGAAAGACATCACGATCCCTTG
TGGAAACCCTATAGCAAAAATGATTTGCTGAACTGGAAGTTTCAACCTCCTAGTCAACCTAAAAA
TACAGGCCCAAACGTCACGTTCTTAGATTAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATGCT
GAAAGAAGGGAAAAGGTACATAGTGAATCTCATTTTGTCTGAATCAGCCCTACGCTTTGCGAGTG
CTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 539329 -- 539828
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACTATACCAAAAA
GATGCCATTTTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACAACCAATTGTATGCCATT
AGTGTTTCATTGAAGAGAAAGACAATTGCAATGACCATCAAACCTTGATCCCTTCTTTCAGAAAG
CACTCGCTTTTCAGTGCTCATGACGTTGGGTAAGCCCTCACCCAG
Found at i:539395 original size:43 final size:42
Alignment explanation
Indices: 539347--539444 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
539337 TGATTGAGGA
* * * *
539347 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
539390 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
539432 AAAGATCAGAACT
1 AAAG-TCAGAACT
539445 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 538847 -- 539346
TTCTTCCAGGAAATCCCAGACTATTCACACTATTCCTTCTTTTCTATCGAATTTGTCATAACCAC
TACCTACACTCCACGAAATTGTGCACCACAGGAGCTAATGAATAGACCCGCGATACCATAGAAAG
ACATCACGATCCCTTGTGGAAACCCTATAGCAAAAATGATTTGCTGAACTGGAAGTTTCAACCTC
CTAGTCAACCTAAAAATACAGGCCCAAACGTCACGTTCTTAGATTAGCAAAGCCCAAAAAGCACT
CGCAACTTTGAATGCTGAAAGAAGGGAAAAGGTACATAGTGAATCTCATTTTGTCTGAATCAGCC
CTACGCTTTGCGAGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATG
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 539445 -- 539944
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATGCCATTAGTGCTGACCATACAACC
AATTGTATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCAATGACCATCAAACCTTGATCC
CTTCTTTCAGAAAGCACTCGCTTTTCAGTGCTCATGACGTTGGGTAAGCCCTCACCCAGAGTCTG
AGCGTGACGATGTCGATTAAACAGTGAACTCCCACGTAACCTGTAGGCAAGGATCAAGTCCGGAC
CCCTATGAGATCGTCAGCTTTAAACATCCGACCGTACTTATGGAA
Found at i:539523 original size:28 final size:28
Alignment explanation
Indices: 539500--539619 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
539490 TGACAATTGT
539500 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
539528 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
539556 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
539584 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
539612 ATGCCATT
1 ATGCCATT
539620 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 539000 -- 539499
CCTATAGCAAAAATGATTTGCTGAACTGGAAGTTTCAACCTCCTAGTCAACCTAAAAATACAGGC
CCAAACGTCACGTTCTTAGATTAGCAAAGCCCAAAAAGCACTCGCAACTTTGAATGCTGAAAGAA
GGGAAAAGGTACATAGTGAATCTCATTTTGTCTGAATCAGCCCTACGCTTTGCGAGTGCTTTCTG
AAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 539620 -- 540119
TTCCATCAACAATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATGCCA
TTAGTGCTGACCATACAACCAATTGTATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCAA
TGACCATCAAACCTTGATCCCTTCTTTCAGAAAGCACTCGCTTTTCAGTGCTCATGACGTTGGGT
AAGCCCTCACCCAGAGTCTGAGCGTGACGATGTCGATTAAACAGTGAACTCCCACGTAACCTGTA
GGCAAGGATCAAGTCCGGACCCCTATGAGATCGTCAGCTTTAAACATCCGACCGTACTTATGGAA
TTTGTTGAGTTTTTCTTTCCGGCCGGGTCTAAAGACGACCGCTGGAGGGTCCAACAATTCGACAA
CGCCAACGTCGTAACTACTCGACGCTCTGCATACCACGAGACGTACTGAACGCAGGCCTTGACCC
GGAAGGACAAGCGCTCGAAAATCTCGATGCTGTCTTCGTCTAAGC
Found at i:545424 original size:16 final size:16
Alignment explanation
Indices: 545403--545433 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
545393 AGGACCCTTT
545403 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
545419 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
545434 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 544903 -- 545402
TAATGAGCTCCTTGGGGTGATAACAGAAGATAATCTTGGCTACTCACCTCCCCGCTTCCCTGATT
CCTAATGGACTACGAGGACCCTAGGACGACGGACTCTGAGAAAGAAGGATGACCGGATGGCCCGG
AAAGAATGTCTGACTTCCTGGCTTTGACTCTTTCCTGTGCTTACTAATGGAAGCACAGGACCGAC
TCTGAGTAGAAAGTATAGCGCCTTTGTCCTCTAACAAACAGAAAGAGGAAAGCCCCAAAAGGAAA
GACTGATTAACAGACAGAGAGGGAGGAGATTGACTAGAAGCAGAGAGCGCATGTGCATTGGCTAA
AGGATCAAAGCACTCGCAACTTTCAATGGCAAGTCACGAGCAAAGCCCAAAAAGCACTCGCAACT
TTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTTATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 545434 -- 545933
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
Found at i:545500 original size:43 final size:42
Alignment explanation
Indices: 545452--545549 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
545442 TGATTGAGGA
* * * *
545452 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
545495 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
545537 AAAGATCAGAACT
1 AAAG-TCAGAACT
545550 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 544952 -- 545451
CCCCGCTTCCCTGATTCCTAATGGACTACGAGGACCCTAGGACGACGGACTCTGAGAAAGAAGGA
TGACCGGATGGCCCGGAAAGAATGTCTGACTTCCTGGCTTTGACTCTTTCCTGTGCTTACTAATG
GAAGCACAGGACCGACTCTGAGTAGAAAGTATAGCGCCTTTGTCCTCTAACAAACAGAAAGAGGA
AAGCCCCAAAAGGAAAGACTGATTAACAGACAGAGAGGGAGGAGATTGACTAGAAGCAGAGAGCG
CATGTGCATTGGCTAAAGGATCAAAGCACTCGCAACTTTCAATGGCAAGTCACGAGCAAAGCCCA
AAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTT
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 545550 -- 546049
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
Done.