Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 14 of 20
Found at i:417210 original size:73 final size:66
Alignment explanation
Indices: 417133--417272 Score: 163
Period size: 73 Copynumber: 2.0 Consensus size: 66
417123 CAAAAATGGA
* *
417133 AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
1 AAGGTCAAGACTCTCTTGAAAGGTCAAGACTG-----TCTTGAAAGGTCAGGACTC-TT-TGGAA
417198 AAGTCAGG
59 AAGTCAGG
* * * *
417206 AAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAG
1 AAGGTCAAGACTCTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTGGAAAAGTCAG
417271 G
66 G
417272 A
1 A
417273 CTCTGAAAGG
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
66 12 0.20
67 2 0.03
68 19 0.31
73 28 0.46
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (66 bp):
AAGGTCAAGACTCTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTGGAAAAGTCAG
G
Left flanking sequence: Indices 416633 -- 417132
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
Right flanking sequence: Indices 417273 -- 417772
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAG
AACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCA
TTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACA
AACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGC
AATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAA
Found at i:417230 original size:19 final size:19
Alignment explanation
Indices: 417206--417290 Score: 122
Period size: 19 Copynumber: 4.6 Consensus size: 19
417196 AAAAGTCAGG
417206 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
* * *
417225 AAGGTCAAGACTGTCTTGA
1 AAGGTCAGGACTCTTTTGA
417244 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTCTTTTGA
417263 AAGGTCAGGACTC---TGA
1 AAGGTCAGGACTCTTTTGA
417279 AAGGTCAGGACT
1 AAGGTCAGGACT
417291 AATGAGAATG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.25
19 45 0.75
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAGGTCAGGACTCTTTTGA
Left flanking sequence: Indices 416706 -- 417205
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 417291 -- 417790
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAATTGTA
TGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAA
ACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCA
TACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAG
CACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAA
Found at i:417357 original size:43 final size:42
Alignment explanation
Indices: 417309--417406 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
417299 TGATTGAGGA
* * *
417309 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
417352 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
417394 AAAGATCAGAACT
1 AAAG-TCAGAACT
417407 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 416809 -- 417308
ATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 417407 -- 417906
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATT
TGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAG
GACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTTGTTGATGGT
CAGCATGAATGGCATCTAATTGCAATTATGGAAGGCATACAATTG
Found at i:417485 original size:28 final size:28
Alignment explanation
Indices: 417462--417633 Score: 183
Period size: 28 Copynumber: 6.5 Consensus size: 28
417452 TGACAATTGT
417462 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
417490 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
417518 ATGCCATTAGTACTCACTTGAC-AACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* *
417545 ATTG-TA-T-GTCTCTCACTTGAC-AACAAA
1 A-TGCCATTAGT-ACTCACTTGACAAAC-AA
*
417572 ATGCCATTAGTACT---TT--C---CAT
1 ATGCCATTAGTACTCACTTGACAAACAA
417592 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAACAA
417620 ATGCCATTAGTACT
1 ATGCCATTAGTACT
417634 TTCCATATGC
Statistics
Matches: 124, Mismatches: 6, Indels: 28
0.78 0.04 0.18
Matches are distributed among these distances:
20 15 0.12
21 1 0.01
23 2 0.02
24 1 0.01
25 5 0.04
26 16 0.13
27 11 0.09
28 71 0.57
29 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 416962 -- 417461
CTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 417634 -- 418133
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTC
TGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGA
CCATACCAAAATCCATCCAAATTTGTTGATGGTCAGCATGAATGGCATCTAATTGCAATTATGGA
AGGCATACAATTGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCAT
AAGCACACTCGCTTCACTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCA
ACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGGTTCACTTT
GCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGCAA
Found at i:417581 original size:54 final size:56
Alignment explanation
Indices: 417462--417633 Score: 183
Period size: 54 Copynumber: 3.2 Consensus size: 56
417452 TGACAATTGT
417462 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
* *
417518 ATGCCATTAGTACTCACTTGAC-AACAAATTG-TA-T-GTCTCTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGCCATTAGT-ACTCACTTGACAAAC-AA
*
417572 ATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT-TGACAAACAA
417620 ATGCCATTAGTACT
1 ATGCCATTAGTACT
417634 TTCCATATGC
Statistics
Matches: 103, Mismatches: 5, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
46 2 0.02
47 4 0.04
48 24 0.23
49 8 0.08
51 2 0.02
53 5 0.05
54 27 0.26
55 7 0.07
56 24 0.23
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 416962 -- 417461
CTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 417634 -- 418133
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTC
TGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGA
CCATACCAAAATCCATCCAAATTTGTTGATGGTCAGCATGAATGGCATCTAATTGCAATTATGGA
AGGCATACAATTGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCAT
AAGCACACTCGCTTCACTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCA
ACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGGTTCACTTT
GCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGCAA
Found at i:417597 original size:20 final size:20
Alignment explanation
Indices: 417572--417653 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
417562 TGACAACAAA
417572 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
417592 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
417620 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
417640 ATGCCATTAGTACT
1 ATGCCATTAGTACT
417654 CACTGTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 417072 -- 417571
GATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGT
CAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAA
GATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 417654 -- 418153
CACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCA
TCTCATTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTT
ATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAA
ATTTGTTGATGGTCAGCATGAATGGCATCTAATTGCAATTATGGAAGGCATACAATTGCCATTAG
TGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCACTTT
GGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGC
TGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGGTTCACTTTGCGAGTGCTTTGTCGATTCG
CTTTGCGAGTGCGTGCTTTGTGCAAAGCACTAGCGAGAAGCTTCC
Found at i:417622 original size:48 final size:48
Alignment explanation
Indices: 417570--417677 Score: 198
Period size: 48 Copynumber: 2.2 Consensus size: 48
417560 CTTGACAACA
*
417570 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
417618 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
*
417666 AAATGTCATTAG
1 AAATGCCATTAG
417678 CCATACCAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.31
Consensus pattern (48 bp):
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
Left flanking sequence: Indices 417070 -- 417569
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAA
GTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAA
GGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGA
AAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATT
GTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
Right flanking sequence: Indices 417678 -- 418177
CCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGT
CAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGA
ATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTTGTTGATGGTCAGCATGAATG
GCATCTAATTGCAATTATGGAAGGCATACAATTGCCATTAGTGCTCCCAATGGCAATTGTATGCC
ATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCACTTTGGCTTTCCAATGTCACGAGCAAAG
CAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTC
GTGACGTGAACGGTTCACTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTGTGCA
AAGCACTAGCGAGAAGCTTCCCTTGGGATTGTTTTCCCAGGCTGT
Found at i:424818 original size:28 final size:28
Alignment explanation
Indices: 424692--424821 Score: 201
Period size: 28 Copynumber: 4.6 Consensus size: 28
424682 TTTTTGGTAT
* *
424692 AGTGAATACTAATGACATTTTGTTGT-A
1 AGTGAGTACTAATGGCATTTTGTTGTCA
*
424719 CAGTGAGTACTAATGACATTTTGTTGTCA
1 -AGTGAGTACTAATGGCATTTTGTTGTCA
424748 AGTGAGTACTAATGGCATTTTGTTGTCA
1 AGTGAGTACTAATGGCATTTTGTTGTCA
424776 AGTGAGTACTAATGGCA-TTTGTTTGTCA
1 AGTGAGTACTAATGGCATTTTG-TTGTCA
424804 AGTGAGTACTAATGGCAT
1 AGTGAGTACTAATGGCAT
424822 ACAATTGTCA
Statistics
Matches: 97, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 4 0.04
28 92 0.95
29 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
AGTGAGTACTAATGGCATTTTGTTGTCA
Left flanking sequence: Indices 424192 -- 424691
GAAATGAGCAAAGCCCCCAGCGTCACGTCACGTCACGAGCAAAGCCCTCTTCACAAGAGGGCTTT
GCTCTGACGTGACCTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAA
TGGATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAATGGCATTGGTTGATGGATAAT
GGCATCTCATTGCAATTTGTGATATGGTCAATGGCATTGGTTGATGGTCAGCATGAATGGCATCT
CATTGCAACCTTTCCTTTCCATCATTTCCGTTAATGAGACTGAAGGTCACTTAACTGATTCAGGT
CAGACAAATCGTTCAAAGTGCTGACCAAAGGATCAATTGGAATTGTATGCCATTATCCATACCAA
AAATGCAATTGTCTTTCTCTTCAATGAAACACTAATGGCATTGGTTGATGCACTAATGGCATACA
ATTTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTGGTAT
Right flanking sequence: Indices 424822 -- 425321
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGT
ACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
Found at i:424939 original size:43 final size:43
Alignment explanation
Indices: 424891--424974 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
424881 CTGATCTTTC
* * *
424891 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
424934 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
424975 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 424391 -- 424890
TCTCATTGCAATTTGTGATATGGTCAATGGCATTGGTTGATGGTCAGCATGAATGGCATCTCATT
GCAACCTTTCCTTTCCATCATTTCCGTTAATGAGACTGAAGGTCACTTAACTGATTCAGGTCAGA
CAAATCGTTCAAAGTGCTGACCAAAGGATCAATTGGAATTGTATGCCATTATCCATACCAAAAAT
GCAATTGTCTTTCTCTTCAATGAAACACTAATGGCATTGGTTGATGCACTAATGGCATACAATTT
GTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTGTT
GTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 424975 -- 425474
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTT
TCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACT
AATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
TCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCC
TGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
Found at i:425014 original size:16 final size:17
Alignment explanation
Indices: 424993--425041 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 17
424983 CATTCTCATT
424993 AGTCCTGACCTTTC-AG
1 AGTCCTGACCTTTCAAG
425009 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTC--AAG
425028 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
425042 CATAAGGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 14 0.47
19 16 0.53
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (17 bp):
AGTCCTGACCTTTCAAG
Left flanking sequence: Indices 424493 -- 424992
GAAGGTCACTTAACTGATTCAGGTCAGACAAATCGTTCAAAGTGCTGACCAAAGGATCAATTGGA
ATTGTATGCCATTATCCATACCAAAAATGCAATTGTCTTTCTCTTCAATGAAACACTAATGGCAT
TGGTTGATGCACTAATGGCATACAATTTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTG
GTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 425042 -- 425541
CATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAA
TGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
Found at i:425153 original size:24 final size:24
Alignment explanation
Indices: 425121--425166 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
425111 ATACAATTGC
425121 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
425145 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
425167 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 424621 -- 425120
ATTGGTTGATGCACTAATGGCATACAATTTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTT
TGGTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGT
GAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTT
CTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAG
TCCTGACCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACA
GTGAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 425167 -- 425666
CAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAG
TCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTG
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
Found at i:425176 original size:19 final size:19
Alignment explanation
Indices: 425149--425218 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
425139 AAGAAGAATG
425149 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
425168 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
425187 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
425206 AGTCTTGACCTTT
1 AGTCCTGACCTTT
425219 TTGGTCAGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 32 0.80
20 1 0.03
21 3 0.08
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 424649 -- 425148
TTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTG
TTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACC
TTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCT
TTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 425219 -- 425718
TTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
CAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:425191 original size:38 final size:38
Alignment explanation
Indices: 425140--425275 Score: 148
Period size: 38 Copynumber: 3.4 Consensus size: 38
425130 TGACCTTTCA
*
425140 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
425178 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
* * * ** *
425216 TTTTTGGTCAG-GTCAGTCCTGACCTTGAAATACAGTCTTGACC
1 -----AG-AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
425259 AGAAGAATCAGTCCTGA
1 AGAAGAATCAGTCCTGA
425276 TCAGATAGTC
Statistics
Matches: 81, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
37 2 0.02
38 48 0.59
43 29 0.36
44 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (38 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 424640 -- 425139
GCATACAATTTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTGGTATAGTGAATACTAAT
GACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTG
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGA
GTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAG
TCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
Right flanking sequence: Indices 425276 -- 425775
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
Found at i:425327 original size:76 final size:78
Alignment explanation
Indices: 425149--425334 Score: 252
Period size: 76 Copynumber: 2.4 Consensus size: 78
425139 AAGAAGAATG
*
425149 AGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTG
*
425213 ACCTTTTTGGTCAGGTC
62 ACCTTTTTGGTAAGGTC
* * * *
425230 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
425293 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
425306 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACTTTGAAAGACAGTCTTGACC
425335 TTTTTGATAA
Statistics
Matches: 95, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
76 51 0.54
77 2 0.02
80 3 0.03
81 39 0.41
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 424649 -- 425148
TTGTGGTATGGTCAGCACTAATGGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTG
TTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACC
TTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCT
TTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 425335 -- 425834
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
Found at i:425375 original size:41 final size:43
Alignment explanation
Indices: 425282--425378 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
425272 CTGATCAGAT
* * * *
425282 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
*
425325 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
425366 AGTCTTGACCTTT
1 AGTCTTGACCTTT
425379 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (43 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
Left flanking sequence: Indices 424782 -- 425281
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTT
CAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTC
CATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAA
TGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 425379 -- 425878
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
Found at i:425682 original size:16 final size:16
Alignment explanation
Indices: 425657--425687 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
425647 TCATTCTCAT
425657 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
425673 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
425688 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 425157 -- 425656
CCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 425688 -- 426187
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
Found at i:425706 original size:24 final size:24
Alignment explanation
Indices: 425674--425754 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
425664 GACCTTTCAT
*
425674 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
425698 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
425717 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
425741 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
425755 AAGACAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 26 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 425174 -- 425673
GACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 425755 -- 426254
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATGG
Found at i:425725 original size:19 final size:23
Alignment explanation
Indices: 425674--425772 Score: 106
Period size: 19 Copynumber: 4.6 Consensus size: 23
425664 GACCTTTCAT
425674 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
425698 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
425717 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
425741 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
425760 AGTCTTGACCTTT
1 AGTCTTGACCTTT
425773 TTGGTCAGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 26 0.39
20 3 0.05
21 6 0.09
22 3 0.05
23 3 0.05
24 25 0.38
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (23 bp):
AGTCTTGACCTTTCCAAAGAATC
Left flanking sequence: Indices 425174 -- 425673
GACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 425773 -- 426272
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGAC
Found at i:425731 original size:43 final size:43
Alignment explanation
Indices: 425658--425772 Score: 200
Period size: 43 Copynumber: 2.7 Consensus size: 43
425648 CATTCTCATT
*
425658 AGTCCTGACCTTTC---ATAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
425698 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
425741 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
425773 TTGGTCAGGT
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 14 0.20
43 57 0.80
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 425158 -- 425657
CTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 425773 -- 426272
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGAC
Found at i:425788 original size:43 final size:42
Alignment explanation
Indices: 425696--425868 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 42
425686 TCCAGAAGAA
* *** *
425696 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
425739 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
425782 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
425825 TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAGG
425868 T
1 T
425869 GAGTACTAAT
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 4 0.03
43 109 0.94
44 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 425196 -- 425695
CTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 425869 -- 426368
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATGGAAAA
TGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAG
AGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTT
Found at i:425789 original size:86 final size:86
Alignment explanation
Indices: 425698--425861 Score: 217
Period size: 86 Copynumber: 1.9 Consensus size: 86
425688 CAGAAGAATC
* **
425698 AGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCCAGAAGAATCAGTCCTGACCT-TTCAAGAC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTCCAGAAG-ATCAGTCCTGA-CTGTGAAAGAC
425760 AGTCTTGACCTTTTTGGTCAGGTT
63 AGTCTTGACCTTTTTGGTCAGGTT
** * *
425784 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTCCAGAAGATCAGTCCTGACTGTGAAAGACAGT
425849 CTTGACCTTTTTG
66 CTTGACCTTTTTG
425862 ATAAGGTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
85 6 0.09
86 55 0.81
87 7 0.10
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (86 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTCCAGAAGATCAGTCCTGACTGTGAAAGACAGT
CTTGACCTTTTTGGTCAGGTT
Left flanking sequence: Indices 425198 -- 425697
TTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTC
TCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATC
Right flanking sequence: Indices 425862 -- 426361
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGA
TGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACC
TTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCAT
Found at i:425830 original size:24 final size:24
Alignment explanation
Indices: 425759--425868 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 24
425749 CCTTTCAAGA
* *
425759 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
425783 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
425802 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
425826 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
425845 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
425869 GAGTACTAAT
Statistics
Matches: 62, Mismatches: 14, Indels: 20
0.65 0.15 0.21
Matches are distributed among these distances:
19 17 0.27
20 5 0.08
21 8 0.13
22 9 0.15
23 6 0.10
24 17 0.27
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 425259 -- 425758
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 425869 -- 426368
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATGGAAAA
TGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAG
AGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTT
Found at i:426096 original size:43 final size:42
Alignment explanation
Indices: 426035--426204 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
426025 TTCCATCAAA
**
426035 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
426078 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* *
426116 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
426154 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
426197 AGTACTGA
1 AGTCCTGA
426205 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.54
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 425535 -- 426034
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 426205 -- 426704
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAAT
GACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGAC
CTTTCAAAAGAATCCTGACCTTTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTT
GATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGAC
Found at i:426331 original size:19 final size:19
Alignment explanation
Indices: 426307--426360 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
426297 CATTCTCATT
*
426307 AGTCCTGACCTTTCCAGAG
1 AGTCCTGACCTTTCCAAAG
*
426326 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCCAAAG
*
426345 AATCCTGACCTTTCCA
1 AGTCCTGACCTTTCCA
426361 TAATTTTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTTCCAAAG
Left flanking sequence: Indices 425807 -- 426306
TTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATGGAAAATGG
CATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 426361 -- 426860
TAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Found at i:426564 original size:28 final size:28
Alignment explanation
Indices: 426407--426554 Score: 296
Period size: 28 Copynumber: 5.3 Consensus size: 28
426397 TTTGATGGAA
426407 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
426435 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
426463 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
426491 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
426519 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
426547 AATGGCAT
1 AATGGCAT
426555 ACAATTGTCA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 120 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.39
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 425907 -- 426406
TCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTA
AGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCAT
AATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAA
Right flanking sequence: Indices 426555 -- 427054
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATG
Found at i:426672 original size:43 final size:43
Alignment explanation
Indices: 426624--426705 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
426614 CTGATCTTTC
* * *
426624 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
426667 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
426706 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 426124 -- 426623
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTACTCATTGTTGATG
GAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTTTGTATTAATGCCATA
GTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 426706 -- 427205
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
Found at i:426747 original size:16 final size:16
Alignment explanation
Indices: 426726--426756 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
426716 CATTCTCATT
426726 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
426742 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
426757 AGAAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 426226 -- 426725
ATGGTAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTC
CTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCT
TTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 426757 -- 427256
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAG
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
Found at i:426922 original size:43 final size:42
Alignment explanation
Indices: 426861--427030 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
426851 TTCCATCAAA
**
426861 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
** *
426904 AGTCCTGACTGTGAAAGACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* * *
426942 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
426980 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
427023 AGTACTGA
1 AGTCCTGA
427031 TGACATACAA
Statistics
Matches: 97, Mismatches: 17, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
33 11 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 53 0.55
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 426361 -- 426860
TAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 427031 -- 427530
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
Found at i:427136 original size:19 final size:19
Alignment explanation
Indices: 427108--427183 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
427098 CTTCCATAAT
427108 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
427127 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
427150 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
427170 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
427184 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 426608 -- 427107
GAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 427184 -- 427683
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAGATTCCATCACCTTTCCA
TGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTT
Found at i:427154 original size:24 final size:24
Alignment explanation
Indices: 427105--427169 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
427095 GTCCTTCCAT
427105 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
427126 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
427148 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
427170 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 426605 -- 427104
GAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 427170 -- 427669
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAGATT
CCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTC
Found at i:427166 original size:43 final size:42
Alignment explanation
Indices: 427105--427556 Score: 314
Period size: 43 Copynumber: 10.9 Consensus size: 42
427095 GTCCTTCCAT
427105 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
427148 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* **
427192 -GTCAGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAG
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * ***
427229 AATCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAG
1 AATCAGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * ** *
427268 -GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
1 AATCAGTCCTGACTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* * *
427311 -GTCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AATCAGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAG
427351 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAG
*** *
427394 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * ** *
427438 -GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
1 AATCAGTCCTGACTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* ** *
427481 -GTCAGTCCTGACTGTGAAATACAGTCTTGA-C---C-AGAAG
1 AATCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTCAAGAAG
* *
427518 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
1 AATCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTCAA
427557 AAAAGGTGAG
Statistics
Matches: 328, Mismatches: 53, Indels: 56
0.75 0.12 0.13
Matches are distributed among these distances:
33 11 0.03
34 1 0.00
37 7 0.02
38 43 0.13
39 6 0.02
40 6 0.02
41 25 0.08
42 10 0.03
43 205 0.62
44 14 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (42 bp):
AATCAGTCCTGACTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 426605 -- 427104
GAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 427557 -- 428056
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAG
ATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTTTGT
TTTTGACTTTGGTTGAAAAGAAAGTGGGTTTCGGGGGTTCGGTTCATTGATTAGTCAACCTCCGG
TGCTGGTAAGGTCGGGACCGTGGTCGTCCGTATCCGGTTTGCCGGCCGATAAGATCTCTTAGATT
GACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTATCTGCGCGAG
TCACCTTCTTTTCTTCTAGGCTCTGAGTCGCCTTCTTCTAAGCTCCGCTGGACGACACGGCATTC
TCGTTCAAATATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATATTCCCACCTAGGTC
TACGTTGCCACGATCTTTTTCTATGGAAGCGGGCGGGTGAAGAGT
Found at i:427222 original size:19 final size:19
Alignment explanation
Indices: 427108--427223 Score: 52
Period size: 19 Copynumber: 5.6 Consensus size: 19
427098 CTTCCATAAT
**
427108 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTGAAAGA
* *
427127 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACC-TT-GA-AAG-A
**
427150 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTGAAAGA
* * *
427170 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACC---TT-G-AAAGA
427194 CAGTCCTGACCTTGAAAGA
1 CAGTCCTGACCTTGAAAGA
*
427213 CAGTCTTGACC
1 CAGTCCTGACC
427224 AGAAGAATCA
Statistics
Matches: 72, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
19 33 0.46
20 4 0.06
21 5 0.07
22 5 0.07
23 3 0.04
24 22 0.31
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (19 bp):
CAGTCCTGACCTTGAAAGA
Left flanking sequence: Indices 426608 -- 427107
GAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 427224 -- 427723
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGA
TCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGAC
TTTTCAAGATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTT
TCTTTTGTTTTTGACTTTGGTTGAAAAGAAAGTGGGTTTCGGGGG
Found at i:427346 original size:19 final size:19
Alignment explanation
Indices: 427322--427429 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
427312 TCAGTACTGA
427322 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
427341 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
427365 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
427384 TTTCAAGAAGAATCAGTCCTGACC
1 TTTC---AAG-A-CAGTCTTGACC
427408 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
427427 TTT
1 TTT
427430 TTGGTCAGGT
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 34 0.45
20 2 0.03
21 3 0.04
22 3 0.04
23 2 0.03
24 31 0.41
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 426822 -- 427321
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAG
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 427430 -- 427929
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAGATT
CCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTTTGTTTT
TGACTTTGGTTGAAAAGAAAGTGGGTTTCGGGGGTTCGGTTCATTGATTAGTCAACCTCCGGTGC
TGGTAAGGTCGGGACCGTGGTCGTCCGTATCCGGTTTGCCGGCCGATAAGATCTCTTAGATTGAC
CAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTATCTGCGCGAGTCA
CCTTCTTTTCTTCTAGGCTCTGAGTCGCCTTCTTCTAAGCTCCGC
Found at i:427363 original size:24 final size:23
Alignment explanation
Indices: 427330--427415 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
427320 GATTTCAAGA
*
427330 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
427354 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
*
427373 CAGTCTTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
427397 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
427416 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.31
20 1 0.02
23 1 0.02
24 35 0.65
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 426830 -- 427329
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 427416 -- 427915
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
TGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCT
GACTTTTCAAGATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGC
TTTTCTTTTGTTTTTGACTTTGGTTGAAAAGAAAGTGGGTTTCGGGGGTTCGGTTCATTGATTAG
TCAACCTCCGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTATCCGGTTTGCCGGCCGATAAGA
TCTCTTAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCT
ATCTGCGCGAGTCACCTTCTTTTCTTCTAGGCTCTGAGTCGCCTT
Found at i:427468 original size:19 final size:19
Alignment explanation
Indices: 427441--427511 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
427431 TGGTCAGGTT
427441 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
427460 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
* *
427484 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
427503 AGTCTTGAC
1 AGTCCTGAC
427512 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 16 0.40
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 426941 -- 427440
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 427512 -- 428011
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAGATTCCATCACCTTTCCATGA
GCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTTTGTTTTTGACTTTGGTTGAAAAG
AAAGTGGGTTTCGGGGGTTCGGTTCATTGATTAGTCAACCTCCGGTGCTGGTAAGGTCGGGACCG
TGGTCGTCCGTATCCGGTTTGCCGGCCGATAAGATCTCTTAGATTGACCAGCCAGCTGGGTTGGT
TTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTATCTGCGCGAGTCACCTTCTTTTCTTCTAGG
CTCTGAGTCGCCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCTCGTTCAAATATAGGCCGGC
CGTACTTGTGATGGTTCCCCAGGATCCAATATTCCCACCTAGGTC
Found at i:427487 original size:24 final size:24
Alignment explanation
Indices: 427416--427492 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
427406 CCTTTCAAGA
* * *
427416 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
427440 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
427459 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
427483 CAGTCCTGAC
1 CAGTCCTGAC
427493 TGTGAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
21 4 0.10
22 5 0.13
23 3 0.08
24 17 0.44
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 426916 -- 427415
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 427493 -- 427992
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACTTTTCAAGA
TTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTTTGTT
TTTGACTTTGGTTGAAAAGAAAGTGGGTTTCGGGGGTTCGGTTCATTGATTAGTCAACCTCCGGT
GCTGGTAAGGTCGGGACCGTGGTCGTCCGTATCCGGTTTGCCGGCCGATAAGATCTCTTAGATTG
ACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTATCTGCGCGAGT
CACCTTCTTTTCTTCTAGGCTCTGAGTCGCCTTCTTCTAAGCTCCGCTGGACGACACGGCATTCT
CGTTCAAATATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATC
Found at i:429317 original size:12 final size:12
Alignment explanation
Indices: 429300--429325 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
429290 TATCTTATTT
429300 TAGAAGATTATA
1 TAGAAGATTATA
429312 TAGAAGATTATA
1 TAGAAGATTATA
429324 TA
1 TA
429326 TTATAGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (12 bp):
TAGAAGATTATA
Left flanking sequence: Indices 428800 -- 429299
TTGGCTCCCAGCTCCATCTCGGCCGGCATCCAGCTCTCGAGGGGGTGGGGTCCTGGAGCGAACTA
CTCATTTGCTGTGTTGCCCCAACCCAAGGGCGTTTGGTGAGGAGGTCCGGTGGAAGCCACTTCGA
GGAGGCGACTGGACTGGAGTGCTTTCTTTCATCAAATGATGCATGTGGGCTCCGCCATTCCCATC
CCAAGTGGAGACAAGGTCGGGAAGATCTTTCTCAGAAAGAAGATCTAATATCTTTCGTCATATAT
AATCTTCTCATTTCGATTAGTCATCTTCTCATTTCGATGAGAATCTGAGATATTCTCAAGTCTAT
TCTTCTTTCTGAGATTCTTCATCTTAGATTATATTAGAAGATTCTCAGATGATATCTTTATCATT
TAGATTATCATCTTATATGAGAAGGTTATATATGATATGAGAATCTATTATATATTAGATTGATC
ATTGATTCTTATAAGAAAGAAGAATCTATCTTTCTTATCTTATTT
Right flanking sequence: Indices 429326 -- 429825
TTATAGGAAGAAGATATAAGATATATGAAGAATATCAGACAATTCTTCTTTCTTAGATTCTGAAT
CTTTGATATTAGAATATGCTATCCGGGAATGAATTTCTATCTATGTTAGCTAGCGGGGGTGGGCT
TTCCTCTGGTAGTCCCGCTTCGGCCTCTGACCGTCCGTCCCGTCTCATCTTTCTTTGGCTCACCT
TTTCGCCAGCCATGTTAGCTCCACATGAGACCCTTTGTCTATGGCCTAAAAAGGCACTCATCAGT
CCGCTCGGCCCCCTTCCTATTCCGCTTTGCCGCCGGCGCTATGGTGGTCCCGTTAAAGTGGCCCG
CCTTTAGTCATCTATACCAGCGACCCGGGAAGGAACGATTTCTTCGCAGCGCCCCTCTCTAGATA
AGAAGCAGAAGAGGCGCGCCATCACCTACAGCCCTTTCCTCTGCCGGGCACTTCCACGAAATGAA
AACGGGCGGCATCGTCGTATGCTCGACATTTGTTGCCCTGGTGTA
Found at i:431377 original size:37 final size:37
Alignment explanation
Indices: 431325--431395 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
431315 ATGCTTATGC
* *
431325 TTTTTGGTATGGTCAGCACTAATGGCATACAATTGCA
1 TTTTTGATATAGTCAGCACTAATGGCATACAATTGCA
431362 TTTTTGATATAGTCAGCACTAATGGCATACAATT
1 TTTTTGATATAGTCAGCACTAATGGCATACAATT
431396 TGTGGTATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (37 bp):
TTTTTGATATAGTCAGCACTAATGGCATACAATTGCA
Left flanking sequence: Indices 430825 -- 431324
CAGTGGTTCCTCATCCCATTCTCCCACTCGCCGCCCCCAACTCAGACCGGAAAACCCGGAGGAAC
AAAGGAAACAAGCCCAACCAAAACGATCCGACAACGGATCGTCATAGTAGACGATCAATTAGCAG
TTATATGTCGCCAGCCTTGCATGAATCGATCAATCTGGGGGGAAGATGGAACCTTGTTGTTTGAC
TTTCGGGCAGAGCGAGTGGACCTAGCTTGGCTCTAGATTGATGATGTGCATATTCTGTGAGGCCC
GAGAATCGACGAAGGAAGGGGCCAGTGTGGAGGGTCGCATCAAAACACAACAATATCCTTTCTTC
TCATTCTGACCCTTGGTCACAGTCAGAAACCTGTCTGAACCTTGACTTTTCTCTGACCTGTCTTA
ACCAACGTCATGAGCAAAGCCCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTAATATCGTGACG
ACTCAAGGGAAGCCAAAGCGAAGCGAGCTTTTGTAATGCTTATGC
Right flanking sequence: Indices 431396 -- 431895
TGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTGTTGTAC
AGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAA
AAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCT
GACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTAAATTTCAAAAG
AGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
Found at i:431418 original size:32 final size:34
Alignment explanation
Indices: 431329--431421 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 34
431319 TTATGCTTTT
*
431329 TGGTATGGTCAGCACTAATGGCATACAATTGCATTTT
1 TGGTATGGTCAGCACTAATGGCATACAA-T--ATTTG
* *
431366 TGATATAGTCAGCACTAATGGCATAC-A-ATTTG
1 TGGTATGGTCAGCACTAATGGCATACAATATTTG
431398 TGGTATGGTCAGCA-TGAATGGCAT
1 TGGTATGGTCAGCACT-AATGGCAT
431422 CTTTTTGGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
31 1 0.02
32 24 0.48
36 1 0.02
37 24 0.48
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (34 bp):
TGGTATGGTCAGCACTAATGGCATACAATATTTG
Left flanking sequence: Indices 430829 -- 431328
GGTTCCTCATCCCATTCTCCCACTCGCCGCCCCCAACTCAGACCGGAAAACCCGGAGGAACAAAG
GAAACAAGCCCAACCAAAACGATCCGACAACGGATCGTCATAGTAGACGATCAATTAGCAGTTAT
ATGTCGCCAGCCTTGCATGAATCGATCAATCTGGGGGGAAGATGGAACCTTGTTGTTTGACTTTC
GGGCAGAGCGAGTGGACCTAGCTTGGCTCTAGATTGATGATGTGCATATTCTGTGAGGCCCGAGA
ATCGACGAAGGAAGGGGCCAGTGTGGAGGGTCGCATCAAAACACAACAATATCCTTTCTTCTCAT
TCTGACCCTTGGTCACAGTCAGAAACCTGTCTGAACCTTGACTTTTCTCTGACCTGTCTTAACCA
ACGTCATGAGCAAAGCCCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTAATATCGTGACGACTC
AAGGGAAGCCAAAGCGAAGCGAGCTTTTGTAATGCTTATGCTTTT
Right flanking sequence: Indices 431422 -- 431921
CTTTTTGGTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCCTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
Found at i:431559 original size:28 final size:28
Alignment explanation
Indices: 431433--431562 Score: 201
Period size: 28 Copynumber: 4.6 Consensus size: 28
431423 TTTTTGGTAT
* *
431433 AGTGAATACTAATGACATTTTGTTGT-A
1 AGTGAGTACTAATGGCATTTTGTTGTCA
*
431460 CAGTGAGTACTAATGACATTTTGTTGTCA
1 -AGTGAGTACTAATGGCATTTTGTTGTCA
431489 AGTGAGTACTAATGGCATTTTGTTGTCA
1 AGTGAGTACTAATGGCATTTTGTTGTCA
431517 AGTGAGTACTAATGGCA-TTTGTTTGTCA
1 AGTGAGTACTAATGGCATTTTG-TTGTCA
431545 AGTGAGTACTAATGGCAT
1 AGTGAGTACTAATGGCAT
431563 ACAATTGTCA
Statistics
Matches: 97, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 4 0.04
28 92 0.95
29 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
AGTGAGTACTAATGGCATTTTGTTGTCA
Left flanking sequence: Indices 430933 -- 431432
ATAGTAGACGATCAATTAGCAGTTATATGTCGCCAGCCTTGCATGAATCGATCAATCTGGGGGGA
AGATGGAACCTTGTTGTTTGACTTTCGGGCAGAGCGAGTGGACCTAGCTTGGCTCTAGATTGATG
ATGTGCATATTCTGTGAGGCCCGAGAATCGACGAAGGAAGGGGCCAGTGTGGAGGGTCGCATCAA
AACACAACAATATCCTTTCTTCTCATTCTGACCCTTGGTCACAGTCAGAAACCTGTCTGAACCTT
GACTTTTCTCTGACCTGTCTTAACCAACGTCATGAGCAAAGCCCACAAAGCACTCGCAAAGCGTA
GGGCTTTGCTAATATCGTGACGACTCAAGGGAAGCCAAAGCGAAGCGAGCTTTTGTAATGCTTAT
GCTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCATTTTTGATATAGTCAGCACTAATGGC
ATACAATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTAT
Right flanking sequence: Indices 431563 -- 432062
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
Found at i:431680 original size:43 final size:43
Alignment explanation
Indices: 431632--431715 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
431622 CTGATCTTTC
* * *
431632 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
431675 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
431716 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 431132 -- 431631
CAACAATATCCTTTCTTCTCATTCTGACCCTTGGTCACAGTCAGAAACCTGTCTGAACCTTGACT
TTTCTCTGACCTGTCTTAACCAACGTCATGAGCAAAGCCCACAAAGCACTCGCAAAGCGTAGGGC
TTTGCTAATATCGTGACGACTCAAGGGAAGCCAAAGCGAAGCGAGCTTTTGTAATGCTTATGCTT
TTTGGTATGGTCAGCACTAATGGCATACAATTGCATTTTTGATATAGTCAGCACTAATGGCATAC
AATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTGTT
GTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 431716 -- 432215
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGG
AATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTAAATTTC
AAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTAT
GGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATC
ATTGTCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGAC
Found at i:431775 original size:19 final size:16
Alignment explanation
Indices: 431734--431764 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
431724 CATTCTCATT
431734 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
431750 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
431765 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 431234 -- 431733
CCCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTAATATCGTGACGACTCAAGGGAAGCCAAAGC
GAAGCGAGCTTTTGTAATGCTTATGCTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCATT
TTTGATATAGTCAGCACTAATGGCATACAATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTG
GTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 431765 -- 432264
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTC
CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTC
CTGACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTC
TGACTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGACATAC
AAATGAGTCTTGACCTTTCCATAATGAGTCCTGACCTTTCAAGAA
Found at i:431922 original size:43 final size:43
Alignment explanation
Indices: 431875--432044 Score: 148
Period size: 43 Copynumber: 4.2 Consensus size: 43
431865 AAGAAGAATG
*
431875 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
431918 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
431956 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
431994 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
432037 AGTACTGA
1 AGTCCTGA
432045 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 4 0.04
43 53 0.54
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 431375 -- 431874
CAGCACTAATGGCATACAATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTATAGTGAAT
ACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGC
ATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTG
TCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAG
ACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATG
Right flanking sequence: Indices 432045 -- 432544
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTG
AGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTG
TCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGACATACAAATGAGTCTTGACCTTTCC
ATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
Found at i:432278 original size:24 final size:24
Alignment explanation
Indices: 432246--432330 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
432236 TTCCATAATG
432246 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
432270 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
432289 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
432313 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
432331 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.59
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 431746 -- 432245
TCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTC
CTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGC
ATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATG
GTGAGTACTAATGACATACAAATGAGTCTTGACCTTTCCATAATG
Right flanking sequence: Indices 432331 -- 432830
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTT
Found at i:432297 original size:19 final size:19
Alignment explanation
Indices: 432246--432344 Score: 90
Period size: 24 Copynumber: 4.7 Consensus size: 19
432236 TTCCATAATG
432246 AGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
432270 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
432289 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
432313 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
432332 AGTCTTGACCTTT
1 AGTCCTGACCTTT
432345 TTGGTAAGGT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
19 27 0.40
20 2 0.03
21 6 0.09
22 3 0.04
23 1 0.01
24 28 0.42
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 431746 -- 432245
TCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTC
CTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGC
ATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATG
GTGAGTACTAATGACATACAAATGAGTCTTGACCTTTCCATAATG
Right flanking sequence: Indices 432345 -- 432844
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATAA
Found at i:432302 original size:43 final size:43
Alignment explanation
Indices: 432246--432384 Score: 199
Period size: 43 Copynumber: 3.2 Consensus size: 43
432236 TTCCATAATG
*
432246 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
432289 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * **
432332 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAAGAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGAC
432375 AGTCTTGACC
1 AGTCTTGACC
432385 AGAAGAATCA
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 85 0.97
44 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 431746 -- 432245
TCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTC
CTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGC
ATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATG
GTGAGTACTAATGACATACAAATGAGTCTTGACCTTTCCATAATG
Right flanking sequence: Indices 432385 -- 432884
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTC
CATAACCTTTCCCAAATTTGCTTTCCTTTCCATAAGCTAATGCCA
Found at i:432383 original size:19 final size:19
Alignment explanation
Indices: 432269--432384 Score: 52
Period size: 19 Copynumber: 5.6 Consensus size: 19
432259 CAAGAAGAAT
**
432269 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTGAAAGA
* *
432288 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACC-TT-GA-AAG-A
**
432311 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTGAAAGA
* * *
432331 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACC---TT-G-AAAGA
432355 CAGTCCTGACCTTGAAAGA
1 CAGTCCTGACCTTGAAAGA
*
432374 CAGTCTTGACC
1 CAGTCCTGACC
432385 AGAAGAATCA
Statistics
Matches: 72, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
19 33 0.46
20 4 0.06
21 5 0.07
22 5 0.07
23 3 0.04
24 22 0.31
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (19 bp):
CAGTCCTGACCTTGAAAGA
Left flanking sequence: Indices 431769 -- 432268
AGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTCCTGA
CTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGAC
TTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGACATACAAAT
GAGTCTTGACCTTTCCATAATGAGTCCTGACCTTTCAAGAAGAAT
Right flanking sequence: Indices 432385 -- 432884
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTC
CATAACCTTTCCCAAATTTGCTTTCCTTTCCATAAGCTAATGCCA
Found at i:432436 original size:76 final size:79
Alignment explanation
Indices: 432268--432460 Score: 241
Period size: 76 Copynumber: 2.4 Consensus size: 79
432258 TCAAGAAGAA
**
432268 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGA-C---CAAGAAGAATCAGTCCTGA-C--TCAAGACA
432333 GTCTTGACCTTTTTGGTAAGG
59 GTCTTGACCTTTTTGGTAAGG
*
432354 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGA
*
432416 TCTTTTTGGTAAGG
66 CCTTTTTGGTAAGG
*
432430 TTAGTCCTGA-CTGTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCT-TGAAAGACAGTCTTGACC
432461 TTTTTGATAA
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
75 2 0.02
76 51 0.50
77 2 0.02
81 17 0.17
82 1 0.01
85 1 0.01
86 27 0.27
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (79 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGA
CCTTTTTGGTAAGG
Left flanking sequence: Indices 431768 -- 432267
GAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTG
ACCTTTAAATTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTCCTG
ACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGA
CTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGACATACAAA
TGAGTCTTGACCTTTCCATAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 432461 -- 432960
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATAACCTTTC
CCAAATTTGCTTTCCTTTCCATAAGCTAATGCCATTCAAAGTTGTCCCTAACGCTTTGCGAGTGC
TTTGACAGTCTCTTTCATCGCAATCTTCCCCGTTCAAGAAGAACT
Found at i:432456 original size:43 final size:41
Alignment explanation
Indices: 432408--432504 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 41
432398 CTGATCAGAT
* * * *
432408 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TGAAAGAC
**
432451 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
432492 AGTCTTGACCTTT
1 AGTCTTGACCTTT
432505 CCATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 19 0.40
42 1 0.02
43 28 0.58
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
Left flanking sequence: Indices 431908 -- 432407
TGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGG
TATGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATGACAATGAGTTCTGACTTTTCCTCA
ATCATTGTCATTAGTCCTGACCTTTTTGGTATGGTGAGTACTAATGACATACAAATGAGTCTTGA
CCTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 432505 -- 433004
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTT
TTCAAGATTCCATAACCTTTCCCAAATTTGCTTTCCTTTCCATAAGCTAATGCCATTCAAAGTTG
TCCCTAACGCTTTGCGAGTGCTTTGACAGTCTCTTTCATCGCAATCTTCCCCGTTCAAGAAGAAC
TGTTTTCGTGATCGAATTACGAAAGAGATATACGAACTGTATAGG
Found at i:432632 original size:43 final size:43
Alignment explanation
Indices: 432568--432737 Score: 148
Period size: 43 Copynumber: 4.2 Consensus size: 43
432558 TTCCATCAAA
*
432568 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
432611 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
432649 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
432687 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
432730 AGTACTGA
1 AGTCCTGA
432738 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 3 0.03
38 22 0.22
39 3 0.03
41 1 0.01
42 4 0.04
43 53 0.54
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 432068 -- 432567
TTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAAT
GGCATATAATGACAATGAGTTCTGACTTTTCCTCAATCATTGTCATTAGTCCTGACCTTTTTGGT
ATGGTGAGTACTAATGACATACAAATGAGTCTTGACCTTTCCATAATGAGTCCTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 432738 -- 433237
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATAACCTTTCCCAAATTTGCTTTCCTT
TCCATAAGCTAATGCCATTCAAAGTTGTCCCTAACGCTTTGCGAGTGCTTTGACAGTCTCTTTCA
TCGCAATCTTCCCCGTTCAAGAAGAACTGTTTTCGTGATCGAATTACGAAAGAGATATACGAACT
GTATAGGATCATTCGCTGGAATGGGATAAGTGATTCTTTGATAGGATCCCGAAGGGATATTCGAA
TCCACTGAGGATGCAATAGGTATTTGTGATCGATCAGCTTCAAGTATGACCGAGGACTTTCTATC
TGCATCCATAATTACTACACAAGATGGTGGTTGGTTCGACCCGAAATGGATCTTCTTCTTTCTCG
AACGGATCCTTTTCGGAAACAAATGACTTGAACAATTGGTCAAAA
Found at i:432827 original size:19 final size:17
Alignment explanation
Indices: 432784--432851 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 17
432774 CATTCTCATT
432784 AGTCCTGACCTTT-CAG
1 AGTCCTGACCTTTCCAG
*
432800 AGTCTTGACCTTTCCAG
1 AGTCCTGACCTTTCCAG
* *
432817 AAAGTCCTGACTTTTCAAG
1 --AGTCCTGACCTTTCCAG
* *
432836 ATTCCATAACCTTTCC
1 AGTCC-TGACCTTTCC
432852 CAAATTTGCT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
16 12 0.30
17 7 0.17
18 7 0.17
19 14 0.35
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (17 bp):
AGTCCTGACCTTTCCAG
Left flanking sequence: Indices 432284 -- 432783
AAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 432852 -- 433351
CAAATTTGCTTTCCTTTCCATAAGCTAATGCCATTCAAAGTTGTCCCTAACGCTTTGCGAGTGCT
TTGACAGTCTCTTTCATCGCAATCTTCCCCGTTCAAGAAGAACTGTTTTCGTGATCGAATTACGA
AAGAGATATACGAACTGTATAGGATCATTCGCTGGAATGGGATAAGTGATTCTTTGATAGGATCC
CGAAGGGATATTCGAATCCACTGAGGATGCAATAGGTATTTGTGATCGATCAGCTTCAAGTATGA
CCGAGGACTTTCTATCTGCATCCATAATTACTACACAAGATGGTGGTTGGTTCGACCCGAAATGG
ATCTTCTTCTTTCTCGAACGGATCCTTTTCGGAAACAAATGACTTGAACAATTGGTCAAAAACCC
CCCGATCCTCCATTGATCATCATTGATACAGCCGATTCTCGTCGCCATTTGTTCCATTATCTCAT
CGAATAACGAATTGGTATTGACAAAGAAGGAACGGCCTTTTTGAC
Found at i:439851 original size:68 final size:68
Alignment explanation
Indices: 439742--439874 Score: 257
Period size: 68 Copynumber: 2.0 Consensus size: 68
439732 TGATTTTCTA
*
439742 TTCACTCATGATCTGGCCGTCAAGTGTAGTCTACTAAAAGAGACTACAGGTCGACCCGATCATGA
1 TTCACTCATGATCTGGCCGTCAAGTGTAGTCTACTAAAAGAGACTACAGGTCGACCCAATCATGA
439807 TAT
66 TAT
439810 TTCACTCATGATCTGGCCGTCAAGTGTAGTCTACTAAAAGAGACTACAGGTCGACCCAATCATGA
1 TTCACTCATGATCTGGCCGTCAAGTGTAGTCTACTAAAAGAGACTACAGGTCGACCCAATCATGA
439875 GTTGGAAGGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (68 bp):
TTCACTCATGATCTGGCCGTCAAGTGTAGTCTACTAAAAGAGACTACAGGTCGACCCAATCATGA
TAT
Left flanking sequence: Indices 439242 -- 439741
CCCACACCTGTGTAGAGTAGATCGTTCCACACCTGCGGCACAAACCAATTTTTGACCCATTGGCC
CTAGTATCATAGGCGACCGAACGGCCGCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAGATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCAAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGGGAAAGAGGTTCTTTGAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACAATCCCACTACATCAGGGCCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACAGCAATGTACGTTTTTGATTTTCTA
Right flanking sequence: Indices 439875 -- 440374
GTTGGAAGGATGGGACCTTTTCTCGAAAAACTCCTTATCCTGTGTCCAGAAAGTTGATCTCTTCC
ATTCCGACTGAATGGCTAGTGAAAACAACTCTATTAAGAAAAGAAGGTGGGTTCCGTCCAGGAAT
GGCTAGTGTGAAACCCGGACTCGCGGAGGTTCACACATTGTTACGCAATGTCTGGTATCAAAAGA
TCTGATAGCAAGATTGGGTTCAGTTAAGCTATCATGTCAGTTCTGATGTCCTCTTCCTCTTTTTT
CTTCAGTCTGTCTGACCCATTCGGATTTCATTTTTCCATCTGTCAAAAAGTGGAATCAGTGAGCG
CAGGTACCCTAGGGTGAGTGGCTTTAGAGGGAATAGGGGCTATCGCCGCCTTGTATAGGAATCGC
TGTATCACTCCGGGTACACCCCCTGTGATACGGGCGGAACACTGACAGGCCTGCCAAATGCCATC
ACCCAACTACAGCCGTATGGTGTGTCAACAACCAAGGAAGAATCA
Found at i:441780 original size:29 final size:29
Alignment explanation
Indices: 441736--441815 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
441726 ATTCCAATTG
*
441736 GGTATGGTGAGCACTAATGGCATTTGTTT
1 GGTATGGTGAGTACTAATGGCATTTGTTT
*
441765 GGTATGGTGAGTACTAATGACATTTGTTT
1 GGTATGGTGAGTACTAATGGCATTTGTTT
**
441794 -GTACAGTGAGTACTAATGGCAT
1 GGTATGGTGAGTACTAATGGCAT
441816 ATGGAAAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 19 0.41
29 27 0.59
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.36
Consensus pattern (29 bp):
GGTATGGTGAGTACTAATGGCATTTGTTT
Left flanking sequence: Indices 441236 -- 441735
CGGCTATATAGCCTGCACCGAATCGAAGGGGCGTGAGGTAACTGACTGTCAAGTGGTTCCTTTGA
TCTTCTCGCCCGTACCGAAGGTGGCACTACTGACTCAGAAGGATAGTCTAGCTCACTACCTTTTC
TGAGAGTTGGGGGTTAATACCGAAACTGCTCTGAAGTTTGCGAACCTTATAGTCTTCGGCGGAGC
CGGCTACTTAGGCTGTCGGAAATCTCCTTTCTTGGTTAGGGGCGAACATCCAACTACAAATGACT
AAGGAACTAATAGATAGACCAAGCCTTCATTTGAACCATGGAATTCGTCTCTAGAGTTCTGACCG
TCTAAAGGCTTTCTTTCGTTTCAAACTTATCTTCCCCTTCCATTCTCGTATCAAAGAATTTTGAT
GCCTTGCGTTATTCCTCTGTGTCCGTTTCTATCAGTTTCTGATGTTGTTGCTAGTCTTGTTTGAA
TTTTGTTGGTATTTTTTGATGGATAATGGCATACAATTCCAATTG
Right flanking sequence: Indices 441816 -- 442315
ATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAATCAA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATG
Found at i:441926 original size:24 final size:24
Alignment explanation
Indices: 441898--441986 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
441888 ATACAATTGC
441898 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
*
441922 AATGAGTCCTGACCTTTC---AAT
1 AATGAGTCCTGACCTTTCAAGAAG
*
441943 CA--AGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
441965 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
441987 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 14 0.25
21 3 0.05
22 3 0.05
24 36 0.64
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 441398 -- 441897
GAAGTTTGCGAACCTTATAGTCTTCGGCGGAGCCGGCTACTTAGGCTGTCGGAAATCTCCTTTCT
TGGTTAGGGGCGAACATCCAACTACAAATGACTAAGGAACTAATAGATAGACCAAGCCTTCATTT
GAACCATGGAATTCGTCTCTAGAGTTCTGACCGTCTAAAGGCTTTCTTTCGTTTCAAACTTATCT
TCCCCTTCCATTCTCGTATCAAAGAATTTTGATGCCTTGCGTTATTCCTCTGTGTCCGTTTCTAT
CAGTTTCTGATGTTGTTGCTAGTCTTGTTTGAATTTTGTTGGTATTTTTTGATGGATAATGGCAT
ACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACAT
TTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGA
GACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 441987 -- 442486
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTG
Found at i:441950 original size:43 final size:43
Alignment explanation
Indices: 441902--442001 Score: 166
Period size: 43 Copynumber: 2.3 Consensus size: 43
441892 AATTGCAATG
441902 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAATCA-
1 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA-CAC
*
441945 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAACAC
*
441988 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
442002 CATTTTTGGT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
42 1 0.02
43 53 0.98
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAACAC
Left flanking sequence: Indices 441402 -- 441901
TTTGCGAACCTTATAGTCTTCGGCGGAGCCGGCTACTTAGGCTGTCGGAAATCTCCTTTCTTGGT
TAGGGGCGAACATCCAACTACAAATGACTAAGGAACTAATAGATAGACCAAGCCTTCATTTGAAC
CATGGAATTCGTCTCTAGAGTTCTGACCGTCTAAAGGCTTTCTTTCGTTTCAAACTTATCTTCCC
CTTCCATTCTCGTATCAAAGAATTTTGATGCCTTGCGTTATTCCTCTGTGTCCGTTTCTATCAGT
TTCTGATGTTGTTGCTAGTCTTGTTTGAATTTTGTTGGTATTTTTTGATGGATAATGGCATACAA
TTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGT
TTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACA
TACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 442002 -- 442501
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTG
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTC
CTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTG
ATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
Found at i:442111 original size:138 final size:141
Alignment explanation
Indices: 441868--442138 Score: 313
Period size: 138 Copynumber: 1.9 Consensus size: 141
441858 ACAATTTGTT
441868 GTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
1 GTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAA-GAGTCCTG
* **
441933 ACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT-TTCAAGACAGTCTTGAC
65 ACCTTTCAAACAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA-CTGTGAAAGACAGTCTTGAC
441997 CTTTCCATTTTTG
129 CTTTCCATTTTTG
* * * **
442010 GTCAGGTGAGTACTAATGGCATACAATTGCAATTG-GTCCTGTCC-TTCCATCA-AA-AGTCCTG
1 GTCAAGTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTGACCTTTCAAGAAGAAGAGTCCTG
* *** * * *
442071 ACCTTTCAAGAC-AGTCTTGACCTTTTTGGTCAG-GTTAGTCCTGACTGTGAAAGACAGTCTTGA
65 ACCTTTCAA-ACAAGTCCTGACCTTTCAAG-AAGAATGAGTCCTGACTGTGAAAGACAGTCTTGA
442134 CCTTT
128 CCTTT
442139 TTGATAAGGT
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
137 2 0.02
138 57 0.52
139 3 0.03
140 2 0.02
141 5 0.05
142 39 0.35
143 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (141 bp):
GTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAAGAGTCCTGA
CCTTTCAAACAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTCCATTTTTG
Left flanking sequence: Indices 441368 -- 441867
AGAGTTGGGGGTTAATACCGAAACTGCTCTGAAGTTTGCGAACCTTATAGTCTTCGGCGGAGCCG
GCTACTTAGGCTGTCGGAAATCTCCTTTCTTGGTTAGGGGCGAACATCCAACTACAAATGACTAA
GGAACTAATAGATAGACCAAGCCTTCATTTGAACCATGGAATTCGTCTCTAGAGTTCTGACCGTC
TAAAGGCTTTCTTTCGTTTCAAACTTATCTTCCCCTTCCATTCTCGTATCAAAGAATTTTGATGC
CTTGCGTTATTCCTCTGTGTCCGTTTCTATCAGTTTCTGATGTTGTTGCTAGTCTTGTTTGAATT
TTGTTGGTATTTTTTGATGGATAATGGCATACAATTCCAATTGGGTATGGTGAGCACTAATGGCA
TTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAA
GTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTT
Right flanking sequence: Indices 442139 -- 442638
TTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCT
TTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCT
TTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTT
TGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGACTTT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAG
Found at i:442125 original size:43 final size:43
Alignment explanation
Indices: 442078--442181 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
442068 CTGACCTTTC
* * *
442078 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
442121 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
442164 AATACAGTCTTGACCTTT
1 AAGACAGTCTTGACCTTT
442182 CAAGAAGAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 441578 -- 442077
GTTTCAAACTTATCTTCCCCTTCCATTCTCGTATCAAAGAATTTTGATGCCTTGCGTTATTCCTC
TGTGTCCGTTTCTATCAGTTTCTGATGTTGTTGCTAGTCTTGTTTGAATTTTGTTGGTATTTTTT
GATGGATAATGGCATACAATTCCAATTGGGTATGGTGAGCACTAATGGCATTTGTTTGGTATGGT
GAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTT
GTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 442182 -- 442681
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCC
AGAGAGTCCTGACCTTTCCATAACCTTTCCATAAATGGTCTTCAT
Found at i:442134 original size:19 final size:19
Alignment explanation
Indices: 442107--442177 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
442097 TGGTCAGGTT
442107 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
442126 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
442150 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
442169 AGTCTTGAC
1 AGTCCTGAC
442178 CTTTCAAGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 441607 -- 442106
CGTATCAAAGAATTTTGATGCCTTGCGTTATTCCTCTGTGTCCGTTTCTATCAGTTTCTGATGTT
GTTGCTAGTCTTGTTTGAATTTTGTTGGTATTTTTTGATGGATAATGGCATACAATTCCAATTGG
GTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTG
AGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGT
TGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 442178 -- 442677
CTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTC
ATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAG
TACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTG
ATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCC
TGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCCAGAGAGTCCTGACCTTTCCATAACCTTTCCATAAATGGTCT
Found at i:442195 original size:43 final size:43
Alignment explanation
Indices: 442107--442200 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
442097 TGGTCAGGTT
** * *
442107 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTCAAGAAGATC
*
442150 AGTCCTGACTGTGAAATACAGTCTTGACC-TTTCAAGAAGAATC
1 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTCAAGAAG-ATC
442193 AGTCCTGA
1 AGTCCTGA
442201 TCTTTCAAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
42 7 0.16
43 38 0.84
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (43 bp):
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTCAAGAAGATC
Left flanking sequence: Indices 441607 -- 442106
CGTATCAAAGAATTTTGATGCCTTGCGTTATTCCTCTGTGTCCGTTTCTATCAGTTTCTGATGTT
GTTGCTAGTCTTGTTTGAATTTTGTTGGTATTTTTTGATGGATAATGGCATACAATTCCAATTGG
GTATGGTGAGCACTAATGGCATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTG
AGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGT
TGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 442201 -- 442700
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCT
TTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAGAAGGTGAGTTCTGAC
TTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCC
ATAACCTTTCCATAAATGGTCTTCATTGTTTGCAGCTGCATCCTG
Found at i:442299 original size:28 final size:29
Alignment explanation
Indices: 442256--442375 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
442246 GTTGATGGAA
442256 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
442284 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
442312 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
442340 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
442368 AATGGCAT
1 AATGGCAT
442376 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 441756 -- 442255
CATTTGTTTGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATG
GCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAATCAAGTCCT
GACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 442376 -- 442875
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTCCATAACCTTTCCATAAATGGTCTTCATTGTTTGCAGCTGCATCCTG
GTCCTTCTTTGGCCGATGGTGTGTCTTTGTCGGAGAAGCCTCTTTATCTCTCTGAGATATGTAGT
TATGATTGTCTGGCCGCTGGGGGAGCCTTGTTTTTCATTCGATCCATGGATGACTGCTTTTTTTC
TCTTCCATGATGGGAGCAATGGTTCTCTCTATGGCTTTGTGCGAA
Found at i:442525 original size:43 final size:43
Alignment explanation
Indices: 442445--442526 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
442435 CTGATCTTTC
* * *
442445 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTGAGTCCTGACTGTGA
*
442488 AAGACAGTCTTGACCTTTTTGAG-AAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTG-GTAAGGTGAGTCCTGACT
442527 TTTCCTCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 441945 -- 442444
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTT
TCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 442527 -- 443026
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCCA
TAACCTTTCCATAAATGGTCTTCATTGTTTGCAGCTGCATCCTGGTCCTTCTTTGGCCGATGGTG
TGTCTTTGTCGGAGAAGCCTCTTTATCTCTCTGAGATATGTAGTTATGATTGTCTGGCCGCTGGG
GGAGCCTTGTTTTTCATTCGATCCATGGATGACTGCTTTTTTTCTCTTCCATGATGGGAGCAATG
GTTCTCTCTATGGCTTTGTGCGAATCTCTTTCTTTGTGTTGAATGTTGAATCTTTCGCAATGAGC
CTTTTCGGTTTGTTTGGGGCGAAAAAGGGGAGCGGTCGAGTGCTCATCGAAACAAAGATGAGTTG
GTCGAGTTGATTCCATCTCCTTTCCCCCACCCGAGCCTCTTGAAT
Found at i:442588 original size:19 final size:16
Alignment explanation
Indices: 442547--442577 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
442537 CATTCTCATT
442547 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
442563 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
442578 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 442047 -- 442546
CCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGAGAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 442578 -- 443077
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTCCATAACCTTTCCATAAATGGTCTTCATTGTTTGCAGCTGCATCCTGGTCCTTC
TTTGGCCGATGGTGTGTCTTTGTCGGAGAAGCCTCTTTATCTCTCTGAGATATGTAGTTATGATT
GTCTGGCCGCTGGGGGAGCCTTGTTTTTCATTCGATCCATGGATGACTGCTTTTTTTCTCTTCCA
TGATGGGAGCAATGGTTCTCTCTATGGCTTTGTGCGAATCTCTTTCTTTGTGTTGAATGTTGAAT
CTTTCGCAATGAGCCTTTTCGGTTTGTTTGGGGCGAAAAAGGGGAGCGGTCGAGTGCTCATCGAA
ACAAAGATGAGTTGGTCGAGTTGATTCCATCTCCTTTCCCCCACCCGAGCCTCTTGAATAGGAAG
TAGAGAGACCTGCCGAGTAGCATGGATTTTCTCTTGAGCAGGAGG
Found at i:443313 original size:28 final size:28
Alignment explanation
Indices: 443281--443353 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
443271 TGTTGGTATG
*
443281 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
*
443309 GTGAGTACTCATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
443337 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
443354 ACAATTGCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.36
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 442781 -- 443280
GCTGGGGGAGCCTTGTTTTTCATTCGATCCATGGATGACTGCTTTTTTTCTCTTCCATGATGGGA
GCAATGGTTCTCTCTATGGCTTTGTGCGAATCTCTTTCTTTGTGTTGAATGTTGAATCTTTCGCA
ATGAGCCTTTTCGGTTTGTTTGGGGCGAAAAAGGGGAGCGGTCGAGTGCTCATCGAAACAAAGAT
GAGTTGGTCGAGTTGATTCCATCTCCTTTCCCCCACCCGAGCCTCTTGAATAGGAAGTAGAGAGA
CCTGCCGAGTAGCATGGATTTTCTCTTGAGCAGGAGGATATTGAAATCAAAGTGGATGAGCCGAA
ACAAACAATAGCACACACCTTATAGAAAAGAAAAAAACGGAGAGTGATCGACAAAGCACTCGCAA
CTTTCATTTTCAGGACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 443354 -- 443853
ACAATTGCAATTAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAA
Found at i:443621 original size:43 final size:43
Alignment explanation
Indices: 443574--443777 Score: 224
Period size: 43 Copynumber: 4.9 Consensus size: 43
443564 CTGACCTTTC
*
443574 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
443617 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * * **
443660 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGATCT-TTC
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGA
* **
443698 AAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
443741 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
443778 TGACATACAA
Statistics
Matches: 130, Mismatches: 22, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
37 3 0.02
38 22 0.17
39 2 0.02
42 2 0.02
43 98 0.75
44 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 443074 -- 443573
GAGGATATTGAAATCAAAGTGGATGAGCCGAAACAAACAATAGCACACACCTTATAGAAAAGAAA
AAAACGGAGAGTGATCGACAAAGCACTCGCAACTTTCATTTTCAGGACATCAATTTGCAATTGTC
ATGGATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACT
CATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGT
ACAGTGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 443778 -- 444277
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTG
AATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
Found at i:443630 original size:19 final size:19
Alignment explanation
Indices: 443603--443673 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
443593 TGGTAAGGTT
443603 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
443622 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
443646 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
443665 AGTCTTGAC
1 AGTCCTGAC
443674 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 443103 -- 443602
GAAACAAACAATAGCACACACCTTATAGAAAAGAAAAAAACGGAGAGTGATCGACAAAGCACTCG
CAACTTTCATTTTCAGGACATCAATTTGCAATTGTCATGGATTTTTGAAGGCATACAATTTGTTG
TATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCAT
TTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCA
ATTAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 443674 -- 444173
CAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCAT
AATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
Found at i:443654 original size:24 final size:24
Alignment explanation
Indices: 443578--443654 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
443568 CCTTTCAAGA
* *
443578 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* * *
443602 TAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
443621 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
443645 CAGTCCTGAC
1 CAGTCCTGAC
443655 TGTGAAATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 3 0.08
21 3 0.08
22 4 0.11
23 3 0.08
24 17 0.45
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.35
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 443078 -- 443577
ATATTGAAATCAAAGTGGATGAGCCGAAACAAACAATAGCACACACCTTATAGAAAAGAAAAAAA
CGGAGAGTGATCGACAAAGCACTCGCAACTTTCATTTTCAGGACATCAATTTGCAATTGTCATGG
ATTTTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATACAATTGCAATTAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 443655 -- 444154
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACC
GGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTAT
GGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCA
ATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
Found at i:443948 original size:28 final size:28
Alignment explanation
Indices: 443916--444101 Score: 313
Period size: 28 Copynumber: 6.6 Consensus size: 28
443906 TGTTGGTATG
*
443916 GTGAGCACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
443944 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
*
443972 GTGAGTACTCATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
444000 GTGAGTACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
444028 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
*
444056 GTGAGTACTCATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
444084 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
444102 GAATTGCAAT
Statistics
Matches: 150, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
27 1 0.01
28 147 0.98
29 2 0.01
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 443416 -- 443915
TGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 444102 -- 444601
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAG
Found at i:444020 original size:84 final size:84
Alignment explanation
Indices: 443916--444101 Score: 363
Period size: 84 Copynumber: 2.2 Consensus size: 84
443906 TGTTGGTATG
*
443916 GTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
1 GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
443981 CATGGCATTTGTTTGTCAA
66 CATGGCATTTGTTTGTCAA
444000 GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
1 GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
444065 CATGGCATTTGTTTGTCAA
66 CATGGCATTTGTTTGTCAA
444084 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
444102 GAATTGCAAT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 101 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.38
Consensus pattern (84 bp):
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
CATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 443416 -- 443915
TGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 444102 -- 444601
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAG
Found at i:444137 original size:24 final size:24
Alignment explanation
Indices: 444113--444197 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
444103 AATTGCAATG
*
444113 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
444137 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
444156 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
444180 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
444198 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 443613 -- 444112
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATG
AGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTT
TGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 444198 -- 444697
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGT
Found at i:444164 original size:19 final size:19
Alignment explanation
Indices: 444137--444211 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
444127 AAGAAGAATG
444137 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
444156 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
444180 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
444199 AGTCTTGACCTTT
1 AGTCCTGACCTTT
444212 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 443637 -- 444136
GATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 444212 -- 444711
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
Found at i:444303 original size:76 final size:78
Alignment explanation
Indices: 444137--444327 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
444127 AAGAAGAATG
**
444137 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
444202 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
444223 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
444286 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
444299 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
444328 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 443637 -- 444136
GATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 444328 -- 444827
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT
Found at i:444374 original size:19 final size:19
Alignment explanation
Indices: 444350--444414 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
444340 TCAGTACTGA
444350 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
444369 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
444393 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
444412 TTT
1 TTT
444415 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 443850 -- 444349
GGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTAT
GGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCA
ATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 444415 -- 444914
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTT
TCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
Found at i:444428 original size:43 final size:42
Alignment explanation
Indices: 444137--444552 Score: 273
Period size: 43 Copynumber: 10.2 Consensus size: 42
444127 AAGAAGAATG
* *** *
444137 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
444180 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
444223 AGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
444261 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
444299 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *** * **
444342 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
444383 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
444426 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
444464 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
444502 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
444545 AGTACTGA
1 AGTCCTGA
444553 TGACATACAA
Statistics
Matches: 289, Mismatches: 56, Indels: 56
0.72 0.14 0.14
Matches are distributed among these distances:
33 22 0.08
35 1 0.00
37 6 0.02
38 42 0.15
39 6 0.02
41 30 0.10
42 7 0.02
43 172 0.60
44 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 443637 -- 444136
GATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATATTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 444553 -- 445052
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAA
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCA
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Found at i:444496 original size:203 final size:203
Alignment explanation
Indices: 444147--444553 Score: 778
Period size: 203 Copynumber: 2.0 Consensus size: 203
444137 AGTCCTGACC
*
444147 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
444212 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
*
444277 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
444342 AGTACTGA
196 AGTACTGA
444350 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
444415 TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
*
444480 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
444545 AGTACTGA
196 AGTACTGA
444553 T
1 T
444554 GACATACAAA
Statistics
Matches: 200, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
203 200 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 443647 -- 444146
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGAT
ATTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
ATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAG
TCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCAT
GTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 444554 -- 445053
GACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
Found at i:444587 original size:19 final size:19
Alignment explanation
Indices: 444566--444683 Score: 83
Period size: 19 Copynumber: 5.7 Consensus size: 19
444556 CATACAAATG
* *
444566 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
*
444585 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-C
*
444609 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
444628 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AA-AA-C
*
444652 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
444671 AGTCTTGACCTTT
1 AGTCCTGACCTTT
444684 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 20
0.74 0.07 0.18
Matches are distributed among these distances:
19 38 0.47
20 3 0.04
21 4 0.05
22 4 0.05
23 4 0.05
24 28 0.35
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 444066 -- 444565
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 444684 -- 445183
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTAC
TGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGAC
Found at i:444616 original size:24 final size:23
Alignment explanation
Indices: 444562--444666 Score: 100
Period size: 24 Copynumber: 4.8 Consensus size: 23
444552 ATGACATACA
*
444562 AATGAGTCTTGACCTTTC--AA-
1 AATGAGTCCTGACCTTTCAGAAG
444582 AA-GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTC-AGAAG
444605 AATGAGTCCTGACCTTTC--AAG
1 AATGAGTCCTGACCTTTCAGAAG
* *
444626 -A-CAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTT-CAGAAG
*
444648 AATCAGTCCTGACCTTTCA
1 AATGAGTCCTGACCTTTCA
444667 AGACAGTCTT
Statistics
Matches: 71, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
19 26 0.37
20 4 0.06
21 3 0.04
22 5 0.07
23 5 0.07
24 28 0.39
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (23 bp):
AATGAGTCCTGACCTTTCAGAAG
Left flanking sequence: Indices 444062 -- 444561
ACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 444667 -- 445166
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAA
Found at i:444618 original size:43 final size:43
Alignment explanation
Indices: 444562--444891 Score: 272
Period size: 43 Copynumber: 7.8 Consensus size: 43
444552 ATGACATACA
* * * *
444562 AATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
444605 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
444648 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * **
444692 -GTTAGTCCTGA-CTGTGAAAGACAGTCTTGA-C---C-AGAAG
1 AATGAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTCAAGAAG
* * * *
444729 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * *
444770 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
444813 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * *
444857 -GTCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
444892 TTGATAAGGT
Statistics
Matches: 240, Mismatches: 30, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
37 3 0.01
38 23 0.10
39 3 0.01
41 34 0.14
42 12 0.05
43 160 0.67
44 5 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 444062 -- 444561
ACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 444892 -- 445391
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
Found at i:444714 original size:193 final size:190
Alignment explanation
Indices: 444453--445081 Score: 645
Period size: 193 Copynumber: 3.4 Consensus size: 190
444443 ACAGTCTTGA
* *
444453 CCAGAAGAATCAGTCCTGA--TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTTCAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
444516 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
66 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
444581 AAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
131 AAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
444641 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C-TTC-AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
* * * * * * *
444706 TGAAAGACAGTCTTGACC------AGAAGAATCAGTCCTGAT--CTTTCAAGAT-AGTCTTGATC
63 TGAAAGACAGTCTTGACCTTTTTGATAAG-GTGAGTACTGATGACATACAA-ATGAGTCTTGACC
* * *
444762 TTTCAAAAAAGGTCAGTACTGA--TTTC---AAG-A-CAGTCTTGACCTTTCAAGAAAAATCAGT
126 TTTC--AAAA-G--AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG----A-CAGT
*
444820 CCTGACCTTT
181 CTTGACCTTT
* *
444830 -C--AAG-A-CAG---T--CTT--G--A--C----C-TTTTTGGTAAGGTCAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTTCAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
444874 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
66 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
*
444939 ATCA-AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
131 A-AAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
444999 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
1 CCAGAAGAATCAGTCCTGA-C-TTC-AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
*
445064 TGAAATACAGTCTTGACC
63 TGAAAGACAGTCTTGACC
445082 AGAAGAATCA
Statistics
Matches: 354, Mismatches: 29, Indels: 111
0.72 0.06 0.22
Matches are distributed among these distances:
165 41 0.12
166 1 0.00
167 7 0.02
169 17 0.05
170 14 0.04
171 7 0.02
172 25 0.07
173 2 0.01
174 20 0.06
177 3 0.01
178 1 0.00
180 1 0.00
181 3 0.01
184 20 0.06
185 2 0.01
186 25 0.07
187 6 0.02
188 35 0.10
189 18 0.05
191 7 0.02
192 3 0.01
193 96 0.27
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (190 bp):
CCAGAAGAATCAGTCCTGACTTCAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
AAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Left flanking sequence: Indices 443953 -- 444452
AATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCA
GTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGA
Right flanking sequence: Indices 445082 -- 445581
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCA
Found at i:444808 original size:19 final size:19
Alignment explanation
Indices: 444784--444848 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
444774 TCAGTACTGA
444784 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
444803 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
444827 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
444846 TTT
1 TTT
444849 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 444284 -- 444783
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGA
Right flanking sequence: Indices 444849 -- 445348
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
Found at i:444888 original size:358 final size:357
Alignment explanation
Indices: 444299--445246 Score: 1481
Period size: 358 Copynumber: 2.7 Consensus size: 357
444289 TGGTAAGGTT
* * * * **
444299 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTTCAAGACAGT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTGAAAGACAGT
* * * * *****
444362 CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
65 CTTGA-C---C-AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCA
* * * * *
444427 GTCCTGACTTTGAAATACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA----TC-AGATAGTC
125 GTACTGA-TTT-CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
* *
444482 TTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
188 TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
444547 TACTGATGACATACAAATGAGTCTTGACCTTTCAA-AAGAGTCCTGACCTTTCAAGAAGAATGAG
253 TACTGATGACATACAAATGAGTCTTGACCTTTCAATAA-AGTCCTGACCTTTCAAGAAGAATGAG
444611 TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
317 TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
444652 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACT-TGAAAGACAGT
444717 CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACT
65 CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACT
444782 GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
130 GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
*
444847 TTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
195 TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
*
444912 GACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
260 GACATACAAATGAGTCTTGACCTTTCAATAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
444977 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
325 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
*
445010 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC-TTGAAAGACAGT
445075 CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACT
65 CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACT
445140 GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
130 GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
445205 TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
195 TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
445247 AGAAGAATCA
Statistics
Matches: 554, Mismatches: 26, Indels: 25
0.92 0.04 0.04
Matches are distributed among these distances:
348 12 0.02
349 4 0.01
350 50 0.09
351 1 0.00
352 1 0.00
353 58 0.10
354 6 0.01
355 14 0.03
357 2 0.00
358 404 0.73
359 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (357 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTGAAAGACAGTC
TTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAATAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 443799 -- 444298
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTG
TCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATG
GCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTCATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTCATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 445247 -- 445746
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCCATAACAT
TCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCA
TTGTATGCCATTATCCATAAAAAAAAGGAGATGCCATTAGTGCTG
Found at i:444975 original size:24 final size:24
Alignment explanation
Indices: 444938--445027 Score: 109
Period size: 24 Copynumber: 3.9 Consensus size: 24
444928 TTGACCTTTC
444938 AATCAAGTCCTGACCTTTCAAGAAG
1 AATC-AGTCCTGACCTTTCAAGAAG
*
444963 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
* *
444984 -A-CAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
445006 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
445028 CAGTCTTGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
19 13 0.24
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 31 0.56
25 3 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 444438 -- 444937
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
TTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
Right flanking sequence: Indices 445028 -- 445527
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
TGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
CAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
Found at i:444994 original size:19 final size:19
Alignment explanation
Indices: 444967--445041 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
444957 AAGAAGAATG
444967 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
444986 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
445010 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
445029 AGTCTTGACCTTT
1 AGTCCTGACCTTT
445042 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 444467 -- 444966
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 445042 -- 445541
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
Found at i:445166 original size:19 final size:19
Alignment explanation
Indices: 445142--445206 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
445132 TCAGTACTGA
445142 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
445161 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
445185 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
445204 TTT
1 TTT
445207 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 444642 -- 445141
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGT
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAA
GGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGA
Right flanking sequence: Indices 445207 -- 445706
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCC
AACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTA
Found at i:445220 original size:43 final size:42
Alignment explanation
Indices: 444967--445344 Score: 236
Period size: 43 Copynumber: 9.2 Consensus size: 42
444957 AAGAAGAATG
** *
444967 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTAGTAAG-GTC
* *
445010 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
* * *
445053 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTAGTAAG-GTC
* * ** **
445091 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
* ** * **
445134 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
*
445175 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
** *
445218 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTAGTAAG-GTC
* * * * *
445256 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
* *
445294 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT-GATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTAG-TAAGGTC
*
445337 AGTACTGA
1 AGTCCTGA
445345 TGACATACAA
Statistics
Matches: 262, Mismatches: 47, Indels: 52
0.73 0.13 0.14
Matches are distributed among these distances:
33 12 0.05
37 6 0.02
38 43 0.16
39 6 0.02
41 36 0.14
42 7 0.03
43 146 0.56
44 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTAGTAAGGTC
Left flanking sequence: Indices 444467 -- 444966
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 445345 -- 445844
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCAT
GGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATAAAAAAAAGGAGATG
CCATTAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGA
AAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATT
Found at i:445897 original size:16 final size:16
Alignment explanation
Indices: 445876--445906 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
445866 AGGACCCTTT
445876 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
445892 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
445907 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 445376 -- 445875
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCCATAACA
TTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTC
ATTGTATGCCATTATCCATAAAAAAAAGGAGATGCCATTAGTGCTGACCATACCAAAATTGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 445907 -- 446406
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATT
Found at i:445973 original size:43 final size:42
Alignment explanation
Indices: 445925--446022 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
445915 TGATTGAGGA
* * * *
445925 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
445968 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
446010 AAAGATCAGAACT
1 AAAG-TCAGAACT
446023 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 445425 -- 445924
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCCATAACATTCAGGAAATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATG
GAAAGGATCAATTGTCATTGTATGCCATTATCCATAAAAAAAAGGAGATGCCATTAGTGCTGACC
ATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 446023 -- 446522
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACT
CACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTATACCAACATGAG
TACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAAT
Found at i:446101 original size:28 final size:28
Alignment explanation
Indices: 446078--446197 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
446068 TGACAATTGT
446078 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
446106 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
446134 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
446162 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
446190 ATGCCATT
1 ATGCCATT
446198 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 445578 -- 446077
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCCATAACATTCAGGA
AATCGTCAAAAGTGCTTCCAACTTCATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTAT
GCCATTATCCATAAAAAAAAGGAGATGCCATTAGTGCTGACCATACCAAAATTGCAATTGTATGC
CATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 446198 -- 446697
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAAAATACTCATCA
CTTTTCATAAGCACACTTGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTG
GATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACG
Found at i:446269 original size:19 final size:19
Alignment explanation
Indices: 446241--446313 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 19
446231 CAGGTGAGTC
*
446241 GGTCAGGACTCTTTTGAAA
1 GGTCAGGACTCTCTTGAAA
* *
446260 GGTCAAGACTGTCTTGAAA
1 GGTCAGGACTCTCTTGAAA
446279 GGTCAGGACTCATTCTTCTTGAAA
1 GGTCAGGA--C--TC-TCTTGAAA
446303 GGTCAGGACTC
1 GGTCAGGACTC
446314 ATTGCAATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
19 23 0.52
20 2 0.05
21 1 0.02
22 1 0.02
23 1 0.02
24 16 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (19 bp):
GGTCAGGACTCTCTTGAAA
Left flanking sequence: Indices 445741 -- 446240
GTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGT
CAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAG
ACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACT
CATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTC
Right flanking sequence: Indices 446314 -- 446813
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTG
CTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCA
AAAAATACTCATCACTTTTCATAAGCACACTTGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACA
CTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACC
TTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCAC
GTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCA
Found at i:446300 original size:24 final size:24
Alignment explanation
Indices: 446271--446316 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
446261 GTCAAGACTG
446271 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
446295 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
446317 GCAATTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 445771 -- 446270
GCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTC
TTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATAC
CAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGACTG
Right flanking sequence: Indices 446317 -- 446816
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCAT
ATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTC
CCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAA
AATACTCATCACTTTTCATAAGCACACTTGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTC
GCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTG
ACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTC
ACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATT
Found at i:446404 original size:20 final size:20
Alignment explanation
Indices: 446379--446460 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
446369 TGACAACAAA
446379 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
446399 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
446427 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
446447 ATGCCATTAGTACT
1 ATGCCATTAGTACT
446461 CACTATACCA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 445879 -- 446378
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCTTTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 446461 -- 446960
CACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGT
ATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAAAATACTCATCACTT
TTCATAAGCACACTTGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTGGAT
TCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGC
TCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAG
CCCTCTTGTTAATTGCACAAAGCACTCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGT
CAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAG
TGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGAC
Found at i:446951 original size:22 final size:22
Alignment explanation
Indices: 446921--446985 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
446911 ATCAGTGACC
*
446921 TTATGGAAAGGTCAGGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
* *
446943 TTCTTGAAAGGTGAGGA--C-T
1 TTATTGAAAGGTCAGGACTCAT
* *
446962 TGATTGAAAGGTCAAGACTCAT
1 TTATTGAAAGGTCAGGACTCAT
446984 TT
1 TT
446986 GTATGTCATC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 1 0.03
22 16 0.50
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
TTATTGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 446421 -- 446920
AAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTATACCAACATGAGTACTCACC
ATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTG
TATGCCATTAGTGCTGACCATCAAAAAATACTCATCACTTTTCATAAGCACACTTGCTTCGCTTT
GGCTTCCCTTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCA
AAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGC
AACTTCAAATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCAC
TCAATTTCAGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGA
TATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACC
Right flanking sequence: Indices 446986 -- 447485
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAATACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGA
CCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTA
Found at i:447059 original size:43 final size:42
Alignment explanation
Indices: 446994--447167 Score: 146
Period size: 43 Copynumber: 4.2 Consensus size: 42
446984 TTGTATGTCA
* * * *
446994 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
447037 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
447079 ATCAGGACTGA--TT-CTC----TGGTCAATACTGTCTTTCACAG
1 -TCAGGACTGACCTTAC-CAAAAAGATCAAGACTGTC-TTCAAAG
*
447117 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
447160 TCAGGACT
1 TCAGGACT
447168 TTTGATGGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
37 20 0.20
38 5 0.05
39 3 0.03
40 2 0.02
41 3 0.03
42 10 0.10
43 59 0.58
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 446494 -- 446993
ACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCAT
TAGTGCTGACCATCAAAAAATACTCATCACTTTTCATAAGCACACTTGCTTCGCTTTGGCTTCCC
TTGAGTCAAAGCACACTCGCTTCGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAG
TCATGTACGCTGACCTTGACTTTGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAA
ATTGCTGAAAGTCACGTCACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATTTC
AGACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTG
AAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 447168 -- 447667
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCA
Found at i:447154 original size:80 final size:80
Alignment explanation
Indices: 447016--447167 Score: 259
Period size: 80 Copynumber: 1.9 Consensus size: 80
447006 TTATCAAAAA
447016 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
447081 CAGGACTGATTCTCT
66 CAGGACTGATTCTCT
* * * * *
447096 GGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
447161 CAGGACT
66 CAGGACT
447168 TTTGATGGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (80 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTCT
Left flanking sequence: Indices 446516 -- 447015
TGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATCAAAAAATA
CTCATCACTTTTCATAAGCACACTTGCTTCGCTTTGGCTTCCCTTGAGTCAAAGCACACTCGCTT
CGCTTTGGATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTT
TGAAAATGGCTCGTTCGTTCGAGAAAAGCACTCGCAACTTCAAATTGCTGAAAGTCACGTCACGT
CAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATTTCAGACAAAATGAGATTCACTCTT
TTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGA
CCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 447168 -- 447667
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCA
Found at i:447293 original size:16 final size:16
Alignment explanation
Indices: 447272--447302 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
447262 TCATTCTTCT
447272 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
447288 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
447303 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 446772 -- 447271
ACGTCAGAACAAAGCCCTCTTGTTAATTGCACAAAGCACTCAATTTCAGACAAAATGAGATTCAC
TCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGT
CTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTG
GTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 447303 -- 447802
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATG
TCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGG
ATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTC
Found at i:447369 original size:43 final size:42
Alignment explanation
Indices: 447321--447418 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
447311 TGATTGAGGA
* * *
447321 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
447364 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
447406 AAAGATCAGAACT
1 AAAG-TCAGAACT
447419 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 446821 -- 447320
ACAAAATGAGATTCACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGGTCAGC
ACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAA
AGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 447419 -- 447918
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCAC
TGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCT
CCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATCAA
TTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATA
ATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACCT
Found at i:447497 original size:28 final size:28
Alignment explanation
Indices: 447474--447655 Score: 348
Period size: 28 Copynumber: 6.5 Consensus size: 28
447464 TGACAATTGT
447474 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
447502 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
447530 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
447558 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
447586 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
447614 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAACAA
447642 ATGCCATTAGTACT
1 ATGCCATTAGTACT
447656 TTCCATATGC
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 151 0.99
29 2 0.01
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 446974 -- 447473
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAATA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 447656 -- 448155
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCT
TTCCATCATTTCCTTTCCATCAATTGGTCAGGGTCAACACTAATGGCATTGGTTGATGGATAATG
GCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAA
CCTTGATGTCCTGAAACAACCAAAAGCTTTTCATAAGCACATCCTTCAAATGTGTGCTGACCTTT
ACCTTTCAATTGCACAAAGCACGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAG
GTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTTTGTGGGCTTTGCTCGTCAAAATGACGTGACGTG
ACGTTGGTCAAAAGGATGAGGAACGAATAGAGAAATTGGCGGAAG
Found at i:448999 original size:15 final size:15
Alignment explanation
Indices: 448979--449018 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 15
448969 AGATTATATT
448979 AGAAGATTCTCAGAA
1 AGAAGATTCTCAGAA
448994 AGAAGATCTTTCTCAGAA
1 AGAAGA---TTCTCAGAA
449012 AGAAGAT
1 AGAAGAT
449019 CTAATATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.32
18 15 0.68
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (15 bp):
AGAAGATTCTCAGAA
Left flanking sequence: Indices 448479 -- 448978
CCAAAATGAAGAACGGGCAGGCAGTCCCAAAGATCTCATCGAAAACTTGCAGCAGCTTGCCGAAC
AAGGGCAAGGGCTCAGAGAAAAAAAGAGCAAAGGCGGCAGCCATCACTTCTACGATTGGATTGAT
AAAAGCATCAGCCTCGGGCTGTCAGGCGAAGAAAAAACGACTCGAATTCAGGGAAGAATTCAGAC
AGATACAGATGAAACGACAGATATGAGGCCCATTTCGTTCTTTGAGATAAGGCCCTTGTCAAATT
CTTGAGATCTAAGGACACTCTCAAGTCAAGGTCAGAAAGATGAATATATAATCTTATATAGAATT
AAATTAATTATATTAGAAGATTATACGAAAGAAGATCTTTCTCAGAAAGAAGATCTAATATCTTT
CGTCATATATAATCTTCTCATTTCGATTAGTCATCTTCTCATTTCGATGAGAATCTGAGATATTC
TCAAGTCTATTCTTCTTTCTGAGATTCTTCATCTTAGATTATATT
Right flanking sequence: Indices 449019 -- 449518
CTAATATCTTTCGTAATATATAATCTTCTCATTTCGATGAGAATCTGAGATATTCTCAAGTCTAT
TCTTCTTTCTGAGATTCTTCATCTTAAGAAAGTCAAGATTAATTAACTAAGATTACGTAATGATC
AATGAATTCCATTTTCTTTTTATACATCTACACGTGTCGAATCCTAGCAACAACCTCTTCCACGA
AGGGCAGGACGAAAAACCACGTGTCTTTCTTAGTTTCGAATAGAAAGAGAAATGGGGCGTGGCCA
AGTGGTAAGGCAACGGGTTTTGGTCCTGTTACTCGGAGGTTCGAATCCTTCCGTCCCAGATCAAT
TCCATCAAGAGTACAAAAGAAATGAGTCCGGAAACAAGCGGCACACCTATCTCAGAGGCTTGATA
GTCTCTTTTATTCTGGTCAAGTACAGGACATTTCAAATGAGACGTACGATGTATAGGTCAGAGGT
TGGTTACTTGATGGATCGGAACGTTTGATCACATTCCAATGAGCA
Found at i:449008 original size:18 final size:18
Alignment explanation
Indices: 448985--449020 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
448975 TATTAGAAGA
448985 TTCTCAGAAAGAAGATCT
1 TTCTCAGAAAGAAGATCT
449003 TTCTCAGAAAGAAGATCT
1 TTCTCAGAAAGAAGATCT
449021 AATATCTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (18 bp):
TTCTCAGAAAGAAGATCT
Left flanking sequence: Indices 448485 -- 448984
TGAAGAACGGGCAGGCAGTCCCAAAGATCTCATCGAAAACTTGCAGCAGCTTGCCGAACAAGGGC
AAGGGCTCAGAGAAAAAAAGAGCAAAGGCGGCAGCCATCACTTCTACGATTGGATTGATAAAAGC
ATCAGCCTCGGGCTGTCAGGCGAAGAAAAAACGACTCGAATTCAGGGAAGAATTCAGACAGATAC
AGATGAAACGACAGATATGAGGCCCATTTCGTTCTTTGAGATAAGGCCCTTGTCAAATTCTTGAG
ATCTAAGGACACTCTCAAGTCAAGGTCAGAAAGATGAATATATAATCTTATATAGAATTAAATTA
ATTATATTAGAAGATTATACGAAAGAAGATCTTTCTCAGAAAGAAGATCTAATATCTTTCGTCAT
ATATAATCTTCTCATTTCGATTAGTCATCTTCTCATTTCGATGAGAATCTGAGATATTCTCAAGT
CTATTCTTCTTTCTGAGATTCTTCATCTTAGATTATATTAGAAGA
Right flanking sequence: Indices 449021 -- 449520
AATATCTTTCGTAATATATAATCTTCTCATTTCGATGAGAATCTGAGATATTCTCAAGTCTATTC
TTCTTTCTGAGATTCTTCATCTTAAGAAAGTCAAGATTAATTAACTAAGATTACGTAATGATCAA
TGAATTCCATTTTCTTTTTATACATCTACACGTGTCGAATCCTAGCAACAACCTCTTCCACGAAG
GGCAGGACGAAAAACCACGTGTCTTTCTTAGTTTCGAATAGAAAGAGAAATGGGGCGTGGCCAAG
TGGTAAGGCAACGGGTTTTGGTCCTGTTACTCGGAGGTTCGAATCCTTCCGTCCCAGATCAATTC
CATCAAGAGTACAAAAGAAATGAGTCCGGAAACAAGCGGCACACCTATCTCAGAGGCTTGATAGT
CTCTTTTATTCTGGTCAAGTACAGGACATTTCAAATGAGACGTACGATGTATAGGTCAGAGGTTG
GTTACTTGATGGATCGGAACGTTTGATCACATTCCAATGAGCACT
Found at i:450617 original size:19 final size:19
Alignment explanation
Indices: 450595--450665 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
450585 GATTCTTCTG
450595 GTCAAGACTGTATTTCAAA
1 GTCAAGACTGTATTTCAAA
*
450614 GTCAGGACTG-ACCTTATCAAAAA
1 GTCAAGACTGTA--TT-TC--AAA
*
450637 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTATTTCAAA
*
450657 GTCAGGACT
1 GTCAAGACT
450666 AACCTTACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
18 1 0.02
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTATTTCAAA
Left flanking sequence: Indices 450095 -- 450594
GCATTACCATTCTGGACGAAATAGGCAAAGGACCCCGTCCCATTCCAGTAGTTATGGTAACCTTT
GTCTTTCTCTTTTTAGAAGACAAATGAGGTGCGCCCCCTTTTAGGCGATGGGGCCTTTTCCGCAC
ACCGAAATGGCCAAAGCCTAGTGGAGTATACCGTAGCCCCGGCCACACCATCCGCGGAAGTTTAA
GAAGAAACGAAGCCAACGTCATGAGCTTTGCCCTAATTGAAAAGCGAGTGCTTTGTGCAAAAAGC
GCACTCGCTTCGCTTTGGCTGATTATTGGTATGGTCAGCACTAATGGCATACAATGACAATTTTG
GTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTT
CTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTT
TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 450666 -- 451165
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTT
TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
Found at i:450646 original size:24 final size:24
Alignment explanation
Indices: 450614--450690 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
450604 GTATTTCAAA
*
450614 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
450638 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
450657 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
450681 GTCAAGACTG
1 GTCAAGACTG
450691 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 450114 -- 450613
AATAGGCAAAGGACCCCGTCCCATTCCAGTAGTTATGGTAACCTTTGTCTTTCTCTTTTTAGAAG
ACAAATGAGGTGCGCCCCCTTTTAGGCGATGGGGCCTTTTCCGCACACCGAAATGGCCAAAGCCT
AGTGGAGTATACCGTAGCCCCGGCCACACCATCCGCGGAAGTTTAAGAAGAAACGAAGCCAACGT
CATGAGCTTTGCCCTAATTGAAAAGCGAGTGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGC
TGATTATTGGTATGGTCAGCACTAATGGCATACAATGACAATTTTGGTATGGTCAGCACTTGTCA
GGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTG
ATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA
Right flanking sequence: Indices 450691 -- 451190
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATT
TCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTC
Found at i:450655 original size:43 final size:42
Alignment explanation
Indices: 450594--451290 Score: 249
Period size: 43 Copynumber: 16.7 Consensus size: 42
450584 TGATTCTTCT
*
450594 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGT-CTTCAAAGTCAGGACTGACCTTATCAAAAA
* *
450637 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGTC-TTCAAAGTCAGGACTGACCTTATCAAAAA
* * *
450680 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTC----T
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGACCTT-ATCAAAAA
* * * **
450718 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-TTTTTCTTGAAA
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGACCTTATC-AAAAA
* * * ***
450761 GGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTTTTTGAAA
1 GGTCAAGACTGTCTTCAAAGTCAGGACTGACCTTATCAAAAA
* * * * *
450802 GATCAAGACTATCTTGAAAGATCAGGACTGA--TTCTTC----T
1 GGTCAAGACTGTCTTCAAAG-TCAGGACTGACCTT-ATCAAAAA
* * *
450840 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGT-CTTCAAAGTCAGGACTGACCTTATCAAAAA
* * * **
450883 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAA
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGA-CCTTATCAAAAA
* * *
450926 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTATGGAAGGACA
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGACCTTAT-CAA--AAA
* * * * * * * * * * *
450970 GGACCAATTGCAATTGTATGC-CA-TTAGTACTCACCTGACCATACAA
1 GG-TCAA--G--ACTGTCTTCAAAGTCAGGACTGACCTTATCA-AAAA
* ** * * *
451016 GACTC-A-TTTGTATGTC--A-TCAGTACTCACCTTATCAAAAA
1 G-GTCAAGACTGTCT-TCAAAGTCAGGACTGACCTTATCAAAAA
* *
451055 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGTC-TTCAAAGTCAGGACTGACCTTATCAAAAA
* * * * *
451098 GATCAAGACTATC-T--GA-TCAGGACTGA--TTCTTC----T
1 GGTCAAGACTGTCTTCAAAGTCAGGACTGACCTT-ATCAAAAA
* * *
451131 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGT-CTTCAAAGTCAGGACTGACCTTATCAAAAA
* * * *
451174 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGT-CTTCAAAGTCAGGACTGACCTTATCAAAAA
* * * **
451217 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-GGAAA
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGA-CCTTATCAAAAA
*
451260 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTCAAA-GTCAGGACTGA
451291 TTATGGAAGG
Statistics
Matches: 506, Mismatches: 92, Indels: 112
0.71 0.13 0.16
Matches are distributed among these distances:
33 9 0.02
35 1 0.00
36 2 0.00
37 2 0.00
38 75 0.15
39 16 0.03
40 34 0.07
41 38 0.08
42 21 0.04
43 273 0.54
44 10 0.02
45 4 0.01
46 10 0.02
47 2 0.00
48 4 0.01
49 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (42 bp):
GGTCAAGACTGTCTTCAAAGTCAGGACTGACCTTATCAAAAA
Left flanking sequence: Indices 450094 -- 450593
AGCATTACCATTCTGGACGAAATAGGCAAAGGACCCCGTCCCATTCCAGTAGTTATGGTAACCTT
TGTCTTTCTCTTTTTAGAAGACAAATGAGGTGCGCCCCCTTTTAGGCGATGGGGCCTTTTCCGCA
CACCGAAATGGCCAAAGCCTAGTGGAGTATACCGTAGCCCCGGCCACACCATCCGCGGAAGTTTA
AGAAGAAACGAAGCCAACGTCATGAGCTTTGCCCTAATTGAAAAGCGAGTGCTTTGTGCAAAAAG
CGCACTCGCTTCGCTTTGGCTGATTATTGGTATGGTCAGCACTAATGGCATACAATGACAATTTT
GGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATT
TCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTT
TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 451291 -- 451790
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:450662 original size:81 final size:79
Alignment explanation
Indices: 450553--450956 Score: 311
Period size: 81 Copynumber: 4.9 Consensus size: 79
450543 ACCTTTTTTG
* * *
450553 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCA
1 AAAGGTCAAGACTGTCTTGAAAG-TCAGGACTGATTCTTCTGGTCAAGACTGT-CTTCAAAGTCA
450618 GGACTGACCTTATCAA
64 GGACTGACCTTATCAA
* ** * *
450634 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTCAA
*
450698 AGGTCAGGACTGA--TTCTTC--
59 A-GTCAGGACTGACCTT-ATCAA
* * *
450717 --TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTC-T----GGTCAAGACTGTCTTCAAA
* * ***
450780 -TCAGTACTGACCTTTTTTG
60 GTCAGGACTGACCTTATCAA
* * * *
450799 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCA
1 AAAGGTCAAGACTGTCTTGAAAG-TCAGGACTGATTCTTCTGGTCAAGACTGT-CTTCAAAGTCA
*
450864 GGACTGACCTTACCAA
64 GGACTGACCTTATCAA
*
450880 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTC-T----GGTCAAGACTGTCTTCAAA
450945 GGTCAGGACTGA
60 -GTCAGGACTGA
450957 TTATGGAAGG
Statistics
Matches: 256, Mismatches: 36, Indels: 57
0.73 0.10 0.16
Matches are distributed among these distances:
79 21 0.08
80 16 0.06
81 114 0.45
82 12 0.05
83 2 0.01
84 34 0.13
85 11 0.04
86 46 0.18
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (79 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTCAAAGTCAGG
ACTGACCTTATCAA
Left flanking sequence: Indices 450053 -- 450552
AGCTATACTAATGGTCGGAGAAATTCTTCGATTTTTCAGAAAGCATTACCATTCTGGACGAAATA
GGCAAAGGACCCCGTCCCATTCCAGTAGTTATGGTAACCTTTGTCTTTCTCTTTTTAGAAGACAA
ATGAGGTGCGCCCCCTTTTAGGCGATGGGGCCTTTTCCGCACACCGAAATGGCCAAAGCCTAGTG
GAGTATACCGTAGCCCCGGCCACACCATCCGCGGAAGTTTAAGAAGAAACGAAGCCAACGTCATG
AGCTTTGCCCTAATTGAAAAGCGAGTGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGCTGAT
TATTGGTATGGTCAGCACTAATGGCATACAATGACAATTTTGGTATGGTCAGCACTTGTCAGGAT
TTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
Right flanking sequence: Indices 450957 -- 451456
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAG
TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
Found at i:450701 original size:19 final size:19
Alignment explanation
Indices: 450677--450955 Score: 120
Period size: 19 Copynumber: 13.7 Consensus size: 19
450667 ACCTTACCAA
450677 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
450696 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
450716 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
450734 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
450758 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
450777 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
450799 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
450818 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
450838 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
450856 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
450880 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
450899 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
450923 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
450942 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
450956 ATTATGGAAG
Statistics
Matches: 198, Mismatches: 32, Indels: 60
0.68 0.11 0.21
Matches are distributed among these distances:
17 10 0.05
19 110 0.56
20 4 0.02
21 10 0.05
22 10 0.05
23 3 0.02
24 51 0.26
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 450177 -- 450676
AGACAAATGAGGTGCGCCCCCTTTTAGGCGATGGGGCCTTTTCCGCACACCGAAATGGCCAAAGC
CTAGTGGAGTATACCGTAGCCCCGGCCACACCATCCGCGGAAGTTTAAGAAGAAACGAAGCCAAC
GTCATGAGCTTTGCCCTAATTGAAAAGCGAGTGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTG
GCTGATTATTGGTATGGTCAGCACTAATGGCATACAATGACAATTTTGGTATGGTCAGCACTTGT
CAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACT
TGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 450956 -- 451455
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
Found at i:451160 original size:19 final size:19
Alignment explanation
Indices: 451138--451202 Score: 51
Period size: 19 Copynumber: 3.2 Consensus size: 19
451128 TCTGGTCAAT
451138 ACTGTATTTCACAGTCAGG
1 ACTGTATTTCACAGTCAGG
* *
451157 ACTG-ACCTTATCAAAAAGGTCAAG
1 ACTGTA--TT-TC--ACA-GTCAGG
451181 ACTGTATTTCACAGTCAGG
1 ACTGTATTTCACAGTCAGG
451200 ACT
1 ACT
451203 AACCTTACCA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
18 1 0.03
19 12 0.34
20 4 0.11
21 2 0.06
22 2 0.06
23 4 0.11
24 9 0.26
25 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (19 bp):
ACTGTATTTCACAGTCAGG
Left flanking sequence: Indices 450638 -- 451137
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAT
Right flanking sequence: Indices 451203 -- 451702
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Found at i:451210 original size:334 final size:334
Alignment explanation
Indices: 450840--451536 Score: 1297
Period size: 334 Copynumber: 2.1 Consensus size: 334
450830 TGATTCTTCT
*
450840 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAGGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
*
450905 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
66 CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
450970 GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
131 GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
451035 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
196 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
*
451100 TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCT
261 TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCT
*
451165 TATCAAAAA
326 TACCAAAAA
451174 GGTCAAGACTGTATTTCACA-GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCA-AGGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
451238 TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
65 TCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
451303 AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCAT
130 AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCAT
*
451368 CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
195 CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
451433 ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACC
260 ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACC
451498 TTACCAAAAA
325 TTACCAAAAA
* * **
451508 GATCAAGACTGTCTTGAAAGGTCAGGACT
1 GGTCAAGACTGTATTTCAAGGTCAGGACT
451537 TTTGATGGAA
Statistics
Matches: 352, Mismatches: 9, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
333 1 0.00
334 350 0.99
335 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (334 bp):
GGTCAAGACTGTATTTCAAGGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCT
TACCAAAAA
Left flanking sequence: Indices 450340 -- 450839
CTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGCTGATTATTGGTATGGTCAGCACTAATGGCAT
ACAATGACAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCC
GGTCAGGACTCATTTCTTGAAAGGTGAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTT
TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 451537 -- 452036
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
Found at i:451238 original size:19 final size:19
Alignment explanation
Indices: 451214--451289 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
451204 ACCTTACCAA
451214 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
451233 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
451257 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
451276 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
451290 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 450714 -- 451213
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 451290 -- 451789
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:451751 original size:43 final size:43
Alignment explanation
Indices: 451703--451875 Score: 208
Period size: 43 Copynumber: 4.0 Consensus size: 43
451693 ATTAGTACTC
*
451703 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGT-CTTCAAAGGTCAGGACTG
*
451746 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTG
* * *
451789 ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
* * ** *
451832 ATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
451875 A
1 A
451876 TTCTTCTGGA
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 5 0.04
43 108 0.94
44 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
Left flanking sequence: Indices 451203 -- 451702
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 451876 -- 452375
TTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACT
GTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:451768 original size:24 final size:24
Alignment explanation
Indices: 451703--451812 Score: 80
Period size: 19 Copynumber: 5.0 Consensus size: 24
451693 ATTAGTACTC
451703 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
*
451727 TA--TT-TC--AAA-GTCAGGACTG
1 -ACCTTATCAAAAAGGTCAAGACTG
451746 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
451770 -TCTT-TC--AAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTG
* *
451789 ACCTGACCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
451813 TCTTGAAAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 23
0.66 0.10 0.24
Matches are distributed among these distances:
18 1 0.02
19 17 0.27
20 10 0.16
21 3 0.05
22 4 0.06
23 11 0.17
24 17 0.27
25 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 451203 -- 451702
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 451813 -- 452312
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGT
ATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCT
Found at i:451844 original size:24 final size:24
Alignment explanation
Indices: 451799--451897 Score: 110
Period size: 19 Copynumber: 4.5 Consensus size: 24
451789 ACCTGACCAA
451799 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
451818 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
451842 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
451861 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
451885 AAAGGTCAAGACT
1 AAAGGTCAAGACT
451898 ATGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 2 0.03
24 27 0.41
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (24 bp):
AAAGGTCAAGACTGATTCTTCTGG
Left flanking sequence: Indices 451299 -- 451798
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 451898 -- 452397
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGAC
TGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGAC
CTTATCAAAAAGGTCAATACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAATACTG
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAA
Found at i:451876 original size:43 final size:43
Alignment explanation
Indices: 451799--451913 Score: 200
Period size: 43 Copynumber: 2.7 Consensus size: 43
451789 ACCTGACCAA
451799 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
451842 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
*
451885 AAAGGTCAAGAC--T-ATGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
451914 AATGAGAATG
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 15 0.21
41 1 0.01
43 55 0.77
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 451299 -- 451798
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 451914 -- 452413
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAA
GACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCA
ATACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
Found at i:451905 original size:16 final size:16
Alignment explanation
Indices: 451884--451914 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
451874 GATTCTTCTG
451884 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
451900 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
451915 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 451384 -- 451883
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 451915 -- 452414
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
ATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGA
CTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAA
TACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTT
Found at i:452023 original size:43 final size:42
Alignment explanation
Indices: 451960--452136 Score: 150
Period size: 43 Copynumber: 4.2 Consensus size: 42
451950 TTGTATGTCA
* * * *
451960 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
452003 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * * *
452045 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
452084 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
452127 TCAGGACTGA
1 TCAGGACTGA
452137 TTCTTCTTGA
Statistics
Matches: 103, Mismatches: 21, Indels: 20
0.72 0.15 0.14
Matches are distributed among these distances:
37 3 0.03
38 19 0.18
39 6 0.06
42 11 0.11
43 61 0.59
44 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 451460 -- 451959
CTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTC
AAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 452137 -- 452636
TTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTG
TATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
Found at i:452121 original size:81 final size:81
Alignment explanation
Indices: 451982--452143 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 81
451972 TTATCAAAAA
*
451982 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
452047 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * *
452063 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
452128 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
452144 TGAAAGGTGA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 451482 -- 451981
AAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 452144 -- 452643
TGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTT
GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCA
AAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCA
AGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
Found at i:452134 original size:19 final size:19
Alignment explanation
Indices: 452103--452177 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
452093 ACCTTACCAA
*
452103 AAAGATCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
452122 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* *
452146 AAAGGTGAAGACTGTTTTG
1 AAAGGTCAAGACTGTCTTG
452165 AAAGGTCAAGACT
1 AAAGGTCAAGACT
452178 CATTTGTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 28 0.62
24 17 0.38
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 451603 -- 452102
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTC
AAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 452178 -- 452677
CATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
ATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
Found at i:452183 original size:19 final size:19
Alignment explanation
Indices: 452143--452183 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
452133 CTGATTCTTC
* **
452143 TTGAAAGGTGAAGACTGTT
1 TTGAAAGGTCAAGACTCAT
452162 TTGAAAGGTCAAGACTCAT
1 TTGAAAGGTCAAGACTCAT
452181 TTG
1 TTG
452184 TATGTCATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAGGTCAAGACTCAT
Left flanking sequence: Indices 451643 -- 452142
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Right flanking sequence: Indices 452184 -- 452683
TATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT
CTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGT
Found at i:452255 original size:43 final size:43
Alignment explanation
Indices: 452207--452615 Score: 317
Period size: 43 Copynumber: 9.9 Consensus size: 43
452197 CTCACCTTTT
* * *
452207 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* * * * *
452250 TTGAAAGGTCAATACTGTATTTCAAA-GTCAGGACTGA-CCTTA
1 TTGAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTTC
** * * **
452292 TCAAAAAGGTCAATACTGTCTTTCAAA-GTCAGGACT-AACCTTAC
1 T-TGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-C
*** *
452336 CAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
*
452379 -T----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
*
452417 TTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTC
* * *
452458 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
* ** *
452501 -T----GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTAC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C
***
452539 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
452582 -T----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
452616 ATGGAAGGAC
Statistics
Matches: 305, Mismatches: 36, Indels: 55
0.77 0.09 0.14
Matches are distributed among these distances:
37 3 0.01
38 94 0.31
39 1 0.00
41 34 0.11
42 15 0.05
43 146 0.48
44 12 0.04
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (43 bp):
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 451707 -- 452206
TATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGA
AAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTT
Right flanking sequence: Indices 452616 -- 453115
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:452309 original size:24 final size:24
Alignment explanation
Indices: 452282--452352 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
452272 CAAAGTCAGG
452282 ACTGACCTTATCAAAAAGGTCAAT
1 ACTGACCTTATCAAAAAGGTCAAT
* **
452306 ACTG-TCTT-TC--AAA-GTCAGG
1 ACTGACCTTATCAAAAAGGTCAAT
* *
452325 ACTAACCTTACCAAAAAGGTCAAT
1 ACTGACCTTATCAAAAAGGTCAAT
452349 ACTG
1 ACTG
452353 TCTTGAAAGG
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 7 0.21
20 6 0.18
21 1 0.03
22 2 0.06
23 6 0.18
24 11 0.33
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (24 bp):
ACTGACCTTATCAAAAAGGTCAAT
Left flanking sequence: Indices 451782 -- 452281
AGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCA
GGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGG
Right flanking sequence: Indices 452353 -- 452852
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
Found at i:452361 original size:193 final size:188
Alignment explanation
Indices: 452022--452370 Score: 495
Period size: 193 Copynumber: 1.8 Consensus size: 188
452012 ACCTTACCAA
*
452022 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCA
1 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCA
* ** ***
452087 GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
66 GGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAGGTCAGGACTGAACCTTCCAAAAAGGT
* *
452152 GAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
131 CAAGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
452210 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAA
1 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T----GGTCAATACTGTATTTCAA
* * *
452275 AGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAA-GTCAGGACT-AACCTTACCA
61 AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAGGTCAGGACTGAACCTT-CCA
* *
452338 AAAAGGTCAATACTGTCTTGAAAGGTCAGGACT
124 AAAAGGTCAAGACTGTCTTGAAAGGTCAAGACT
452371 GATTCTTCTG
Statistics
Matches: 140, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
188 40 0.29
189 1 0.01
192 4 0.03
193 90 0.64
194 5 0.04
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (188 bp):
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAGGTCAGGACTGAACCTTCCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
Left flanking sequence: Indices 451522 -- 452021
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 452371 -- 452870
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
Found at i:452363 original size:19 final size:19
Alignment explanation
Indices: 452339--452612 Score: 96
Period size: 19 Copynumber: 13.7 Consensus size: 19
452329 ACCTTACCAA
*
452339 AAAGGTCAATACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
452358 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
452378 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
452396 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
452420 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
452439 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
452461 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
452480 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
452500 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
452518 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
452542 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
452561 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
452581 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
452599 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
452613 ATTATGGAAG
Statistics
Matches: 189, Mismatches: 37, Indels: 58
0.67 0.13 0.20
Matches are distributed among these distances:
17 14 0.07
19 111 0.59
20 4 0.02
21 14 0.07
22 10 0.05
23 3 0.02
24 33 0.17
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 451839 -- 452338
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAATACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 452613 -- 453112
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
Found at i:452393 original size:38 final size:38
Alignment explanation
Indices: 452342--452615 Score: 268
Period size: 38 Copynumber: 6.9 Consensus size: 38
452332 TTACCAAAAA
*
452342 GGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
*
452380 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
* *
452419 GAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TTTT
1 ----GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCT
* *
452460 GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
1 G---G-TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
* ** * *
452502 GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--C----T
452545 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
452583 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
452616 ATGGAAGGAC
Statistics
Matches: 196, Mismatches: 19, Indels: 42
0.76 0.07 0.16
Matches are distributed among these distances:
37 4 0.02
38 92 0.47
39 3 0.02
40 1 0.01
41 28 0.14
42 7 0.04
43 58 0.30
44 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 451842 -- 452341
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
CTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAA
AAGGTCAATACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 452616 -- 453115
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Done.