Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 13 of 20
Found at i:384781 original size:76 final size:78
Alignment explanation
Indices: 384613--384805 Score: 246
Period size: 76 Copynumber: 2.4 Consensus size: 78
384603 CCTTCCATAA
**
384613 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACA
1 TCAGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACA
384678 GTCTTGACCTTTTTGGTAAGG
58 GTCTTGACCTTTTTGGTAAGG
* *
384699 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
384762 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
* *
384775 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACC
384806 TTTTTGATAA
Statistics
Matches: 101, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
76 53 0.52
77 2 0.02
81 19 0.19
86 27 0.27
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 384113 -- 384612
ATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTG
CAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 384806 -- 385305
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
Found at i:384950 original size:255 final size:253
Alignment explanation
Indices: 384645--385641 Score: 875
Period size: 255 Copynumber: 3.8 Consensus size: 253
384635 GTCTTGACCT
384645 TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
1 TTCCAGAAGAA-CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
384710 CTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
65 CTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
*
384775 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGAT-TTCAAGACAG
130 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATATACAAGACAG
* * * * * *
384839 TCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT-ACAATTGCAATTGGTCCTGTCC
195 TCTTGACCTTTCCA--TTTAGTCA-ATAAGTACTAATGGCCTGAC-CTTTCAA-T-GTCCTGTCC
**
384903 TTCCATCA-AA-AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-C
1 TTCCAGAAGAACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
*
384965 TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
66 T-TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
*
385030 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA-A
130 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGAT---ATACAAGA
* * ** * * * * * *
385094 TGAGTCTTGA--TGGT-CA-TTCCTCAATCA-TTCTCATTAGTCCTGACCTTTC-ATAGTCTTGA
192 -CAGTCTTGACCT-TTCCATTTAGTCAATAAGTACT-AAT-GGCCTGACCTTTCAAT-GTCCTGT
385153 CC
252 CC
*** *
385155 TTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATCAGTCCTG
1 -TTCCAGAAGAA-CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTG
** * * * * * * *
385219 ACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG-GTTAGTCCTGACTTTGAAAGACAGTCTTGAC
63 ACCTTGAAAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--CAGATAGTCTTGAT
* * * * *
385283 CTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
117 CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
* * * * ** * * *
385348 ATGGCATACAATTG-CAATTGGTCCTGTCC-TTCCATAATCAGTC-CTGACCTTTCAAGAAGAAT
182 AT---ATACAA--GAC-A---GTCTTGACCTTTCCAT--TTAGTCAAT-A-AGTACTA-ATG---
** * * *
385410 GAGTCCTGACCTTTCAA-G-ACAGT-C
230 GCCT-G--ACCTTTCAATGTCCTGTCC
385434 TTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
1 TT--CCAGAAGAA-CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
*
385499 ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
63 ACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
*
385564 GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGAT-TTCAAGAC
128 GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATATACAAGAC
385628 AGTCTTGACCTTTC
193 AGTCTTGACCTTTC
385642 AAGAAAAATC
Statistics
Matches: 598, Mismatches: 84, Indels: 110
0.76 0.11 0.14
Matches are distributed among these distances:
252 11 0.02
253 11 0.02
254 15 0.03
255 171 0.29
256 58 0.10
257 7 0.01
258 8 0.01
259 12 0.02
261 17 0.03
262 5 0.01
264 3 0.01
265 1 0.00
266 86 0.14
268 1 0.00
270 73 0.12
271 6 0.01
272 3 0.01
274 3 0.01
275 13 0.02
276 2 0.00
277 3 0.01
278 2 0.00
279 2 0.00
280 73 0.12
281 4 0.01
282 7 0.01
283 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (253 bp):
TTCCAGAAGAACAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATATACAAGACAGT
CTTGACCTTTCCATTTAGTCAATAAGTACTAATGGCCTGACCTTTCAATGTCCTGTCC
Left flanking sequence: Indices 384145 -- 384644
ATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
Right flanking sequence: Indices 385642 -- 386141
AAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAAT
GAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCA
GCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAG
TACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
Found at i:384977 original size:43 final size:42
Alignment explanation
Indices: 384930--385082 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
384920 ACCTTTCAAG
384930 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
384973 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
385008 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
385049 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
385083 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 384430 -- 384929
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 385083 -- 385582
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
Found at i:385153 original size:16 final size:16
Alignment explanation
Indices: 385128--385158 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
385118 TCATTCTCAT
385128 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
385144 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
385159 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 384628 -- 385127
CAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 385159 -- 385658
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGA
CCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
Found at i:385177 original size:24 final size:24
Alignment explanation
Indices: 385145--385225 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
385135 GACCTTTCAT
*
385145 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
385169 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
385188 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
385212 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
385226 AAGACAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 26 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 384645 -- 385144
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 385226 -- 385725
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTAC
TGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAG
Found at i:385196 original size:19 final size:23
Alignment explanation
Indices: 385145--385243 Score: 106
Period size: 19 Copynumber: 4.6 Consensus size: 23
385135 GACCTTTCAT
385145 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
385169 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
385188 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
385212 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
385231 AGTCTTGACCTTT
1 AGTCTTGACCTTT
385244 TTGGTCAGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 26 0.39
20 3 0.05
21 6 0.09
22 3 0.05
23 3 0.05
24 25 0.38
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (23 bp):
AGTCTTGACCTTTCCAAAGAATC
Left flanking sequence: Indices 384645 -- 385144
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 385244 -- 385743
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCA
Found at i:385202 original size:43 final size:43
Alignment explanation
Indices: 385129--385243 Score: 200
Period size: 43 Copynumber: 2.7 Consensus size: 43
385119 CATTCTCATT
*
385129 AGTCCTGACCTTTC---ATAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
385169 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
385212 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
385244 TTGGTCAGGT
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
40 14 0.20
43 57 0.80
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 384629 -- 385128
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 385244 -- 385743
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCA
Found at i:385259 original size:43 final size:43
Alignment explanation
Indices: 385167--385339 Score: 199
Period size: 43 Copynumber: 4.0 Consensus size: 43
385157 TCCAGAAGAA
* *** *
385167 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
385210 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
385253 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
385296 TCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
385339 T
1 T
385340 GAGTACTAAT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
42 4 0.03
43 111 0.95
44 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 384667 -- 385166
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 385340 -- 385839
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
Found at i:385301 original size:24 final size:24
Alignment explanation
Indices: 385230--385339 Score: 80
Period size: 19 Copynumber: 5.0 Consensus size: 24
385220 CCTTTCAAGA
* *
385230 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
385254 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
385273 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
*
385297 CAGTCCTGA-C--TTTGA-AA--T
1 CAGTCTTGACCTTTTTGATAAGGT
385315 ACAGTCTTGACCTTTTTGATAAGGT
1 -CAGTCTTGACCTTTTTGATAAGGT
385340 GAGTACTAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 23
0.66 0.10 0.24
Matches are distributed among these distances:
18 1 0.02
19 16 0.25
20 5 0.08
21 9 0.14
22 10 0.16
23 6 0.09
24 16 0.25
25 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 384730 -- 385229
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 385340 -- 385839
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
Found at i:385438 original size:19 final size:19
Alignment explanation
Indices: 385411--385480 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
385401 AAGAAGAATG
385411 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
385430 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
385449 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
385468 AGTCTTGACCTTT
1 AGTCCTGACCTTT
385481 TTGGTAAGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 32 0.80
20 1 0.03
21 3 0.08
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 384911 -- 385410
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 385481 -- 385980
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAA
AGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTC
CATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATA
Found at i:385439 original size:43 final size:42
Alignment explanation
Indices: 385386--385683 Score: 202
Period size: 43 Copynumber: 7.3 Consensus size: 42
385376 CTTCCATAAT
* *
385386 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTC-AGAAGAATCAGTCCTGACCTTTCAAGA
385429 CAGTCTTGA-C---CAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAGAAGAATCAGTCCTGACCTTTCAAGA
** * ** *
385467 CAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATA
1 CAGTCTTGACC-TTTCAG-AAGAATCAGTCCTGACCTTTCAAGA
385510 CAGTCTTGA-C---CAGAAGAATCAGTCCTGA----TC-AGA
1 CAGTCTTGACCTTTCAGAAGAATCAGTCCTGACCTTTCAAGA
* * ** * * *
385543 TAGTCTTGATCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAAGA
1 CAGTCTTGA-CCTTTCAG-AAGAATCAGTCCTGACCTTT-CAAGA
** * *
385586 CAGTCTTGACCTTTTTGATA-AGGTCAGTACTGA--TTTCAAGA
1 CAGTCTTGACCTTTCAGA-AGA-ATCAGTCCTGACCTTTCAAGA
*
385627 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTC-AGAAGAATCAGTCCTGACCTTTCAAGA
385670 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
385684 TTGGTAAGGT
Statistics
Matches: 199, Mismatches: 31, Indels: 50
0.71 0.11 0.18
Matches are distributed among these distances:
33 10 0.05
37 3 0.02
38 56 0.28
39 5 0.03
41 30 0.15
42 15 0.08
43 77 0.39
44 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (42 bp):
CAGTCTTGACCTTTCAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 384886 -- 385385
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATA
GTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 385684 -- 386183
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCT
GACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCT
TTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTA
ATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Found at i:385444 original size:38 final size:38
Alignment explanation
Indices: 385402--385537 Score: 157
Period size: 38 Copynumber: 3.4 Consensus size: 38
385392 TGACCTTTCA
*
385402 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
385440 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
* * ** *
385478 TTTTTGGTAAG-GTCAGTCCTGACCTTGAAATACAGTCTTGACC
1 -----AG-AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
385521 AGAAGAATCAGTCCTGA
1 AGAAGAATCAGTCCTGA
385538 TCAGATAGTC
Statistics
Matches: 83, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
37 3 0.04
38 48 0.58
43 29 0.35
44 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (38 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 384902 -- 385401
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
Right flanking sequence: Indices 385538 -- 386037
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGAC
CTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCT
GACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTG
GGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAA
Found at i:385589 original size:76 final size:78
Alignment explanation
Indices: 385411--385596 Score: 261
Period size: 76 Copynumber: 2.4 Consensus size: 78
385401 AAGAAGAATG
*
385411 AGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTG
385475 ACCTTTTTGGTAAGGTC
62 ACCTTTTTGGTAAGGTC
* * * *
385492 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
385555 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
385568 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACTTTGAAAGACAGTCTTGACC
385597 TTTTTGATAA
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
80 3 0.03
81 39 0.41
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 384911 -- 385410
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 385597 -- 386096
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGT
CCTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAA
AGTCCTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTG
CCATTGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAG
TACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
Found at i:385643 original size:19 final size:19
Alignment explanation
Indices: 385619--385683 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
385609 TCAGTACTGA
385619 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
385638 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
385662 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
385681 TTT
1 TTT
385684 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 385119 -- 385618
CATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
CAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAA
TACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 385684 -- 386183
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCT
GACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCT
TTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTA
ATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Found at i:385682 original size:203 final size:198
Alignment explanation
Indices: 385421--385822 Score: 716
Period size: 203 Copynumber: 2.0 Consensus size: 198
385411 AGTCCTGACC
*
385421 TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
1 TTTCAAGACAGTCTTGACCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
*
385486 AAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
66 AAGGTCAGTCCTGA-CTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
385550 GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
130 GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
385615 CTGA
195 CTGA
385619 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGA-C---C-AGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
385684 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
61 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
*
385749 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
126 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
385814 AGTACTGA
191 AGTACTGA
385822 T
1 T
385823 GACATACAAA
Statistics
Matches: 195, Mismatches: 3, Indels: 7
0.95 0.01 0.03
Matches are distributed among these distances:
198 17 0.09
199 1 0.01
202 3 0.02
203 174 0.89
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (198 bp):
TTTCAAGACAGTCTTGACCAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTAC
TGA
Left flanking sequence: Indices 384921 -- 385420
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
AATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 385823 -- 386322
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCT
GACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAA
TTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
Found at i:385697 original size:43 final size:42
Alignment explanation
Indices: 385447--385821 Score: 252
Period size: 43 Copynumber: 9.2 Consensus size: 42
385437 ACCAGAAGAA
*
385447 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
385490 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
385528 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
385566 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* * *** * **
385609 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAA
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
*
385650 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
385693 TCAGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
385731 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
385769 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
385812 TGAGTACTGA
1 TCAGTCCTGA
385822 TGACATACAA
Statistics
Matches: 250, Mismatches: 55, Indels: 54
0.70 0.15 0.15
Matches are distributed among these distances:
33 21 0.08
37 6 0.02
38 42 0.17
39 6 0.02
41 31 0.12
42 5 0.02
43 139 0.56
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 384947 -- 385446
GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTT
CATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 385822 -- 386321
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCC
TGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGA
ATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATT
TGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
Found at i:385857 original size:19 final size:19
Alignment explanation
Indices: 385835--385884 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
385825 CATACAAATG
*
385835 AGTCTTGACCTTTCAAAAC
1 AGTCCTGACCTTTCAAAAC
*
385854 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
385873 AGTCCTGACCTT
1 AGTCCTGACCTT
385885 CCTGACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 385335 -- 385834
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 385885 -- 386384
CCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCAT
GAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACA
TTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
Found at i:385908 original size:30 final size:28
Alignment explanation
Indices: 385856--385914 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
385846 TTCAAAACAG
385856 TCCTGACCTTTCAAAAGAGTCCTGACCT
1 TCCTGACCTTTCAAAAGAGTCCTGACCT
* *
385884 TCCTGACTTTTCCATAATGAGTCCTGACCT
1 TCCTGACCTTT-CA-AAAGAGTCCTGACCT
385914 T
1 T
385915 TCAAGAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 10 0.37
29 2 0.07
30 15 0.56
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.34
Consensus pattern (28 bp):
TCCTGACCTTTCAAAAGAGTCCTGACCT
Left flanking sequence: Indices 385356 -- 385855
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTAC
TGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAG
Right flanking sequence: Indices 385915 -- 386414
TCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCAT
ACAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATA
TGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
Found at i:385910 original size:21 final size:19
Alignment explanation
Indices: 385884--385940 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
385874 GTCCTGACCT
*
385884 TCCTGACTTTTCCATAATGAG
1 TCCTGACCTTTCCATAA--AG
* *
385905 TCCTGACCTTTCAAGAAAG
1 TCCTGACCTTTCCATAAAG
385924 TCCTGACCTTTCCATAA
1 TCCTGACCTTTCCATAA
385941 CCTTTCCATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 17 0.55
21 14 0.45
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (19 bp):
TCCTGACCTTTCCATAAAG
Left flanking sequence: Indices 385384 -- 385883
ATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAA
GAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCT
Right flanking sequence: Indices 385941 -- 386440
CCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTA
CTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
Found at i:386031 original size:28 final size:28
Alignment explanation
Indices: 385999--386148 Score: 194
Period size: 28 Copynumber: 5.6 Consensus size: 28
385989 ATTGGGTATG
*
385999 GTGAGTACTAATGACATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
*
386027 GTGAGTACTAATGGCATATG---G-A-A
1 GTGAGTACTAATGGCATTTGTTTGTACA
386050 ---AGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
386075 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
386103 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
386131 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
386149 GAATTGCAAT
Statistics
Matches: 110, Mismatches: 3, Indels: 18
0.84 0.02 0.14
Matches are distributed among these distances:
20 16 0.15
23 2 0.02
24 2 0.02
25 2 0.02
27 1 0.01
28 87 0.79
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 385499 -- 385998
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACA
GTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAAT
TTTGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATG
Right flanking sequence: Indices 386149 -- 386648
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
Found at i:386066 original size:48 final size:51
Alignment explanation
Indices: 386001--386147 Score: 194
Period size: 48 Copynumber: 2.8 Consensus size: 51
385991 TGGGTATGGT
*
386001 GAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATG-G-AA
1 GAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATATGTGCAA
*
386050 -AGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAA
1 GAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATATG--TG-CAA
386103 GTGAGTACTAATGGCATTTGTTTGT-CAAGTGAGTACTAATGGCAT
1 --GAGTACTAATGGCATTTGTTTGTAC-AGTGAGTACTAATGGCAT
386148 TGAATTGCAA
Statistics
Matches: 87, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
48 43 0.49
51 1 0.01
53 2 0.02
55 1 0.01
56 40 0.46
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (51 bp):
GAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATATGTGCAA
Left flanking sequence: Indices 385501 -- 386000
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCTGAC
TTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAATTT
TGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGT
Right flanking sequence: Indices 386148 -- 386647
TGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
TTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
Found at i:386184 original size:24 final size:24
Alignment explanation
Indices: 386156--386201 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
386146 ATTGAATTGC
386156 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
386180 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
386202 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 385656 -- 386155
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAA
AACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTT
CAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATA
CAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 386202 -- 386701
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
Found at i:386343 original size:43 final size:42
Alignment explanation
Indices: 386296--386448 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
386286 ACCTTTCAAG
386296 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
386339 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
386374 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
386415 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
386449 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 385796 -- 386295
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTG
ACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAAGTC
CTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAATGGCATACAATTGCCAT
TGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 386449 -- 386948
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Found at i:386483 original size:19 final size:19
Alignment explanation
Indices: 386456--386536 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 19
386446 TGATGACATA
* *
386456 CAAATGAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
386475 CAAAAGAGTCCTGACCTTT
1 CAAAAGAGTCCTGACCTTT
386494 CAAGAAGAATGAGTCCTGACCTTT
1 C---AA-AA-GAGTCCTGACCTTT
* * *
386518 CAAGACAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
386537 TTGGTAAGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 30 0.58
20 1 0.02
21 2 0.04
22 2 0.04
23 2 0.04
24 15 0.29
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (19 bp):
CAAAAGAGTCCTGACCTTT
Left flanking sequence: Indices 385956 -- 386455
TGGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTT
TGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGA
ATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 386537 -- 387036
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:386512 original size:24 final size:23
Alignment explanation
Indices: 386457--386522 Score: 86
Period size: 24 Copynumber: 3.0 Consensus size: 23
386447 GATGACATAC
*
386457 AAATGAGTCTTGACCTTTC---A
1 AAATGAGTCCTGACCTTTCAAGA
386477 AAA-GAGTCCTGACCTTTCAAGA
1 AAATGAGTCCTGACCTTTCAAGA
386499 AGAATGAGTCCTGACCTTTCAAGA
1 A-AATGAGTCCTGACCTTTCAAGA
386523 CAGTCTTGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 14 0.35
20 3 0.08
22 2 0.05
23 2 0.05
24 19 0.47
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (23 bp):
AAATGAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 385957 -- 386456
GGTATGGTCAGCACTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTTT
GTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAA
TTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
Right flanking sequence: Indices 386523 -- 387022
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
Found at i:386552 original size:43 final size:42
Alignment explanation
Indices: 386505--386674 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
386495 AAGAAGAATG
*
386505 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
386548 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
386586 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
386624 AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
386667 AGTACTGA
1 AGTCCTGA
386675 TGACATACAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
42 4 0.04
43 53 0.55
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 386005 -- 386504
ACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 386675 -- 387174
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
Found at i:386673 original size:226 final size:226
Alignment explanation
Indices: 386279--386695 Score: 807
Period size: 226 Copynumber: 1.8 Consensus size: 226
386269 TTCCATCAAA
*
386279 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
*
386344 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
386409 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
386474 TCAAAAGAGTCCTGACCTTTCAAGAAGAATG
196 TCAAAAGAGTCCTGACCTTTCAAGAAGAATG
*
386505 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
386570 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
386635 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
386696 TGGTCATTCC
Statistics
Matches: 188, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
226 188 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (226 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAAGAGTCCTGACCTTTCAAGAAGAATG
Left flanking sequence: Indices 385779 -- 386278
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAACAGTCCTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCT
GACCTTTCAAGAAAGTCCTGACCTTTCCATAACCTTTCCATGAATTTTGGTATGGTCAGCACTAA
TGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 386696 -- 387195
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
TCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
Found at i:386745 original size:16 final size:16
Alignment explanation
Indices: 386721--386751 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
386711 CATTCTCATT
386721 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
386737 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
386752 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 386221 -- 386720
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 386752 -- 387251
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
Found at i:386806 original size:43 final size:43
Alignment explanation
Indices: 386721--386845 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
386711 CATTCTCATT
*** *
386721 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
386761 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *
386804 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
386846 GAGTACTAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 52 0.71
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 386221 -- 386720
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 386846 -- 387345
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:387076 original size:43 final size:42
Alignment explanation
Indices: 387029--387181 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
387019 ACCTTTCAAG
387029 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
387072 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
387107 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
387148 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
387182 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 386529 -- 387028
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 387182 -- 387681
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
Found at i:387287 original size:19 final size:19
Alignment explanation
Indices: 387259--387329 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
387249 CTTCCATAAT
387259 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
387278 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
387296 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
387316 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
387330 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 386759 -- 387258
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 387330 -- 387829
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCT
TTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
Found at i:387307 original size:38 final size:38
Alignment explanation
Indices: 387256--387386 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
387246 GTCCTTCCAT
387256 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
387294 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
387338 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
387375 AATCAGTCCTGA
1 AATCAGTCCTGA
387387 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 386756 -- 387255
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 387387 -- 387886
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGT
CCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAC
Found at i:387362 original size:43 final size:42
Alignment explanation
Indices: 387296--387489 Score: 158
Period size: 43 Copynumber: 4.8 Consensus size: 42
387286 ACCAGAAGAA
**
387296 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
387339 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
387377 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
387415 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
387458 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
387490 CCATTTTTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.03
38 21 0.18
39 3 0.03
41 21 0.18
43 59 0.50
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 386796 -- 387295
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 387490 -- 387989
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACA
AATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTT
TCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAA
GTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCATT
Found at i:387438 original size:76 final size:78
Alignment explanation
Indices: 387258--387445 Score: 265
Period size: 76 Copynumber: 2.4 Consensus size: 78
387248 CCTTCCATAA
*
387258 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCT
387322 TGACCTTTTTGGTAAGG
62 TGACCTTTTTGGTAAGG
* * * *
387339 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
387402 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
387415 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACC
387446 TTTTTGATAA
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
80 3 0.03
81 41 0.42
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 386758 -- 387257
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 387446 -- 387945
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAA
AAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCA
CCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAG
Found at i:387617 original size:43 final size:42
Alignment explanation
Indices: 387570--387722 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
387560 ACCTTTCAAG
387570 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
387613 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
387648 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
387689 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
387723 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 387070 -- 387569
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 387723 -- 388222
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCAC
TGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTA
TGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACATGAAGAACAA
AAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGA
ATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
Found at i:387748 original size:45 final size:45
Alignment explanation
Indices: 387691--387826 Score: 124
Period size: 45 Copynumber: 3.2 Consensus size: 45
387681 TTTGAAAGAC
387691 AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
* * * * * * *
387736 AGTCTTGACC--TTTCA-AA--AGAGTCCTGA--CCTTTCAAAAG
1 AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
* * * *
387774 AGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
387819 AGTCTTGA
1 AGTCTTGA
387827 TGGTCATTCC
Statistics
Matches: 64, Mismatches: 20, Indels: 14
0.65 0.20 0.14
Matches are distributed among these distances:
38 15 0.23
40 11 0.17
41 1 0.02
42 2 0.03
43 12 0.19
45 23 0.36
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (45 bp):
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 387191 -- 387690
AATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
Right flanking sequence: Indices 387827 -- 388326
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCC
TGTCCATCACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTG
ACCAGAAAGGAAAGGTTGTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATT
AGTGCTGACTCTCACATGAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCC
TGACCAAAGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAA
AGGTGATGGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACT
CTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGT
Found at i:387757 original size:19 final size:19
Alignment explanation
Indices: 387730--387786 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 19
387720 TGATGACATA
* *
387730 CAAATGAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
387749 CAAAAGAGTCCTGACCTTT
1 CAAAAGAGTCCTGACCTTT
*
387768 CAAAAGAGTCCTCACCTTT
1 CAAAAGAGTCCTGACCTTT
387787 TTGGTATGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (19 bp):
CAAAAGAGTCCTGACCTTT
Left flanking sequence: Indices 387230 -- 387729
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 387787 -- 388286
TTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCA
CTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGT
ATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACATGAAGAACA
AAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTG
AATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCTTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTT
Found at i:387798 original size:83 final size:83
Alignment explanation
Indices: 387672--387826 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
387662 TGGTAAGGTT
* * *
387672 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
1 AGTCCTGACTTTCAAAGACAGTCCTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
387737 GTCTTGACCTTTCAAAAG
66 GTCTTGACCTTTCAAAAG
* * *
387755 AGTCCTGACCTTTCAAA-AGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCCTGA-CTTTCAAAGACAGTCCTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
387819 AGTCTTGA
65 AGTCTTGA
387827 TGGTCATTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 58 0.89
84 7 0.11
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (83 bp):
AGTCCTGACTTTCAAAGACAGTCCTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAAAAG
Left flanking sequence: Indices 387172 -- 387671
TGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 387827 -- 388326
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCC
TGTCCATCACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTG
ACCAGAAAGGAAAGGTTGTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATT
AGTGCTGACTCTCACATGAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCC
TGACCAAAGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAA
AGGTGATGGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACT
CTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGT
Found at i:387876 original size:16 final size:16
Alignment explanation
Indices: 387852--387882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
387842 CATTCTCATT
387852 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
387868 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
387883 AGACAGTCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 387352 -- 387851
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCT
TGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
TACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 387883 -- 388382
AGACAGTCCTGTCCATCACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTG
CTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTG
TATGCCATTAGTGCTGACTCTCACATGAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCA
TGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAG
CTCATGGAAAGGTGATGGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAG
GTGAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
Found at i:388194 original size:16 final size:16
Alignment explanation
Indices: 388173--388203 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
388163 AGGACTGTCT
388173 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
388189 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
388204 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 387673 -- 388172
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCACTGATTCAGGTCAGAC
AAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCATTAGAAGAAG
GAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACATGAAGAACAAAAAAGGACAATGGCA
ATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGAATCAGCACTCGCAAC
TTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCT
Right flanking sequence: Indices 388204 -- 388703
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
Found at i:388293 original size:19 final size:19
Alignment explanation
Indices: 388269--388325 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 19
388259 ACCATACCAA
*
388269 AAAGGTGAGGACTCTTTTG
1 AAAGGTCAGGACTCTTTTG
388288 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAGGACTCTTTTG
* *
388307 AAAGGTCAAGACTCATTTG
1 AAAGGTCAGGACTCTTTTG
388326 TATGTCATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (19 bp):
AAAGGTCAGGACTCTTTTG
Left flanking sequence: Indices 387769 -- 388268
AAAAGAGTCCTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCAT
CACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAA
AGGAAAGGTTGTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTG
ACTCTCACATGAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAA
AGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGAT
GGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Right flanking sequence: Indices 388326 -- 388825
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATT
Found at i:388329 original size:83 final size:83
Alignment explanation
Indices: 388229--388383 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
388219 GGAATGACCA
* * *
388229 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCT-TTTGAAAGG
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACTCTCTTTCAAA-G
388293 TCAGGACTCTTTTGAAAGG
65 TCAGGACTCTTTTGAAAGG
* * *
388312 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACTCTCTTTCAAAGT
388377 CAGGACT
66 CAGGACT
388384 AACCTTACCA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 59 0.91
84 6 0.09
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (83 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAAGACTCTCTTTCAAAGT
CAGGACTCTTTTGAAAGG
Left flanking sequence: Indices 387729 -- 388228
ACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCACTGATTC
AGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCAT
TAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACATGAAGAACAAAAAAGG
ACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGAATCAGC
ACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCTTGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 388384 -- 388883
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
Found at i:388398 original size:43 final size:42
Alignment explanation
Indices: 388333--388502 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
388323 TTGTATGTCA
* * *
388333 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
388376 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
388414 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
388452 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
388495 TCAGGACT
1 TCAGGACT
388503 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 387833 -- 388332
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCA
TCACCTTTCAAGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGA
AAGGAAAGGTTGTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCT
GACTCTCACATGAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCA
AAGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGA
TGGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 388503 -- 389002
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
Found at i:388481 original size:76 final size:78
Alignment explanation
Indices: 388355--388795 Score: 295
Period size: 76 Copynumber: 5.4 Consensus size: 78
388345 TTATCAAAAA
* * *
388355 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
388418 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
388431 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
388496 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
388513 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACC---AA---AAAGGTCAAGA
* * *
388577 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
388610 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
388673 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
388686 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
388751 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
* *
388767 GGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 GGTCAAGACTGTATTTCAAA-GTCAGGACT
388796 GATTATGGAA
Statistics
Matches: 281, Mismatches: 48, Indels: 67
0.71 0.12 0.17
Matches are distributed among these distances:
76 102 0.36
77 4 0.01
79 4 0.01
80 8 0.03
81 62 0.22
82 7 0.02
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 387855 -- 388354
CCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCAAGAAGGTCACTG
ATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATG
CCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACATGAAGAACAAAA
AAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGAAT
CAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 388796 -- 389295
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Found at i:388612 original size:41 final size:43
Alignment explanation
Indices: 388566--388757 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
388556 CCAAAAATGG
* * * *
388566 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
388607 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
388650 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
388685 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
388726 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
388758 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 388066 -- 388565
GTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGTCTGATCTGAATCAGCACTCGCAACTTT
GAATGACATTAGCTCATGGAAAGGTGATGGACAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 388758 -- 389257
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
GGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
Found at i:388711 original size:38 final size:38
Alignment explanation
Indices: 388669--388799 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
388659 GACTATCTGA
* **
388669 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
388707 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
388750 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
388788 TCAGGACTGATT
1 TCAGGACTGATT
388800 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 388169 -- 388668
GTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTTGAAAGGTCAGGA
CTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 388800 -- 389299
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:388750 original size:19 final size:19
Alignment explanation
Indices: 388726--388796 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
388716 ACCTTACCAA
388726 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
388745 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
388765 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
388783 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
388797 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 388226 -- 388725
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTTGAAA
GGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 388797 -- 389296
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
Found at i:388969 original size:286 final size:291
Alignment explanation
Indices: 388474--389043 Score: 949
Period size: 286 Copynumber: 2.0 Consensus size: 291
388464 TTACCAAAAA
*
388474 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* * *
388539 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
66 CATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
388604 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
388669 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTC
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGATC
388733 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
258 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
388767 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATG
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGTATG
* ** **
388831 CCATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCTTAT
65 CCATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
388890 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
388955 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
389020 AGACTGTCTTGAAAGGTCAGGACT
259 AGACTGTCTTGAAAGGTCAGGACT
389044 TTTGATGGAA
Statistics
Matches: 264, Mismatches: 10, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
286 169 0.64
287 4 0.02
288 1 0.00
289 2 0.01
290 1 0.00
292 1 0.00
293 81 0.31
294 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (291 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 387974 -- 388473
GTCATTGTATGCCATTAGAAGAAGGAGAAATGGCAATTGTATGCCATTAGTGCTGACTCTCACAT
GAAGAACAAAAAAGGACAATGGCAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTTTGT
CTGATCTGAATCAGCACTCGCAACTTTGAATGACATTAGCTCATGGAAAGGTGATGGACAGGACT
GTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAGGACTCTTTTGAAAGGTCAGGA
CTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
Right flanking sequence: Indices 389044 -- 389543
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
Found at i:389039 original size:43 final size:42
Alignment explanation
Indices: 388874--389043 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
388864 TTGTATGTCA
* * * *
388874 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
388917 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
388955 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
388993 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
389036 TCAGGACT
1 TCAGGACT
389044 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 388374 -- 388873
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 389044 -- 389543
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
Found at i:389276 original size:113 final size:116
Alignment explanation
Indices: 389031--389276 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
389021 GACTGTCTTG
*
389031 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
389095 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
389150 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
389214 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
389263 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
389277 TCTTGAAAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 388531 -- 389030
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 389277 -- 389776
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
Found at i:389290 original size:43 final size:43
Alignment explanation
Indices: 389210--389334 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
389200 ATTAGTACTC
* * *
389210 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
389253 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
389296 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
389335 AATGAGAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.05
43 49 0.67
44 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 388710 -- 389209
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 389335 -- 389834
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:389325 original size:16 final size:16
Alignment explanation
Indices: 389304--389334 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
389294 TGATTCTTCT
389304 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
389320 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
389335 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 388804 -- 389303
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 389335 -- 389834
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:389444 original size:43 final size:42
Alignment explanation
Indices: 389381--389550 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
389371 TTGTATGTCA
* * *
389381 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
389424 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
389462 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
389500 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
389543 TCAGGACT
1 TCAGGACT
389551 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 5 0.05
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 388881 -- 389380
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 389551 -- 390050
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
Found at i:389529 original size:76 final size:78
Alignment explanation
Indices: 389403--389845 Score: 308
Period size: 76 Copynumber: 5.4 Consensus size: 78
389393 TTATCAAAAA
* * * *
389403 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
389466 GACTGATTCTTCT
66 GACTGATTCTTCT
389479 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
389544 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
389561 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTGACCTTACC---AA---AAAGGTCAAGA
* * *
389625 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * * *
389658 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
389721 GACTGATTCTTCT
66 GACTGATTCTTCT
*
389734 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
389799 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
* *
389815 GGTCAAGACTGT-CTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTATTTCAAA-GTCAGGACTGA
389846 TTATGGAAGG
Statistics
Matches: 285, Mismatches: 46, Indels: 67
0.72 0.12 0.17
Matches are distributed among these distances:
76 103 0.36
77 4 0.01
79 4 0.01
80 8 0.03
81 65 0.23
82 7 0.02
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 388903 -- 389402
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTC
TTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 389846 -- 390345
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCAT
Found at i:389660 original size:41 final size:43
Alignment explanation
Indices: 389614--389805 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
389604 CCAAAAATGG
* * * *
389614 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
389655 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
389698 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
389733 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
389774 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
389806 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 389114 -- 389613
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 389806 -- 390305
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
Found at i:389700 original size:255 final size:252
Alignment explanation
Indices: 388767--389805 Score: 1110
Period size: 255 Copynumber: 4.1 Consensus size: 252
388757 TGATTCTTCT
*
388767 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATG
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATG
* * ** * **
388831 CCATTAGTACTCACCTGACCATACAA-G--ACTC-A-TTTGTATGTCATCAGTACTCACCTTATC
65 CCATTAGTACTCACCTGACCA-AAAATGAAAGTCAAGACTGTTTGAAATCAGTACTCACCTTATC
388891 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
129 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
*
388956 CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
194 CAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAA
*
389015 GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* *
389080 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
66 CATTAGTACTCACCTGACCAAAAAT-GAAA-GTCAAGACTGT-TTGAAA--TCAGTACTCA-CCT
* ** * ** * * * * ** * *
389145 TCT-GGAAAGGTCAGGACTGAT-TATGGAAGGACAGGACCAA--TT-GC-AATTG-T-ATG-CCA
125 TATCAAAAAGGTCAAGACTG-TCT-TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
* * **** * *
389201 T-TAGTACTCA--CCTTA-TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
188 TCT-G-A-TCAGGACTGATTC-TTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCA
389262 AAAA
249 AAAA
** * * * **
389266 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA-C--TCTG-AAAGG
1 GGTCAAGACTGTCTTGAAAGGTCAGGAC---TT-TTGATGGAAGGACAGGACCAAT-TGCAATTG
* * * * * * ** * * *
389327 TCAGGACTAATGAG-AATGA-TTG---AGGAATGACCA-TCAAGACTCATTTGTATGTCATCAGT
61 T-ATG-C-CATTAGTACTCACCTGACCAAAAATGA-AAGTCAAGACT-GTTTG-A---AATCAGT
389386 ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
117 ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
389451 AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTAC
182 AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTAC
389516 CAAAAA
247 CAAAAA
389522 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
*
389587 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
66 CATTAGTACTCACCTGACCAAAAAT-GAAA-GTCAAGACTGT-TTGAAATCAGTACTCACCTTAT
389652 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
128 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
389717 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
193 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAA
389777 GGTCAAGACTGTCTTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT
389806 GATTCTTCTG
Statistics
Matches: 638, Mismatches: 95, Indels: 109
0.76 0.11 0.13
Matches are distributed among these distances:
247 5 0.01
248 91 0.14
249 22 0.03
250 31 0.05
251 79 0.12
252 28 0.04
253 21 0.03
254 23 0.04
255 197 0.31
256 78 0.12
257 31 0.05
258 21 0.03
259 11 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (252 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGAAAGTCAAGACTGTTTGAAATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAA
Left flanking sequence: Indices 388267 -- 388766
AAAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 389806 -- 390305
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
Found at i:389759 original size:38 final size:38
Alignment explanation
Indices: 389717--389847 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
389707 GACTATCTGA
* **
389717 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
389755 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
389798 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
389836 TCAGGACTGATT
1 TCAGGACTGATT
389848 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 389217 -- 389716
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 389848 -- 390347
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAA
ACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTA
Found at i:389798 original size:19 final size:19
Alignment explanation
Indices: 389774--389844 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
389764 ACCTTACCAA
389774 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
389793 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
389813 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
389831 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
389845 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 389274 -- 389773
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 389845 -- 390344
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCA
Found at i:389985 original size:43 final size:42
Alignment explanation
Indices: 389922--390091 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
389912 TTGTATGTCA
* * * *
389922 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
389965 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
390003 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
390041 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
390084 TCAGGACT
1 TCAGGACT
390092 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 389422 -- 389921
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 390092 -- 390591
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTAC
TTTCCTTATGGAAAGGTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAA
TGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTAAAAGGTCAATACTGTATTTCAA
Found at i:390017 original size:286 final size:291
Alignment explanation
Indices: 389522--390091 Score: 940
Period size: 286 Copynumber: 2.0 Consensus size: 291
389512 TTACCAAAAA
*
389522 GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* * *
389587 CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
66 CATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
389652 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
389717 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTC
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGATC
389781 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
258 AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
389815 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATG
1 GGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGTATG
* ** **
389879 CCATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCTTAT
65 CCATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTAT
389938 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
129 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
390003 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
390068 AGACTGTCTTGAAAGGTCAGGACT
259 AGACTGTCTTGAAAGGTCAGGACT
390092 TTTGATGGAA
Statistics
Matches: 263, Mismatches: 11, Indels: 13
0.92 0.04 0.05
Matches are distributed among these distances:
286 168 0.64
287 4 0.02
288 1 0.00
289 2 0.01
290 1 0.00
292 1 0.00
293 81 0.31
294 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (291 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 389022 -- 389521
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAA
Right flanking sequence: Indices 390092 -- 390591
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTAC
TTTCCTTATGGAAAGGTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAA
TGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTAAAAGGTCAATACTGTATTTCAA
Found at i:390176 original size:95 final size:99
Alignment explanation
Indices: 390060--390253 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
390050 ACCTTACCAA
* *
390060 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
390121 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
390155 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
390220 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
390254 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 389560 -- 390059
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 390254 -- 390753
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTA
CTCACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGACTAATTGCAA
TTCAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGG
ACTCATTATGGAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTAAAGGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTAAAAGGTCAA
TACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
Found at i:390198 original size:24 final size:24
Alignment explanation
Indices: 390169--390214 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
390159 GTCAAGACTG
390169 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
390193 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
390215 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 389669 -- 390168
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 390215 -- 390714
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCA
TTAGTACTTTCCTTATGGAAAGGTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTAC
AACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTTTTCTTAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
ATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
Found at i:390254 original size:28 final size:28
Alignment explanation
Indices: 390222--390328 Score: 198
Period size: 28 Copynumber: 3.8 Consensus size: 28
390212 ATTGCAATTC
390222 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
390250 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
390278 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
390306 AATGCCATTAGTACTCACTTGAC
1 AATGCCATTAGTACTCACTTGAC
390329 CAAAAATTGT
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
27 2 0.03
28 73 0.95
29 2 0.03
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 389722 -- 390221
ACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 390329 -- 390828
CAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGACTAATTGCAATTCAATGTCA
TTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATG
GAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTAAAAGGTCAATACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTTTCCA
TATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCA
Found at i:390573 original size:86 final size:86
Alignment explanation
Indices: 390483--390668 Score: 318
Period size: 86 Copynumber: 2.2 Consensus size: 86
390473 CACCTTATCA
390483 AAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
* *
390548 AGGTCAGGACTGATTTTTCTT
66 AGGTCAGGACTCATTCTTCTT
* *
390569 AAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
390634 AGGTCAGGACTCATTCTTCTT
66 AGGTCAGGACTCATTCTTCTT
* *
390655 GAAAGGTCAGGACT
1 AAAAGGTCAAGACT
390669 CATTGCAATT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 93 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (86 bp):
AAAAGGTCAAGACTGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTT
Left flanking sequence: Indices 389983 -- 390482
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGAC
TGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAA
TGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAGGTCAGG
ACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAAT
GAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATCA
Right flanking sequence: Indices 390669 -- 391168
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACT
CACTGTACAAACAAATGTCATTAGTACTCACCATACCCAATGGCAATTGTATGCCATTAGTGTTT
CCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTATAGTTGTGCACTGACCTTGACCT
TTCAATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGACGTGAT
GGTCAAACTCTCAAAGAAGGCACGGCCGAGGTGACGGATCGCCTCCACGGCATAGGTAGTCGCAG
CAGGAGAAGCGGAGAAGCACCCCTCAACCCCTGAGGTGTTGATCACTCGACCCAACGAGAGGAGG
CGATAGCCGTTGAGAGCCAGAGTGAGCCTTTGAAGCTTGCTTGCT
Found at i:390583 original size:24 final size:25
Alignment explanation
Indices: 390541--390588 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
390531 GTCAAGACTG
* *
390541 TCTTGAAAGGTCAGGACTG-ATTTT
1 TCTTAAAAGGTCAAGACTGTATTTT
*
390565 TCTTAAAAGGTCAATACTGTATTT
1 TCTTAAAAGGTCAAGACTGTATTT
390589 CAAGGTCAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (25 bp):
TCTTAAAAGGTCAAGACTGTATTTT
Left flanking sequence: Indices 390041 -- 390540
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAA
GGTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATA
CCAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 390589 -- 391088
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTTTCCA
TATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCCAATGGCAATTGT
ATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTATAGTTGTG
CACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCGTGAC
GTGACGTGACGTGATGGTCAAACTCTCAAAGAAGGCACGGCCGAGGTGACGGATCGCCTCCACGG
CATAGGTAGTCGCAGCAGGAGAAGCGGAGAAGCACCCCTCAACCC
Found at i:390656 original size:24 final size:24
Alignment explanation
Indices: 390627--390672 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
390617 GTCAAGACTG
390627 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
390651 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
390673 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 390127 -- 390626
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTC
ACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGACTAATTGCAATTC
AATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGAAAGGTCAGGACT
CATTATGGAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTAAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTAAAAGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 390673 -- 391172
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTACAAACAAATGTCATTAGTACTCACCATACCCAATGGCAATTGTATGCCATTAGTGTTTCCAC
AAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTATAGTTGTGCACTGACCTTGACCTTTCA
ATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGACGTGATGGTC
AAACTCTCAAAGAAGGCACGGCCGAGGTGACGGATCGCCTCCACGGCATAGGTAGTCGCAGCAGG
AGAAGCGGAGAAGCACCCCTCAACCCCTGAGGTGTTGATCACTCGACCCAACGAGAGGAGGCGAT
AGCCGTTGAGAGCCAGAGTGAGCCTTTGAAGCTTGCTTGCTGCAT
Found at i:390663 original size:43 final size:43
Alignment explanation
Indices: 390459--390644 Score: 237
Period size: 43 Copynumber: 4.3 Consensus size: 43
390449 ACTCATTATG
* * * *
390459 GAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATT
1 GAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATT
* *
390502 TAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 GAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATT
** * ** *
390545 GAAAGGTCAGGACTGATTTTTCTTAAAAGGTCAATACTGTATT
1 GAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATT
** *
390588 TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 GAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATT
390631 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
390645 CATTCTTCTT
Statistics
Matches: 118, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 118 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (43 bp):
GAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATT
Left flanking sequence: Indices 389959 -- 390458
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAA
TTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAG
TACTTTCCTTATGGAAAGGTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACA
AAATGTCATTAACCATACCAAAATGAAAGGTCAGGACTCATTATG
Right flanking sequence: Indices 390645 -- 391144
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCCAAT
GGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCT
ATAGTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTT
GCTCGTGACGTGACGTGACGTGATGGTCAAACTCTCAAAGAAGGCACGGCCGAGGTGACGGATCG
CCTCCACGGCATAGGTAGTCGCAGCAGGAGAAGCGGAGAAGCACCCCTCAACCCCTGAGGTGTTG
ATCACTCGACCCAACGAGAGGAGGCGATAGCCGTTGAGAGCCAGA
Found at i:390712 original size:28 final size:28
Alignment explanation
Indices: 390680--390829 Score: 194
Period size: 28 Copynumber: 5.6 Consensus size: 28
390670 ATTGCAATTC
390680 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
390708 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
390736 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
390764 AATGCCATTAGTACT---TT--C---CA
1 AATGCCATTAGTACTCACTTGACAAACA
*
390784 TATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
390812 AATGTCATTAGTACTCAC
1 AATGCCATTAGTACTCAC
390830 CATACCCAAT
Statistics
Matches: 108, Mismatches: 3, Indels: 22
0.81 0.02 0.17
Matches are distributed among these distances:
20 16 0.15
22 1 0.01
23 1 0.01
25 1 0.01
26 1 0.01
27 2 0.02
28 86 0.80
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 390180 -- 390679
CAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGAC
TAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATACCAAAATGA
AAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTAA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTA
AAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 390830 -- 391329
CATACCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTT
GGCTCTGCCTATAGTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGC
GTAGGGCTTTGCTCGTGACGTGACGTGACGTGATGGTCAAACTCTCAAAGAAGGCACGGCCGAGG
TGACGGATCGCCTCCACGGCATAGGTAGTCGCAGCAGGAGAAGCGGAGAAGCACCCCTCAACCCC
TGAGGTGTTGATCACTCGACCCAACGAGAGGAGGCGATAGCCGTTGAGAGCCAGAGTGAGCCTTT
GAAGCTTGCTTGCTGCATCCGGAACAAGCAAGGGATTGAGAAAGTACGCTAAGCAAGACAAGAAA
GGCTAACGAACAAGCAACTCCATGCATGAGCGCGGGATGCGGAACGACCACCGTTTCGCGTTCAT
GAGAGAATGCTGACACTGCACACGGACTCTACCGCCTTGCACGGT
Found at i:390833 original size:48 final size:48
Alignment explanation
Indices: 390737--390833 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
390727 TGACAAACAA
**
390737 ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACCAT
*
390785 ATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACCAT
390833 A
1 A
390834 CCCAATGGCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (48 bp):
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACCAT
Left flanking sequence: Indices 390237 -- 390736
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACA
AACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGCCATTAGTACTTTCCTTATGGAAAG
GTCAGGACTAATTGCAATTCAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAACCATAC
CAAAATGAAAGGTCAGGACTCATTATGGAAAAGTCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTATTTAAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
Right flanking sequence: Indices 390834 -- 391333
CCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCT
CTGCCTATAGTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGCGTAG
GGCTTTGCTCGTGACGTGACGTGACGTGATGGTCAAACTCTCAAAGAAGGCACGGCCGAGGTGAC
GGATCGCCTCCACGGCATAGGTAGTCGCAGCAGGAGAAGCGGAGAAGCACCCCTCAACCCCTGAG
GTGTTGATCACTCGACCCAACGAGAGGAGGCGATAGCCGTTGAGAGCCAGAGTGAGCCTTTGAAG
CTTGCTTGCTGCATCCGGAACAAGCAAGGGATTGAGAAAGTACGCTAAGCAAGACAAGAAAGGCT
AACGAACAAGCAACTCCATGCATGAGCGCGGGATGCGGAACGACCACCGTTTCGCGTTCATGAGA
GAATGCTGACACTGCACACGGACTCTACCGCCTTGCACGGTTGGC
Found at i:392485 original size:15 final size:16
Alignment explanation
Indices: 392460--392489 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
392450 CGTTTGGTTA
392460 GCGGTGGAGATCAGAG
1 GCGGTGGAGATCAGAG
392476 GCGG-GGAGATCAGA
1 GCGGTGGAGATCAGA
392490 CCCATCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.13, G:0.50, T:0.10
Consensus pattern (16 bp):
GCGGTGGAGATCAGAG
Left flanking sequence: Indices 391960 -- 392459
GAATGTCGACTAGCGGAACAAGAACCTCCACTATGATATAGTTAGTGAACCACCGCAGCAAAGGG
ATTTCTCTCTCCGTCCTGCACGGAAGGCAAGTAGGAGTGGAAGTTGAGTGCATGAACTGCAAGAG
CAGGCTCTTTTTCGGGCAAGAAGGCAAGCTGACTGAGATCAGAGACGCAGGCGTCGAGCAGCCCT
ATCGAAAAACCAGGCTAGGCGTGCGGGAAGGGAGCGAGAGGAGAAACCACTCGAGTCAGTACTGT
CTCTTGGGAACCGCAGATTGGCTCTTTCCTTTGTCAGGTAGCGAGCAGTTCTGGGGGTACGAGGA
GGCAGTTTGAACGGAAACTTTGATAAGCATGACGGTTTTTAGCCGAACCTGAACAGCATGACGGC
ACGCCCATGACGGTTTTGCTTCTTGCTTTCGGAGGTCAGATCAGAGAATCTTTCCTTTTTCAGTT
CGGTGCAGTCGGTAGATCAGAGAGTCTCTCGTTTCCGTTTGGTTA
Right flanking sequence: Indices 392490 -- 392989
CCCATCTTGTAGGATTTGGTTGTGGTTGTTGAATGAGATCTGGCGCCTCATCTCTGACAGAGGCT
TGACTAGGCCCCTTGAAAGGCTGTCTTTTTGCCTTGTTGCTGGCTTCTTCCTTCAAGTGGCTTGA
CTCGGAGCATGGCCATCATTCTCACCGACTTGGAAGCAGCGGTCTCGATTTTGAGCTTTGCTTCC
TTCTGAGGCGGGGACAGGATTCGAACCTGCAATCTTCAGGTCATGAGCCTGATGAGTCGACCAAT
TCCTCTACCCCGCTTGTTCCCCCTCTCTTTCTTTCACTATGGACACCTAGGTCCCGGCTTTGGTT
GCTTGGCCAACGAGCAAAGCGCTCGCCGCGAAGCGAGTGCTTGAGGATAGAACCAGCGCGTGCTA
GGCGGCGCTTCTTTGGTTGGAGCTCCGCTCTTCCCCTCGCTAGCCCTTCGTGCATGAGCAAAGCC
GCCCTCTTCGAGGCCGCCTTACCTGACATATGCGGCTAGGGTTGG
Found at i:398475 original size:55 final size:55
Alignment explanation
Indices: 398391--398517 Score: 204
Period size: 55 Copynumber: 2.3 Consensus size: 55
398381 GAGCTTTTTG
398391 GTATGGTCAGCACT-AATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTT
1 GTATGGTCAGCA-TGAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTT
* *
398446 GTATGGTCAGCATGAATGGCAT-CTCATTGCAATTATGGTTGGTATACAATTTGTT
1 GTATGGTCAGCATGAATGGCATAC-AATTGCAATTATGGTTGGCATACAATTTGTT
398501 GTATGGTCAGCATGAAT
1 GTATGGTCAGCATGAAT
398518 TTTGATGGAC
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
54 2 0.03
55 66 0.97
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (55 bp):
GTATGGTCAGCATGAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTT
Left flanking sequence: Indices 397891 -- 398390
TGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTACCCCCGCACAGGTT
TCCGTCTCTATCGTAGATCAGATCCTTTCTGAACCCCCCTATGACCGCTATCAAAGACAGAGAAT
TTGCTATAGACAACAAGTCCGCTGAGTCCGCGCTATACTCAGATAAGAAAAAGGAGAAGTGGCTT
GGCTATAGCCAACAAGTCCGCTGAGAACGACGACGAAAGAGAAGTGGAGAGAGTTGCAAGTCGTT
TGGTTGTGTTTCGGAATGAGGGGGAGGCCAAGGCCTTCCACAAGTGGAAGCTTCCTGGCAAAGCT
TCAAAAAAAGAGGTTGGGCTGTTCATTGACTTGACTTCACTTTACTTAAGATTGAAGATACGGGC
CGGGCGGGCAGTGATCAAAGCACTCGCAACTTGCAATTGCTTAAGGGAACGTCACGTCACGAGCA
AAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTG
Right flanking sequence: Indices 398518 -- 399017
TTTGATGGACATACAATTTGTGTGATGTACTAATGGCATACAATTGCCATTGGGTATGGTGAGTA
CTAATGACAATTGTATGTCATTAGTACTCACTATACCAAAAAATTGTATGTCCATCAAAATTCAT
GCTGACCATACCACAAATTGTATGCCATTATCCATCACACAAATTTGCATGGATTTTGGAAGGCA
TACAATTGCCATTGGGTATGGAAAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAG
TCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
Found at i:398776 original size:28 final size:28
Alignment explanation
Indices: 398736--398856 Score: 217
Period size: 28 Copynumber: 4.3 Consensus size: 28
398726 GGGTATGGAA
*
398736 AATGACATTTGTTTGT-ACAGTGAGTACT
1 AATGGCATTTGTTTGTCA-AGTGAGTACT
398764 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
398792 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
398820 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
398848 AATGGCATT
1 AATGGCATT
398857 GAATTGCAAT
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
28 90 0.99
29 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 398236 -- 398735
GTTCATTGACTTGACTTCACTTTACTTAAGATTGAAGATACGGGCCGGGCGGGCAGTGATCAAAG
CACTCGCAACTTGCAATTGCTTAAGGGAACGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGT
GCTTCTTCAAAGTATGAGCTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTT
GGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGTTGGTATACAAT
TTGTTGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTACTAATGGCATACAA
TTGCCATTGGGTATGGTGAGTACTAATGACAATTGTATGTCATTAGTACTCACTATACCAAAAAA
TTGTATGTCCATCAAAATTCATGCTGACCATACCACAAATTGTATGCCATTATCCATCACACAAA
TTTGCATGGATTTTGGAAGGCATACAATTGCCATTGGGTATGGAA
Right flanking sequence: Indices 398857 -- 399356
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGT
Found at i:399043 original size:43 final size:42
Alignment explanation
Indices: 398982--399202 Score: 246
Period size: 43 Copynumber: 5.2 Consensus size: 42
398972 TTCCATCAAA
*
398982 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
399025 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
399068 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
399109 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
399152 AGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
399195 AGTACTGA
1 AGTCCTGA
399203 TGACATACAA
Statistics
Matches: 147, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
41 29 0.20
42 9 0.06
43 109 0.74
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 398482 -- 398981
GGTTGGTATACAATTTGTTGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTA
CTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACAATTGTATGTCATTAGTACTC
ACTATACCAAAAAATTGTATGTCCATCAAAATTCATGCTGACCATACCACAAATTGTATGCCATT
ATCCATCACACAAATTTGCATGGATTTTGGAAGGCATACAATTGCCATTGGGTATGGAAAATGAC
ATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 399203 -- 399702
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTCCTGACCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGT
Found at i:399100 original size:19 final size:19
Alignment explanation
Indices: 399076--399140 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
399066 TCAGTACTGA
399076 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
399095 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
*
399119 TTTCAAGACAGTATTGACC
1 TTTCAAGACAGTCTTGACC
399138 TTT
1 TTT
399141 TTGGTAAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
19 19 0.50
20 1 0.03
23 1 0.03
24 17 0.45
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 398576 -- 399075
GTGAGTACTAATGACAATTGTATGTCATTAGTACTCACTATACCAAAAAATTGTATGTCCATCAA
AATTCATGCTGACCATACCACAAATTGTATGCCATTATCCATCACACAAATTTGCATGGATTTTG
GAAGGCATACAATTGCCATTGGGTATGGAAAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGT
CAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 399141 -- 399640
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
TTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGAC
Found at i:399136 original size:84 final size:85
Alignment explanation
Indices: 398986--399183 Score: 229
Period size: 84 Copynumber: 2.3 Consensus size: 85
398976 ATCAAAAGTC
*** * ** * *
398986 CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
1 CTGA-CTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACTTTGAAAGACAGTATTG
399051 ACCTTTTTGATAAGGTCAGTA
65 ACCTTTTTGATAAGGTCAGTA
*
399072 CTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTT-CAAGACAGTATTG
1 CTGACTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA-CTTTGAAAGACAGTATTG
* *
399135 ACCTTTTTGGTAAGGTCAGTC
65 ACCTTTTTGATAAGGTCAGTA
** *
399156 CTGACTGTGAAATACAGTCTTGACCTTT
1 CTGACT-TTCAAGACAGTCTTGACCTTT
399184 TTGATAAGGT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
84 68 0.72
85 5 0.05
86 22 0.23
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (85 bp):
CTGACTTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACTTTGAAAGACAGTATTGA
CCTTTTTGATAAGGTCAGTA
Left flanking sequence: Indices 398486 -- 398985
GGTATACAATTTGTTGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTACTAA
TGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACAATTGTATGTCATTAGTACTCACTA
TACCAAAAAATTGTATGTCCATCAAAATTCATGCTGACCATACCACAAATTGTATGCCATTATCC
ATCACACAAATTTGCATGGATTTTGGAAGGCATACAATTGCCATTGGGTATGGAAAATGACATTT
GTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
Right flanking sequence: Indices 399184 -- 399683
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGTC
Found at i:399136 original size:127 final size:127
Alignment explanation
Indices: 398982--399576 Score: 452
Period size: 127 Copynumber: 4.6 Consensus size: 127
398972 TTCCATCAAA
*
398982 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
399047 CTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
66 CTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
* * *
399109 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
* * *
399174 CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA-ATGAGTCTTGACCTTTC----AAAA
66 CTTGACCTTTTTGATAAGGTCAGTACTGAT----TTCAAGA-CAGTCTTGACCTTTCAAGAAAAA
*
399234 -G
126 TC
* * * * * *
399235 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC--TTT--CAA-GACAGTCTTGACCTTTCCAG
1 AGTCCTGACCTTTC---AAG-A-CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTTT-GA-
* ** * * * * ** *
399295 AAGAATCAGTCCTGACCTTTCAAGA-CA-GTC-TTGACCT-TTTTGGTAAGGTTAGTCCTGA-CT
58 AAG-A-CAGTCTTGACCTTT-TTGATAAGGTCAGT-A-CTGATTT--CAA-GACAGTCTTGACCT
** **
399355 GTGAAAGACAGTATTGACCAGA
115 -TTCAAGA-A--A---A--ATC
* * * * * *
399377 AGAAT-CAGTCCTGATC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AG--TCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
399440 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
63 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
*
399505 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
399570 CTTGACC
66 CTTGACC
399577 AGAAGAATCA
Statistics
Matches: 353, Mismatches: 64, Indels: 102
0.68 0.12 0.20
Matches are distributed among these distances:
126 27 0.08
127 157 0.44
128 8 0.02
129 17 0.05
130 8 0.02
131 42 0.12
132 2 0.01
133 1 0.00
134 1 0.00
135 1 0.00
136 14 0.04
137 6 0.02
138 24 0.07
139 10 0.03
140 9 0.03
141 2 0.01
142 8 0.02
143 13 0.04
144 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (127 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
Left flanking sequence: Indices 398482 -- 398981
GGTTGGTATACAATTTGTTGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGTGATGTA
CTAATGGCATACAATTGCCATTGGGTATGGTGAGTACTAATGACAATTGTATGTCATTAGTACTC
ACTATACCAAAAAATTGTATGTCCATCAAAATTCATGCTGACCATACCACAAATTGTATGCCATT
ATCCATCACACAAATTTGCATGGATTTTGGAAGGCATACAATTGCCATTGGGTATGGAAAATGAC
ATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 399577 -- 400076
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGTCCATCACCGGAAGGTCACTG
ATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATCACACAAAGAATGAAGATCAATGACAATT
GTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCTCACAT
GCTTTGCGAGTGCGCTTTGTACGTCATGAGCACTGAAAAGCGAGTGCTTTGTGCAAAAAGCGCAC
TCGCTTCGCTTTGGCTTTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTTCCCTA
ACGCAATTCTCATTGAAAGTTGCGACGGTGCATTCAAAGTTGCGA
Found at i:399237 original size:19 final size:19
Alignment explanation
Indices: 399216--399333 Score: 83
Period size: 19 Copynumber: 5.7 Consensus size: 19
399206 CATACAAATG
* *
399216 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
*
399235 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-C
*
399259 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
399278 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AA-AA-C
*
399302 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
399321 AGTCTTGACCTTT
1 AGTCCTGACCTTT
399334 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 20
0.74 0.07 0.18
Matches are distributed among these distances:
19 38 0.47
20 3 0.04
21 4 0.05
22 4 0.05
23 4 0.05
24 28 0.35
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 398716 -- 399215
AATTGCCATTGGGTATGGAAAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCT
TGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 399334 -- 399833
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTCCTGACCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTTCAAAACAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAAT
CCTGACAAGTGCTGACCATCACACAAAGAATGAAGATCAATGACA
Found at i:399266 original size:24 final size:23
Alignment explanation
Indices: 399212--399316 Score: 100
Period size: 24 Copynumber: 4.8 Consensus size: 23
399202 ATGACATACA
*
399212 AATGAGTCTTGACCTTTC--AA-
1 AATGAGTCCTGACCTTTCAGAAG
399232 AA-GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTC-AGAAG
399255 AATGAGTCCTGACCTTTC--AAG
1 AATGAGTCCTGACCTTTCAGAAG
* *
399276 -A-CAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTT-CAGAAG
*
399298 AATCAGTCCTGACCTTTCA
1 AATGAGTCCTGACCTTTCA
399317 AGACAGTCTT
Statistics
Matches: 71, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
19 26 0.37
20 4 0.06
21 3 0.04
22 5 0.07
23 5 0.07
24 28 0.39
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (23 bp):
AATGAGTCCTGACCTTTCAGAAG
Left flanking sequence: Indices 398712 -- 399211
ATACAATTGCCATTGGGTATGGAAAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 399317 -- 399816
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGTCCATCACCGGAAGGTCACTG
ATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATCACACAAAG
Found at i:399268 original size:43 final size:43
Alignment explanation
Indices: 399212--399620 Score: 209
Period size: 43 Copynumber: 9.9 Consensus size: 43
399202 ATGACATACA
* * * *
399212 AATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
399255 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
399298 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * ** *
399342 -GTTAGTCCTGA-CTGTGAAAGACAGTATTGA-C---C-AGAAG
1 AATGAGTCCTGACCT-TTCAAGACAGTCTTGACCTTTCAAGAAG
* * * ***
399379 AATCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * ** *
399418 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* * * *
399461 -GTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
399501 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * *
399545 -GTCAGTCCTGA-CTTTGAAATACAGTCTTGA-C---C-AGAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCAAGAAG
* * * *
399582 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA
399621 AAAAGGTGAG
Statistics
Matches: 285, Mismatches: 54, Indels: 54
0.73 0.14 0.14
Matches are distributed among these distances:
33 10 0.04
34 1 0.00
37 6 0.02
38 42 0.15
39 8 0.03
40 6 0.02
41 25 0.09
42 12 0.04
43 166 0.58
44 9 0.03
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 398712 -- 399211
ATACAATTGCCATTGGGTATGGAAAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 399621 -- 400120
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGTCCT
GACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTG
TCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATCACACAAA
GAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAG
TGAGTCTGAATCAGCTCACATGCTTTGCGAGTGCGCTTTGTACGTCATGAGCACTGAAAAGCGAG
TGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGCTTTGCACAAAGCACTCGCAAAGCGTAGGG
CTTTGCTCGTGACGTTCCCTAACGCAATTCTCATTGAAAGTTGCGACGGTGCATTCAAAGTTGCG
AGTTTTGGGCTTTGCTAATCTAAGAACGTGACGTTGGGGGAATGA
Found at i:399422 original size:76 final size:78
Alignment explanation
Indices: 399291--399449 Score: 241
Period size: 76 Copynumber: 2.0 Consensus size: 78
399281 CTTGACCTTT
399291 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTG
399356 TGAAAGACAGTATTGA
63 TGAAAGACAGTATTGA
* * *
399372 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
*
399435 AAGACAGTCTTGA
66 AAGACAGTATTGA
399448 CC
1 CC
399450 TTTTTGATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 53 0.72
77 2 0.03
81 19 0.26
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTATTGA
Left flanking sequence: Indices 398791 -- 399290
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 399450 -- 399949
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGTCCATCACCGGAAGGTCACTGATT
CAGGTCAGACAAATCCTGACAAGTGCTGACCATCACACAAAGAATGAAGATCAATGACAATTGTC
CATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCTCACATGCT
TTGCGAGTGCGCTTTGTACGTCATGAGCACTGAAAAGCGAGTGCT
Found at i:399496 original size:19 final size:19
Alignment explanation
Indices: 399472--399536 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
399462 TCAGTACTGA
399472 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
399491 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
399515 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
399534 TTT
1 TTT
399537 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 398972 -- 399471
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAA
AAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 399537 -- 400036
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CCTTTCTATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCAAAACAGTCCTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAA
GTGCTGACCATCACACAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTT
GTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCTCACATGCTTTGCGAGTGCGCTTTGTACGTC
ATGAGCACTGAAAAGCGAGTGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGCTTTGCACAAA
GCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTTCCCTAACGCA
Found at i:399523 original size:84 final size:80
Alignment explanation
Indices: 399421--399617 Score: 236
Period size: 84 Copynumber: 2.4 Consensus size: 80
399411 TGGTAAGGTT
* *
399421 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGACAGT
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGT
399484 CTTGACCTTTCAAGAAAAATC
65 CTTGA-C---C-AGAAAAATC
* * *
399505 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGT
*
399570 CTTGACCAGAAGAATC
65 CTTGACCAGAAAAATC
* *
399586 AGTCCTGATCTTTCAAGATAGTCTTGATCTTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTT
399618 CAAAAAAGGT
Statistics
Matches: 101, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
81 37 0.37
82 1 0.01
84 43 0.43
85 8 0.08
86 12 0.12
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (80 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGTC
TTGACCAGAAAAATC
Left flanking sequence: Indices 398921 -- 399420
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 399618 -- 400117
CAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCTATAATGAGT
CCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTC
CTGTCCATCACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATCACAC
AAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCA
GAGTGAGTCTGAATCAGCTCACATGCTTTGCGAGTGCGCTTTGTACGTCATGAGCACTGAAAAGC
GAGTGCTTTGTGCAAAAAGCGCACTCGCTTCGCTTTGGCTTTGCACAAAGCACTCGCAAAGCGTA
GGGCTTTGCTCGTGACGTTCCCTAACGCAATTCTCATTGAAAGTTGCGACGGTGCATTCAAAGTT
GCGAGTTTTGGGCTTTGCTAATCTAAGAACGTGACGTTGGGGGAA
Found at i:405534 original size:32 final size:32
Alignment explanation
Indices: 405493--405605 Score: 154
Period size: 32 Copynumber: 3.4 Consensus size: 32
405483 CATCAAAATG
405493 AGTGCTGACCATCAAACCAATTGTATGCCATT
1 AGTGCTGACCATCAAACCAATTGTATGCCATT
*
405525 AGTGCTGACCATATCAAAAATGCAATTGTATGCCATT
1 AGTGCTGACC--ATC--AAA-CCAATTGTATGCCATT
* *
405562 AGTGCTGACCATCACACAAATTGTATGCCATT
1 AGTGCTGACCATCAAACCAATTGTATGCCATT
405594 AGTGCTGACCAT
1 AGTGCTGACCAT
405606 ACCAAAACCA
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
32 36 0.50
33 2 0.03
34 3 0.04
35 3 0.04
36 3 0.04
37 25 0.35
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (32 bp):
AGTGCTGACCATCAAACCAATTGTATGCCATT
Left flanking sequence: Indices 404993 -- 405492
AGCCTGACCTTACCAGCTACGTTGGAGGAGAAGTTATAGCCGCTGCCCCCTTTGCCTATCTTCCT
GCTCTGCCAGTAGACCTCCTTGAAAACCATCCTTCCCCTCCAATTCGGACATCGCTGATGCCGTC
AGTGTGACTAGTAGATTGACTAGTCACCCCGGTTTGGAGCATTGGAATGCATCGCTAAGGATAAT
TCAGTCTCTCGCGCATTTATCTTGATCTGGTGTATGGAAGATCAAGTCTTCTACTAGAAGGATAT
AGCGATGCGGATTAGGGCCACTGTCAGGTGGATCTTCATTCTTCATGTATGGAGGAGCTCACTTC
TCACTAGGATAGTCAAAGCACTCGCAACGTCGAAAGGATGCGTTAGGGAACGAGCAAAGCGAAGA
ATGACGTCAGGGAACGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCGTGCTTTTGATCA
AGGAAGACAATTTCTTGAAAGAAAAGGACAATGACCATCAAAATG
Right flanking sequence: Indices 405606 -- 406105
ACCAAAACCAAAATGGTGAAGATCATTCCATTCCAATTGTCCATCAATATGAGTTCCCTTCTTGT
CTGATAGTCTATCAGAGTGATCTGAATCAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGCAATTG
AAAGGTCAGCACACAACTATAGGCAGAGCCAAAGCAAAGTCTGATAAGCTTTGCGAGTTCTTTGT
GCAATCACTCACAAAGCTCACATGCTTTGCGAGTGCGCTTATCTCAGACAAAATTCACTATGTTA
TGGTTTCCTTTATGAGTTCCCTTGCTTCAGAAAGCACTCGCTTTTCAGTGCTCATGAGGGCTCTC
ATCCTCATCTTTTGGCTGGGTGCAGATGGATTCGGGGAGGGAATGAGTGGAACTTGACCACTCGA
CTGAAAGTGAAAGAACTCCATTACTAAATGGAGAGGATCAGTGCTATTCAAATGTCTAACCTACC
GATTCCGGTGTTAGGGCTAAGCTAATATGCTGTGCTTGATTCCTT
Found at i:407155 original size:15 final size:15
Alignment explanation
Indices: 407131--407160 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
407121 AGTGCTGGTT
407131 CATTTAAGTAGAGGG
1 CATTTAAGTAGAGGG
*
407146 CATTTCAGTAGAGGG
1 CATTTAAGTAGAGGG
407161 GGTCATGTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.10, G:0.33, T:0.27
Consensus pattern (15 bp):
CATTTAAGTAGAGGG
Left flanking sequence: Indices 406631 -- 407130
AGGTTGAATTTCGTCCTATTCAGTCACGTAAAGGGGAGGGCGATCAAGGAAGAGATAGGAATGAC
TCACCCTACCCTTCCTTCTCCCAGTTACTGCCTATAACGAGTGAGTTACCGGGTCAAAAGCATGT
GATAGGTTTGGTTTTCTATAGATGCTTTCATGCTTAGCGCCCTCTTTTCCCGACTAGGAAAGAGC
ACTTTCTGGCAACAGGATCCACTCGAATCAGTCCTCCAGTATCTCTGGTTTCGGGATCAGATAGG
CTTCTTTCCCCACCCGAGGAGTTGACTTCTCGACCGTCGGCAGCATATTCGACCATTCCATTGAT
CGGAGGGAACTGGAAGATCTGTCCTATGAAGGTGGGAATGAAAGGAATGCACCAGCTTCTGCCGA
TCCTCTCCCGATAGACCCATAGGATTCTCCCATCTATAAAATGCGGAAAGAAGAGTGAGTTATCA
ACCGCCCGGCCCTATTGGAATTGAAAAGGCTTTGAAGTGCTGGTT
Right flanking sequence: Indices 407161 -- 407660
GGTCATGTCTCTTTCTTGGCTCGATCTTGCCGACTTTCCAGTATTGAGTGTTGACAAAAGTGGTC
AAGATCTTCTTTCGTCACTTTGACTTCTTCAGTCGACGCACTCCTTGTTCAGCTGTTCTTTCCCC
ATCAAGTCAAGAAAGAGGACGGCGTGCAACAGGTCCATGAAGCAACCTCGTTTTGTGGATTCAGA
TACGGTTCGGCTTCCACGGGGAGGAATGCGTCAGCTGAGAAGTCCCCACATGGAAAGAAGAGCCA
TTACCTCAGAGAGAAGGGTCAACGATGATTGAAAGAAAAAAGCCGTTCATTCCGCCCTCCGCATC
TTCAAGCACTCCCCCGCCGCTAGCTATAGTAGGTGCTTACCCAGCGATCTGCGAAAAGCCTTTTT
TCTTGACCATTTTGCCTTTCCACTTGCGGAATCGCACGTCGAGCTTGATCTTTCCAACCTTCCCC
TATTTGTTTGATATAATCTATAGTCAGCATATAGATGAAGCTGAT
Found at i:409614 original size:16 final size:16
Alignment explanation
Indices: 409593--409623 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
409583 AGGACCCTTT
409593 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
409609 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
409624 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 409093 -- 409592
TCGCCTGCGAGTGTCGGTCTCACACTCTTCTTTTGCTTCTGCTTTTTCATTGATTCCCCGGGCTT
GGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACAGTTCGAGGTCGGA
ATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTTCTTTCCTATGGATGAAC
AAGAAGGAAGCTCGCGACTATCCTCGCTTCGCAGCTCGCTCCTACAAGTCCACTTCGCTCGTACA
AAGCACTCGCAAAGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACCATTTCTGACCATAT
GGAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGT
GATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 409624 -- 410123
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
Found at i:409690 original size:43 final size:42
Alignment explanation
Indices: 409642--409739 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
409632 TGATTGAGGA
* * * *
409642 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
409685 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
409727 AAAGATCAGAACT
1 AAAG-TCAGAACT
409740 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 409142 -- 409641
TTGATTCCCCGGGCTTGGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCC
ACAGTTCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTTC
TTTCCTATGGATGAACAAGAAGGAAGCTCGCGACTATCCTCGCTTCGCAGCTCGCTCCTACAAGT
CCACTTCGCTCGTACAAAGCACTCGCAAAGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGA
CCATTTCTGACCATATGGAATGATCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGC
ATACAATTCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTT
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 409740 -- 410239
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTG
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Found at i:409818 original size:28 final size:28
Alignment explanation
Indices: 409795--409914 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
409785 TGACAATTGT
409795 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
409823 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
409851 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
409879 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
409907 ATGCCATT
1 ATGCCATT
409915 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.03
28 84 0.93
29 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 409295 -- 409794
AAGCTCGCGACTATCCTCGCTTCGCAGCTCGCTCCTACAAGTCCACTTCGCTCGTACAAAGCACT
CGCAAAGCGTTAGGGACAACTTTGAATGGCATGAATTTCAGACCATTTCTGACCATATGGAATGA
TCTTCACAAAATGATATTGACTCTTTTGTCAGGGTCAGCGGCATACAATTCAATTTGTGATATGG
TCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 409915 -- 410414
TTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
Found at i:410048 original size:43 final size:43
Alignment explanation
Indices: 409987--410087 Score: 166
Period size: 43 Copynumber: 2.3 Consensus size: 43
409977 TGATTCTTCT
* * * *
409987 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
410030 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
410073 GGTCAAGACTGTCTT
1 GGTCAAGACTGTCTT
410088 GAAAGGTCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (43 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
Left flanking sequence: Indices 409487 -- 409986
TGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTT
CTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTT
TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 410088 -- 410587
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
Found at i:410058 original size:19 final size:19
Alignment explanation
Indices: 409988--410058 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
409978 GATTCTTCTG
*
409988 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
410007 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
410030 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
410050 GTCAGGACT
1 GTCAAGACT
410059 AACCTGACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 409488 -- 409987
GGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTC
TTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTT
TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 410059 -- 410558
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGA
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
Found at i:410094 original size:19 final size:19
Alignment explanation
Indices: 410070--410140 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
410060 ACCTGACCAA
410070 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
410089 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
410109 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
410127 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
410141 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 409570 -- 410069
ATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCC
TTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 410141 -- 410640
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
Found at i:410097 original size:43 final size:43
Alignment explanation
Indices: 409987--410101 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
409977 TGATTCTTCT
* * * * *
409987 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
*
410030 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
*
410073 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
410102 GATTCTTCTG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 4 0.06
43 61 0.94
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (43 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAA
Left flanking sequence: Indices 409487 -- 409986
TGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTT
CTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTT
TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 410102 -- 410601
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
Found at i:410281 original size:43 final size:42
Alignment explanation
Indices: 410218--410387 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
410208 TTGTATGTCA
* * * *
410218 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
410261 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
410299 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
410337 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
410380 TCAGGACT
1 TCAGGACT
410388 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 409718 -- 410217
ACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACT
CATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 410388 -- 410887
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAA
Found at i:410604 original size:43 final size:42
Alignment explanation
Indices: 410539--410708 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
410529 TTGTATGTCA
* * *
410539 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
410582 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
410620 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
410658 TCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
410701 TCAGGACT
1 TCAGGACT
410709 GATTCTTCTT
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 4 0.04
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 52 0.55
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 410039 -- 410538
TGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 410709 -- 411208
GATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTGA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCC
Found at i:410752 original size:19 final size:19
Alignment explanation
Indices: 410677--410757 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 19
410667 ACCTGACCAA
* *
410677 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTCTTTTG
*
410696 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCA--A--GACTCTT-TTG
*
410720 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTCTTTTG
*
410739 AAAGGTCAAGACTCATTTG
1 AAAGGTCAAGACTCTTTTG
410758 TATGTCATCA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
19 28 0.56
20 6 0.12
21 1 0.02
23 4 0.08
24 11 0.22
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTCTTTTG
Left flanking sequence: Indices 410177 -- 410676
ATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTGACCAA
Right flanking sequence: Indices 410758 -- 411257
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
Found at i:410830 original size:43 final size:42
Alignment explanation
Indices: 410765--411147 Score: 234
Period size: 43 Copynumber: 9.2 Consensus size: 42
410755 TTGTATGTCA
* * * *
410765 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
410808 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** *** *
410846 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
410889 TCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
410932 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * ***** * *
410973 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * *
411015 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
411054 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
411097 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
411140 TCAGGACT
1 TCAGGACT
411148 CATTCTTCTT
Statistics
Matches: 267, Mismatches: 53, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
37 4 0.01
38 42 0.16
39 12 0.04
40 1 0.00
41 36 0.13
42 13 0.05
43 152 0.57
44 7 0.03
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 410265 -- 410764
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
CAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 411148 -- 411647
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGC
TGACTATGACATTAATACCAAAAAAGGTCAGGATTCATGACAATGAGATGCCATTCACCATACCA
AGAAAGATGCCATTAGTGTCCAAAATCCATGTTGGTTGATGGTCAGCACTCATTTTGATGGTCAT
TGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCTTTCAGCATTCAAAGTTGCGAGTGCTTTGT
GGGCTTTGCTCGTGACACGCCATTGAAAGTTGCGAGTTTTGGGCTTTGCTAATCGAATCTCGTGA
CGTAGGGCCTCGGTTTCTAAAGAGCTAGGCTACTACGCCTAGCTC
Found at i:410845 original size:226 final size:227
Alignment explanation
Indices: 410451--410972 Score: 922
Period size: 226 Copynumber: 2.3 Consensus size: 227
410441 CCAAAAATGG
*
410451 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTT-ATTGAAA
410516 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
65 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
410581 GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC-T-GGTCAAG
130 GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTAGGTCAAG
*
410644 ACTGTCTTTCACAGTCAGGACTGACCTGACCAA
195 ACTGTCTTTCAAAGTCAGGACTGACCTGACCAA
*
410677 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT-TATTGAAA
410742 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
65 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
410807 GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTC
130 GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTT---AGGTC
410872 AAGACTGTCTTTCAAAGTCAGGACTGACCTGACCAA
192 AAGACTGTCTTTCAAAGTCAGGACTGACCTGACCAA
* * *
410908 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT-TATTGAAA
410973 TCAGTACTGA
Statistics
Matches: 283, Mismatches: 7, Indels: 7
0.95 0.02 0.02
Matches are distributed among these distances:
226 181 0.64
227 2 0.01
231 100 0.35
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (227 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTTATTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTGACCTGACCAA
Left flanking sequence: Indices 409951 -- 410450
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 410973 -- 411472
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGACATTAATACCA
AAAAAGGTCAGGATTCATGACAATGAGATGCCATTCACCATACCAAGAAAGATGCCATTAGTGTC
CAAAATCCATGTTGGTTGATGGTCAGCACTCATTTTGATGGTCAT
Found at i:410932 original size:19 final size:19
Alignment explanation
Indices: 410908--411147 Score: 94
Period size: 19 Copynumber: 11.7 Consensus size: 19
410898 ACCTGACCAA
410908 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
410927 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
410951 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
410970 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
410992 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
411011 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** *
411031 -CTGGTCAAGACTGTCTTTC
1 AAAGGTCAAGACTGTC-TTG
* ** *
411050 AAA-GTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACT-GTCTT----G
411073 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
411092 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
411116 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
411135 AAAGGTCAGGACT
1 AAAGGTCAAGACT
411148 CATTCTTCTT
Statistics
Matches: 168, Mismatches: 25, Indels: 56
0.67 0.10 0.22
Matches are distributed among these distances:
17 5 0.03
18 2 0.01
19 89 0.53
20 3 0.02
21 6 0.04
22 10 0.06
23 6 0.04
24 47 0.28
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 410408 -- 410907
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTGACCAA
Right flanking sequence: Indices 411148 -- 411647
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGC
TGACTATGACATTAATACCAAAAAAGGTCAGGATTCATGACAATGAGATGCCATTCACCATACCA
AGAAAGATGCCATTAGTGTCCAAAATCCATGTTGGTTGATGGTCAGCACTCATTTTGATGGTCAT
TGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCTTTCAGCATTCAAAGTTGCGAGTGCTTTGT
GGGCTTTGCTCGTGACACGCCATTGAAAGTTGCGAGTTTTGGGCTTTGCTAATCGAATCTCGTGA
CGTAGGGCCTCGGTTTCTAAAGAGCTAGGCTACTACGCCTAGCTC
Found at i:411116 original size:24 final size:24
Alignment explanation
Indices: 411087--411171 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
411077 GTCAAGACTG
411087 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
411111 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
411130 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
411154 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
411172 CATTATGGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 410587 -- 411086
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTGACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 411172 -- 411671
CATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGACATTAATACCAAAAA
AGGTCAGGATTCATGACAATGAGATGCCATTCACCATACCAAGAAAGATGCCATTAGTGTCCAAA
ATCCATGTTGGTTGATGGTCAGCACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGT
CTTCCTTGATCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTGACACGCCATT
GAAAGTTGCGAGTTTTGGGCTTTGCTAATCGAATCTCGTGACGTAGGGCCTCGGTTTCTAAAGAG
CTAGGCTACTACGCCTAGCTCCCTTCGCAATCCCGCCACCAGTTG
Found at i:411153 original size:43 final size:43
Alignment explanation
Indices: 410846--411171 Score: 336
Period size: 43 Copynumber: 7.7 Consensus size: 43
410836 GACTATCTGA
*
410846 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAA-G
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC-TTGAAAGG
* * ***
410889 TCAGGACTGA-CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCT-TCTTGAAAGGTCAAGACTGTCTTGAAAGG
*
410932 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* * * *
410973 TCAGTACTGACCTT-TT-TTGAAAGATCAAGACTATCTTGAAAGA
1 TCAGGACTGA--TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
*
411016 TCAGGACTGATTCTTC-T----GGTCAAGACTGTCTTTCAAA-G
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC-TTGAAAGG
** ***
411054 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
411097 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
* *
411140 TCAGGACTCATTCTTCTTGAAAGGTCAGGACT
1 TCAGGACTGATTCTTCTTGAAAGGTCAAGACT
411172 CATTATGGAA
Statistics
Matches: 234, Mismatches: 31, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
37 4 0.02
38 20 0.09
39 5 0.02
41 34 0.15
42 17 0.07
43 149 0.64
44 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 410346 -- 410845
ACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 411172 -- 411671
CATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGACATTAATACCAAAAA
AGGTCAGGATTCATGACAATGAGATGCCATTCACCATACCAAGAAAGATGCCATTAGTGTCCAAA
ATCCATGTTGGTTGATGGTCAGCACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGT
CTTCCTTGATCTTTCAGCATTCAAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTGACACGCCATT
GAAAGTTGCGAGTTTTGGGCTTTGCTAATCGAATCTCGTGACGTAGGGCCTCGGTTTCTAAAGAG
CTAGGCTACTACGCCTAGCTCCCTTCGCAATCCCGCCACCAGTTG
Found at i:411243 original size:28 final size:28
Alignment explanation
Indices: 411203--411323 Score: 226
Period size: 28 Copynumber: 4.3 Consensus size: 28
411193 ATTGCAATTC
411203 AATGCCATTAGTACTCACTTGAC-AACAA
1 AATGCCATTAGTACTCACTTGACAAAC-A
411231 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
411259 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
411287 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
411315 AATGCCATT
1 AATGCCATT
411324 TTCCATCAAA
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
28 89 0.97
29 3 0.03
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 410703 -- 411202
AGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTC
Right flanking sequence: Indices 411324 -- 411823
TTCCATCAAAAATTAGTGCTGACTATGACATTAATACCAAAAAAGGTCAGGATTCATGACAATGA
GATGCCATTCACCATACCAAGAAAGATGCCATTAGTGTCCAAAATCCATGTTGGTTGATGGTCAG
CACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCTTTCAGCATTC
AAAGTTGCGAGTGCTTTGTGGGCTTTGCTCGTGACACGCCATTGAAAGTTGCGAGTTTTGGGCTT
TGCTAATCGAATCTCGTGACGTAGGGCCTCGGTTTCTAAAGAGCTAGGCTACTACGCCTAGCTCC
CTTCGCAATCCCGCCACCAGTTGAAGGCCTTGGCCTCCCCCGCCTATCGGTCCGGTCGCGAAGGA
TTCCATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCA
CCGTGGTATGCGCCAATAAGACCACCAAAACCCTTTGTGGCACTA
Found at i:413953 original size:19 final size:19
Alignment explanation
Indices: 413929--413998 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
413919 CAATTGCAAT
413929 GAGTCCTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
*
413948 GAGTCCTGACCTTTCAAGA
1 GAGTCCTGACCTTTCAAAA
* *
413967 CAGTCTTGACCTTTCAAAA
1 GAGTCCTGACCTTTCAAAA
413986 GAGTCCTGACCTT
1 GAGTCCTGACCTT
413999 CCTGACTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
GAGTCCTGACCTTTCAAAA
Left flanking sequence: Indices 413429 -- 413928
TCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGA
TCAAACTCTTCTTTTGAGGTGGATTGGGCCTGCTAAAGGTAGAACCTGGTGAACCGGGCGTACTC
CTTCTCTGTCTTTGATGAGATCTTTCTTATTAGCTCACTCACTTTCGATTCACTTATGTGAACGT
ATAGAAAATTCACCAACCCAAGTGCGAATGGATAGAACGAAAAAAACGACTACAGGATGATTCGA
ACAAAGCACTCGCAACTTTGAATGGCGTGAGTTCAAAGCACACTCGCTTCGCTTTGGCTGATTCA
GACAAAACTCTTTGGTCAGGGTCCGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTG
AGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTG
AGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAAT
Right flanking sequence: Indices 413999 -- 414498
CCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTAAGTACTGATTTAAAGACAGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTT
TGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
Found at i:414045 original size:24 final size:24
Alignment explanation
Indices: 414013--414058 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
414003 ACTTTTCCAT
414013 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
414037 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
414059 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 413513 -- 414012
TGGATTGGGCCTGCTAAAGGTAGAACCTGGTGAACCGGGCGTACTCCTTCTCTGTCTTTGATGAG
ATCTTTCTTATTAGCTCACTCACTTTCGATTCACTTATGTGAACGTATAGAAAATTCACCAACCC
AAGTGCGAATGGATAGAACGAAAAAAACGACTACAGGATGATTCGAACAAAGCACTCGCAACTTT
GAATGGCGTGAGTTCAAAGCACACTCGCTTCGCTTTGGCTGATTCAGACAAAACTCTTTGGTCAG
GGTCCGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTG
ATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAT
Right flanking sequence: Indices 414059 -- 414558
CAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTAAAGACAGTCTTGAAAGGTCAGGACTCAT
TCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAG
Found at i:414289 original size:24 final size:22
Alignment explanation
Indices: 414270--414376 Score: 91
Period size: 19 Copynumber: 5.0 Consensus size: 22
414260 AGGACTGACC
414270 TTTTTTGAAAGGTCAAGACTG-
1 TTTTTTGAAAGGTCAAGACTGA
* *
414291 --TCTTGAAAGGTCAGGACTGA
1 TTTTTTGAAAGGTCAAGACTGA
*
414311 TTCTTCTGGAAAGGTCAAGACTG-
1 TT-TT-TTGAAAGGTCAAGACTGA
* *
414334 --TCTTGAAAGGTCAGGACTGA
1 TTTTTTGAAAGGTCAAGACTGA
414354 TTTTTCTTGAAAGGTCAAGACTG
1 -TTTT-TTGAAAGGTCAAGACTG
414377 TCTTGAAATC
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
19 32 0.48
20 1 0.02
23 2 0.03
24 31 0.47
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (22 bp):
TTTTTTGAAAGGTCAAGACTGA
Left flanking sequence: Indices 413770 -- 414269
CAGGGTCCGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATT
TTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTT
AAAGACAGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGGTCAA
GACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
Right flanking sequence: Indices 414377 -- 414876
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTG
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAG
GACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAG
ACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAG
TACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAACCAAT
GCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTA
Found at i:414304 original size:43 final size:42
Alignment explanation
Indices: 414188--414545 Score: 290
Period size: 43 Copynumber: 8.5 Consensus size: 42
414178 CAGTACTCAC
* * *
414188 CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
1 CTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
* * * *
414230 -TTCTTCT----GGTCAAGACTGTATTTCACA-GTCAGGACTGA
1 CTT-TTTTGAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGA
414268 CCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 -CTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
*
414311 -TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 CTT-TT-TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
* *
414354 TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA
1 CTTTT-TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
* *** * *
414395 CCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAA
1 -CTTTTTTGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGA
******
414438 CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 -CTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
* *
414481 -TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
1 CTT-TT-TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
*
414524 -TTCTTCTTGAAAGGTCAGGACT
1 CTT-TT-TTGAAAGGTCAAGACT
414546 CATTATGGAA
Statistics
Matches: 263, Mismatches: 35, Indels: 35
0.79 0.11 0.11
Matches are distributed among these distances:
38 20 0.08
39 7 0.03
40 2 0.01
41 30 0.11
42 22 0.08
43 180 0.68
44 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
CTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
Left flanking sequence: Indices 413688 -- 414187
AACAAAGCACTCGCAACTTTGAATGGCGTGAGTTCAAAGCACACTCGCTTCGCTTTGGCTGATTC
AGACAAAACTCTTTGGTCAGGGTCCGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGT
GAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGT
GAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAA
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAT
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTAAGTACTGATTTAAAGACAGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
Right flanking sequence: Indices 414546 -- 415045
CATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAA
ACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCC
ATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAG
AAAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTT
TTGGTATGGATAATGGCATACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTG
ACCTGAATCTGTTAAGTGACCTTCAGTCTCAAGAACCATGAAAGACAATTCCAATGACCATCCAT
TCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTG
Found at i:414431 original size:127 final size:127
Alignment explanation
Indices: 414195--414521 Score: 371
Period size: 127 Copynumber: 2.6 Consensus size: 127
414185 CACCTTTTTT
* * * * *
414195 GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T----GGTCAAGACTGTATTTCA
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT-CTTGA
* * *** * ** * **
414255 CAGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT-TCTG
65 -AATCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACT-AACCTGACCA
*
414319 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
*
414384 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTGACCA
66 ATCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTAACCTGACCA
* *
414446 AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAA
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
414511 AGGTCAGGACT
66 A--TCAGGACT
414522 CATTCTTCTT
Statistics
Matches: 172, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
124 37 0.22
125 1 0.01
126 3 0.02
127 104 0.60
128 8 0.05
129 19 0.11
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (127 bp):
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTAACCTGACCA
Left flanking sequence: Indices 413695 -- 414194
CACTCGCAACTTTGAATGGCGTGAGTTCAAAGCACACTCGCTTCGCTTTGGCTGATTCAGACAAA
ACTCTTTGGTCAGGGTCCGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTC
AGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACT
AATGGCATATGGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAA
GTACTGATTTAAAGACAGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTT
Right flanking sequence: Indices 414522 -- 415021
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTGGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGT
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAA
ACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCA
TTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCATACAATTCCAATTGATCCTTTGG
TCAGCACTTTGAACGATTTGTCTGACCTGAATCTGTTAAGTGACCTTCAGTCTCAAGAACCATGA
AAGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACT
Found at i:414546 original size:24 final size:24
Alignment explanation
Indices: 414461--414549 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
414451 GTCAAGACTG
*
414461 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
414485 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
414504 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
414528 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
414550 ATGGAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 1 0.02
23 1 0.02
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 413961 -- 414460
TCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTG
ATTTAAAGACAGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTGATTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 414550 -- 415049
ATGGAAAAGTCAGGAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAA
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAG
ATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGG
TATGGATAATGGCATACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCT
GAATCTGTTAAGTGACCTTCAGTCTCAAGAACCATGAAAGACAATTCCAATGACCATCCATTCCC
TTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGA
Found at i:414762 original size:28 final size:28
Alignment explanation
Indices: 414652--414752 Score: 193
Period size: 28 Copynumber: 3.6 Consensus size: 28
414642 TTGCAATTGT
414652 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
414680 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
414708 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
414736 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
414753 CATACCAACA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 414152 -- 414651
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGT
Right flanking sequence: Indices 414753 -- 415252
CATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATT
ATCCATCAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATA
ATGGCATACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCTGT
TAAGTGACCTTCAGTCTCAAGAACCATGAAAGACAATTCCAATGACCATCCATTCCCTTCTTTCA
GAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGCCCTCTTGT
GAAGAGGGCTTTGCTCGTGACGTGACGTGACGTGACATGACGTGACCGCTTTCCTTTTCTTCCAA
AAATCCATAAAGGCGGAGCTGTGGAGTCCAGTTCCGAAGGCCTTGTTAAGTCAAGTGGAAGTTCC
GAAGGCTCTCAAGTCGACGTGGAGCAGGCGTCACTTGCTTGACAG
Found at i:414802 original size:23 final size:24
Alignment explanation
Indices: 414775--414823 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
414765 AGTACTCACT
* *
414775 ATACCAA-ACAGATGCCATTTTCC
1 ATACCAAGAAAGATGCCATTATCC
414798 ATACCAAGAAAGATGCCATTATCC
1 ATACCAAGAAAGATGCCATTATCC
414822 AT
1 AT
414824 CAACCAATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (24 bp):
ATACCAAGAAAGATGCCATTATCC
Left flanking sequence: Indices 414275 -- 414774
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTGGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACT
Right flanking sequence: Indices 414824 -- 415323
CAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCA
TACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCTGTTAAGTG
ACCTTCAGTCTCAAGAACCATGAAAGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGC
ACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGCCCTCTTGTGAAGAG
GGCTTTGCTCGTGACGTGACGTGACGTGACATGACGTGACCGCTTTCCTTTTCTTCCAAAAATCC
ATAAAGGCGGAGCTGTGGAGTCCAGTTCCGAAGGCCTTGTTAAGTCAAGTGGAAGTTCCGAAGGC
TCTCAAGTCGACGTGGAGCAGGCGTCACTTGCTTGACAGACCTCCCAGCGCCAATGCGATTAGAG
CGCACGCAAGAGGCGTCTTCCCTCCGACTACGACGGGCGGCTTCA
Found at i:415103 original size:5 final size:5
Alignment explanation
Indices: 415093--415123 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
415083 GGGCTTTGCT
*
415093 CGTGA CGTGA CGTGA CGTGA CATGA CGTGA C
1 CGTGA CGTGA CGTGA CGTGA CGTGA CGTGA C
415124 CGCTTTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (5 bp):
CGTGA
Left flanking sequence: Indices 414593 -- 415092
CTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGAT
GCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAG
AGAAAGACAATTGCATTTTTGGTATGGATAATGGCATACAATTCCAATTGATCCTTTGGTCAGCA
CTTTGAACGATTTGTCTGACCTGAATCTGTTAAGTGACCTTCAGTCTCAAGAACCATGAAAGACA
ATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGAT
GAAGGTCACGTCAGAGCAAAGCCCTCTTGTGAAGAGGGCTTTGCT
Right flanking sequence: Indices 415124 -- 415623
CGCTTTCCTTTTCTTCCAAAAATCCATAAAGGCGGAGCTGTGGAGTCCAGTTCCGAAGGCCTTGT
TAAGTCAAGTGGAAGTTCCGAAGGCTCTCAAGTCGACGTGGAGCAGGCGTCACTTGCTTGACAGA
CCTCCCAGCGCCAATGCGATTAGAGCGCACGCAAGAGGCGTCTTCCCTCCGACTACGACGGGCGG
CTTCACATCCGATTTGACTAGCGGCCCATCGGTCGGTCGAGTCCTTACTCTACGATAACATTCAG
TGATCCCAGCCGACCGACCTCAGCGACCGGTTATAGGACCTTCGCGTCGTTTGCATCTTCGAACC
GCTAGTAGTGGACCTTCCAATGCGATTCCCTGCGTTCCTTCCACGCTCCTTTAGATGCGTCAATC
TAGCGCATTTAGACCAGTCCGAAGAAGCTCCAAGGACAAAATCTCTCACTACACTAAGATCAATC
AAGCCAGTCTGGTGAGCAAGATAGAAGGTTGGTAATTCCACTATC
Found at i:416223 original size:19 final size:19
Alignment explanation
Indices: 416153--416223 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
416143 TATCAAAAAG
* *
416153 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
416172 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
416195 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
416215 GTCAGGACT
1 GTCAAGACT
416224 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 415653 -- 416152
AAGCCATAGGAATGCTATGGCAAAGAAGAAATCGTACTCTGACCTTTGAGACGGAGATCGAGATA
GGTAGCGTAAATGAAGGCCTCACAGCAAGCTTTTCTTCGTTCTTCCAAACGAAGAGACCATCAAA
GCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTTAAGGGCTT
TTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAGCAAA
GCCCCCAGCGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCTTCTTG
TTCAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTG
TCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 416224 -- 416723
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGT
ACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACT
GTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
Found at i:416248 original size:86 final size:83
Alignment explanation
Indices: 416139--417068 Score: 351
Period size: 86 Copynumber: 11.0 Consensus size: 83
416129 ATTAGTACTC
* *
416139 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTCA-AGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
*
416204 TGTCTTTCAAAGTCAGGACTA
64 TGTC-TTGAAAGTCAGGACTA
* * * **
416225 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-GGAAAGGTCAAGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTT-CAA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAGA
416289 CTGTCTTGAAAGGTCAGGACTGA
63 CTGTCTTGAAA-GTCAGGACT-A
** *** ** ** * * **
416312 TTCTT-CTGGAAAGGTCAAGAC--TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
1 ACCTTACCAAAAAGGTCAAGACTGTCTTCAA-GTCAGGAC---TGA-CCTTA-TCA--AA--AAG
* * * * * *
416374 ATCAAGACTCAT-TTGTATGTCATCAGTACTC
56 GTCAAGACT-GTCTTGAAAG---TCAGGACTA
*
416405 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTCA-AGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
*
416470 TGTCTTTCAAAGTCAGGACTA
64 TGTC-TTGAAAGTCAGGACTA
* * * **
416491 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAAGGTCAAGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTT-CAA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAGA
*
416555 CTGTCTTGAAAGGTCAGGACTG
63 CTGTCTTGAAA-GTCAGGACTA
** * *** * * * * *** * *
416577 ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTCAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
416642 TCTTGAAAGATCAGGACTGA
66 TCTTGAAAG-TCAGGACT-A
** * * * *
416662 TTCTT--C----TGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTCAA-GTCAGGACTGACCTTATCAAAAAGGTCAAGAC
416721 TGTCTTGAAAGGTCAGGACTGA
64 TGTCTTGAAA-GTCAGGACT-A
** *** * * * ** *
416743 TTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAAGGTCAGGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTT-CAA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAGA
*
416806 CTCAT-TATGGAAAAGTCAGG---A
63 CT-GTCT-T-G-AAAGTCAGGACTA
** * * ** * * *
416827 A-GGT--C-AAGA-CTC-A-TTTGTATGTC-A-TCAGTACTCACCTTATCAAAAAGGTCAAGACT
1 ACCTTACCAAAAAGGTCAAGACTGTCT-TCAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
*
416883 GTCTTTCAAAGTCAGGACTA
65 GTC-TTGAAAGTCAGGACTA
* * * * * *
416903 ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGA--TTCTTC----TGGTCAATA
1 ACCTTACCAAAAAGGTCAAGACTGTCTT-CAAG-TCAGGACTGACCTT-ATCAAAAAGGTCAAGA
* * * *
416962 CTGTATTTCACAGTCAGGACTG
63 CTGT-CTTGAAAGTCAGGACTA
* * *
416984 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTC-AAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
417049 TGTCTTGAAAGGTCAGGACT
64 TGTCTTGAAA-GTCAGGACT
417069 TTTGATGGAA
Statistics
Matches: 620, Mismatches: 149, Indels: 150
0.67 0.16 0.16
Matches are distributed among these distances:
73 9 0.01
74 5 0.01
75 21 0.03
76 3 0.00
77 2 0.00
78 4 0.01
79 14 0.02
80 9 0.01
81 109 0.18
82 9 0.01
83 23 0.04
84 46 0.07
85 29 0.05
86 235 0.38
87 19 0.03
88 16 0.03
89 7 0.01
90 3 0.00
91 1 0.00
92 15 0.02
93 6 0.01
94 22 0.04
96 2 0.00
97 10 0.02
98 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (83 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTCAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTG
TCTTGAAAGTCAGGACTA
Left flanking sequence: Indices 415639 -- 416138
GTACAGGGTTGGCAAAGCCATAGGAATGCTATGGCAAAGAAGAAATCGTACTCTGACCTTTGAGA
CGGAGATCGAGATAGGTAGCGTAAATGAAGGCCTCACAGCAAGCTTTTCTTCGTTCTTCCAAACG
AAGAGACCATCAAAGCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCT
TCGCTTAAGGGCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCA
ACGTCACGAGCAAAGCCCCCAGCGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGT
GCAAAGCCTTCTTGTTCAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGT
ATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 417069 -- 417568
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAC
Found at i:416259 original size:19 final size:19
Alignment explanation
Indices: 416235--416349 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
416225 ACCTTACCAA
416235 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416254 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
416278 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416297 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
416321 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
416337 AAAGGTCAGGACT
1 AAAGGTCAAGACT
416350 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 12 0.15
17 1 0.01
19 27 0.34
20 3 0.04
21 5 0.06
22 4 0.05
23 2 0.03
24 26 0.32
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 415735 -- 416234
CCTCACAGCAAGCTTTTCTTCGTTCTTCCAAACGAAGAGACCATCAAAGCACTCGCAAAGCGAAG
CAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTTAAGGGCTTTTTTAGTCAATCATGCA
TGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCACGTC
ACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCTTCTTGTTCAGCTTTTTGTCAGA
GTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACC
TGAATCAGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 416350 -- 416849
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGG
ACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTC
Found at i:416280 original size:24 final size:24
Alignment explanation
Indices: 416235--416333 Score: 110
Period size: 19 Copynumber: 4.5 Consensus size: 24
416225 ACCTTACCAA
416235 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
416254 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
416278 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
416297 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
416321 AAAGGTCAAGACT
1 AAAGGTCAAGACT
416334 CTGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 2 0.03
24 27 0.41
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (24 bp):
AAAGGTCAAGACTGATTCTTCTGG
Left flanking sequence: Indices 415735 -- 416234
CCTCACAGCAAGCTTTTCTTCGTTCTTCCAAACGAAGAGACCATCAAAGCACTCGCAAAGCGAAG
CAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTTAAGGGCTTTTTTAGTCAATCATGCA
TGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCACGTC
ACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCTTCTTGTTCAGCTTTTTGTCAGA
GTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACC
TGAATCAGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 416334 -- 416833
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAA
Found at i:416446 original size:19 final size:19
Alignment explanation
Indices: 416419--416489 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
416409 TATCAAAAAG
*
416419 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
416438 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
416461 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
416481 GTCAGGACT
1 GTCAAGACT
416490 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 415919 -- 416418
AGCGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCTTCTTGTTCAGC
TTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGA
TTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 416490 -- 416989
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATG
GAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACT
GATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTA
Found at i:416525 original size:19 final size:19
Alignment explanation
Indices: 416501--416784 Score: 126
Period size: 19 Copynumber: 13.7 Consensus size: 19
416491 ACCTTACCAA
416501 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416520 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
416544 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416563 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
416587 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
416606 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
416628 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
416647 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * * *
416667 -CTGGTCAATACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
416685 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
416709 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416728 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
416752 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
416771 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
416785 ATTCTTCTTG
Statistics
Matches: 204, Mismatches: 30, Indels: 62
0.69 0.10 0.21
Matches are distributed among these distances:
17 6 0.03
19 102 0.50
20 5 0.02
21 9 0.04
22 13 0.06
23 4 0.02
24 65 0.32
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 416001 -- 416500
ACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATC
AGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 416785 -- 417284
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTC
Found at i:416594 original size:266 final size:266
Alignment explanation
Indices: 416120--416599 Score: 906
Period size: 266 Copynumber: 1.8 Consensus size: 266
416110 CCAATTGCAA
*
416120 TTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
1 TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
416185 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
416250 CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
131 CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
416315 TTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
196 TTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
416380 ACTCAT
261 ACTCAT
* *
416386 TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
1 TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
416451 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
66 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
* *
416516 CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
131 CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
*
416581 TTCTTGAAAGGTCAAGACT
196 TTCTGGAAAGGTCAAGACT
416600 GTCTTGAAAT
Statistics
Matches: 208, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
266 208 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (266 bp):
TTGTATGCCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCAT
Left flanking sequence: Indices 415620 -- 416119
TATCTCTCGATAACAGGAAGTACAGGGTTGGCAAAGCCATAGGAATGCTATGGCAAAGAAGAAAT
CGTACTCTGACCTTTGAGACGGAGATCGAGATAGGTAGCGTAAATGAAGGCCTCACAGCAAGCTT
TTCTTCGTTCTTCCAAACGAAGAGACCATCAAAGCACTCGCAAAGCGAAGCAAGCTTTGCGAGTG
CTTTGTCACTCGCAAAGCTTCGCTTAAGGGCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAA
AGCTTTTTGAAAGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCACGTCACGAGCAAAGCCCTA
CGCTTTGCGAGTGCTTTGTGCAAAGCCTTCTTGTTCAGCTTTTTGTCAGAGTCAGCACTAATGGC
ATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTT
ATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
Right flanking sequence: Indices 416600 -- 417099
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
Found at i:416786 original size:43 final size:43
Alignment explanation
Indices: 416149--416807 Score: 430
Period size: 43 Copynumber: 15.3 Consensus size: 43
416139 ACCTTATCAA
* * * * * *
416149 AAAGGTCAAGACTGTATTTCACA-GTCAGGACTGA-CCTTATCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTTCT-AG
* ** * *
416192 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTAG
*
416235 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
*
416278 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
** *
416321 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAGAATGATT-GAGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---T--G-ATTCTTCTA-G
** * * * * * * * * *
416367 AATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTCA-CCTTATCAA
1 AA--A-GGTCAAGACT-GTCTTGAAAG--GTCAGGACTGATTCTTCT-AG
* * * * *
416415 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTTCT-AG
* ** * *
416458 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTAG
*
416501 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* *
416544 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* *
416587 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTAG
* * *
416628 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT--
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* * ** * * *
416669 ---GGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTAG
*
416709 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
*
416752 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
*
416795 AAAGGTCAGGACT
1 AAAGGTCAAGACT
416808 CATTATGGAA
Statistics
Matches: 506, Mismatches: 68, Indels: 84
0.77 0.10 0.13
Matches are distributed among these distances:
37 3 0.01
38 25 0.05
40 14 0.03
41 36 0.07
42 16 0.03
43 355 0.70
44 12 0.02
45 9 0.02
46 10 0.02
47 2 0.00
48 4 0.01
49 8 0.02
51 1 0.00
52 5 0.01
54 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
Left flanking sequence: Indices 415649 -- 416148
GGCAAAGCCATAGGAATGCTATGGCAAAGAAGAAATCGTACTCTGACCTTTGAGACGGAGATCGA
GATAGGTAGCGTAAATGAAGGCCTCACAGCAAGCTTTTCTTCGTTCTTCCAAACGAAGAGACCAT
CAAAGCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTTAAGG
GCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAG
CAAAGCCCCCAGCGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCTT
CTTGTTCAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCA
CTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAA
Right flanking sequence: Indices 416808 -- 417307
CATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
AAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
Found at i:416915 original size:43 final size:43
Alignment explanation
Indices: 416851--417068 Score: 218
Period size: 43 Copynumber: 5.2 Consensus size: 43
416841 TTGTATGTCA
* * *
416851 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
416894 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * * * *
416936 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
416975 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
417018 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
417061 TCAGGACT
1 TCAGGACT
417069 TTTGATGGAA
Statistics
Matches: 140, Mismatches: 25, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
37 3 0.02
38 17 0.12
39 6 0.04
42 12 0.09
43 98 0.70
44 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 416351 -- 416850
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAT
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGA
CTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 417069 -- 417568
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAC
Found at i:417006 original size:24 final size:24
Alignment explanation
Indices: 416974--417050 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
416964 GTATTTCACA
*
416974 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
416998 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
417017 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
417041 GTCAAGACTG
1 GTCAAGACTG
417051 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 416474 -- 416973
TTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 417051 -- 417550
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAATTGTA
Found at i:417022 original size:81 final size:81
Alignment explanation
Indices: 416873--417025 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
416863 TTATCAAAAA
* *
416873 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTCAAAGAT
416938 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * * *
416954 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG-
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTCAAAGA
417018 TCAGGACT
65 TCAGGACT
417026 AACCTTACCA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 57 0.90
82 6 0.10
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTCAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 416373 -- 416872
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 417026 -- 417525
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
Done.