123.fas.2.7.7.80.10.50.500.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  16  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487992--488056	19	3.2	19	76	19	76	32	13	24	29	1.94
488079--488237	76	2.0	79	91	6	261	30	22	20	27	1.98
487853--488259	203	2.0	203	97	0	769	32	21	18	27	1.97
488195--488269	19	3.7	19	78	16	87	30	16	28	25	1.96
487952--488226	127	2.2	117	83	8	309	32	21	20	26	1.97
487871--488293	43	10.4	42	71	15	246	32	20	20	26	1.97
488209--488297	24	3.9	24	75	14	107	26	17	24	30	1.98
488282--488340	28	2.0	28	83	6	73	33	11	32	22	1.90
488328--488358	16	1.9	16	100	0	62	32	16	32	19	1.94
488393--488458	19	3.4	19	79	4	87	27	21	27	24	1.99
488470--488652	28	6.6	28	86	6	203	36	25	10	27	1.89
488584--488669	28	3.1	28	83	6	77	37	26	10	25	1.88
488664--488709	16	2.6	17	80	13	58	30	17	30	21	1.96
488756--488925	43	4.2	42	67	18	117	34	22	17	25	1.96
489092--489726	43	15.0	42	71	14	294	32	19	20	27	1.97
489092--489201	19	5.0	24	66	20	87	37	21	18	22	1.94
488913--489158	119	2.1	116	83	8	306	33	18	22	25	1.97
489188--489286	19	4.7	20	77	17	94	30	16	26	27	1.96
489202--489286	24	3.8	24	78	15	108	28	16	25	29	1.97
489273--489303	16	1.9	16	93	0	53	41	12	29	16	1.85
489487--489769	19	13.7	19	68	22	99	30	17	21	29	1.96
489666--489750	24	3.8	24	80	15	117	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489487--489773	43	6.8	43	78	11	290	30	17	21	29	1.96
489666--489773	24	4.9	24	73	20	110	27	17	23	31	1.97
489783--490198	43	10.2	42	69	14	228	32	20	19	27	1.97
489804--490036	76	2.9	80	83	10	253	33	19	19	27	1.96
489921--489985	19	3.2	19	76	19	76	32	13	24	29	1.94
489782--490188	203	2.0	203	98	0	778	33	20	18	27	1.96
489328--490202	434	2.0	429	88	3	1285	31	20	19	28	1.97
490008--490164	76	2.0	79	86	6	221	31	21	19	28	1.97
490124--490198	19	3.7	19	78	16	87	30	16	26	26	1.96
490138--490222	24	3.8	24	80	15	117	27	17	24	30	1.97
489881--490222	43	8.2	43	74	12	243	31	19	21	27	1.97
490234--490391	28	5.6	28	97	1	291	37	25	11	25	1.89
490530--490742	43	5.2	43	74	14	198	33	23	17	25	1.96
490629--490699	19	3.5	19	70	17	61	29	23	19	26	1.98
490648--490724	24	3.4	24	65	17	65	35	23	19	22	1.96
490850--491008	76	2.0	79	86	6	225	30	20	20	27	1.98
490806--491040	43	5.7	43	72	13	138	33	19	20	26	1.97
490966--491040	19	3.7	19	78	16	87	30	16	28	25	1.96
490983--491068	24	3.8	23	77	16	108	27	16	26	29	1.97
490966--491065	43	2.3	43	94	0	173	29	17	27	27	1.97
491112--491236	43	3.0	43	85	8	143	33	20	21	24	1.97
491206--491236	16	1.9	16	93	0	53	35	16	29	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491320--491350	16	1.9	16	93	0	53	35	16	29	19	1.93
491413--491630	43	5.2	43	75	8	207	34	22	18	25	1.96
491517--491587	19	3.5	19	68	17	52	30	22	19	26	1.98
491762--491816	28	2.0	28	92	0	92	38	27	9	25	1.86
492198--492298	28	3.6	28	98	0	193	25	11	25	36	1.90
492282--492461	95	1.9	98	84	6	251	27	22	17	32	1.96
492444--492647	43	4.9	43	77	8	213	25	17	22	34	1.96
492473--492543	19	3.5	19	68	17	52	26	19	22	30	1.98
492430--492648	81	2.6	82	75	7	210	25	18	21	34	1.96
492693--492723	16	1.9	16	93	0	53	16	29	12	41	1.85
492710--492765	19	2.6	23	81	13	66	25	26	16	32	1.96
492732--492818	43	2.0	43	91	4	140	22	20	20	35	1.96
492862--492950	24	3.9	24	78	14	116	30	25	16	26	1.97
492535--492880	180	2.0	168	83	10	430	25	20	18	34	1.96
492890--492964	19	3.7	19	78	16	87	25	28	16	30	1.96
492865--493130	43	6.3	43	75	9	185	27	21	19	32	1.97
492922--493085	81	2.0	81	92	0	274	28	20	20	31	1.97
492881--493107	124	1.8	124	83	3	305	28	19	20	32	1.97
493210--493362	43	3.8	42	66	19	110	27	15	22	34	1.94
493501--493658	28	5.6	28	97	1	291	25	11	25	37	1.89
493670--493754	24	3.8	24	80	15	117	30	24	17	27	1.97
493694--493768	19	3.7	19	78	16	87	26	26	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493728--493889	81	2.0	81	92	0	270	27	19	19	32	1.97
493912--493976	19	3.2	19	76	19	76	29	24	13	32	1.94
493861--494095	76	2.9	86	80	11	226	27	19	20	33	1.96
493694--494114	43	10.2	42	73	11	311	27	19	20	33	1.96
494122--494205	19	4.2	19	77	16	80	30	22	16	29	1.96
494147--494231	24	3.8	24	78	15	108	31	23	17	27	1.97
494171--494245	19	3.7	19	78	16	87	28	25	16	30	1.96
494128--494245	43	2.7	43	90	2	175	28	23	16	30	1.97
494443--494595	43	3.8	42	68	19	119	26	16	22	33	1.96
494642--494672	16	1.9	16	93	0	53	19	29	16	35	1.93
494642--494766	43	3.0	43	82	8	125	24	21	20	33	1.97
494950--495102	43	3.8	42	67	19	110	26	16	22	34	1.95
495243--495357	43	2.7	43	83	11	125	28	23	18	29	1.98
495411--495495	24	3.8	24	78	15	117	27	28	16	28	1.97
495439--495513	19	3.7	19	78	16	87	25	28	16	30	1.96
495471--495634	81	2.0	81	91	0	265	27	20	20	31	1.97
495657--495721	19	3.2	19	76	19	76	29	24	13	32	1.94
495606--495840	76	2.9	86	82	11	253	27	19	19	34	1.96
495449--495860	208	2.0	203	94	2	725	27	19	19	33	1.96
495439--495859	43	10.2	42	73	11	311	27	19	19	33	1.96
495809--496055	64	3.9	64	84	4	313	26	17	21	34	1.95
496039--496161	28	4.5	28	77	15	123	29	10	24	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496039--496161	56	2.2	54	82	13	137	29	10	24	35	1.89
496231--496280	16	2.9	16	81	16	64	24	32	14	30	1.94
496231--496364	19	6.7	19	73	17	94	27	26	16	29	1.97
496245--496350	24	4.9	23	78	16	102	31	25	16	26	1.97
496247--496607	43	8.7	42	73	11	219	27	21	19	31	1.97
496324--496480	76	2.0	78	90	6	246	27	19	21	32	1.97
496503--496567	19	3.2	19	76	19	76	29	24	13	32	1.94
496452--496686	76	2.9	86	82	11	253	27	19	20	32	1.97
496300--496706	203	2.0	203	97	0	760	27	18	20	33	1.96
496877--496958	20	3.7	20	74	22	83	34	12	24	29	1.91
496849--496960	48	2.3	48	95	0	197	32	11	24	32	1.91
497021--497066	24	1.9	24	100	0	92	32	21	19	26	1.97
497049--497098	19	2.6	19	87	0	73	26	28	16	30	1.96
497139--497310	43	4.2	42	68	18	130	25	18	22	33	1.96
497130--497288	76	2.0	78	87	6	232	27	20	21	30	1.98
497354--497434	24	3.6	24	80	16	118	25	29	16	28	1.96
497354--497452	19	4.7	19	78	17	90	26	28	16	29	1.97
497354--497492	43	3.2	43	89	2	190	25	26	17	29	1.98
497376--497568	76	2.4	78	84	8	237	25	22	19	31	1.98
497516--497612	43	2.3	41	87	3	131	23	16	20	39	1.92
497693--497845	43	3.8	43	68	19	130	26	16	23	33	1.96
497892--497964	19	3.7	19	74	20	62	23	28	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498041--498154	43	2.7	43	94	0	192	24	17	22	35	1.95
498070--498140	19	3.5	19	71	17	61	26	19	22	30	1.98
498088--498154	19	3.0	24	70	20	81	23	17	20	37	1.94
500313--500337	12	2.1	12	100	0	50	56	16	16	12	1.68
502946--503018	28	2.6	28	93	4	121	26	12	26	35	1.91
503002--503181	95	1.9	98	84	6	251	27	22	17	32	1.96
503150--503519	43	9.2	42	69	17	250	26	18	22	32	1.97
503193--503263	19	3.5	19	68	17	52	26	19	22	30	1.98
503168--503244	24	3.4	24	65	17	65	22	19	23	35	1.96
503212--503497	76	3.7	76	92	4	473	26	18	22	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20