Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 16 of 20
Found at i:488016 original size:19 final size:19
Alignment explanation
Indices: 487992--488056 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
487982 ACCTTACCAA
487992 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
488011 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
488035 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
488054 AAA
1 AAA
488057 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 487492 -- 487991
GAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGA
CAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTC
ACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
GAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 488057 -- 488556
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
GAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTG
Found at i:488187 original size:76 final size:79
Alignment explanation
Indices: 488079--488237 Score: 261
Period size: 76 Copynumber: 2.0 Consensus size: 79
488069 TTATCAAAAA
488079 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
488141 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* *
488155 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
488220 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
488236 GG
1 GG
488238 AAAGGTCAAG
Statistics
Matches: 76, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
76 54 0.71
77 2 0.03
79 1 0.01
81 19 0.25
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 487579 -- 488078
CAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAG
GACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 488238 -- 488737
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGAAGGAC
AGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTAGTACTCACTGT
ACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
Found at i:488202 original size:203 final size:203
Alignment explanation
Indices: 487853--488259 Score: 769
Period size: 203 Copynumber: 2.0 Consensus size: 203
487843 TTTGTATGTC
487853 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
*
487918 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
* *
487983 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
488048 GTCTTGAA
196 GTCTTGAA
*
488056 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
*
488121 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
488186 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
488251 GTCTTGAA
196 GTCTTGAA
488259 A
1 A
488260 GGTCAGGACT
Statistics
Matches: 199, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
203 199 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (203 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAA
Left flanking sequence: Indices 487353 -- 487852
GTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCAATT
GTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTC
TTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACA
TGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTC
Right flanking sequence: Indices 488260 -- 488759
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTC
TTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCC
ATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGG
ACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACT
CACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
Found at i:488219 original size:19 final size:19
Alignment explanation
Indices: 488195--488269 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
488185 ACCTTACCAA
488195 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
488214 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
488238 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
488257 AAAGGTCAGGACT
1 AAAGGTCAAGACT
488270 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 487695 -- 488194
TAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACC
AAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
CTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 488270 -- 488769
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACT
CTTTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACA
ATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCA
AAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
Found at i:488250 original size:119 final size:117
Alignment explanation
Indices: 487952--488226 Score: 309
Period size: 127 Copynumber: 2.2 Consensus size: 117
487942 TGATTCTTCT
* * * * *
487952 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--T
* * * * *
488017 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
61 CAGGACTGATTCTTC-T----GGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAAAAA
*
488079 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
*
488144 CTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
66 CTGATTCTTCTGGTCAAGACTGTC-TTCA-AATCAGGACTAACCTTACCAAAAA
*
488198 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
488227 GATTCTTCTG
Statistics
Matches: 133, Mismatches: 12, Indels: 14
0.84 0.08 0.09
Matches are distributed among these distances:
117 13 0.10
118 7 0.05
119 42 0.32
121 1 0.01
122 15 0.11
124 1 0.01
126 2 0.02
127 52 0.39
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (117 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTCTTCAAATCAGGACTAACCTTACCAAAAA
Left flanking sequence: Indices 487452 -- 487951
CTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAA
GACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 488227 -- 488726
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCT
TATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACA
AATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTA
GTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGA
AAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
Found at i:488275 original size:43 final size:42
Alignment explanation
Indices: 487871--488293 Score: 246
Period size: 43 Copynumber: 10.4 Consensus size: 42
487861 TCACCTTATC
* * ** *
487871 AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTTACC
1 AAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CT
* *
487914 AAAAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT
* * * * *
487952 -----GGTCAAGACTGTATTTCACAGTCAGGACTGA-CCTTACC
1 AAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGATTCTT-CT
*
487990 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
1 AAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCT
** * * *
488033 TGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGA-CCTTAT
1 AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT
* * ** *
488073 CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTTACC
1 -AAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CT
* *
488117 AAAAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT
* * ** *
488155 -----GGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTTACC
1 AAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CT
488193 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCT
** *
488236 GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCT
** *
488279 TGAAAGGTCAGGACT
1 AAAAAGGTCAAGACT
488294 CATTATGGAA
Statistics
Matches: 294, Mismatches: 53, Indels: 66
0.71 0.13 0.16
Matches are distributed among these distances:
33 21 0.07
35 2 0.01
37 9 0.03
38 38 0.13
39 10 0.03
40 3 0.01
41 27 0.09
42 13 0.04
43 165 0.56
44 6 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (42 bp):
AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 487371 -- 487870
GAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCAATTGTATGCCTTCAAGAATTG
CACAATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACC
TGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCT
TTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCA
AAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
Right flanking sequence: Indices 488294 -- 488793
CATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTA
TGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
Found at i:488294 original size:24 final size:24
Alignment explanation
Indices: 488209--488297 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
488199 GTCAAGACTG
*
488209 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
488233 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
488252 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
488276 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
488298 ATGGAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 1 0.02
23 1 0.02
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 487709 -- 488208
CAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 488298 -- 488797
ATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGT
ATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTAGTACTC
ACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTC
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
Found at i:488322 original size:30 final size:28
Alignment explanation
Indices: 488282--488340 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
488272 TTCTTCTTGA
488282 AAGGTCAGGACTCATTATGGAAAAGTCAGG
1 AAGGTCAGGACTC-TT-TGGAAAAGTCAGG
* * *
488312 AAGGTGAGGACTCTTTTGAAAGGTCAGG
1 AAGGTCAGGACTCTTTGGAAAAGTCAGG
488340 A
1 A
488341 CTCTGAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
29 2 0.08
30 12 0.46
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (28 bp):
AAGGTCAGGACTCTTTGGAAAAGTCAGG
Left flanking sequence: Indices 487782 -- 488281
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
Right flanking sequence: Indices 488341 -- 488840
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTG
AAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAG
GTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
Found at i:488349 original size:16 final size:16
Alignment explanation
Indices: 488328--488358 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
488318 AGGACTCTTT
488328 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
488344 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
488359 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 487828 -- 488327
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTT
Right flanking sequence: Indices 488359 -- 488858
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTA
TGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
Found at i:488417 original size:19 final size:19
Alignment explanation
Indices: 488393--488458 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
488383 AGATTCCATA
488393 CAGGACTCTTTTGAAAGGT
1 CAGGACTCTTTTGAAAGGT
* * *
488412 CAGGACTCCTTATGGAAGGA
1 CAGGACT-CTTTTGAAAGGT
*
488432 CAGGACCCTTTTGAAAGGT
1 CAGGACTCTTTTGAAAGGT
488451 CAGGACTC
1 CAGGACTC
488459 ATGACAATTG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 23 0.61
20 15 0.39
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (19 bp):
CAGGACTCTTTTGAAAGGT
Left flanking sequence: Indices 487893 -- 488392
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATA
Right flanking sequence: Indices 488459 -- 488958
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACC
ATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
Found at i:488493 original size:28 final size:28
Alignment explanation
Indices: 488470--488652 Score: 203
Period size: 28 Copynumber: 6.6 Consensus size: 28
488460 TGACAATTGT
*
488470 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
488498 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
488526 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
488554 TTG-TA-T-GTCTCTCACTTGACAAACAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
**
488580 ATGCCATTAGTACTCACTTGACAAACCA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* **
488608 ATGTCATTAGTACTCAC-TGTACAAACCA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
*
488636 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
488653 CATACCAAAA
Statistics
Matches: 138, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
25 2 0.01
26 17 0.12
27 4 0.03
28 113 0.82
29 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 487970 -- 488469
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 488653 -- 489152
CATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCA
Found at i:488669 original size:28 final size:28
Alignment explanation
Indices: 488584--488669 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 28
488574 AAACAAATGC
* * *
488584 CATTAGTACTCA-CTTGACAAACCAATGT
1 CATTAGTACTCACCAT-ACAAAACAAGGT
** * *
488612 CATTAGTACTCACTGTACAAACCAATGT
1 CATTAGTACTCACCATACAAAACAAGGT
488640 CATTAGTACTCACCATACCAAAAC-AGGT
1 CATTAGTACTCACCATA-CAAAACAAGGT
488668 CA
1 CA
488670 GGACTTTCTG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 44 0.88
29 6 0.12
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (28 bp):
CATTAGTACTCACCATACAAAACAAGGT
Left flanking sequence: Indices 488084 -- 488583
AGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAA
GGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
Right flanking sequence: Indices 488670 -- 489169
GGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
Found at i:488688 original size:19 final size:17
Alignment explanation
Indices: 488664--488709 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
488654 ATACCAAAAC
488664 AGGTCAGGACTTTCTGGAA
1 AGGTCAGGAC-TTCT-GAA
*
488683 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
488699 AGGTCAGGACT
1 AGGTCAGGACT
488710 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 488164 -- 488663
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTA
TGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCAATGTCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 488710 -- 489209
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAA
Found at i:488921 original size:43 final size:42
Alignment explanation
Indices: 488756--488925 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
488746 TTGTATGTCA
* * * *
488756 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
488799 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
488837 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
488875 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
488918 TCAGGACT
1 TCAGGACT
488926 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 488256 -- 488755
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGT
CAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAG
TACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 488926 -- 489425
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
Found at i:489153 original size:43 final size:42
Alignment explanation
Indices: 489092--489726 Score: 294
Period size: 43 Copynumber: 15.0 Consensus size: 42
489082 ATTAGTACTC
*
489092 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* *
489135 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* *
489178 ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
489221 ATTCTTCT-TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** *
489264 ATTCTTCT-GGAAAGGTCAAGAC--T-ATGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGAC---TG
** * * *** * * * * *
489307 AGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACT-GTCTTGAAAG---TCAGGACTG
* * *
489358 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
* * *
489401 ACCTTACCAAAAAGATCAAGACTATC-TG--A-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* * * * *
489439 A--TTCTTC----TGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGT-CTTGAAAGTCAGGACTG
*
489477 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * ** *
489520 A-TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
* *** * *
489561 ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAG-TCAGGACTG
* * * *
489604 A--TTCTTC----TGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTT-ATCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTG
*
489642 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTG
* * **
489685 ATTCTTCT-TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
489727 CATTCTTCTT
Statistics
Matches: 459, Mismatches: 87, Indels: 92
0.72 0.14 0.14
Matches are distributed among these distances:
33 10 0.02
35 1 0.00
36 2 0.00
37 2 0.00
38 39 0.08
39 9 0.02
40 18 0.04
41 35 0.08
42 23 0.05
43 273 0.59
44 7 0.02
45 9 0.02
46 3 0.01
47 3 0.01
49 10 0.02
50 2 0.00
51 3 0.01
52 4 0.01
54 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (42 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTG
Left flanking sequence: Indices 488592 -- 489091
CTCACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATA
CCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 489727 -- 490226
CATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATT
Found at i:489157 original size:24 final size:24
Alignment explanation
Indices: 489092--489201 Score: 87
Period size: 19 Copynumber: 5.0 Consensus size: 24
489082 ATTAGTACTC
489092 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* *
489116 -TCTT-TC--AAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
489135 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
489159 -TCTT-TC--AAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTG
* *
489178 ACCTGACCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
489202 TCTTGAAAGG
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
19 17 0.27
20 11 0.17
21 3 0.05
22 4 0.06
23 12 0.19
24 17 0.27
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 488592 -- 489091
CTCACTTGACAAACCAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATA
CCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 489202 -- 489701
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
TTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
Found at i:489158 original size:113 final size:116
Alignment explanation
Indices: 488913--489158 Score: 306
Period size: 119 Copynumber: 2.1 Consensus size: 116
488903 GACTGTCTTG
*
488913 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
488977 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
489032 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * *
489096 TATC-AA-AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
489145 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
489159 TCTTTCAAAG
Statistics
Matches: 114, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.34
114 5 0.04
116 2 0.02
119 62 0.54
120 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 488413 -- 488912
AGGACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCA
ATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGA
CTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 489159 -- 489658
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTAT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
Found at i:489212 original size:19 final size:20
Alignment explanation
Indices: 489188--489286 Score: 94
Period size: 19 Copynumber: 4.7 Consensus size: 20
489178 ACCTGACCAA
489188 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
489207 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG----TTCTTG
489231 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
489250 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG-TTC-T-T-G
489274 AAAGGTCAAGACT
1 AAAGGTCAAGACT
489287 ATGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 31 0.47
21 2 0.03
22 1 0.02
23 1 0.02
24 31 0.47
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (20 bp):
AAAGGTCAAGACTGTTCTTG
Left flanking sequence: Indices 488688 -- 489187
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 489287 -- 489786
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
Found at i:489231 original size:24 final size:24
Alignment explanation
Indices: 489202--489286 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
489192 GTCAAGACTG
*
489202 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
489226 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAAGACTGATTCT
*
489245 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
*
489269 TCTGGAAAGGTCAAGACT
1 TCTTGAAAGGTCAAGACT
489287 ATGAAAGGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 18 0.35
24 34 0.65
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAAGACTGATTCT
Left flanking sequence: Indices 488702 -- 489201
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 489287 -- 489786
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
Found at i:489294 original size:16 final size:16
Alignment explanation
Indices: 489273--489303 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
489263 GATTCTTCTG
489273 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
489289 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
489304 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 488773 -- 489272
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 489304 -- 489803
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Found at i:489511 original size:19 final size:19
Alignment explanation
Indices: 489487--489769 Score: 99
Period size: 19 Copynumber: 13.7 Consensus size: 19
489477 ACCTTACCAA
489487 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
489506 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
489530 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
489549 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
489571 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
489590 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** *
489610 -CTGGTCAAGACTGTCTTTC
1 AAAGGTCAAGACTGTC-TTG
* ** *
489629 AAA-GTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACT-GTCTT----G
489652 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
489671 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
489695 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
489714 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* * *
489738 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTGTCTTG
489757 AAAGGTCAAGACT
1 AAAGGTCAAGACT
489770 CATTTGTATG
Statistics
Matches: 202, Mismatches: 29, Indels: 66
0.68 0.10 0.22
Matches are distributed among these distances:
17 5 0.02
18 2 0.01
19 103 0.51
20 4 0.02
21 7 0.03
22 11 0.05
23 7 0.03
24 63 0.31
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 488987 -- 489486
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 489770 -- 490269
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAA
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
TTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
Found at i:489695 original size:24 final size:24
Alignment explanation
Indices: 489666--489750 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
489656 GTCAAGACTG
489666 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
489690 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
489709 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
489733 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
489751 CTTTTGAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 489166 -- 489665
AAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 489751 -- 490250
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCA
Found at i:489732 original size:43 final size:43
Alignment explanation
Indices: 489487--489773 Score: 290
Period size: 43 Copynumber: 6.8 Consensus size: 43
489477 ACCTTACCAA
* *
489487 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* *
489530 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT--CATTCTTCTTG
* * * *
489571 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* ** ***
489612 ---GGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTCATTCTT-CTTG
*
489652 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
489695 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * *
489738 AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
489774 TGTATGTCAT
Statistics
Matches: 203, Mismatches: 26, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
37 4 0.02
38 20 0.10
39 5 0.02
41 32 0.16
42 10 0.05
43 128 0.63
44 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 488987 -- 489486
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 489774 -- 490273
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGC
AATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
Found at i:489751 original size:24 final size:24
Alignment explanation
Indices: 489666--489773 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 24
489656 GTCAAGACTG
*
489666 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* *
489690 TCTTGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
489709 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
489733 TCTTGAAAGGTCAGGA--C--TCT
1 TCTTGAAAGGTCAGGACTCATTCT
*
489753 T-TTGAAAGGTCAAGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
489774 TGTATGTCAT
Statistics
Matches: 69, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
19 28 0.41
20 5 0.07
21 2 0.03
22 1 0.01
23 2 0.03
24 31 0.45
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 489166 -- 489665
AAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 489774 -- 490273
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGC
AATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
Found at i:489848 original size:43 final size:42
Alignment explanation
Indices: 489783--490198 Score: 228
Period size: 43 Copynumber: 10.2 Consensus size: 42
489773 TTGTATGTCA
* * *
489783 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
489826 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
489864 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
489902 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
489945 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * *
489986 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
490029 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * * *
490067 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
490105 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
490148 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
490191 TCAGGACT
1 TCAGGACT
490199 CATTCTTCTT
Statistics
Matches: 281, Mismatches: 63, Indels: 58
0.70 0.16 0.14
Matches are distributed among these distances:
33 19 0.07
35 2 0.01
37 9 0.03
38 32 0.11
39 12 0.04
41 29 0.10
42 14 0.05
43 161 0.57
44 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 489283 -- 489782
GACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 490199 -- 490698
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
Found at i:489931 original size:76 final size:80
Alignment explanation
Indices: 489804--490036 Score: 253
Period size: 76 Copynumber: 2.9 Consensus size: 80
489794 CTTATCAAAA
* *
489804 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGT-TTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
489866 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
*
489881 -GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGT-TTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
489945 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * * *
489963 GAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
1 ---AGGTCAAGACTGTTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TT-GA
490027 AGTCAGGACT
61 AGTCAGGACT
490037 AACCTTACCA
Statistics
Matches: 134, Mismatches: 10, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
76 52 0.39
77 2 0.01
79 1 0.01
81 15 0.11
82 1 0.01
84 42 0.31
85 9 0.07
86 12 0.09
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (80 bp):
AGGTCAAGACTGTTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 489304 -- 489803
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 490037 -- 490536
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
TCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTACCAAAACAGG
TGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTAC
Found at i:489945 original size:19 final size:19
Alignment explanation
Indices: 489921--489985 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
489911 ACCTTACCAA
489921 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
489940 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
489964 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
489983 AAA
1 AAA
489986 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 489421 -- 489920
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 489986 -- 490485
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAA
TGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTAT
GGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAA
Found at i:490037 original size:203 final size:203
Alignment explanation
Indices: 489782--490188 Score: 778
Period size: 203 Copynumber: 2.0 Consensus size: 203
489772 TTTGTATGTC
489782 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
489847 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
*
489912 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
489977 GTCTTGAA
196 GTCTTGAA
*
489985 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
* *
490050 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
490115 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
490180 GTCTTGAA
196 GTCTTGAA
490188 A
1 A
490189 GGTCAGGACT
Statistics
Matches: 200, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
203 200 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (203 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
GTCTTGAA
Left flanking sequence: Indices 489282 -- 489781
AGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 490189 -- 490688
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTGCTCACCATACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGA
CTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
Found at i:490073 original size:434 final size:429
Alignment explanation
Indices: 489328--490202 Score: 1285
Period size: 434 Copynumber: 2.0 Consensus size: 429
489318 GGAATGACCA
*
489328 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
489393 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
*
489458 TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
131 TATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
* ***
489523 TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
196 TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGATCAAGACTATCT
* ** **** * * *
489588 TGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
261 TCAAAGATCAGGACTGAACCTTCTCAAAAAGACAGACTATCAAAGTCAGGACTGAACCTT--C--
* * ***
489652 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAA
322 --AGGTCAAGACTGTATTGAAAGGTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAA
* *
489716 AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGG
384 AGGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAAGG
489762 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
489827 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
489892 TATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
131 TATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
* *
489957 TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
196 TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGATCAAGACTATC-
** **
490022 TTCAAAG-TCAGGACT-AACCTTAC-CAAAAAGATCAAGACTATCTGA-TCAGGACTGATTCTTC
260 TTCAAAGATCAGGACTGAACCTT-CTCAAAAAGA-C-AGACTATCAAAGTCAGGACTGAACCTTC
* * **
490083 TGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
322 AGGTCAAGACTGTATTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* *
490148 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
387 TCAGGACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAAGG
*
490191 TCAGGACTCATT
1 TCAAGACTCATT
490203 CTTCTTGAAA
Statistics
Matches: 399, Mismatches: 36, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
428 3 0.01
429 102 0.26
433 9 0.02
434 269 0.67
435 16 0.04
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (429 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGATCAAGACTATCT
TCAAAGATCAGGACTGAACCTTCTCAAAAAGACAGACTATCAAAGTCAGGACTGAACCTTCAGGT
CAAGACTGTATTGAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAAGG
Left flanking sequence: Indices 488828 -- 489327
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
GACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 490203 -- 490702
CTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACC
AACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
Found at i:490118 original size:76 final size:79
Alignment explanation
Indices: 490008--490164 Score: 221
Period size: 76 Copynumber: 2.0 Consensus size: 79
489998 TTATCAAAAA
*
490008 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
490070 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
490084 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
490149 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
490165 TGAAAGGTCA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
76 50 0.71
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 489508 -- 490007
AGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
AAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 490165 -- 490664
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCA
ATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTACCAAAACA
GGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAT
Found at i:490148 original size:19 final size:19
Alignment explanation
Indices: 490124--490198 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
490114 ACCTTACCAA
490124 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
490143 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
490167 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
490186 AAAGGTCAGGACT
1 AAAGGTCAAGACT
490199 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 30 0.62
24 18 0.38
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 489624 -- 490123
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 490199 -- 490698
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
Found at i:490167 original size:24 final size:24
Alignment explanation
Indices: 490138--490222 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
490128 GTCAAGACTG
490138 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
490162 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
490181 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
490205 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
490223 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 489638 -- 490137
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
AAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 490223 -- 490722
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTAC
CAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGAC
Found at i:490204 original size:43 final size:43
Alignment explanation
Indices: 489881--490222 Score: 243
Period size: 43 Copynumber: 8.2 Consensus size: 43
489871 TGATTCTTCT
* * * **
489881 GGTCAAGACTGTATTTCAAA-GTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTAAAA
* *
489924 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAAAA
* * * *
489967 GGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TAAAA
* ** **
490008 GGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTAAAA
* *
490051 GATCAAGACTATC-TG--A--TCAGGACTGATTCTTC-T----
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAAAA
* * ** * **
490084 GGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTAAAA
*
490127 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAAAA
* *
490170 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAAAA
*
490213 GGTCAGGACT
1 GGTCAAGACT
490223 CATTGCAATT
Statistics
Matches: 239, Mismatches: 40, Indels: 40
0.75 0.13 0.13
Matches are distributed among these distances:
33 9 0.04
34 1 0.00
36 1 0.00
37 3 0.01
38 20 0.08
39 5 0.02
40 3 0.01
41 26 0.11
42 11 0.05
43 155 0.65
44 5 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (43 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAAAA
Left flanking sequence: Indices 489381 -- 489880
GTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 490223 -- 490722
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTAC
CAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGAC
Found at i:490401 original size:28 final size:28
Alignment explanation
Indices: 490234--490391 Score: 291
Period size: 28 Copynumber: 5.6 Consensus size: 28
490224 ATTGCAATTC
490234 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
490262 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
490290 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
490318 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
490346 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
490374 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
490392 CATACCAACA
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
27 2 0.02
28 126 0.98
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 489734 -- 490233
CTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 490392 -- 490891
CATACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTC
CGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
Found at i:490593 original size:43 final size:43
Alignment explanation
Indices: 490530--490742 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
490520 TTGTATGTCA
* * *
490530 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
490573 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * *
490611 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
490649 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
490692 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
490735 TCAGGACT
1 TCAGGACT
490743 TTTGATGGAA
Statistics
Matches: 137, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.04
41 1 0.01
42 4 0.03
43 93 0.68
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 490030 -- 490529
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
TTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTACCA
AAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 490743 -- 491242
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
Found at i:490651 original size:19 final size:19
Alignment explanation
Indices: 490629--490699 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
490619 GATTCTTCTG
490629 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
490648 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
490671 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
490691 GTCAGGACT
1 GTCAAGACT
490700 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 490129 -- 490628
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCT
CACCATACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACT
TTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 490700 -- 491199
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
Found at i:490680 original size:24 final size:24
Alignment explanation
Indices: 490648--490724 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
490638 GTCTTTCACA
*
490648 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
* *
490672 GTCAAGACTG-TCTT-TC--ACA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
490691 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
490715 GTCAAGACTG
1 GTCAAGACTG
490725 TCTTGAAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 5 0.13
24 17 0.45
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 490148 -- 490647
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACCCTACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
Right flanking sequence: Indices 490725 -- 491224
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGA
Found at i:490960 original size:76 final size:79
Alignment explanation
Indices: 490850--491008 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 79
490840 TTATCAAAAA
*
490850 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
490912 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
490926 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
490991 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
491007 GG
1 GG
491009 AAAGGTCAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
76 50 0.69
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 490350 -- 490849
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCC
TACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 491009 -- 491508
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCTTGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
Found at i:490974 original size:43 final size:43
Alignment explanation
Indices: 490806--491040 Score: 138
Period size: 43 Copynumber: 5.7 Consensus size: 43
490796 CCAAAAATGG
* * * * *
490806 AAAGGTCAAGACTGT-CTTGAA-ATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * *
490847 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * * *
490890 AAAGATCAAGAC--TA--TC-TGATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* *
490925 --TGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* ** * ***
490966 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* **
491009 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACT
491041 CATTCTTCTT
Statistics
Matches: 151, Mismatches: 28, Indels: 28
0.73 0.14 0.14
Matches are distributed among these distances:
33 7 0.05
35 2 0.01
37 6 0.04
38 20 0.13
39 6 0.04
41 16 0.11
42 4 0.03
43 87 0.58
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 490306 -- 490805
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAA
ACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCCTACCAAAACAGGTGAGGACTC
ATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 491041 -- 491540
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAG
Found at i:490990 original size:19 final size:19
Alignment explanation
Indices: 490966--491040 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
490956 ACCTTACCAA
490966 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
490985 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
491009 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
491028 AAAGGTCAGGACT
1 AAAGGTCAAGACT
491041 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 490466 -- 490965
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 491041 -- 491540
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAG
Found at i:491011 original size:24 final size:23
Alignment explanation
Indices: 490983--491068 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
490973 AAGACTGTCT
490983 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
*
491006 TGGAAAGGTCAAGACTG--TC-T-
1 T-GAAAGGTCAGGACTGATTCTTC
*
491026 TGAAAGGTCAGGACTCATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
491049 TTGAAAGGTCAGGACTGATT
1 -TGAAAGGTCAGGACTGATT
491069 ATGGAAGGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (23 bp):
TGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 490483 -- 490982
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 491069 -- 491568
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCTTGAAAGGTC
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATAC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
Found at i:491046 original size:43 final size:43
Alignment explanation
Indices: 490966--491065 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
490956 ACCTTACCAA
*
490966 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
491009 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
491052 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
491066 ATTATGGAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 490466 -- 490965
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 491066 -- 491565
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCA
TACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
Found at i:491212 original size:43 final size:43
Alignment explanation
Indices: 491112--491236 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
491102 ATTAGTACTC
* *
491112 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
491155 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
491198 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
491237 AATGAGAATG
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
40 15 0.20
41 2 0.03
42 5 0.07
43 49 0.66
44 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 490612 -- 491111
CAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 491237 -- 491736
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Found at i:491227 original size:16 final size:16
Alignment explanation
Indices: 491206--491236 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
491196 TGATTCTTCT
491206 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
491222 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
491237 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 490706 -- 491205
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 491237 -- 491736
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Found at i:491341 original size:16 final size:16
Alignment explanation
Indices: 491320--491350 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
491310 AGGACTGTCT
491320 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
491336 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
491351 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 490820 -- 491319
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCT
Right flanking sequence: Indices 491351 -- 491850
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
ATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGT
Found at i:491476 original size:43 final size:43
Alignment explanation
Indices: 491413--491630 Score: 207
Period size: 43 Copynumber: 5.2 Consensus size: 43
491403 TTGTATGTCA
* * *
491413 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
491456 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** *** * *
491494 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
491537 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
491580 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
491623 TCAGGACT
1 TCAGGACT
491631 TTTGATGGAA
Statistics
Matches: 139, Mismatches: 28, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
38 22 0.16
39 5 0.04
40 1 0.01
41 1 0.01
42 8 0.06
43 102 0.73
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 490913 -- 491412
GACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
ACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 491631 -- 492130
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTC
ACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAA
TTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCT
TGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGCTTTGCTCATGACTTTGTTCGCTT
TGCGAGTGCTTTCTTAAGGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTG
ATTGAAAGAAGGGAACTCATCAATTTGCAATTGTCATGGATTTTG
Found at i:491587 original size:19 final size:19
Alignment explanation
Indices: 491517--491587 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
491507 TTCTTGAAAG
*
491517 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
491536 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
491559 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
491579 GTCAGGACT
1 GTCAAGACT
491588 AACCTGACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 491017 -- 491516
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAG
Right flanking sequence: Indices 491588 -- 492087
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATT
AGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGAAAAGA
ATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTG
AGTCTGAATCAGCCCTACGCTTTGCTCATGACTTTGTTCGCTTTGCGAGTGCTTTCTTAAGGGAA
CTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTGAT
Found at i:491794 original size:28 final size:28
Alignment explanation
Indices: 491762--491816 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
491752 TTGCAATTGT
*
491762 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTATACAAACAA
*
491790 ATGCCATTAGTACTCACTATACCAACA
1 ATGCCATTAGTACTCACTATACAAACA
491817 TGAGTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTATACAAACAA
Left flanking sequence: Indices 491262 -- 491761
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAACAGGTGAGGACTGTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 491817 -- 492316
TGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCA
TACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAG
TTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGCTTTGCTCATGACTT
TGTTCGCTTTGCGAGTGCTTTCTTAAGGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAA
TTTGAATTGATTGAAAGAAGGGAACTCATCAATTTGCAATTGTCATGGATTTTGGAAGGCATACA
ATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTT
Found at i:492230 original size:28 final size:28
Alignment explanation
Indices: 492198--492298 Score: 193
Period size: 28 Copynumber: 3.6 Consensus size: 28
492188 TGTTGGTATG
*
492198 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
492226 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
492254 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
492282 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
492299 ACAATTGCAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 491698 -- 492197
GTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCAC
CATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATT
GTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTG
TCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGCTTTGCTCATGACTTTGTTCGCTTTG
CGAGTGCTTTCTTAAGGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTGAT
TGAAAGAAGGGAACTCATCAATTTGCAATTGTCATGGATTTTGGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 492299 -- 492798
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTC
TCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
Found at i:492460 original size:95 final size:98
Alignment explanation
Indices: 492282--492461 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
492272 TGTTTGTACA
* *
492282 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
492347 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
492381 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
492442 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
492462 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 491782 -- 492281
ACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCAT
TAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGAAAAG
AATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGT
GAGTCTGAATCAGCCCTACGCTTTGCTCATGACTTTGTTCGCTTTGCGAGTGCTTTCTTAAGGGA
ACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTGATTGAAAGAAGGGAACTCATC
AATTTGCAATTGTCATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTG
GTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 492462 -- 492961
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTT
TCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:492491 original size:43 final size:43
Alignment explanation
Indices: 492444--492647 Score: 213
Period size: 43 Copynumber: 4.9 Consensus size: 43
492434 CTGACCTTTC
* *
492444 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
492487 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *** *
492530 AATACAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * * *
492568 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
492611 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
492648 TGACATACAA
Statistics
Matches: 130, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
38 24 0.18
39 3 0.02
40 1 0.01
41 1 0.01
42 3 0.02
43 98 0.75
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 491944 -- 492443
GAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGCTTTGCTCATGA
CTTTGTTCGCTTTGCGAGTGCTTTCTTAAGGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGAT
AAATTTGAATTGATTGAAAGAAGGGAACTCATCAATTTGCAATTGTCATGGATTTTGGAAGGCAT
ACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGC
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 492648 -- 493147
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
Found at i:492500 original size:19 final size:19
Alignment explanation
Indices: 492473--492543 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
492463 TGGTCAGGTT
492473 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
492492 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
492516 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
492535 AGTCTTGAC
1 AGTCCTGAC
492544 CTTTCAAGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 491973 -- 492472
GAGTGAGTCTGAATCAGCCCTACGCTTTGCTCATGACTTTGTTCGCTTTGCGAGTGCTTTCTTAA
GGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTGATTGAAAGAAGGGAACT
CATCAATTTGCAATTGTCATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTT
TTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 492544 -- 493043
CTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
Found at i:492648 original size:81 final size:82
Alignment explanation
Indices: 492430--492648 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 82
492420 TTCCATCAAA
* * * *
492430 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA---T-AAAGACAG
492494 TCTTGACCTTTTTGATAAGGTC
61 TCTTGACCTTTTTGATAAGGTC
* * ** * * * *
492516 AGTCCTGACTGTGAAATACAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGAT-CAGATAGTCTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGATAAAGACAGTCTT
* * *
492579 GATCTTTTTGGTAAGGTT
65 GACCTTTTTGATAAGGTC
* *
492597 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGAT
492649 GACATACAAA
Statistics
Matches: 107, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
81 60 0.56
82 7 0.07
83 1 0.01
85 8 0.07
86 31 0.29
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (82 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGATAAAGACAGTCTTG
ACCTTTTTGATAAGGTC
Left flanking sequence: Indices 491930 -- 492429
TTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTA
CGCTTTGCTCATGACTTTGTTCGCTTTGCGAGTGCTTTCTTAAGGGAACTCGTCAAGCGAAGCTC
TGACGGAAATGGATAAATTTGAATTGATTGAAAGAAGGGAACTCATCAATTTGCAATTGTCATGG
ATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 492649 -- 493148
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAG
Found at i:492718 original size:16 final size:16
Alignment explanation
Indices: 492693--492723 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
492683 TCATTCTCAT
492693 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
492709 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
492724 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 492193 -- 492692
GTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 492724 -- 493223
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTT
Found at i:492761 original size:19 final size:23
Alignment explanation
Indices: 492710--492765 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 23
492700 GACCTTTCAT
492710 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
492734 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
492753 AGTCTTGACCTTT
1 AGTCTTGACCTTT
492766 TTGGTAAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 13 0.43
20 1 0.03
21 3 0.10
23 1 0.03
24 12 0.40
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (23 bp):
AGTCTTGACCTTTCCAAAGAATC
Left flanking sequence: Indices 492210 -- 492709
GGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGT
TTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 492766 -- 493265
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTT
TCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTT
GATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCA
Found at i:492779 original size:43 final size:43
Alignment explanation
Indices: 492732--492818 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
492722 TCCAGAAGAA
* *
492732 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
492775 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
492818 T
1 T
492819 GAGTACTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 492232 -- 492731
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 492819 -- 493318
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
ATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
Found at i:492898 original size:24 final size:24
Alignment explanation
Indices: 492862--492950 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
492852 GTCCTTCCAT
492862 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
492886 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
* *
492907 -A-CAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
492929 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
492951 CAGTCTTGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
19 13 0.24
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 34 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 492362 -- 492861
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 492951 -- 493450
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTAT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTC
Found at i:492903 original size:180 final size:168
Alignment explanation
Indices: 492535--492880 Score: 430
Period size: 180 Copynumber: 2.0 Consensus size: 168
492525 TGTGAAATAC
* * *
492535 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
*
492600 CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
66 CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--C
* * *
492665 TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
129 AT-ATGGTCATTCCTC-A-CA-T-TAATCAGTCCTGACCTTTCAT
*
492710 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGG
* *
492775 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
61 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAAT
*
492840 G-CA-ATTGGTCCTGTCCTTC-CA-TAATCAGTCCTGACCTTTCA
126 GACATA-TGGTCAT-TCC-TCACATTAATCAGTCCTGACCTTTCA
492881 AGAAGAATGA
Statistics
Matches: 152, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
172 18 0.12
175 34 0.22
176 6 0.04
177 4 0.03
178 2 0.01
179 2 0.01
180 86 0.57
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (168 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACAT
ATGGTCATTCCTCACATTAATCAGTCCTGACCTTTCAT
Left flanking sequence: Indices 492035 -- 492534
TAAGGGAACTCGTCAAGCGAAGCTCTGACGGAAATGGATAAATTTGAATTGATTGAAAGAAGGGA
ACTCATCAATTTGCAATTGTCATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCAT
CTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
AACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAC
Right flanking sequence: Indices 492881 -- 493380
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTAT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
Found at i:492917 original size:19 final size:19
Alignment explanation
Indices: 492890--492964 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
492880 AAGAAGAATG
492890 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
492909 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
492933 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
492952 AGTCTTGACCTTT
1 AGTCCTGACCTTT
492965 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 492390 -- 492889
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTC
CTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 492965 -- 493464
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTC
Found at i:492918 original size:43 final size:43
Alignment explanation
Indices: 492865--493130 Score: 185
Period size: 43 Copynumber: 6.3 Consensus size: 43
492855 CTTCCATAAT
* *
492865 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*
492908 CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*** * ** *
492951 CAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGA
* *
492994 CAGTATTGA-C---C-AGAAGAATCAGTCCTGATCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
* * *** * * *
493032 TAGTCTTGATCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAAGA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTT-CAAGA
* ** * * *
493075 CAGTATTGACCTTTTTGATAAG-GTCAGTACTGA--TTTCAAGA
1 CAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
493116 CAGTCTTGACCTTTC
1 CAGTCTTGACCTTTC
493131 CATTTTTGGT
Statistics
Matches: 177, Mismatches: 36, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
37 3 0.02
38 24 0.14
39 1 0.01
40 3 0.02
41 14 0.08
42 8 0.05
43 114 0.64
44 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 492365 -- 492864
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGT
CTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 493131 -- 493630
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTG
TTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
Found at i:493040 original size:81 final size:81
Alignment explanation
Indices: 492922--493085 Score: 274
Period size: 81 Copynumber: 2.0 Consensus size: 81
492912 CTTGACCTTT
492922 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
*
492987 TGAAATACAGTATTGA
66 TGAAAGACAGTATTGA
* * * * *
493003 CCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
493068 TGAAAGACAGTATTGA
66 TGAAAGACAGTATTGA
493084 CC
1 CC
493086 TTTTTGATAA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (81 bp):
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
TGAAAGACAGTATTGA
Left flanking sequence: Indices 492422 -- 492921
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 493086 -- 493585
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGG
TATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
Found at i:493101 original size:124 final size:124
Alignment explanation
Indices: 492881--493107 Score: 305
Period size: 124 Copynumber: 1.8 Consensus size: 124
492871 TGACCTTTCA
*
492881 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
* * * *
492946 CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACC
66 AAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACCTTGAAATACAGTATTGACC
* * * *** * *
493005 AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG-GTTAGTCCTGA-CTT
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCTT
493068 TGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
65 T-AAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
493108 TTTCAAGACA
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
123 4 0.05
124 81 0.92
125 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (124 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
AAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACCTTGAAATACAGTATTGACC
Left flanking sequence: Indices 492381 -- 492880
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
Right flanking sequence: Indices 493108 -- 493607
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGA
CCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGT
ATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
Found at i:493257 original size:43 final size:42
Alignment explanation
Indices: 493210--493362 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
493200 ACCTTTCAAG
*
493210 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
493253 ACAGTATTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTATTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
493288 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAT
1 ACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
493329 ACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGA
493363 TGACATACAA
Statistics
Matches: 81, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
33 8 0.10
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 4 0.05
43 38 0.47
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (42 bp):
ACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 492710 -- 493209
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 493363 -- 493862
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAG
Found at i:493533 original size:28 final size:28
Alignment explanation
Indices: 493501--493658 Score: 291
Period size: 28 Copynumber: 5.6 Consensus size: 28
493491 TGTTGGTATG
*
493501 GTGAGCACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
493529 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
493557 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
493585 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
493613 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
493641 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
493659 GAATTGCAAT
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
28 127 0.99
29 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 493001 -- 493500
GACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTC
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 493659 -- 494158
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
ATGACATACAAATGAGTCTTGACCTTTCAAATGAGTCCTGACCTT
Found at i:493694 original size:24 final size:24
Alignment explanation
Indices: 493670--493754 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
493660 AATTGCAATG
*
493670 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
493694 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
493713 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
493737 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
493755 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 493170 -- 493669
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTT
GGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 493755 -- 494254
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTAT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAA
TGAGTCCTGACCTTTCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Found at i:493721 original size:19 final size:19
Alignment explanation
Indices: 493694--493768 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
493684 AAGAAGAATG
493694 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
493713 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
493737 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
493756 AGTCTTGACCTTT
1 AGTCCTGACCTTT
493769 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 493194 -- 493693
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCAT
AATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 493769 -- 494268
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAATGAGTCCTGACCTT
TCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
Found at i:493842 original size:81 final size:81
Alignment explanation
Indices: 493728--493889 Score: 270
Period size: 81 Copynumber: 2.0 Consensus size: 81
493718 TGACCTTTCA
493728 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTG
*
493793 AAATACAGTCTTGACC
66 AAATACAGTATTGACC
* * * * *
493809 AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTG
493874 AAATACAGTATTGACC
66 AAATACAGTATTGACC
493890 TTTTTGATAA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (81 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTG
AAATACAGTATTGACC
Left flanking sequence: Indices 493228 -- 493727
GTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGT
ACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTAC
TCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCA
Right flanking sequence: Indices 493890 -- 494389
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAATGAGT
CCTGACCTTTCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
Found at i:493936 original size:19 final size:19
Alignment explanation
Indices: 493912--493976 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
493902 TCAGTACTGA
493912 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
493931 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
493955 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
493974 TTT
1 TTT
493977 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 493412 -- 493911
CCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGT
ATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 493977 -- 494476
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAATGAGTCCTGACCTTTCAAGAAGAATGA
GTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
Found at i:493950 original size:84 final size:86
Alignment explanation
Indices: 493861--494095 Score: 226
Period size: 76 Copynumber: 2.9 Consensus size: 86
493851 TGGTAAGGTT
* **
493861 AGTCCTGA-CTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA-T-TTCAAGACAG
1 AGTCCTGACCTTT-AAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAG
493923 TCTTGACCTTTCAAGAAAAATC
65 TCTTGACCTTTCAAGAAAAATC
* * * *
493945 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACCTTTAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
*
494010 CTTGA-C---C-AGAAGAATC
66 CTTGACCTTTCAAGAAAAATC
* * * * * * * *
494026 AGTCCTGA----T-CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
494086 CTTGACCTTT
66 CTTGACCTTT
494096 TTGATAAGGT
Statistics
Matches: 131, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
76 51 0.39
77 2 0.02
81 16 0.12
82 1 0.01
84 41 0.31
85 6 0.05
86 14 0.11
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (86 bp):
AGTCCTGACCTTTAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
CTTGACCTTTCAAGAAAAATC
Left flanking sequence: Indices 493361 -- 493860
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 494096 -- 494595
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAATGAGTCCTGACCTTTC
AAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
Found at i:493990 original size:43 final size:42
Alignment explanation
Indices: 493694--494114 Score: 311
Period size: 43 Copynumber: 10.2 Consensus size: 42
493684 AAGAAGAATG
*** *
493694 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
493737 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
493780 AGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
493818 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
493861 AGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
493904 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
493945 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
493988 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
494026 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
494064 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
494107 AGTACTGA
1 AGTCCTGA
494115 TGACATACAA
Statistics
Matches: 294, Mismatches: 60, Indels: 48
0.73 0.15 0.12
Matches are distributed among these distances:
33 12 0.04
37 6 0.02
38 47 0.16
39 3 0.01
41 28 0.10
42 9 0.03
43 183 0.62
44 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 493194 -- 493693
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCAT
AATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 494115 -- 494614
TGACATACAAATGAGTCTTGACCTTTCAAATGAGTCCTGACCTTTCAAGAAGAATGAGTCATGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
Found at i:494146 original size:19 final size:19
Alignment explanation
Indices: 494122--494205 Score: 80
Period size: 19 Copynumber: 4.2 Consensus size: 19
494112 TGATGACATA
494122 CAAATGAGTCTTGACCTTT
1 CAAATGAGTCTTGACCTTT
*
494141 CAAATGAGTCCTGACCTTT
1 CAAATGAGTCTTGACCTTT
*
494160 CAAGAAGAATGAGTCATGACCTTT
1 C----A-AATGAGTCTTGACCTTT
*
494184 CAAGA-CAGTCTTGACCTTT
1 CAA-ATGAGTCTTGACCTTT
494203 CAA
1 CAA
494206 GAAGAATCAG
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
19 35 0.64
20 2 0.04
23 1 0.02
24 17 0.31
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (19 bp):
CAAATGAGTCTTGACCTTT
Left flanking sequence: Indices 493622 -- 494121
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAG
TATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 494206 -- 494705
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:494179 original size:24 final size:24
Alignment explanation
Indices: 494147--494231 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
494137 CTTTCAAATG
*
494147 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
*
494171 AGTCATGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
494190 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
494214 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
494232 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 493647 -- 494146
ACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAATG
Right flanking sequence: Indices 494232 -- 494731
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTT
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
Found at i:494206 original size:19 final size:19
Alignment explanation
Indices: 494171--494245 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
494161 AAGAAGAATG
*
494171 AGTCATGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
494190 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC---AAG-A-C
*
494214 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
494233 AGTCTTGACCTTT
1 AGTCTTGACCTTT
494246 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 493671 -- 494170
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACC
TTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 494246 -- 494745
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAG
Found at i:494265 original size:43 final size:43
Alignment explanation
Indices: 494128--494245 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
494118 CATACAAATG
* * * *
494128 AGTCTTGACCTTTCAA-ATGAGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGA-CAGTCTTGACCTTTCAAGAAGAATC
*
494171 AGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
494214 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
494246 TTGGTAAGGT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
43 68 0.99
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 493628 -- 494127
ATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 494246 -- 494745
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAG
Found at i:494490 original size:43 final size:42
Alignment explanation
Indices: 494443--494595 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
494433 ACCTTTCAAG
494443 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
494486 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
494521 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
494562 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
494596 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 493943 -- 494442
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTTCAAATGAGTCCTGACCTTTCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 494596 -- 495095
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAGGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
Found at i:494666 original size:16 final size:16
Alignment explanation
Indices: 494642--494672 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
494632 CATTCTCATT
494642 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
494658 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
494673 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 494142 -- 494641
AAATGAGTCCTGACCTTTCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 494673 -- 495172
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAAGGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGA
Found at i:494727 original size:43 final size:43
Alignment explanation
Indices: 494642--494766 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
494632 CATTCTCATT
*** *
494642 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
494682 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
494725 AGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
494767 GAGTACTAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 51 0.71
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 494142 -- 494641
AAATGAGTCCTGACCTTTCAAGAAGAATGAGTCATGACCTTTCAAGACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTCAAAAAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 494767 -- 495266
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAAGGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTT
CCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGA
Found at i:494997 original size:43 final size:42
Alignment explanation
Indices: 494950--495102 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
494940 ACCTTTCAAG
494950 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
494993 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
495028 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
495069 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
495103 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 494450 -- 494949
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAGGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 495103 -- 495602
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGAT
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG
Found at i:495328 original size:43 final size:43
Alignment explanation
Indices: 495243--495357 Score: 125
Period size: 43 Copynumber: 2.7 Consensus size: 43
495233 CATTCTCATT
* *
495243 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTATTGACCTTTCCAGAAAAATC
495283 AGTCCTGACCTTTCAAGACAGTATTGACCTTT-CA-AAAAAGGTC
1 AGTCCTGACCTTTCAAGACAGTATTGACCTTTCCAGAAAAA--TC
**
495326 AGTCCTGA-CTGTGAAAGACAGTATTGACCTTT
1 AGTCCTGACCT-TTCAAGACAGTATTGACCTTT
495358 TTGATAAGGT
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
40 14 0.22
41 6 0.09
42 4 0.06
43 41 0.63
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTATTGACCTTTCCAGAAAAATC
Left flanking sequence: Indices 494743 -- 495242
CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATAATCAGTCCTGACCTTTCAAGAAGAAGGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAG
ACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 495358 -- 495857
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:495443 original size:24 final size:24
Alignment explanation
Indices: 495411--495495 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
495401 GTCCTTCCAT
495411 AATCAGTCCTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCCAGAAG
*
495435 AATGAGTCCTGACCTTT-C--AAG
1 AATCAGTCCTGACCTTTCCAGAAG
*
495456 -A-CAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCCAGAAG
495478 AATCAGTCCTGACCTTTC
1 AATCAGTCCTGACCTTTC
495496 AAGACAGTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 12 0.23
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 30 0.58
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCCAGAAG
Left flanking sequence: Indices 494911 -- 495410
TTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCT
GACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 495496 -- 495995
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTT
CAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTT
TGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAA
Found at i:495466 original size:19 final size:19
Alignment explanation
Indices: 495439--495513 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
495429 CAGAAGAATG
495439 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
495458 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
495482 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
495501 AGTCTTGACCTTT
1 AGTCCTGACCTTT
495514 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 494939 -- 495438
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGA
CAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGT
CCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 495514 -- 496013
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTT
TTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAA
Found at i:495589 original size:81 final size:81
Alignment explanation
Indices: 495471--495634 Score: 265
Period size: 81 Copynumber: 2.0 Consensus size: 81
495461 CTTGACCTTT
495471 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
*
495536 TGAAATACAGTATTGA
66 TGAAAGACAGTATTGA
* * * * *
495552 CCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
*
495617 TGAAAGACAGTCTTGA
66 TGAAAGACAGTATTGA
495633 CC
1 CC
495635 TTTTTGATAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (81 bp):
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
TGAAAGACAGTATTGA
Left flanking sequence: Indices 494971 -- 495470
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGA
GTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 495635 -- 496134
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGT
CTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTG
ACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGA
CCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATA
Found at i:495681 original size:19 final size:19
Alignment explanation
Indices: 495657--495721 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
495647 TCAGTACTGA
495657 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
495676 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
495700 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
495719 TTT
1 TTT
495722 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 495157 -- 495656
CCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTG
ACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAG
TCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 495722 -- 496221
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTAC
TAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAAT
GAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATC
Found at i:495695 original size:84 final size:86
Alignment explanation
Indices: 495606--495840 Score: 253
Period size: 76 Copynumber: 2.9 Consensus size: 86
495596 TGGTAAGGTT
*
495606 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGACAG
1 AGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAG
495668 TCTTGACCTTTCAAGAAAAATC
65 TCTTGACCTTTCAAGAAAAATC
* * * *
495690 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGT
*
495755 CTTGA-C---C-AGAAGAATC
66 CTTGACCTTTCAAGAAAAATC
* * * * * * *
495771 AGTCCTGA----T-CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGT
495831 CTTGACCTTT
66 CTTGACCTTT
495841 TTGATAAGGT
Statistics
Matches: 134, Mismatches: 10, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
76 52 0.39
77 2 0.01
81 16 0.12
82 1 0.01
84 43 0.32
85 8 0.06
86 12 0.09
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (86 bp):
AGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGT
CTTGACCTTTCAAGAAAAATC
Left flanking sequence: Indices 495106 -- 495605
CATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCT
GACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 495841 -- 496340
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGT
ATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGT
ATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGT
ACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCAT
ACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA
Found at i:495702 original size:208 final size:203
Alignment explanation
Indices: 495449--495860 Score: 725
Period size: 208 Copynumber: 2.0 Consensus size: 203
495439 AGTCCTGACC
* *
495449 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
495514 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA----TC-A
495579 GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
126 GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
495644 AGGTCAGTACTGA
191 AGGTCAGTACTGA
495657 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* *
495722 TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
* *
495787 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
495852 AGTACTGA
196 AGTACTGA
495860 T
1 T
495861 GACATACAAA
Statistics
Matches: 198, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
203 78 0.39
204 2 0.01
208 118 0.60
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 494949 -- 495448
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTGTG
AAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 495861 -- 496360
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACAT
TGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
Found at i:495735 original size:43 final size:42
Alignment explanation
Indices: 495439--495859 Score: 311
Period size: 43 Copynumber: 10.2 Consensus size: 42
495429 CAGAAGAATG
*** *
495439 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
495482 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * * *
495525 AGTCCTGACCTTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
495563 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
495606 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
495649 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
495690 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
495733 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
495771 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
495809 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
495852 AGTACTGA
1 AGTCCTGA
495860 TGACATACAA
Statistics
Matches: 295, Mismatches: 59, Indels: 48
0.73 0.15 0.12
Matches are distributed among these distances:
33 11 0.04
35 1 0.00
37 6 0.02
38 46 0.16
39 3 0.01
41 30 0.10
42 11 0.04
43 181 0.61
44 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 494939 -- 495438
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGA
CAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGT
CCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 495860 -- 496359
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACA
TTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGT
CAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTG
ACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
Found at i:495927 original size:64 final size:64
Alignment explanation
Indices: 495809--496055 Score: 313
Period size: 64 Copynumber: 3.9 Consensus size: 64
495799 TGGTAAGGTT
* * * * *
495809 AGTCCTGA-CTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACCTTTCAAA-ACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
* * *
495873 AGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACCTTTCAAAACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
**** *
495937 AGTCTTGACCTTT--TTGGA-TCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACCTTTCAAAACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
* *
495998 AGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACAT
1 AGTCTTGACCTTTCAAAACAGTCCTGACCT-TTTTGGTATGGTGAGTACTGATGACAT
496056 TGGTTTGTAC
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
61 52 0.33
62 1 0.01
63 1 0.01
64 72 0.46
65 32 0.20
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (64 bp):
AGTCTTGACCTTTCAAAACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 495309 -- 495808
ACCTTTCAAAAAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 496056 -- 496555
TGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACA
Found at i:496070 original size:28 final size:28
Alignment explanation
Indices: 496039--496161 Score: 123
Period size: 28 Copynumber: 4.5 Consensus size: 28
496029 TTTTGGTATG
496039 GTGAGTACTAATGACATTGGTTTGT-ACA
1 GTGAGTACTAATGACATTGGTTTGTCA-A
*
496067 GTGAGTACTAATGACATTTGTTTGTCAA
1 GTGAGTACTAATGACATTGGTTTGTCAA
* *
496095 GTGAGTACTAATGGCATT-TTGTTGTCAA
1 GTGAGTACTAATGACATTGGT-TTGTCAA
* *
496123 GTGAG-A-GACAT-ACAATTTG-TTGTCAA
1 GTGAGTACTA-ATGAC-ATTGGTTTGTCAA
496149 GTGAGTACTAATG
1 GTGAGTACTAATG
496162 GCATACAATT
Statistics
Matches: 80, Mismatches: 7, Indels: 16
0.78 0.07 0.16
Matches are distributed among these distances:
26 14 0.17
27 10 0.12
28 55 0.69
29 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGACATTGGTTTGTCAA
Left flanking sequence: Indices 495539 -- 496038
AATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 496162 -- 496661
GCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
Found at i:496101 original size:56 final size:54
Alignment explanation
Indices: 496039--496161 Score: 137
Period size: 56 Copynumber: 2.2 Consensus size: 54
496029 TTTTGGTATG
*
496039 GTGAGTACTAATGACATTG-GTTTGT-ACAGTGAG-TACTAATGAC-ATTTGTTTGTCAA
1 GTGAGTACTAATGACATTGTG-TTGTCA-AGTGAGAGAC--AT-ACAATTTG-TTGTCAA
* *
496095 GTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAA
1 GTGAGTACTAATGACATTGTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAA
496149 GTGAGTACTAATG
1 GTGAGTACTAATG
496162 GCATACAATT
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
54 22 0.37
55 7 0.12
56 27 0.45
57 4 0.07
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (54 bp):
GTGAGTACTAATGACATTGTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAA
Left flanking sequence: Indices 495539 -- 496038
AATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 496162 -- 496661
GCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
Found at i:496252 original size:16 final size:16
Alignment explanation
Indices: 496231--496280 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 16
496221 CATTCTCATT
496231 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
496247 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTC---AG
*
496266 AGTCCTCACCTTTCA
1 AGTCCTGACCTTTCA
496281 AGAAGAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 15 0.50
19 15 0.50
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 495731 -- 496230
TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACAT
TGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 496281 -- 496780
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACT
Found at i:496269 original size:19 final size:19
Alignment explanation
Indices: 496231--496364 Score: 94
Period size: 19 Copynumber: 6.7 Consensus size: 19
496221 CATTCTCATT
496231 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
496247 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
*
496266 AGTCCTCACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
496290 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
496309 AGTCTTGACCTTTCAAGAAG
1 AGTCCTGACCTTTCAA-AAG
* *
496329 AATCAGTCCTGACCTTTCAAGAC
1 ----AGTCCTGACCTTTCAAAAG
*
496352 AGTCTTGACCTTT
1 AGTCCTGACCTTT
496365 TTGGTAAGGT
Statistics
Matches: 94, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
16 14 0.15
19 42 0.45
20 2 0.02
21 2 0.02
22 2 0.02
23 3 0.03
24 29 0.31
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 495731 -- 496230
TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACAT
TGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 496365 -- 496864
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGA
CCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTG
Found at i:496300 original size:24 final size:23
Alignment explanation
Indices: 496245--496350 Score: 102
Period size: 24 Copynumber: 4.9 Consensus size: 23
496235 CTGACCTTTC
496245 AGAGTCCTGACCTTTC---AA-A
1 AGAGTCCTGACCTTTCAAGAAGA
*
496264 AGAGTCCTCACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAAGA
496287 ATGAGTCCTGACCTTTC---AAG-
1 A-GAGTCCTGACCTTTCAAGAAGA
* *
496307 ACAGTCTTGACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAAGA
*
496330 ATCAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
496351 CAGTCTTGAC
Statistics
Matches: 72, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
19 28 0.39
20 1 0.01
21 3 0.04
22 5 0.07
23 3 0.04
24 32 0.44
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (23 bp):
AGAGTCCTGACCTTTCAAGAAGA
Left flanking sequence: Indices 495745 -- 496244
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTG
AGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATA
CAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGT
CCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 496351 -- 496850
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTT
CCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
TGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAG
Found at i:496320 original size:43 final size:42
Alignment explanation
Indices: 496247--496607 Score: 219
Period size: 43 Copynumber: 8.7 Consensus size: 42
496237 GACCTTTCAG
* * * * *
496247 AGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATG
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
496290 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** * *
496333 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** *
496376 AGTCCTGACTGTGAAATACAGTCTTGA-C---C-AGAAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * *** * *
496414 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAG-GTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
* * ** * *
496452 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAG-GTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACC-TTTCAAGAAGAATC
* *
496495 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
496536 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
**
496579 AGTCCTGACTGTGAAAGACAGTCTTGACC
1 AGTCCTGACT-TTCAAGACAGTCTTGACC
496608 AGAAGAATCA
Statistics
Matches: 249, Mismatches: 49, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
33 10 0.04
34 1 0.00
37 3 0.01
38 20 0.08
39 3 0.01
40 6 0.02
41 24 0.10
42 8 0.03
43 165 0.66
44 9 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 495747 -- 496246
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAG
TACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACA
ATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCC
TGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 496608 -- 497107
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACC
TTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTT
TGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAA
TGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGT
GAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTT
Found at i:496455 original size:76 final size:78
Alignment explanation
Indices: 496324--496480 Score: 246
Period size: 76 Copynumber: 2.0 Consensus size: 78
496314 TGACCTTTCA
496324 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTG
496389 AAATACAGTCTTGACC
63 AAATACAGTCTTGACC
* * *
496405 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
496468 TACAGTCTTGACC
66 TACAGTCTTGACC
496481 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
76 54 0.74
77 2 0.03
81 17 0.23
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
TACAGTCTTGACC
Left flanking sequence: Indices 495824 -- 496323
ATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAA
AACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTTTGG
ATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAG
TCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAA
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCATT
CCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCA
Right flanking sequence: Indices 496481 -- 496980
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTT
CCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
TGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGT
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGG
CATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACAT
Found at i:496527 original size:19 final size:19
Alignment explanation
Indices: 496503--496567 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
496493 TCAGTACTGA
496503 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
496522 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
496546 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
496565 TTT
1 TTT
496568 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 496003 -- 496502
TGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAG
TGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACA
TACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGA
GTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAA
AAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 496568 -- 497067
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTG
GTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCT
TTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCA
TTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAA
TGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
Found at i:496557 original size:84 final size:86
Alignment explanation
Indices: 496452--496686 Score: 253
Period size: 76 Copynumber: 2.9 Consensus size: 86
496442 TGGTAAGGTT
* **
496452 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TTCAAGACAGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
496515 CTTGACCTTTCAAGAAAAATC
66 CTTGACCTTTCAAGAAAAATC
* * *
496536 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAG
*
496600 TCTTGA-C---C-AGAAGAATC
65 TCTTGACCTTTCAAGAAAAATC
* * * * * *
496617 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
496677 CTTGACCTTT
66 CTTGACCTTT
496687 TTGATAAGGT
Statistics
Matches: 133, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
76 52 0.39
77 2 0.02
81 16 0.12
82 1 0.01
84 42 0.32
85 6 0.05
86 14 0.11
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (86 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGACAGT
CTTGACCTTTCAAGAAAAATC
Left flanking sequence: Indices 495952 -- 496451
GGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAC
AGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGAC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTC
AAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 496687 -- 497186
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCC
TGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTAC
TAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAG
TACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
Found at i:496649 original size:203 final size:203
Alignment explanation
Indices: 496300--496706 Score: 760
Period size: 203 Copynumber: 2.0 Consensus size: 203
496290 AGTCCTGACC
*
496300 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* *
496365 TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
* *
496430 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTC
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
496495 AGTACTGA
196 AGTACTGA
496503 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
496568 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
*
496633 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
496698 AGTACTGA
196 AGTACTGA
496706 T
1 T
496707 GACATACAAA
Statistics
Matches: 198, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 198 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 495800 -- 496299
GGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTTTGGATCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAA
ATGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGT
TTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGT
GAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTT
TCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 496707 -- 497206
GACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGA
GTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTT
TTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGT
CAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTG
ACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACC
TTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTC
Found at i:496902 original size:20 final size:20
Alignment explanation
Indices: 496877--496958 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
496867 TTGTACAGTG
496877 AGTACTAATGGCATATGGAA
1 AGTACTAATGGCATATGGAA
*
496897 AGTACTAATGGCATTTGTTTGCACA
1 AGTACTAATGGCATATG---G-A-A
496922 GTGAGTACTAATGGCATATGGAA
1 ---AGTACTAATGGCATATGGAA
496945 AGTACTAATGGCAT
1 AGTACTAATGGCAT
496959 TTTGTTGTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTACTAATGGCATATGGAA
Left flanking sequence: Indices 496377 -- 496876
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCC
ATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTG
Right flanking sequence: Indices 496959 -- 497458
TTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAAT
GAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAG
TCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCA
TAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:496974 original size:48 final size:48
Alignment explanation
Indices: 496849--496960 Score: 197
Period size: 48 Copynumber: 2.3 Consensus size: 48
496839 TGGTATGGTG
* * *
496849 AGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
496897 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
496945 AGTACTAATGGCATTT
1 AGTACTAATGGCATTT
496961 TGTTGTCAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (48 bp):
AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
Left flanking sequence: Indices 496349 -- 496848
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCT
TTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTG
Right flanking sequence: Indices 496961 -- 497460
TGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTC
CTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATA
ATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
Found at i:497049 original size:24 final size:24
Alignment explanation
Indices: 497021--497066 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
497011 ATACAATTGC
497021 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
497045 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
497067 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 496521 -- 497020
CTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACT
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATG
GTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCAT
TTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGA
GACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 497067 -- 497566
CAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
Found at i:497076 original size:19 final size:19
Alignment explanation
Indices: 497049--497098 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
497039 AAGAAGAATG
*
497049 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
* *
497068 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
497087 AGTCCTGACCTT
1 AGTCCTGACCTT
497099 CCTGACTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 496549 -- 497048
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCA
GAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCCTGACCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCAT
ATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 497099 -- 497598
CCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCC
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
Found at i:497186 original size:43 final size:42
Alignment explanation
Indices: 497139--497310 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
497129 TCCAGAAGAA
*
497139 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
497182 TCAGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
497220 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
497258 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
497301 TGAGTACTGA
1 TCAGTCCTGA
497311 TGACATACAA
Statistics
Matches: 97, Mismatches: 19, Indels: 26
0.68 0.13 0.18
Matches are distributed among these distances:
33 11 0.11
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 2 0.02
43 56 0.58
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 496639 -- 497138
TCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCCAT
CTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAG
TACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGT
TGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTG
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 497311 -- 497810
TGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTC
CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
Found at i:497264 original size:76 final size:78
Alignment explanation
Indices: 497130--497288 Score: 232
Period size: 76 Copynumber: 2.0 Consensus size: 78
497120 CCTGACCTTT
497130 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
*
497195 TGAAATACAGTCTTGA
63 TGAAAGACAGTCTTGA
* * * *
497211 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
497274 AAGACAGTCTTGA
66 AAGACAGTCTTGA
497287 CC
1 CC
497289 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 52 0.71
77 2 0.03
81 19 0.26
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 496630 -- 497129
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTT
TTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCCATCTTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCA
TATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATG
GCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTG
CAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAA
AGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTT
Right flanking sequence: Indices 497289 -- 497788
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTC
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
Found at i:497383 original size:24 final size:24
Alignment explanation
Indices: 497354--497434 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 24
497344 TTCCATAATG
497354 AGTCCTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
497378 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
497397 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
497421 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
497435 AAGACAGTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
19 13 0.26
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 27 0.54
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 496854 -- 497353
TAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGC
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACA
ATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATA
ATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 497435 -- 497934
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGT
Found at i:497405 original size:19 final size:19
Alignment explanation
Indices: 497354--497452 Score: 90
Period size: 19 Copynumber: 4.7 Consensus size: 19
497344 TTCCATAATG
497354 AGTCCTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
497378 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
497397 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
497421 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
497440 AGTCTTGACCTTT
1 AGTCCTGACCTTT
497453 TTGGTAAGGT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
19 26 0.39
20 3 0.04
21 6 0.09
22 3 0.04
23 3 0.04
24 26 0.39
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 496854 -- 497353
TAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGC
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACA
ATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATA
ATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 497453 -- 497952
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:497408 original size:43 final size:43
Alignment explanation
Indices: 497354--497492 Score: 190
Period size: 43 Copynumber: 3.2 Consensus size: 43
497344 TTCCATAATG
*
497354 AGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
497397 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * ** *
497440 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATAC
1 AGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCTTTCAAGAC
497483 AGTCTTGACC
1 AGTCTTGACC
497493 AGAAGAATCA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 84 0.97
44 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 496854 -- 497353
TAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGC
ACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACA
ATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATA
ATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 497493 -- 497992
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
Found at i:497544 original size:76 final size:78
Alignment explanation
Indices: 497376--497568 Score: 237
Period size: 76 Copynumber: 2.4 Consensus size: 78
497366 TCCAGAAGAA
**
497376 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACA
497441 GTCTTGACCTTTTTGGTAAGG
58 GTCTTGACCTTTTTGGTAAGG
* * *
497462 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
497525 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
* *
497538 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACC
497569 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
81 19 0.19
86 26 0.26
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 496876 -- 497375
GAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTA
ATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 497569 -- 498068
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGT
Found at i:497564 original size:43 final size:41
Alignment explanation
Indices: 497516--497612 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
497506 CTGATCAGAT
* * * *
497516 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
497559 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
497600 AGTCTTGACCTTT
1 AGTCTTGACCTTT
497613 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 497016 -- 497515
ATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 497613 -- 498112
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Found at i:497740 original size:43 final size:43
Alignment explanation
Indices: 497693--497845 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 43
497683 ACCTTTCAAG
497693 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
497736 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* * *
497771 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * *
497812 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
497846 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 497193 -- 497692
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 497846 -- 498345
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATAACATTCAGGAAATCGT
CAAAAGTGCTTCCATTGGTCTGAATTAGATTAGCTTCTTTGAAGAAAGAACTCTTTTCATATCTG
AAATTGGCATTACTCCTACTTTGAATAAGCAAACTCGCTTCCTTT
Found at i:497959 original size:19 final size:19
Alignment explanation
Indices: 497892--497964 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
497882 CATTCTCATT
497892 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
497908 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
497932 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
497951 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
497965 CATTTTTGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.26
17 1 0.02
19 14 0.30
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.26
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 497392 -- 497891
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 497965 -- 498464
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATAACATT
CAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATTAGATTAGCTTCTTTGAAGAAAGAACTCT
TTTCATATCTGAAATTGGCATTACTCCTACTTTGAATAAGCAAACTCGCTTCCTTTGGCTTTCAA
TGTCCAGTCCAAACGAACCACTATCAGAGTGAATGTCATTTTGATAAGCTTGATAAGCACTCTTT
GTTCGCTTTTCCCTGAAGCTTCGCTTTGCGAGTGCTTTCTTTTTC
Found at i:498088 original size:43 final size:43
Alignment explanation
Indices: 498041--498154 Score: 192
Period size: 43 Copynumber: 2.7 Consensus size: 43
498031 CTGACCTTTC
* * *
498041 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
498084 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
498127 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
498155 GAGTACTAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 497541 -- 498040
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 498155 -- 498654
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATA
ACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATTAGATTAGCTTCTTTGAAGAAAGA
ACTCTTTTCATATCTGAAATTGGCATTACTCCTACTTTGAATAAGCAAACTCGCTTCCTTTGGCT
TTCAATGTCCAGTCCAAACGAACCACTATCAGAGTGAATGTCATTTTGATAAGCTTGATAAGCAC
TCTTTGTTCGCTTTTCCCTGAAGCTTCGCTTTGCGAGTGCTTTCTTTTTCTTGAAGTTTTTTAGT
TTGCTTTGCTCGTTCCGCTATCGAGCTTTGCCTTCCGCTTTGCGAGGCTTTCTTTATAGGTCCTC
GGAGCTCTTTTCGCCGAGCATTTCACCCTCTTGACTTCGCTACGCTCAGCGGCTCGCCAATAGTT
AAAATTTCTTCTTTGTTGGGAGAATAGTTCCAATGGTAGAACAAT
Found at i:498097 original size:19 final size:19
Alignment explanation
Indices: 498070--498140 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
498060 TGGTCAGGTT
*
498070 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
498089 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
498113 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
498132 AGTCTTGAC
1 AGTCCTGAC
498141 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 5 0.12
22 4 0.10
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 497570 -- 498069
TTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 498141 -- 498640
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATTAGATTAGCT
TCTTTGAAGAAAGAACTCTTTTCATATCTGAAATTGGCATTACTCCTACTTTGAATAAGCAAACT
CGCTTCCTTTGGCTTTCAATGTCCAGTCCAAACGAACCACTATCAGAGTGAATGTCATTTTGATA
AGCTTGATAAGCACTCTTTGTTCGCTTTTCCCTGAAGCTTCGCTTTGCGAGTGCTTTCTTTTTCT
TGAAGTTTTTTAGTTTGCTTTGCTCGTTCCGCTATCGAGCTTTGCCTTCCGCTTTGCGAGGCTTT
CTTTATAGGTCCTCGGAGCTCTTTTCGCCGAGCATTTCACCCTCTTGACTTCGCTACGCTCAGCG
GCTCGCCAATAGTTAAAATTTCTTCTTTGTTGGGAGAATAGTTCC
Found at i:498121 original size:24 final size:24
Alignment explanation
Indices: 498088--498154 Score: 81
Period size: 19 Copynumber: 3.0 Consensus size: 24
498078 CTGTGAAAGA
498088 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* *
498112 CAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
498131 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
498155 GAGTACTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.26
20 3 0.09
21 5 0.15
22 5 0.15
23 3 0.09
24 9 0.26
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 497588 -- 498087
TGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
Right flanking sequence: Indices 498155 -- 498654
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCATA
ACATTCAGGAAATCGTCAAAAGTGCTTCCATTGGTCTGAATTAGATTAGCTTCTTTGAAGAAAGA
ACTCTTTTCATATCTGAAATTGGCATTACTCCTACTTTGAATAAGCAAACTCGCTTCCTTTGGCT
TTCAATGTCCAGTCCAAACGAACCACTATCAGAGTGAATGTCATTTTGATAAGCTTGATAAGCAC
TCTTTGTTCGCTTTTCCCTGAAGCTTCGCTTTGCGAGTGCTTTCTTTTTCTTGAAGTTTTTTAGT
TTGCTTTGCTCGTTCCGCTATCGAGCTTTGCCTTCCGCTTTGCGAGGCTTTCTTTATAGGTCCTC
GGAGCTCTTTTCGCCGAGCATTTCACCCTCTTGACTTCGCTACGCTCAGCGGCTCGCCAATAGTT
AAAATTTCTTCTTTGTTGGGAGAATAGTTCCAATGGTAGAACAAT
Found at i:500330 original size:12 final size:12
Alignment explanation
Indices: 500313--500337 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
500303 CTATCCTTCT
500313 TCAGAAGCAAAA
1 TCAGAAGCAAAA
500325 TCAGAAGCAAAA
1 TCAGAAGCAAAA
500337 T
1 T
500338 GTCTTTCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.12
Consensus pattern (12 bp):
TCAGAAGCAAAA
Left flanking sequence: Indices 499813 -- 500312
CAGTGAACCCAAAGGCTCAACGCTTTGCGATAGGAGCTTGCGCGTGGGCCCAAGCTCTATAGGAA
ATCCAATAGCATAGGCAACGCAGCGGCTACTCTTTTGCTATGGGAGTGATTTTCTTGTAGTTTCG
CTTTTCTTTCTGCTTCTTCCTGTCTTCCCGGGGCGATGATCGAGTCTAGTTCTCGACTCATTGAG
CGAGTATTCACGTATAGTAAATATACAAGGCCCGACGGTGAAGTGAATCTAGATAGAAGGGTCAA
AGGCCCGACGGTGTAGTCTTTCAGATGTCTCAGGTTGCTACGAATCACGCGGTTCCTGGATCGTG
TGATTTTTGGTTTTCATAGGTACATGATGAAAGACTAGTGAATGATCCTCAATTCCGTCAAATGT
GTTCCGTATTCATCCTTCCTTGAGCACCGTTTGCTATTTAGTTTTCTGTGATATTGGCCCTTTTC
CAGATTGTCTGTCTCAATCTCTGAGTGGACGCGCGCTATCCTTCT
Right flanking sequence: Indices 500338 -- 500837
GTCTTTCTTGGGGGCTCTGGGCTTCGTCATTGTTTTCGCTGTGACTTCTCACAGCGGAGGTCGAA
CCCAAGTGACCTACTGCTGGCACGTCTGGAGCTGAAGGCGCATCAAGCGATTCCTCCTTCGCGGA
ACCACGGTCAGAAACTGAGGTCAATCAGCCAACCCCCCCGTGGCAGGCTCTGAAGGCCCAGAGCA
CCAAACGGAATTGACTCGCAATGCGAGCTGAGAAGCCTCCCTCATCAATCGTGACCTCGAAAATG
CAAATAGCATTTGTCTGATACAGGAGAGCCCAGGGGGGCATTGGGAGGCTTTGAAGCAAAGCCTT
TTTCAAGCTTCCTCCCAACTGTCTGATAATGAATGACTTGACTTCGAAAAGAGGGATCTCAGGAT
CCGCGAGCTCAAACACGAGTGTCACACTCTTTTTAAGGACATCCAGAGTTGTTGACAAATTCCCC
CAGCAACTTGAGGCAGACGATGCTTTGACTTTCTTCTTTGACGAG
Found at i:502978 original size:28 final size:28
Alignment explanation
Indices: 502946--503018 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
502936 TGTTGGTATG
*
502946 GTGAGCACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
502974 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
503002 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
503019 ACAATTGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 502446 -- 502945
CAGCGGGAGTGCAGTGATCCGGTTCGATGGTCCCCGGGATGTTTATCCCGGTCTTGTGCATAATA
CCATCCCATTCCGATAGAAGGGGACGGGACAGGCGGTTGGGTGGGAGATCAAAATAGGAGTTGAG
TCAGGTCAGCGATAACCTGAATTCTCCCTCATTCGGGCGGAAATCTACGAGGTCCATACTACTGA
ACTTCACGGAAACCGGCAGGAGGGTCCGTTAGGGCTTCAGGGTTTGATGGGTTGAGCGGGCTTGG
GGCATTTGTTTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGT
CAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAA
AGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 503019 -- 503518
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
Found at i:503180 original size:95 final size:98
Alignment explanation
Indices: 503002--503181 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
502992 TGTTTGTACA
* *
503002 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
503067 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
503101 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
503162 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
503182 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 502502 -- 503001
TGCATAATACCATCCCATTCCGATAGAAGGGGACGGGACAGGCGGTTGGGTGGGAGATCAAAATA
GGAGTTGAGTCAGGTCAGCGATAACCTGAATTCTCCCTCATTCGGGCGGAAATCTACGAGGTCCA
TACTACTGAACTTCACGGAAACCGGCAGGAGGGTCCGTTAGGGCTTCAGGGTTTGATGGGTTGAG
CGGGCTTGGGGCATTTGTTTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGGTCAG
CGCACATGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGA
AGCATTCAAAGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAAT
TTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 503182 -- 503681
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
Found at i:503211 original size:43 final size:42
Alignment explanation
Indices: 503150--503519 Score: 250
Period size: 43 Copynumber: 9.2 Consensus size: 42
503140 TTCCATCAAA
** *
503150 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
503193 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
503236 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
503274 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*** *
503312 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
503355 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
503393 AGTCCTGACTTTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
503431 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
503469 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
503512 AGTACTGA
1 AGTCCTGA
503520 TGACATACAA
Statistics
Matches: 250, Mismatches: 45, Indels: 64
0.70 0.13 0.18
Matches are distributed among these distances:
33 23 0.09
35 2 0.01
37 6 0.02
38 68 0.27
39 9 0.04
40 1 0.00
41 3 0.01
42 5 0.02
43 133 0.53
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 502650 -- 503149
AAACCGGCAGGAGGGTCCGTTAGGGCTTCAGGGTTTGATGGGTTGAGCGGGCTTGGGGCATTTGT
TTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGTCAGCGTACA
TGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTTTGG
TTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGG
CATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 503520 -- 504019
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:503220 original size:19 final size:19
Alignment explanation
Indices: 503193--503263 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
503183 TGGTAAGGTT
503193 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
503212 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
503236 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
503255 AGTCTTGAC
1 AGTCCTGAC
503264 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 502693 -- 503192
TGAGCGGGCTTGGGGCATTTGTTTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGG
TCAGCGCACATGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAA
GCGAAGCATTCAAAGCTTTTGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATA
CAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 503264 -- 503763
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACA
Found at i:503244 original size:24 final size:24
Alignment explanation
Indices: 503168--503244 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
503158 CCTTTCAAGA
* *
503168 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
503192 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
503211 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
503235 CAGTCCTGAC
1 CAGTCCTGAC
503245 TGTGAAATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 502668 -- 503167
GTTAGGGCTTCAGGGTTTGATGGGTTGAGCGGGCTTGGGGCATTTGTTTCCAATCTGAGTTTCCG
GTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGTCAGCGTACATGACTTTGCTTTGCATTT
CATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTTTGGTTGGAACATCAATTTGCA
ATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTG
AGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 503245 -- 503744
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTA
Found at i:503379 original size:81 final size:76
Alignment explanation
Indices: 503212--503497 Score: 473
Period size: 76 Copynumber: 3.7 Consensus size: 76
503202 TGTGAAAGAC
* * *
503212 AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
503277 CCTGATCAGAT
66 CCTGATCAGAT
*
503288 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAA
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGA-C---C-AGAAGAA
503353 TCAGTCCTGATCAGAT
61 TCAGTCCTGATCAGAT
*
503369 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
503434 CCTGATCAGAT
66 CCTGATCAGAT
*
503445 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
1 AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
503498 TTTTTGATAA
Statistics
Matches: 199, Mismatches: 6, Indels: 10
0.93 0.03 0.05
Matches are distributed among these distances:
76 121 0.61
77 2 0.01
80 2 0.01
81 74 0.37
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (76 bp):
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGAT
Left flanking sequence: Indices 502712 -- 503211
TGTTTCCAATCTGAGTTTCCGGTACGAGCCATTTTCAAAGTCAAGGTCAGCGCACATGTCAGCGT
ACATGACTTTGCTTTGCATTTCATCAAAGTGGCTCATGAATCCAAAGCGAAGCATTCAAAGCTTT
TGGTTGGAACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAA
TGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTT
CATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
Right flanking sequence: Indices 503498 -- 503997
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCATAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
Done.