Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 12 of 20
Found at i:357971 original size:16 final size:16
Alignment explanation
Indices: 357950--357980 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
357940 AGGACCCTTT
357950 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
357966 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
357981 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 357450 -- 357949
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCC
ATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
ACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 357981 -- 358480
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
Found at i:358049 original size:43 final size:43
Alignment explanation
Indices: 358001--358082 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
357991 ATTGAGGAAA
* * *
358001 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
*
358044 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
358083 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 357501 -- 358000
AAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGAC
TCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTG
CTCCCAATGGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 358083 -- 358582
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
Found at i:358175 original size:28 final size:28
Alignment explanation
Indices: 358152--358271 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
358142 TGACAATTGT
358152 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
358180 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
358208 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
358236 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
358264 ATGCCATT
1 ATGCCATT
358272 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 357652 -- 358151
ACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGAT
GAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 358272 -- 358771
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Found at i:358354 original size:43 final size:43
Alignment explanation
Indices: 358293--358420 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 43
358283 ATGAGTACTC
* * *
358293 ACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
358336 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * * *
358379 ACCTGACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
358421 GATTCTTCTT
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
42 5 0.07
43 71 0.93
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 357793 -- 358292
AGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTC
ACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 358421 -- 358920
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
Found at i:358358 original size:24 final size:24
Alignment explanation
Indices: 358326--358402 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
358316 GTATTTCACA
*
358326 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
358350 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
358369 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
358393 GTCAAGACTG
1 GTCAAGACTG
358403 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 357826 -- 358325
CTCCCAATGGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAA
CAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 358403 -- 358902
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
Found at i:358413 original size:19 final size:19
Alignment explanation
Indices: 358389--358464 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
358379 ACCTGACCAA
358389 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
358408 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
358432 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
358451 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
358465 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 357889 -- 358388
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 358465 -- 358964
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
Found at i:358605 original size:43 final size:42
Alignment explanation
Indices: 358542--358711 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
358532 TTGTATGTCA
* * * *
358542 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
358585 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
358623 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
358661 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
358704 TCAGGACT
1 TCAGGACT
358712 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 358042 -- 358541
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCA
AAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 358712 -- 359211
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
TTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
Found at i:358944 original size:113 final size:116
Alignment explanation
Indices: 358699--358944 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
358689 GACTGTCTTG
*
358699 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
358763 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
358818 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
358882 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
358931 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
358945 TCTTGAAAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 358199 -- 358698
GACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 358945 -- 359444
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGAC
Found at i:358958 original size:43 final size:43
Alignment explanation
Indices: 358878--359002 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
358868 ATTAGTACTC
* * *
358878 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
358921 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
358964 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
359003 AATGAGAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.05
43 49 0.67
44 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 358378 -- 358877
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 359003 -- 359502
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
Found at i:358993 original size:16 final size:16
Alignment explanation
Indices: 358972--359002 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
358962 TGATTCTTCT
358972 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
358988 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
359003 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 358472 -- 358971
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 359003 -- 359502
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
Found at i:359116 original size:64 final size:64
Alignment explanation
Indices: 359045--359179 Score: 200
Period size: 64 Copynumber: 2.1 Consensus size: 64
359035 CCTTACCATA
* *
359045 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGT-TTTGAAAGGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAA-GT
* * *
359109 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAGT
*
359173 CAGGACT
1 CAAGACT
359180 AACCTTACCA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 58 0.91
65 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAGT
Left flanking sequence: Indices 358545 -- 359044
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATA
Right flanking sequence: Indices 359180 -- 359679
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGT
CAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTC
AGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAA
ATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTG
CAATTCAATGCCATTAGTGCTCACCATACCAACATGAGTACTCAC
Found at i:359194 original size:43 final size:42
Alignment explanation
Indices: 359129--359298 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
359119 TTGTATGTCA
* * *
359129 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
359172 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
359210 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
359248 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
359291 TCAGGACT
1 TCAGGACT
359299 CATTCTTCTT
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 358629 -- 359128
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 359299 -- 359798
CATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCAT
ACCAAACAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
CCAAACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTG
AGGACTAATTGCAATTCAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAA
AAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAACCAATTTGGATGGAT
TTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGG
Found at i:359375 original size:59 final size:60
Alignment explanation
Indices: 359312--359445 Score: 207
Period size: 64 Copynumber: 2.2 Consensus size: 60
359302 TCTTCTTGAA
**
359312 AGGTCAGGACTTT-CCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
1 AGGTCAGGACTTTAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
359371 AGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
1 AGGTCAGGA--C-TTT-AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
359435 AGGTCAGGACT
1 AGGTCAGGACT
359446 CATTGCAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
59 9 0.13
61 2 0.03
62 4 0.06
64 53 0.78
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (60 bp):
AGGTCAGGACTTTAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
Left flanking sequence: Indices 358812 -- 359311
TTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
Right flanking sequence: Indices 359446 -- 359945
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTC
AATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCAT
ACCAAGAAAGATGCCATTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGA
CATTTGTTTGTACAGTGAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCA
CAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTG
Found at i:359406 original size:64 final size:64
Alignment explanation
Indices: 359327--359446 Score: 240
Period size: 64 Copynumber: 1.9 Consensus size: 64
359317 AGGACTTTCC
359327 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAA
1 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAA
359391 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTC
1 GGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTC
359447 ATTGCAATTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (64 bp):
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAA
Left flanking sequence: Indices 358827 -- 359326
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCC
Right flanking sequence: Indices 359447 -- 359946
ATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTCA
ATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATA
CCAAGAAAGATGCCATTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGAC
ATTTGTTTGTACAGTGAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCAC
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Found at i:359489 original size:28 final size:28
Alignment explanation
Indices: 359457--359586 Score: 219
Period size: 28 Copynumber: 4.6 Consensus size: 28
359447 ATTGCAATTC
359457 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
359485 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
359513 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
359541 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
*
359569 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
359587 CATACCAACA
Statistics
Matches: 98, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
27 1 0.01
28 95 0.97
29 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTGTACAAACA
Left flanking sequence: Indices 358957 -- 359456
AGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 359587 -- 360086
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGA
TGCCATTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGT
ACAGTGAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTGTTTGGTATGGACAT
ACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATA
CAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCA
Found at i:359527 original size:56 final size:56
Alignment explanation
Indices: 359457--359586 Score: 251
Period size: 56 Copynumber: 2.3 Consensus size: 56
359447 ATTGCAATTC
359457 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
359513 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
*
359569 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
359587 CATACCAACA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (56 bp):
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
Left flanking sequence: Indices 358957 -- 359456
AGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 359587 -- 360086
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGA
TGCCATTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGT
ACAGTGAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTGTTTGGTATGGACAT
ACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATA
CAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCA
Found at i:359796 original size:28 final size:28
Alignment explanation
Indices: 359764--359939 Score: 265
Period size: 28 Copynumber: 6.4 Consensus size: 28
359754 TTTGGTATGG
*
359764 CTAATGACATTTGTTTGT-ACAGTGAGTA
1 CTAATGGCATTTGTTTGTCA-AGTGAGTA
*
359792 CTAATGGCATATG---GTCAAGTGAGTA
1 CTAATGGCATTTGTTTGTCAAGTGAGTA
359817 CTAATGGCATTTGTTTG-CACAGTGAGTA
1 CTAATGGCATTTGTTTGTCA-AGTGAGTA
359845 CTAATGGCATTTGTTTGT-ACAGTGAGTA
1 CTAATGGCATTTGTTTGTCA-AGTGAGTA
359873 CTAATGGCATTTGTTTGTCAAGTGAGTA
1 CTAATGGCATTTGTTTGTCAAGTGAGTA
359901 CTAATGGCATTTGTTTGTCAAGTGAGTA
1 CTAATGGCATTTGTTTGTCAAGTGAGTA
359929 CTAATGGCATT
1 CTAATGGCATT
359940 GAATTGCAAT
Statistics
Matches: 138, Mismatches: 3, Indels: 14
0.89 0.02 0.09
Matches are distributed among these distances:
25 22 0.16
26 1 0.01
27 2 0.01
28 112 0.81
29 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (28 bp):
CTAATGGCATTTGTTTGTCAAGTGAGTA
Left flanking sequence: Indices 359264 -- 359763
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCTTTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAGTG
CTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATG
CCATTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGG
Right flanking sequence: Indices 359940 -- 360439
GAATTGCAATGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGAG
TCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTCA
CCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
Found at i:360161 original size:43 final size:43
Alignment explanation
Indices: 360114--360285 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
360104 TCAAGAAGAA
*
360114 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
360157 TCAGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
360195 TCAGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
360233 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
360276 TGAGTACTGA
1 TCAGTCCTGA
360286 TGACATACAA
Statistics
Matches: 99, Mismatches: 17, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 4 0.04
43 55 0.56
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 359614 -- 360113
AAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAGTGCTCACCATACCAACATGAGTACTCA
CTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAACCAAT
TTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGTCA
AGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TGAATTGCAATGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGTAAGGTGA
GTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTC
ACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 360286 -- 360785
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTG
ACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTC
AGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCA
ATTTGGATGGATTTTGGTATGGTCAGCACTAATGACATACAATTCTCATTAGTCCTGACCTTTCC
ATAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGAC
Found at i:360239 original size:76 final size:78
Alignment explanation
Indices: 360107--360263 Score: 237
Period size: 76 Copynumber: 2.0 Consensus size: 78
360097 TGACCTTTCA
360107 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
*
360172 AAATACAGTCTTGACC
63 AAAGACAGTCTTGACC
* * *
360188 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
360251 GACAGTCTTGACC
66 GACAGTCTTGACC
360264 TTTTTGATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 53 0.74
77 2 0.03
81 17 0.24
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACC
Left flanking sequence: Indices 359607 -- 360106
CCATACCAAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAGTGCTCACCATACCAACATGA
GTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATC
AACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCAT
ATGGTCAAGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTGAATTGCAATGAGTCCTGACCTGTTTGGTATGGACATACAAATGAGTCTTGTATGGT
AAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAA
AGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCA
Right flanking sequence: Indices 360264 -- 360763
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGAC
CGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATG
AGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTAATGACATACAAT
TCTCATTAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAG
Found at i:360389 original size:43 final size:42
Alignment explanation
Indices: 360342--360511 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
360332 AAGAAGAATG
*
360342 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
360385 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * * *
360423 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
360461 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
360504 AGTACTGA
1 AGTCCTGA
360512 TGACATACAA
Statistics
Matches: 93, Mismatches: 21, Indels: 26
0.66 0.15 0.19
Matches are distributed among these distances:
33 11 0.12
37 3 0.03
38 21 0.23
39 2 0.02
41 1 0.01
42 2 0.02
43 53 0.57
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 359842 -- 360341
GTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTGTTTGGTATG
GACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 360512 -- 361011
TGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAGAA
ATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCA
CAAATTGCAATGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTA
ATGACATACAATTCTCATTAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCC
TGAAAAGTGCTGACCATATCACAAATGGCAATTGTATGCCATTAGTGTTTACCATAACAAAAAAG
GAATTGATAGAGGTTGGATCAATAGCAATAGTTCAGATAGCCACGAATGGGATTGATGCATAGGC
TGCAAGGAAGGGAATGCGCAATTAGGACCAATAGGCTTCGACGAATGCCTTTCTTTCGAGAAGAT
GCTTTGAAGGAGAAGGCAAGCAACTGGCATAGTTCATGTACGAGG
Found at i:360486 original size:226 final size:226
Alignment explanation
Indices: 360092--360534 Score: 859
Period size: 226 Copynumber: 2.0 Consensus size: 226
360082 TTCCATAATG
360092 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
360157 TCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
66 TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
360222 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
131 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
360287 GACATACAAATGAGTCTTGACCTTTCAATCA
196 GACATACAAATGAGTCTTGACCTTTCAATCA
*
360318 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
360383 TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
66 TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
*
360448 TTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
131 TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
360513 GACATACAAATGAGTCTTGACC
196 GACATACAAATGAGTCTTGACC
360535 GGAAAGTCCT
Statistics
Matches: 214, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
226 214 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (226 bp):
AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAATCA
Left flanking sequence: Indices 359592 -- 360091
CAACATGAGTACTCACCATACCAAAACAGGTGAGGACTAATTGCAATTCAATGCCATTAGTGCTC
ACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACCAAGAAAGATGCCA
TTCATGCTGACCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGT
GAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTGTTTGGTATGGACATACAAA
TGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCGGAAAGTCCTCACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 360535 -- 361034
GGAAAGTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCAC
TGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTA
TCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTAATGACATACAATTCTCATTAGTC
CTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCATATCACA
AATGGCAATTGTATGCCATTAGTGTTTACCATAACAAAAAAGGAATTGATAGAGGTTGGATCAAT
AGCAATAGTTCAGATAGCCACGAATGGGATTGATGCATAGGCTGCAAGGAAGGGAATGCGCAATT
AGGACCAATAGGCTTCGACGAATGCCTTTCTTTCGAGAAGATGCTTTGAAGGAGAAGGCAAGCAA
CTGGCATAGTTCATGTACGAGGGATCCTATTAGAATGAAGCAGGA
Found at i:367620 original size:28 final size:28
Alignment explanation
Indices: 367579--367633 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
367569 TGAGTACTCA
*
367579 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTGGTACAGTGAGTACTAATGGCATT
*
367607 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTGGTACAGTGAGTACTAATGGCAT
367634 ACAATTGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.38
Consensus pattern (28 bp):
TGTTGGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 367079 -- 367578
CTCTACCATTAAGCTATTTCCGCCTAGCTCGTGCTGCAAACTCGCTCGCTTCGTCAAGCTCTTTA
CGAAAAGTGTCGTCTACACTATACGCTCGTTGTTTCAGTTGACTCCGCGATCAAACGAGCAAAGC
ACTCGCAACTTTGAATTGAATGGCATTAGTGCCTACCATCAGCTTTGAATGCTTCGCTTTGGCTT
TCAAAGCACTCCTTTCAATCTGATCTTGAAGGTCATGTCACGTCAGAACAAAGCCTTCTTTTTCA
TCTCAAAAATGAGTGAACTCGCAACTTTCAATGGCGTCAGGGCAAAGCACACTCGCAAAGCGTAG
GGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTG
TCATTGATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 367634 -- 368133
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
Found at i:367795 original size:95 final size:98
Alignment explanation
Indices: 367617--367796 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
367607 TGTTTGTACA
* *
367617 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
367682 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
367716 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
367777 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
367797 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 367117 -- 367616
AACTCGCTCGCTTCGTCAAGCTCTTTACGAAAAGTGTCGTCTACACTATACGCTCGTTGTTTCAG
TTGACTCCGCGATCAAACGAGCAAAGCACTCGCAACTTTGAATTGAATGGCATTAGTGCCTACCA
TCAGCTTTGAATGCTTCGCTTTGGCTTTCAAAGCACTCCTTTCAATCTGATCTTGAAGGTCATGT
CACGTCAGAACAAAGCCTTCTTTTTCATCTCAAAAATGAGTGAACTCGCAACTTTCAATGGCGTC
AGGGCAAAGCACACTCGCAAAGCGTAGGGCTGATTCAGACTCACTCTGATAGACTATCAGACAAG
AAGGGAACTCATATTGATGGACAATTGTCATTGATCTTCATTCTTTTCACTAATGGCATACAATT
TGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGA
GTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 367797 -- 368296
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Found at i:367826 original size:43 final size:43
Alignment explanation
Indices: 367779--367977 Score: 195
Period size: 43 Copynumber: 4.9 Consensus size: 43
367769 CTGACCTTTC
* *
367779 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
367822 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
367865 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
367898 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
367941 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
367978 TGACATACAA
Statistics
Matches: 124, Mismatches: 20, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.02
38 20 0.16
39 3 0.02
41 1 0.01
43 85 0.69
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 367279 -- 367778
GCACTCCTTTCAATCTGATCTTGAAGGTCATGTCACGTCAGAACAAAGCCTTCTTTTTCATCTCA
AAAATGAGTGAACTCGCAACTTTCAATGGCGTCAGGGCAAAGCACACTCGCAAAGCGTAGGGCTG
ATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCATT
GATCTTCATTCTTTTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATT
GGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 367978 -- 368477
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAA
Found at i:367835 original size:19 final size:19
Alignment explanation
Indices: 367808--367878 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
367798 TGGTCAGGTT
367808 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
367827 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
367851 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
367870 AGTCTTGAC
1 AGTCCTGAC
367879 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 367308 -- 367807
ATGTCACGTCAGAACAAAGCCTTCTTTTTCATCTCAAAAATGAGTGAACTCGCAACTTTCAATGG
CGTCAGGGCAAAGCACACTCGCAAAGCGTAGGGCTGATTCAGACTCACTCTGATAGACTATCAGA
CAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTTCATTCTTTTCACTAATGGCATAC
AATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATG
GTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 367879 -- 368378
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGA
CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTAAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTG
AGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGT
Found at i:368018 original size:19 final size:19
Alignment explanation
Indices: 367991--368140 Score: 81
Period size: 24 Copynumber: 7.2 Consensus size: 19
367981 CATACAAATG
*
367991 AGTCTTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
368010 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
368034 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* *
368053 AGTCTTGACCTTTTTGGTAAGGTA-
1 AGTCCTGACC--TTT--CAA-G-AC
*
368077 AGTACTGA--TTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
368094 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
368118 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
368137 AGTC
1 AGTC
368141 TTGATCTTTT
Statistics
Matches: 101, Mismatches: 11, Indels: 38
0.67 0.07 0.25
Matches are distributed among these distances:
16 1 0.01
17 7 0.07
18 2 0.02
19 30 0.30
20 6 0.06
21 9 0.09
22 6 0.06
23 5 0.05
24 34 0.34
25 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 367491 -- 367990
CTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCAT
TGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 368141 -- 368640
TTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAG
TACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAA
GTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAG
TTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCT
Found at i:368043 original size:43 final size:43
Alignment explanation
Indices: 367987--368149 Score: 197
Period size: 43 Copynumber: 3.8 Consensus size: 43
367977 ATGACATACA
* *
367987 AATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
368030 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * *
368074 -GTAAGTACTGA--TTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
368114 AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
368150 TTGGTAAGGT
Statistics
Matches: 101, Mismatches: 15, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
40 3 0.03
41 31 0.31
43 64 0.63
44 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 367487 -- 367986
TTCACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATG
GCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 368150 -- 368649
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
Found at i:368142 original size:84 final size:85
Alignment explanation
Indices: 367991--368268 Score: 335
Period size: 84 Copynumber: 3.4 Consensus size: 85
367981 CATACAAATG
* * * * *
367991 AGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
*
368056 CTTGACCTTTTTGGTAAGGTA
65 CTTGATCTTTTTGGTAAGGTA
* *
368077 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
*
368141 TTGATCTTTTTGGTAAGGTC
66 TTGATCTTTTTGGTAAGGTA
* *
368161 AGTCCTGACTGTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA----TC-AGATAGT
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
* *
368216 CTTGATCTTTTTGGTCAGGTT
65 CTTGATCTTTTTGGTAAGGTA
368237 AGTCCTGACTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTT
368269 TTGATAAGGT
Statistics
Matches: 170, Mismatches: 14, Indels: 21
0.83 0.07 0.10
Matches are distributed among these distances:
75 1 0.01
76 49 0.29
77 2 0.01
81 19 0.11
84 78 0.46
85 1 0.01
86 20 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (85 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGATCTTTTTGGTAAGGTA
Left flanking sequence: Indices 367491 -- 367990
CTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCAT
TGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 368269 -- 368768
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTG
AGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGA
AGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATTTGTGTG
Found at i:368149 original size:19 final size:19
Alignment explanation
Indices: 367991--368149 Score: 83
Period size: 19 Copynumber: 7.7 Consensus size: 19
367981 CATACAAATG
367991 AGTCTTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
* *
368010 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCTTGACCTTTC---AAG-A-C
*
368034 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
368053 AGTCTTGACCTTTTTGGTAAGGTA-
1 AGTCTTGACC--TTT--CAA-G-AC
368077 AGTAC-TGA--TTTCAAGAC
1 AGT-CTTGACCTTTCAAGAC
368094 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAG-A-C
*
368118 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
368137 AGTCTTGATCTTT
1 AGTCTTGACCTTT
368150 TTGGTAAGGT
Statistics
Matches: 110, Mismatches: 9, Indels: 42
0.68 0.06 0.26
Matches are distributed among these distances:
16 2 0.02
17 7 0.06
18 2 0.02
19 37 0.34
20 6 0.05
21 9 0.08
22 6 0.05
23 5 0.05
24 34 0.31
25 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 367491 -- 367990
CTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCAT
TGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 368150 -- 368649
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
Found at i:368163 original size:43 final size:42
Alignment explanation
Indices: 368034--368287 Score: 199
Period size: 43 Copynumber: 6.2 Consensus size: 42
368024 AAGAAGAATG
*
368034 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTA
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** *
368077 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
368118 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
368161 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
368199 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
368237 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
368280 AGTACTGA
1 AGTCCTGA
368288 TGACATACAA
Statistics
Matches: 162, Mismatches: 32, Indels: 34
0.71 0.14 0.15
Matches are distributed among these distances:
33 12 0.07
37 3 0.02
38 21 0.13
39 2 0.01
40 3 0.02
41 32 0.20
42 2 0.01
43 84 0.52
44 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 367534 -- 368033
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTA
ATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 368288 -- 368787
TGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGA
AAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
ATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGAC
AGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAA
AGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTC
CTGACCTTTTCCTTTCCATTTGTGTGAACACTAATGGCATTGGTT
Found at i:368397 original size:28 final size:29
Alignment explanation
Indices: 368354--368473 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
368344 GTTGATGGAA
368354 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
368382 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
368410 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
368438 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
368466 AATGGCAT
1 AATGGCAT
368474 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 367854 -- 368353
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTCCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 368474 -- 368973
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATTTGTGTGAACACTAATGGCATTGGTTGATGGTCAGCA
CTCATTTTGATGGAAAATGGCATCTAATTGCAATTGATCCTTTCCTTTATCAAGAATTGCAACCT
TTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACGATTTGTCTGACCTTATGGAAAGGTTATG
GAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGT
Found at i:368591 original size:43 final size:43
Alignment explanation
Indices: 368543--368624 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
368533 CTGATCTTTC
* * * *
368543 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
368586 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
368625 TTTCCTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 368043 -- 368542
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 368625 -- 369124
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCC
TTTCCATTTGTGTGAACACTAATGGCATTGGTTGATGGTCAGCACTCATTTTGATGGAAAATGGC
ATCTAATTGCAATTGATCCTTTCCTTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTC
AGAAGCACTTTGAACGATTTGTCTGACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGA
AAGGTCAGGATTCTCTGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGA
GGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
Found at i:368686 original size:19 final size:16
Alignment explanation
Indices: 368645--368675 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
368635 CATTCTCATT
368645 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
368661 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
368676 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 368145 -- 368644
TCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 368676 -- 369175
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTTCCTTTCCATTTGTGTGAACACTAATGGCATTGGTTGATGGTCAGCACTCATTT
TGATGGAAAATGGCATCTAATTGCAATTGATCCTTTCCTTTATCAAGAATTGCAACCTTTCCTTT
CTTCCTTTCCATTCAGAAGCACTTTGAACGATTTGTCTGACCTTATGGAAAGGTTATGGAAAAGA
AAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTT
Found at i:368968 original size:19 final size:19
Alignment explanation
Indices: 368946--368999 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
368936 AAGGCAATTA
*
368946 TGGAAAGGTCAGGATTCTC
1 TGGAAAGGTCAGGACTCTC
368965 TGGAAAGGTCAGGACTCTC
1 TGGAAAGGTCAGGACTCTC
368984 TGGAAAGGTCAGGACT
1 TGGAAAGGTCAGGACT
369000 AATGAGAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (19 bp):
TGGAAAGGTCAGGACTCTC
Left flanking sequence: Indices 368446 -- 368945
TTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCT
GTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATTTGTGTGAA
CACTAATGGCATTGGTTGATGGTCAGCACTCATTTTGATGGAAAATGGCATCTAATTGCAATTGA
TCCTTTCCTTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACG
ATTTGTCTGACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTA
Right flanking sequence: Indices 369000 -- 369499
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATT
ATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGT
CATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAG
Found at i:369210 original size:76 final size:79
Alignment explanation
Indices: 369084--369240 Score: 239
Period size: 76 Copynumber: 2.0 Consensus size: 79
369074 TTATCAAAAA
369084 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
369146 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
369160 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
369225 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
369241 TGAAAGGTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 52 0.72
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 368584 -- 369083
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATTTGTGTGAACACTAATG
GCATTGGTTGATGGTCAGCACTCATTTTGATGGAAAATGGCATCTAATTGCAATTGATCCTTTCC
TTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACGATTTGTCT
GACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGT
CAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 369241 -- 369740
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATT
GTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTAC
TCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAG
AACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGA
Found at i:369232 original size:43 final size:43
Alignment explanation
Indices: 369062--369233 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
369052 TTGTATGTCA
* * *
369062 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * * *
369105 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
369143 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
369181 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
369224 TCAGGACTGA
1 TCAGGACTGA
369234 TTCTTCTTGA
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 54 0.54
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 368562 -- 369061
TGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTT
TCCATTTGTGTGAACACTAATGGCATTGGTTGATGGTCAGCACTCATTTTGATGGAAAATGGCAT
CTAATTGCAATTGATCCTTTCCTTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAG
AAGCACTTTGAACGATTTGTCTGACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGAAA
GGTCAGGATTCTCTGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 369234 -- 369733
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCA
TTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAG
Found at i:369243 original size:24 final size:24
Alignment explanation
Indices: 369214--369332 Score: 102
Period size: 24 Copynumber: 4.9 Consensus size: 24
369204 GTCAAGACTG
*
369214 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
369238 TCTTGAAAGGTCAGGACTCA---T
1 TCTTGAAAGGTCAGGACTCATTCT
* * * * * *
369259 TATGGAAAAGTCAGGAAGGTGAGGACTCT
1 TCTTGAAAGGTCAGG-A-CT---CATTCT
369288 T-TTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
369311 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
369333 GCAATTGTAT
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
21 13 0.17
22 1 0.01
23 6 0.08
24 39 0.52
26 2 0.03
27 1 0.01
28 11 0.15
29 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 368714 -- 369213
CTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATTTGTGTGAACACTAATG
GCATTGGTTGATGGTCAGCACTCATTTTGATGGAAAATGGCATCTAATTGCAATTGATCCTTTCC
TTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACGATTTGTCT
GACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGT
CAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 369333 -- 369832
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGTCATTAGTA
CTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGAC
Found at i:369284 original size:30 final size:28
Alignment explanation
Indices: 369244--369302 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
369234 TTCTTCTTGA
369244 AAGGTCAGGACTCATTATGGAAAAGTCAGG
1 AAGGTCAGGACTC-TT-TGGAAAAGTCAGG
* * *
369274 AAGGTGAGGACTCTTTTGAAAGGTCAGG
1 AAGGTCAGGACTCTTTGGAAAAGTCAGG
369302 A
1 A
369303 CTCATTCTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
29 2 0.08
30 12 0.46
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (28 bp):
AAGGTCAGGACTCTTTGGAAAAGTCAGG
Left flanking sequence: Indices 368744 -- 369243
TGACCTTTTCCTTTCCATTTGTGTGAACACTAATGGCATTGGTTGATGGTCAGCACTCATTTTGA
TGGAAAATGGCATCTAATTGCAATTGATCCTTTCCTTTATCAAGAATTGCAACCTTTCCTTTCTT
CCTTTCCATTCAGAAGCACTTTGAACGATTTGTCTGACCTTATGGAAAGGTTATGGAAAAGAAAG
GCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATG
AGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Right flanking sequence: Indices 369303 -- 369802
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAG
TACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCA
GGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG
Found at i:369405 original size:54 final size:56
Alignment explanation
Indices: 369341--369467 Score: 174
Period size: 56 Copynumber: 2.3 Consensus size: 56
369331 TTGCAATTGT
*
369341 ATGCCATTAGTACTCACTTGAC-AACAAATTGT-A-T-GTCTCTCACT-TGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGTCATTAGT-ACTCACTGT-ACAAACAA
369395 ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAA
*
369451 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
369468 CATACCAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
54 25 0.38
55 7 0.11
56 31 0.47
57 3 0.05
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 368841 -- 369340
TCCTTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACGATTTG
TCTGACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAA
GGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 369468 -- 369967
CATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATT
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTG
ACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
Found at i:369416 original size:28 final size:28
Alignment explanation
Indices: 369341--369467 Score: 156
Period size: 28 Copynumber: 4.6 Consensus size: 28
369331 TTGCAATTGT
369341 ATGCCATTAGTACTCACTTGAC-AACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* *
369368 ATTG-TA-T-GTCTCTCACTTGACAAACAA
1 A-TGCCATTAGT-ACTCACTTGACAAACAA
369395 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
*
369423 ATGTCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
*
369451 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
369468 CATACCAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
25 2 0.02
26 13 0.15
27 11 0.12
28 60 0.68
29 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 368841 -- 369340
TCCTTTATCAAGAATTGCAACCTTTCCTTTCTTCCTTTCCATTCAGAAGCACTTTGAACGATTTG
TCTGACCTTATGGAAAGGTTATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAA
GGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 369468 -- 369967
CATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATT
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTG
ACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
Found at i:369574 original size:16 final size:16
Alignment explanation
Indices: 369553--369583 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
369543 AGGACCCTTT
369553 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
369569 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
369584 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 369053 -- 369552
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGT
ACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 369584 -- 370083
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACT
Found at i:369652 original size:43 final size:43
Alignment explanation
Indices: 369604--369685 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
369594 ATTGAGGAAA
* * * *
369604 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
*
369647 AGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTT
369686 GAAAGATCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (43 bp):
AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 369104 -- 369603
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCA
TTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 369686 -- 370185
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGA
TCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
Found at i:369778 original size:28 final size:28
Alignment explanation
Indices: 369755--369874 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
369745 TGACAATTGT
369755 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
369783 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
369811 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
369839 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
369867 ATGCCATT
1 ATGCCATT
369875 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 369255 -- 369754
TCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 369875 -- 370374
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAACAAATGT
CATTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGC
Found at i:369958 original size:16 final size:16
Alignment explanation
Indices: 369937--369967 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
369927 TCATTCTTCT
369937 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
369953 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
369968 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 369437 -- 369936
CACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGA
ACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGT
ACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 369968 -- 370467
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTA
TGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAA
ACACAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATACAACAAATTGT
ATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGACTAATGACATACAA
TTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATCC
Found at i:370034 original size:43 final size:42
Alignment explanation
Indices: 369986--370083 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
369976 TGATTGAGGA
* * * *
369986 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
370029 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
370071 AAAGATCAGAACT
1 AAAG-TCAGAACT
370084 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 369486 -- 369985
GACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCT
TTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACT
GTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCAT
GACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTT
TCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 370084 -- 370583
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACC
ATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGA
CTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATCCGTCAAA
CCTTGATCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTTCCC
TGACGCAATGAAAAGCGATCCTTTCTGAAAACAAAAGGTGTTGGT
Found at i:370092 original size:384 final size:382
Alignment explanation
Indices: 369552--370256 Score: 1340
Period size: 384 Copynumber: 1.8 Consensus size: 382
369542 CAGGACCCTT
369552 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
1 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
*
369617 CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
66 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
369682 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
131 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
369747 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
196 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
369812 TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT-ACTCACTTGACAAACAAATGCCATTT
261 TGCCATTAGTACTCACTTGACAACAAAATG-CA-T-GTCACTCACTTGACAAACAAATGCCATTT
369876 TCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
323 TCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
369936 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
1 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
370001 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
66 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
370066 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
131 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
370131 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
196 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
* * *
370196 TGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATT
261 TGCCATTAGTACTCACTTGACAACAAAATGCATGTCACTCACTTGACAAACAAATGCCATT
370257 AGTACTTTCC
Statistics
Matches: 316, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
381 2 0.01
382 25 0.08
383 1 0.00
384 288 0.91
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (382 bp):
TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAACAAAATGCATGTCACTCACTTGACAAACAAATGCCATTTTCC
ATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
Left flanking sequence: Indices 369052 -- 369551
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGT
CTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTG
TACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTT
Right flanking sequence: Indices 370257 -- 370756
AGTACTTTCCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAA
ACAAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAA
GGACTCTCTGGAAAGGTCAGGACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATCATT
TCCTTTCCATCAATCCGTCAAACCTTGATCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCT
TTGCTCGTGACGTGACGTTCCCTGACGCAATGAAAAGCGATCCTTTCTGAAAACAAAAGGTGTTG
GTGCGAAGGACGGAGTCTTGGTCCCGAGTCGAGCTGGGGCGTAATTTCATTCTCCTCACGGGAGT
GAGTGCACCACAAGACCTGAAAAGTTGCTCCCTCGCCTCGCATTACGGCATCTGTCTTTGTTTTT
TCCTAAGACGGCTCCTCTTTCTTCTTTCTTTCTTTTCTACGATAA
Found at i:370162 original size:28 final size:28
Alignment explanation
Indices: 370139--370336 Score: 161
Period size: 28 Copynumber: 7.4 Consensus size: 28
370129 TGACAATTGT
*
370139 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
370167 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
370195 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
370223 TTG-TA-T-GTCTCTCACTTGACAAACAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
* *
370249 ATGCCATTAGTACT---TT--C---CAT
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
370269 ATGCCATTAGTACTCAC-TGTACAAACACA
1 ATGCCATTAGTACTCACTTG-ACAAA-AAA
*
370298 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
*
370326 ATGTCATTAGT
1 ATGCCATTAGT
370337 GTTGACCATA
Statistics
Matches: 139, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
20 16 0.12
22 1 0.01
23 1 0.01
25 5 0.04
26 17 0.12
27 2 0.01
28 70 0.50
29 27 0.19
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 369639 -- 370138
TCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTT
CTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
ATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 370337 -- 370836
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAG
GTCAGGACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATC
CGTCAAACCTTGATCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGA
CGTTCCCTGACGCAATGAAAAGCGATCCTTTCTGAAAACAAAAGGTGTTGGTGCGAAGGACGGAG
TCTTGGTCCCGAGTCGAGCTGGGGCGTAATTTCATTCTCCTCACGGGAGTGAGTGCACCACAAGA
CCTGAAAAGTTGCTCCCTCGCCTCGCATTACGGCATCTGTCTTTGTTTTTTCCTAAGACGGCTCC
TCTTTCTTCTTTCTTTCTTTTCTACGATAATCCAAGCAGCAGCTCCACAAGTCTGCTCGGAACCG
GTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCTCTTCTGAG
Found at i:370258 original size:54 final size:56
Alignment explanation
Indices: 370139--370336 Score: 192
Period size: 54 Copynumber: 3.7 Consensus size: 56
370129 TGACAATTGT
370139 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
* *
370195 ATGCCATTAGTACTCACTTGAC-AACAAATTG-TA-T-GTCTCTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGCCATTAGT-ACTCACTTGACAACA-AA
* *
370249 ATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCAC-TGTACAAACACA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG-AC-AACAAA
*
370298 ATGCCATTAGTACTCAC-TGTACAAACAAATGTCATTAGT
1 ATGCCATTAGTACTCACTTG-ACAAACAAATGCCATTAGT
370337 GTTGACCATA
Statistics
Matches: 116, Mismatches: 8, Indels: 35
0.73 0.05 0.22
Matches are distributed among these distances:
46 2 0.02
47 6 0.05
48 8 0.07
49 20 0.17
50 1 0.01
51 3 0.03
53 3 0.03
54 30 0.26
55 7 0.06
56 24 0.21
57 12 0.10
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 369639 -- 370138
TCTTTCACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTT
CTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
ATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 370337 -- 370836
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAG
GTCAGGACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATC
CGTCAAACCTTGATCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGA
CGTTCCCTGACGCAATGAAAAGCGATCCTTTCTGAAAACAAAAGGTGTTGGTGCGAAGGACGGAG
TCTTGGTCCCGAGTCGAGCTGGGGCGTAATTTCATTCTCCTCACGGGAGTGAGTGCACCACAAGA
CCTGAAAAGTTGCTCCCTCGCCTCGCATTACGGCATCTGTCTTTGTTTTTTCCTAAGACGGCTCC
TCTTTCTTCTTTCTTTCTTTTCTACGATAATCCAAGCAGCAGCTCCACAAGTCTGCTCGGAACCG
GTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCTCTTCTGAG
Found at i:370302 original size:29 final size:28
Alignment explanation
Indices: 370269--370336 Score: 118
Period size: 29 Copynumber: 2.4 Consensus size: 28
370259 TACTTTCCAT
370269 ATGCCATTAGTACTCACTGTACAAACACA
1 ATGCCATTAGTACTCACTGTACAAACA-A
370298 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
370326 ATGTCATTAGT
1 ATGCCATTAGT
370337 GTTGACCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 11 0.29
29 27 0.71
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 369769 -- 370268
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
ATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 370337 -- 370836
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCACAATTATGGAAGGACTCTCTGGAAAG
GTCAGGACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATCATTTCCTTTCCATCAATC
CGTCAAACCTTGATCCCTTCTTTCAGAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGA
CGTTCCCTGACGCAATGAAAAGCGATCCTTTCTGAAAACAAAAGGTGTTGGTGCGAAGGACGGAG
TCTTGGTCCCGAGTCGAGCTGGGGCGTAATTTCATTCTCCTCACGGGAGTGAGTGCACCACAAGA
CCTGAAAAGTTGCTCCCTCGCCTCGCATTACGGCATCTGTCTTTGTTTTTTCCTAAGACGGCTCC
TCTTTCTTCTTTCTTTCTTTTCTACGATAATCCAAGCAGCAGCTCCACAAGTCTGCTCGGAACCG
GTCGATTCCTGAGCCATTCGTTCTCCCGTCCACCTCTCTTCTGAG
Found at i:372471 original size:28 final size:28
Alignment explanation
Indices: 372439--372621 Score: 334
Period size: 28 Copynumber: 6.5 Consensus size: 28
372429 GCATATGGAA
372439 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
372467 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
372495 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
372523 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
372551 AGTACTAATGGCATTT-TGTTGTCAAGTG
1 AGTACTAATGGCATTTGT-TTGTCAAGTG
372579 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
372607 AGTACTAATGGCATT
1 AGTACTAATGGCATT
372622 GAATTGCAAT
Statistics
Matches: 152, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 148 0.97
29 3 0.02
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 371939 -- 372438
CCCTATTTCCCGTCTCCGGTTCGCCGCTGCCCGGCTCAACGCACCTGAGATTCTGGCCGGCTTTC
CCCATTCATCGTTAGTACGGGCGAGATGGGAACGGGGAAGTGAAAAAAGCAAATGAGACGCCGGG
AGCATGAGAGGTGCAGGGCTCCCCGCTACTAGAGACATGGTTGAGTTCGTCCCTTCACTGATTCC
GACCGATTCCACCCACCGGTTTCTTTCGCTATCGCGACTGCCTCCCTTTCCGGGCATTGGCACTG
GCGAAAGAAGAAGCAAAACCTCTTTGACTCAAAAAACACTCGCAAAGCGAAGCTTCAGGGACAAC
TTTGACTTTCAGGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATT
ATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGC
ACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 372622 -- 373121
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAATACAGTATTGACCTTTCAATAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
Found at i:372657 original size:24 final size:24
Alignment explanation
Indices: 372633--372717 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
372623 AATTGCAATG
*
372633 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
372657 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
372676 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
372700 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
372718 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 372133 -- 372632
CGACCGATTCCACCCACCGGTTTCTTTCGCTATCGCGACTGCCTCCCTTTCCGGGCATTGGCACT
GGCGAAAGAAGAAGCAAAACCTCTTTGACTCAAAAAACACTCGCAAAGCGAAGCTTCAGGGACAA
CTTTGACTTTCAGGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCAT
TATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAG
CACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTT
TGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 372718 -- 373217
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTCAATAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
Found at i:372684 original size:19 final size:19
Alignment explanation
Indices: 372657--372731 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
372647 AAGAAGAATG
372657 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
372676 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
372700 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
372719 AGTCTTGACCTTT
1 AGTCCTGACCTTT
372732 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 372157 -- 372656
TTTCGCTATCGCGACTGCCTCCCTTTCCGGGCATTGGCACTGGCGAAAGAAGAAGCAAAACCTCT
TTGACTCAAAAAACACTCGCAAAGCGAAGCTTCAGGGACAACTTTGACTTTCAGGACATCAAGGT
TTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCC
ATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 372732 -- 373231
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTCAATAAGAATCAGTCCTGATCT
TTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTT
TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTC
AAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAG
Found at i:372783 original size:86 final size:85
Alignment explanation
Indices: 372657--373006 Score: 368
Period size: 86 Copynumber: 4.1 Consensus size: 85
372647 AAGAAGAATG
* * *
372657 AGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
1 AGTCCTGACCTTTAAAGACAGTATTGACCTTTTCAATAAG-ATCAGTCCTGA-CTTTCAAGACAG
372721 TCTTGACCTTTTTGGTAAGGTT
64 TCTTGACCTTTTTGGTAAGGTT
* *
372743 AGTCCTGA-CTTTGAAATACAGTATTGACC-TTTCAATAAGAATCAGTCCTGATCTTTCAAGATA
1 AGTCCTGACCTTT-AAAGACAGTATTGACCTTTTCAATAAG-ATCAGTCCTGA-CTTTCAAGACA
*
372806 GTCTTGATCTTTTTGGTAAGGTT
63 GTCTTGACCTTTTTGGTAAGGTT
** * *
372829 AGTCCTGA-CTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA-TTTCAAGACAGT
1 AGTCCTGACCTTT-AAAGACAGTATTGACCTTTTCAATAAGATCAGTCCTGACTTTCAAGACAGT
*** * ** *
372892 CTTGACCTTTCAAGAAAAATC
65 CTTGACCTTTTTGGTAAGGTT
* *** * *
372913 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTAAAGACAGTATTGACCTTTTCAATAAGATCAGTCCTGACTTT-CAAGACAGT
* *
372978 CTTGACCTTTTTGATAAGGTG
65 CTTGACCTTTTTGGTAAGGTT
*
372999 AGTACTGA
1 AGTCCTGA
373007 TGACATACAA
Statistics
Matches: 225, Mismatches: 34, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
84 67 0.30
85 11 0.05
86 139 0.62
87 8 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (85 bp):
AGTCCTGACCTTTAAAGACAGTATTGACCTTTTCAATAAGATCAGTCCTGACTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTT
Left flanking sequence: Indices 372157 -- 372656
TTTCGCTATCGCGACTGCCTCCCTTTCCGGGCATTGGCACTGGCGAAAGAAGAAGCAAAACCTCT
TTGACTCAAAAAACACTCGCAAAGCGAAGCTTCAGGGACAACTTTGACTTTCAGGACATCAAGGT
TTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCC
ATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 373007 -- 373506
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGAT
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
Found at i:372904 original size:19 final size:19
Alignment explanation
Indices: 372880--372944 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
372870 TCAGTACTGA
372880 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
372899 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
*
372923 TTTCAAGACAGTATTGACC
1 TTTCAAGACAGTCTTGACC
372942 TTT
1 TTT
372945 TTGGTAAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
19 19 0.50
20 1 0.03
23 1 0.03
24 17 0.45
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 372380 -- 372879
TTGGTATGGTCAGCACTCATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACT
AATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTG
ACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGA
CCTTTCAATAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 372945 -- 373444
TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
Found at i:372988 original size:43 final size:43
Alignment explanation
Indices: 372657--373006 Score: 327
Period size: 43 Copynumber: 8.2 Consensus size: 43
372647 AAGAAGAATG
*** *
372657 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
372700 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *** *
372743 AGTCCTGA-CTTTGAAATACAGTATTGACC-TTTCAATAAGAATC
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
372786 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
372829 AGTCCTGA-CTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
372872 AGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
372913 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
372956 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
372999 AGTACTGA
1 AGTCCTGA
373007 TGACATACAA
Statistics
Matches: 246, Mismatches: 52, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
41 28 0.11
42 22 0.09
43 182 0.74
44 14 0.06
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 372157 -- 372656
TTTCGCTATCGCGACTGCCTCCCTTTCCGGGCATTGGCACTGGCGAAAGAAGAAGCAAAACCTCT
TTGACTCAAAAAACACTCGCAAAGCGAAGCTTCAGGGACAACTTTGACTTTCAGGACATCAAGGT
TTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCC
ATTATCCATCAACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 373007 -- 373506
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGAT
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
Found at i:373041 original size:19 final size:19
Alignment explanation
Indices: 373020--373137 Score: 83
Period size: 19 Copynumber: 5.7 Consensus size: 19
373010 CATACAAATG
* *
373020 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
*
373039 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-C
*
373063 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
373082 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AA-AA-C
*
373106 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
*
373125 AGTCTTGACCTTT
1 AGTCCTGACCTTT
373138 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 8, Indels: 20
0.74 0.07 0.18
Matches are distributed among these distances:
19 38 0.47
20 3 0.04
21 4 0.05
22 4 0.05
23 4 0.05
24 28 0.35
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 372520 -- 373019
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTCAATA
AGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 373138 -- 373637
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTT
Found at i:373070 original size:24 final size:23
Alignment explanation
Indices: 373016--373120 Score: 100
Period size: 24 Copynumber: 4.8 Consensus size: 23
373006 ATGACATACA
*
373016 AATGAGTCTTGACCTTTC--AA-
1 AATGAGTCCTGACCTTTCAGAAG
373036 AA-GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTC-AGAAG
373059 AATGAGTCCTGACCTTTC--AAG
1 AATGAGTCCTGACCTTTCAGAAG
* *
373080 -A-CAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTT-CAGAAG
*
373102 AATCAGTCCTGACCTTTCA
1 AATGAGTCCTGACCTTTCA
373121 AGACAGTCTT
Statistics
Matches: 71, Mismatches: 4, Indels: 17
0.77 0.04 0.18
Matches are distributed among these distances:
19 26 0.37
20 4 0.06
21 3 0.04
22 5 0.07
23 5 0.07
24 28 0.39
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (23 bp):
AATGAGTCCTGACCTTTCAGAAG
Left flanking sequence: Indices 372516 -- 373015
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTC
AATAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 373121 -- 373620
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAG
TATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGA
Found at i:373072 original size:43 final size:43
Alignment explanation
Indices: 373016--373345 Score: 234
Period size: 43 Copynumber: 7.8 Consensus size: 43
373006 ATGACATACA
* * * *
373016 AATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
373059 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* ***
373102 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * *
373146 -GTTAGTCCTGA-CTTTGAAATACAGTCTTGA-C---C-AGAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCAAGAAG
* * * * ***
373183 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * * * ** *
373227 -GTTAGTCCTGA-CTTTGAAATACAGTATTGACCTTTTTGATAAG
1 AATGAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* * * *
373270 -GTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
373310 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
373346 TTGGTAAGGT
Statistics
Matches: 229, Mismatches: 43, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
37 3 0.01
38 21 0.09
39 5 0.02
40 6 0.03
41 22 0.10
42 12 0.05
43 150 0.66
44 10 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 372516 -- 373015
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTC
AATAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
AAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 373346 -- 373845
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:373210 original size:81 final size:81
Alignment explanation
Indices: 373095--373258 Score: 292
Period size: 81 Copynumber: 2.0 Consensus size: 81
373085 CTTGACCTTT
373095 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
*
373160 TGAAATACAGTCTTGA
66 TGAAATACAGTATTGA
* * *
373176 CCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
373241 TGAAATACAGTATTGA
66 TGAAATACAGTATTGA
373257 CC
1 CC
373259 TTTTTGATAA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (81 bp):
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAATACAGTATTGA
Left flanking sequence: Indices 372595 -- 373094
GTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTCAATAAGAATCAGTC
CTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTG
ACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 373259 -- 373758
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Found at i:373305 original size:19 final size:19
Alignment explanation
Indices: 373281--373345 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
373271 TCAGTACTGA
373281 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
373300 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
373324 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
373343 TTT
1 TTT
373346 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 372781 -- 373280
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAA
TCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 373346 -- 373845
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:373318 original size:208 final size:203
Alignment explanation
Indices: 372667--373484 Score: 745
Period size: 213 Copynumber: 4.0 Consensus size: 203
372657 AGTCCTGACC
*
372667 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* * *
372732 TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTCAATAAGAATCAGTCCTGATCT
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGA-C---C-AGAAGAATCAGTCCTGA---
372797 TTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTT
123 -TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTT
372862 TGATAAGGTCAGTACTGA
186 TGATAAGGTCAGTACTGA
*
372880 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* * * * * * *
372945 TTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA-AGGTGAGTACTGATG
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC----AGA-AGA-ATCAGT-C--CTG
* * ** * * * **
373009 ACATACAAATGAGTCTTGA-C-CTTT-CAAAAG--AGTCCTGACCTTTCAAGAAGAATGAGTCCT
122 --AT-CAGAT-AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA-CTTT-GA-AAG-A-CAGTATT
* *
373069 GACC--TTT--CAA-GACAGT-CTTGA
178 GACCTTTTTGATAAGGTCAGTAC-TGA
*
373090 CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAG----A-CAG---T---C-TT---GAC---CTT
1 --TTT-C--AAG-A-CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTT
* * *
373137 ------TTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
59 GACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA-
*
373196 CTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTT
123 ---TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTT
373261 TTTGATAAGGTCAGTACTGA
184 TTTGATAAGGTCAGTACTGA
373281 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
373346 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
* *
373411 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
373476 AGTACTGA
196 AGTACTGA
373484 T
1 T
373485 GACATACAAA
Statistics
Matches: 490, Mismatches: 49, Indels: 142
0.72 0.07 0.21
Matches are distributed among these distances:
183 1 0.00
184 17 0.03
185 3 0.01
186 20 0.04
187 7 0.01
188 15 0.03
189 13 0.03
190 6 0.01
191 16 0.03
192 2 0.00
193 39 0.08
195 1 0.00
196 2 0.00
199 5 0.01
202 6 0.01
203 77 0.16
204 2 0.00
205 2 0.00
206 1 0.00
208 55 0.11
209 3 0.01
210 16 0.03
211 6 0.01
212 13 0.03
213 114 0.23
214 7 0.01
215 20 0.04
216 3 0.01
217 17 0.03
218 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 372167 -- 372666
GCGACTGCCTCCCTTTCCGGGCATTGGCACTGGCGAAAGAAGAAGCAAAACCTCTTTGACTCAAA
AAACACTCGCAAAGCGAAGCTTCAGGGACAACTTTGACTTTCAGGACATCAAGGTTTGATGGTTG
ATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATC
AACCAATTTGGATGGATTTTGGTATGGTCAGCACTCATGACATTTGTTTGTACAGTGAGTACTAA
TGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 373485 -- 373984
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAG
Found at i:373359 original size:43 final size:42
Alignment explanation
Indices: 373063--373483 Score: 293
Period size: 43 Copynumber: 10.2 Consensus size: 42
373053 AAGAAGAATG
*** *
373063 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
373106 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
373149 AGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
373187 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
373230 AGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
373273 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
373314 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * * *
373357 AGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
373395 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
373433 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
373476 AGTACTGA
1 AGTCCTGA
373484 TGACATACAA
Statistics
Matches: 289, Mismatches: 63, Indels: 52
0.72 0.16 0.13
Matches are distributed among these distances:
33 10 0.03
37 6 0.02
38 43 0.15
39 7 0.02
41 28 0.10
42 13 0.04
43 176 0.61
44 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 372563 -- 373062
ATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTG
CAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
ATACAGTATTGACCTTTCAATAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 373484 -- 373983
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGA
Found at i:373554 original size:16 final size:16
Alignment explanation
Indices: 373530--373560 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
373520 CATTCTCATT
373530 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
373546 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
373561 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 373030 -- 373529
TTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 373561 -- 374060
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
Found at i:374096 original size:19 final size:19
Alignment explanation
Indices: 374068--374138 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
374058 CTTCCATAAT
374068 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
374087 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
374105 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
374125 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
374139 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 373568 -- 374067
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 374139 -- 374638
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:374116 original size:38 final size:38
Alignment explanation
Indices: 374065--374195 Score: 147
Period size: 38 Copynumber: 3.3 Consensus size: 38
374055 GTCCTTCCAT
374065 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
374103 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** * *
374147 -GTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
374184 AATCAGTCCTGA
1 AATCAGTCCTGA
374196 TCAGATAGTC
Statistics
Matches: 78, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 28 0.36
44 3 0.04
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 373565 -- 374064
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 374196 -- 374695
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
Found at i:374171 original size:43 final size:42
Alignment explanation
Indices: 374105--374298 Score: 149
Period size: 43 Copynumber: 4.8 Consensus size: 42
374095 ACCAGAAGAA
**
374105 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
374148 TCAGTCCTGACCTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
374186 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
374224 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
374267 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
374299 CCATTTTTGG
Statistics
Matches: 117, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 3 0.03
38 21 0.18
39 3 0.03
41 21 0.18
43 58 0.50
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 373605 -- 374104
GTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 374299 -- 374798
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
Found at i:374247 original size:76 final size:78
Alignment explanation
Indices: 374067--374254 Score: 256
Period size: 76 Copynumber: 2.4 Consensus size: 78
374057 CCTTCCATAA
*
374067 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCT
374131 TGACCTTTTTGGTAAGG
62 TGACCTTTTTGGTAAGG
* * * * *
374148 TCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
374211 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
374224 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACC
374255 TTTTTGATAA
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
76 51 0.53
77 2 0.02
80 3 0.03
81 40 0.42
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 373567 -- 374066
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 374255 -- 374754
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
Found at i:374426 original size:43 final size:42
Alignment explanation
Indices: 374379--374531 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
374369 ACCTTTCAAG
374379 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
374422 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
374457 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
374498 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
374532 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 373879 -- 374378
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 374532 -- 375031
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
TACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
Found at i:374602 original size:16 final size:16
Alignment explanation
Indices: 374577--374607 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
374567 TCATTCTCAT
374577 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
374593 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
374608 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 374077 -- 374576
CCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 374608 -- 375107
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
Found at i:374645 original size:19 final size:23
Alignment explanation
Indices: 374594--374649 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 23
374584 GACCTTTCAT
374594 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTTCCA-AAGAATC
*
374618 AGTCCTGACCTTT-C-AAG-A-C
1 AGTCTTGACCTTTCCAAAGAATC
374637 AGTCTTGACCTTT
1 AGTCTTGACCTTT
374650 TTGGTAAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 13 0.43
20 1 0.03
21 3 0.10
23 1 0.03
24 12 0.40
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (23 bp):
AGTCTTGACCTTTCCAAAGAATC
Left flanking sequence: Indices 374094 -- 374593
GACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 374650 -- 375149
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Found at i:374787 original size:180 final size:168
Alignment explanation
Indices: 374432--374764 Score: 395
Period size: 180 Copynumber: 1.9 Consensus size: 168
374422 ACAGTCTTGA
* * * *
374432 CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 CCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
* *
374497 GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
66 GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTC
* * *
374562 CTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTT
128 CTC-A-CA-T-TAATCAGTCCTGACCTTTCATAGTCCTGACCTTT
374607 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
* * *
374672 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG-CA-ATTGGTCC
61 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATA-TGGTCA
374735 TGTCCTTC-CA-TAATCAGTCCTGACCTTTCA
125 T-TCC-TCACATTAATCAGTCCTGACCTTTCA
374765 AGAAGAATGA
Statistics
Matches: 139, Mismatches: 11, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
172 18 0.13
175 22 0.16
176 6 0.04
177 4 0.03
178 2 0.01
179 2 0.01
180 85 0.61
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (168 bp):
CCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATATGGTCATTCCTC
ACATTAATCAGTCCTGACCTTTCATAGTCCTGACCTTT
Left flanking sequence: Indices 373932 -- 374431
GTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTC
CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
Right flanking sequence: Indices 374765 -- 375264
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTA
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATT
Found at i:374834 original size:113 final size:113
Alignment explanation
Indices: 374675--374880 Score: 369
Period size: 113 Copynumber: 1.8 Consensus size: 113
374665 CTGACTGTGA
374675 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
*
374740 TTCCAT-AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
66 TTCCATCAA-AAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
* *
374788 AAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
374853 TTCCATCAAAAGTCCTGACCTTTCAAGA
66 TTCCATCAAAAGTCCTGACCTTTCAAGA
374881 CAGTCTTGAT
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 87 0.98
114 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (113 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
Left flanking sequence: Indices 374175 -- 374674
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
AATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Right flanking sequence: Indices 374881 -- 375380
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTT
TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTT
CTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACA
Found at i:374927 original size:43 final size:43
Alignment explanation
Indices: 374880--375032 Score: 112
Period size: 43 Copynumber: 3.8 Consensus size: 43
374870 ACCTTTCAAG
374880 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* ** * * *
374923 ACAGTATTGA-C----CAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* *
374958 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
374999 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
375033 TGACATACAA
Statistics
Matches: 80, Mismatches: 18, Indels: 24
0.66 0.15 0.20
Matches are distributed among these distances:
33 7 0.09
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 37 0.46
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 374380 -- 374879
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 375033 -- 375532
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTT
TTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTT
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
Found at i:375117 original size:248 final size:251
Alignment explanation
Indices: 374807--375310 Score: 662
Period size: 248 Copynumber: 2.0 Consensus size: 251
374797 TTGACCTTTT
374807 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
1 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
* *** * *
374872 CTTTCAAGACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGAAATACAGTATTGACC
66 CTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCT-TGAAAGACAGTATTGACC
* * * * *
374935 -AG-AAGAATCAGTCCTGA-TCAGAT-AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
129 TAGTAAG-ATCAGTCCTGATTCAAATAAGTATTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
*
374996 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
193 AAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
*
375055 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCCTGA
1 TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCCTGA
** *
375119 CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
65 CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTGAAAGACAGTATTGACC-
* * * *
375184 TTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTCCTGAC
129 ---TAGTAAGATCAGTCCTGA--TTCAAATA-AGTATTGACCTTTTTGATAAGGTCAGTCCTGAC
* *
375249 TTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
188 TGTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
375311 ACCTTTCAAA
Statistics
Matches: 220, Mismatches: 22, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
247 5 0.02
248 108 0.49
249 2 0.01
253 10 0.05
254 3 0.01
256 4 0.02
258 88 0.40
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (251 bp):
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTGAAAGACAGTATTGACCTA
GTAAGATCAGTCCTGATTCAAATAAGTATTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTA
Left flanking sequence: Indices 374307 -- 374806
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
Right flanking sequence: Indices 375311 -- 375810
ACCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
Found at i:375138 original size:19 final size:19
Alignment explanation
Indices: 375110--375185 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
375100 CTTCCATAAT
375110 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
375129 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
375152 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
375172 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
375186 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 374610 -- 375109
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 375186 -- 375685
TTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
Found at i:375156 original size:24 final size:24
Alignment explanation
Indices: 375107--375171 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
375097 GTCCTTCCAT
375107 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
375128 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
375150 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
375172 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 374607 -- 375106
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 375172 -- 375671
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGT
GAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACC
TTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
Found at i:375201 original size:43 final size:43
Alignment explanation
Indices: 375109--375290 Score: 190
Period size: 43 Copynumber: 4.2 Consensus size: 43
375099 CCTTCCATAA
* * ** * *
375109 TCAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGA-CTTTGAAAGACAGTATTGACCTTTTTGATAAG-G
* * *
375152 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTATTGACCTTTTTGATAAGG
* *
375195 TTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGG
*
375238 TCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGG
* *
375281 TGAGTACTGA
1 TCAGTCCTGA
375291 TGACATACAA
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 4 0.03
43 114 0.92
44 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGG
Left flanking sequence: Indices 374609 -- 375108
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 375291 -- 375790
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTT
TTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
TAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTG
Found at i:375248 original size:24 final size:24
Alignment explanation
Indices: 375172--375248 Score: 58
Period size: 24 Copynumber: 3.4 Consensus size: 24
375162 CCTTTCAAGA
* *
375172 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
*
375196 TAGTCCTGA-C--TTTGA-AA--T
1 CAGTCCTGACCTTTTTGATAAGGT
**
375214 ACAGTATTGACCTTTTTGATAAGGT
1 -CAGTCCTGACCTTTTTGATAAGGT
375239 CAGTCCTGAC
1 CAGTCCTGAC
375249 TTTGAAATAC
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
18 1 0.03
19 6 0.16
20 3 0.08
21 4 0.11
22 5 0.13
23 3 0.08
24 15 0.39
25 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 374672 -- 375171
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 375249 -- 375748
TTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTT
GACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
Found at i:375267 original size:19 final size:19
Alignment explanation
Indices: 375202--375267 Score: 53
Period size: 19 Copynumber: 3.2 Consensus size: 19
375192 AGGTTAGTCC
375202 TGACTTTGAAATACAGTAT
1 TGACTTTGAAATACAGTAT
**
375221 TGACCTTTTTGATAAGGT-CAGTCC
1 TGA-C--TTTGA-AA--TACAGTAT
375245 TGACTTTGAAATACAGTAT
1 TGACTTTGAAATACAGTAT
375264 TGAC
1 TGAC
375268 CTTTTTGATA
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 3 0.08
21 5 0.14
22 5 0.14
23 3 0.08
24 7 0.19
25 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36
Consensus pattern (19 bp):
TGACTTTGAAATACAGTAT
Left flanking sequence: Indices 374702 -- 375201
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCC
Right flanking sequence: Indices 375268 -- 375767
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACC
TTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
Found at i:375446 original size:16 final size:16
Alignment explanation
Indices: 375422--375452 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
375412 CATTCTCATT
375422 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
375438 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
375453 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 374922 -- 375421
TACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTCCTG
ACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 375453 -- 375952
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
Found at i:375509 original size:43 final size:42
Alignment explanation
Indices: 375460--375589 Score: 197
Period size: 43 Copynumber: 3.0 Consensus size: 42
375450 TCAAGAAGAA
* *
375460 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
375503 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
*
375546 TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGATAAGG
375589 T
1 T
375590 GAGTACTAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 4 0.05
43 75 0.94
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 374960 -- 375459
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAATACAGTA
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCTATAATTAGTCTT
CACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 375590 -- 376089
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCC
Found at i:375532 original size:19 final size:19
Alignment explanation
Indices: 375505--375575 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
375495 TGGTAAGGTT
375505 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
375524 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
375548 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
375567 AGTCTTGAC
1 AGTCCTGAC
375576 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 3 0.07
21 4 0.10
22 5 0.12
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 375005 -- 375504
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTG
ACCTTTCTATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTT
GATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 375576 -- 376075
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
Found at i:375820 original size:43 final size:42
Alignment explanation
Indices: 375773--375925 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
375763 ACCTTTCAAG
375773 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* ** * * *
375816 ACAGTATTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
375851 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
375892 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
375926 TGACATACAA
Statistics
Matches: 81, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
33 7 0.09
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 37 0.46
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 375273 -- 375772
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCCTGACCTTTCT
ATAATTAGTCTTCACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 375926 -- 376425
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTG
ACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTAT
GCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATG
Found at i:376031 original size:19 final size:19
Alignment explanation
Indices: 376003--376073 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
375993 CTTCCATAAT
376003 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
376022 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
376040 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
376060 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
376074 TTGGTCAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 375503 -- 376002
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 376074 -- 376573
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATT
CAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAAT
ATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGG
ACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATT
Found at i:376103 original size:43 final size:43
Alignment explanation
Indices: 376056--376254 Score: 177
Period size: 43 Copynumber: 4.9 Consensus size: 43
376046 CTGACCTTTC
* * *
376056 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
376099 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* * * *
376142 AATACAGTATTGACC------AGAAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGACTGTGA
* * * * * *
376175 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
376218 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
376255 TGACATACAA
Statistics
Matches: 122, Mismatches: 22, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
33 10 0.08
35 1 0.01
37 4 0.03
38 19 0.16
39 3 0.02
41 1 0.01
43 84 0.69
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 375556 -- 376055
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 376255 -- 376754
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTTA
AAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
Found at i:376221 original size:119 final size:121
Alignment explanation
Indices: 376021--376254 Score: 364
Period size: 119 Copynumber: 1.9 Consensus size: 121
376011 ACCTTTCAAG
* *
376021 ACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTA
1 ACAGTATTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTTA
*
376086 GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
63 GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAT
* *
376145 ACAGTATTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
1 ACAGTATTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
* *
376208 CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
66 CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
376255 TGACATACAA
Statistics
Matches: 103, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
119 73 0.71
120 2 0.02
124 28 0.27
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32
Consensus pattern (121 bp):
ACAGTATTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAT
Left flanking sequence: Indices 375521 -- 376020
GACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 376255 -- 376754
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTTA
AAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
Found at i:376551 original size:16 final size:16
Alignment explanation
Indices: 376530--376560 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
376520 AGGACCCTTT
376530 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
376546 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
376561 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 376030 -- 376529
ACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGT
CCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAA
AGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 376561 -- 377060
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGA
TCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAA
TGAGTACTCACCATACCAATAAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:376712 original size:28 final size:28
Alignment explanation
Indices: 376689--376808 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
376679 TGACAATTGT
376689 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
376717 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
376745 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
376773 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
376801 ATGCCATT
1 ATGCCATT
376809 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 376189 -- 376688
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
ATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACC
GGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCC
ATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGA
AAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGG
AAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
AAAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 376809 -- 377308
TTCCATCAACAATGAGTACTCACCATACCAATAAAGGTGAGGACTGTCTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAG
ACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
Found at i:376951 original size:43 final size:43
Alignment explanation
Indices: 376886--377098 Score: 180
Period size: 43 Copynumber: 5.2 Consensus size: 43
376876 TTGTATGTCA
* * *
376886 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
376929 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * * * *
376967 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
377005 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
377048 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
377091 TCAGGACT
1 TCAGGACT
377099 GATTCTTCTG
Statistics
Matches: 133, Mismatches: 24, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
33 9 0.07
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.05
41 1 0.01
42 4 0.03
43 91 0.68
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 376386 -- 376885
TCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAA
GGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAA
AAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAT
AAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 377099 -- 377598
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
Found at i:377036 original size:24 final size:24
Alignment explanation
Indices: 377004--377080 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
376994 GTATTTCACA
*
377004 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
* *
377028 GTCAAGACTG-TCTT-TC--ACA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
377047 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
377071 GTCAAGACTG
1 GTCAAGACTG
377081 TCTTGAAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 5 0.13
24 17 0.45
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 376504 -- 377003
ATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACT
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAATAAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 377081 -- 377580
TCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
Found at i:377091 original size:19 final size:19
Alignment explanation
Indices: 377067--377340 Score: 105
Period size: 19 Copynumber: 13.7 Consensus size: 19
377057 ACCTTACCAA
377067 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377086 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
377106 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377124 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
377148 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
377167 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
377189 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
377208 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
377228 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
377246 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
377270 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377289 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
377309 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377327 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
377341 ATTATGGAAG
Statistics
Matches: 190, Mismatches: 36, Indels: 58
0.67 0.13 0.20
Matches are distributed among these distances:
17 14 0.07
19 112 0.59
20 4 0.02
21 14 0.07
22 10 0.05
23 3 0.02
24 33 0.17
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 376567 -- 377066
AATGATTGAGGAAAAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAA
CTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTA
CTCACCATACCAATAAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 377341 -- 377840
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
Found at i:377121 original size:38 final size:38
Alignment explanation
Indices: 377070--377343 Score: 277
Period size: 38 Copynumber: 6.9 Consensus size: 38
377060 TTACCAAAAA
377070 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
*
377108 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
* *
377147 GAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TTTT
1 ----GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCT
* *
377188 GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
1 G---G-TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
* ** * *
377230 GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--C----T
377273 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
377311 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
377344 ATGGAAGGAC
Statistics
Matches: 197, Mismatches: 18, Indels: 42
0.77 0.07 0.16
Matches are distributed among these distances:
37 4 0.02
38 93 0.47
39 3 0.02
40 1 0.01
41 28 0.14
42 7 0.04
43 58 0.29
44 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 376570 -- 377069
GATTGAGGAAAAGTCAGAACTCACCTTTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTT
CTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
ACCATACCAATAAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 377344 -- 377843
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:377237 original size:122 final size:121
Alignment explanation
Indices: 376901--377301 Score: 447
Period size: 122 Copynumber: 3.3 Consensus size: 121
376891 ACTCACCTTA
*
376901 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T
1 TCAAAAAGGTCAAGACTGTC-TTGAAA-TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTT
* * *
376965 ----GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA-GTCAGGACTGACCTTA
64 GAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA-TTCAAAGGTCAGGACTGA-CTTT
* * * *
377020 TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAAAAAGGTCAAGACTGTC-TTGA-AATCAGGACTAACCTTACCAAAAAGATCAAGACTATCTT
* * * *
377085 GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTT
64 GAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTCAAAGGTCAGGACTGACTTT
** * * *****
377143 TCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTG
1 TC-AAAAAGGTCAAGACTGTCTTGAAATCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG
*
377208 AAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC-AAGGTCAGGACTGACCTTA
65 AAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA-TTCAAAGGTCAGGACTGA-CTTT
*
377266 CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 TCAAAAAGGTCAAGACTGTCTTGAAA--TCAGGACT
377302 GATTCTTCTG
Statistics
Matches: 238, Mismatches: 32, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
119 58 0.24
120 2 0.01
122 99 0.42
123 16 0.07
124 63 0.26
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (121 bp):
TCAAAAAGGTCAAGACTGTCTTGAAATCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTCAAAGGTCAGGACTGACTTT
Left flanking sequence: Indices 376401 -- 376900
GGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTT
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCT
TTTTTGAAAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAATAAAGGTGAGGACTGT
CTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
Right flanking sequence: Indices 377302 -- 377801
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
Found at i:377288 original size:81 final size:81
Alignment explanation
Indices: 376908--377341 Score: 342
Period size: 81 Copynumber: 5.4 Consensus size: 81
376898 TTATCAAAAA
* * * *
376908 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T----GAT
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGAT
376968 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * *
376984 GGTCAATACTGTATTTCACA-GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 GGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
** *
377048 -TCAGGACT-AACCTTACCAAAAA
64 ATCAGGACTGATTCTT--C----T
** * * *
377070 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGA
*
377129 TCAGGACTGATTTTTCTT
65 TCAGGACTGATTCTTC-T
* * * ***** * *
377147 GAAAGGTCAAGACTGTC-TTGAA-ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAA
1 ----GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
377210 AGATCAGGACTGATTCTTCT
62 AGATCAGGACTGATTCTTCT
* *
377230 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGAT
377295 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
**
377311 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTTCAAGGTCAGGACTGA
377342 TTATGGAAGG
Statistics
Matches: 281, Mismatches: 48, Indels: 53
0.74 0.13 0.14
Matches are distributed among these distances:
76 48 0.17
77 1 0.00
78 4 0.01
79 21 0.07
80 17 0.06
81 121 0.43
82 5 0.02
83 1 0.00
84 33 0.12
85 2 0.01
86 25 0.09
87 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (81 bp):
GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 376408 -- 376907
AAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTTTTTGA
AAGATAAATACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAATAAAGGTGAGGACTGTCTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 377342 -- 377841
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
Found at i:377481 original size:43 final size:42
Alignment explanation
Indices: 377418--377587 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
377408 TTGTATGTCA
* * * *
377418 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
377461 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * * *
377499 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
377537 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
377580 TCAGGACT
1 TCAGGACT
377588 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 9 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 49 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 376918 -- 377417
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 377588 -- 378087
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGAT
Found at i:377795 original size:19 final size:19
Alignment explanation
Indices: 377768--377838 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
377758 TATCAAAAAG
377768 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
377787 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
377810 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
377830 GTCAGGACT
1 GTCAAGACT
377839 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 377268 -- 377767
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 377839 -- 378338
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGAC
TGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTC
Found at i:377815 original size:43 final size:43
Alignment explanation
Indices: 377754--377867 Score: 210
Period size: 43 Copynumber: 2.7 Consensus size: 43
377744 ATTAGTACTC
*
377754 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
377797 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
*
377840 ACCTTACCAAAAAGGTCAAGACTGTCTT
1 ACCTTATCAAAAAGGTCAAGACTGTCTT
377868 GAAAGGTCAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
Left flanking sequence: Indices 377254 -- 377753
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 377868 -- 378367
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACT
Found at i:377820 original size:113 final size:116
Alignment explanation
Indices: 377575--377820 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
377565 GACTGTCTTG
*
377575 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
377639 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
377694 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
377758 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
377807 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
377821 TCTTTCACAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 377075 -- 377574
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 377821 -- 378320
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
AAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
Found at i:377874 original size:19 final size:19
Alignment explanation
Indices: 377850--377959 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
377840 ACCTTACCAA
377850 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377869 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
377889 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
377907 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
377931 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
377947 AAAGGTCAGGACT
1 AAAGGTCAAGACT
377960 AATGAGAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
16 13 0.18
17 6 0.08
19 33 0.46
21 4 0.06
24 16 0.22
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 377350 -- 377849
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 377960 -- 378459
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCA
CCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATG
Found at i:377877 original size:43 final size:42
Alignment explanation
Indices: 377754--378218 Score: 184
Period size: 43 Copynumber: 11.0 Consensus size: 42
377744 ATTAGTACTC
* * * *
377754 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTA
* * *
377797 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTA
377840 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACT-A
** *
377884 TTCTT--C----TGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACT-A
** ***
377922 TTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACTA
* ** * * * * * *
377961 A--TGAGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 ACCTTACCA--A---A--AA-G---GTCAAGACT-GTCTTGAAAG---TCAGGACTA
* * *
378015 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTA
* *
378058 ACCTTACCAAAAAGATCAAGACTATC-TG--A-TCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACT-A
** * * * *
378097 TTCTT--C----TGGTCAATACTGTCTTTCAAAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTA
* *
378134 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGTCAGGACTA
*
378177 ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
378219 TTTGATGGAA
Statistics
Matches: 328, Mismatches: 51, Indels: 86
0.71 0.11 0.18
Matches are distributed among these distances:
33 10 0.03
35 1 0.00
37 6 0.02
38 52 0.16
39 6 0.02
40 15 0.05
41 3 0.01
42 10 0.03
43 177 0.54
44 5 0.02
45 10 0.03
46 5 0.02
48 1 0.00
49 9 0.03
51 2 0.01
52 4 0.01
54 9 0.03
56 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGTCAGGACTA
Left flanking sequence: Indices 377254 -- 377753
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 378219 -- 378718
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTC
ACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAA
TTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCT
TGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGGTGCATTCAAAGTTGCGAGTGCTT
TGACATATGTCAGGTGAGTGCAATAGCTTCCCAACGCATGCATGATTGACTAGATATCGAGCTGA
CCCAGTAGGGAGGGGCCATATCTAGGAACCGCCAAGGTCTCGACC
Found at i:377904 original size:38 final size:38
Alignment explanation
Indices: 377853--377928 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
377843 TTACCAAAAA
377853 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
377891 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
377929 TGAAAGGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 377353 -- 377852
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 377929 -- 378428
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAA
Found at i:377950 original size:16 final size:16
Alignment explanation
Indices: 377929--377959 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
377919 TGATTCTTCT
377929 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
377945 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
377960 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 377429 -- 377928
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 377960 -- 378459
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCA
CCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATG
Found at i:378127 original size:19 final size:19
Alignment explanation
Indices: 378105--378175 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
378095 GATTCTTCTG
*
378105 GTCAATACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
378124 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
378147 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
378167 GTCAGGACT
1 GTCAAGACT
378176 AACCTGACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 16 0.39
20 6 0.15
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 377605 -- 378104
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 378176 -- 378675
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATT
AGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGAAAAGA
ATGAAGATCAATGACAATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTG
AGTCTGAATCAGCCCTACGGTGCATTCAAAGTTGCGAGTGCTTTGACATATGTCAGGTGAGTGCA
ATAGCTTCCCAACGCATGCATGATTGACTAGATATCGAGCTGACC
Found at i:378156 original size:24 final size:24
Alignment explanation
Indices: 378124--378200 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
378114 GTCTTTCAAA
*
378124 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
378148 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
378167 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
378191 GTCAAGACTG
1 GTCAAGACTG
378201 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 377624 -- 378123
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAA
Right flanking sequence: Indices 378201 -- 378700
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTTTCCATACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCAT
CAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGGTGCAT
TCAAAGTTGCGAGTGCTTTGACATATGTCAGGTGAGTGCAATAGCTTCCCAACGCATGCATGATT
GACTAGATATCGAGCTGACCCAGTAGGGAGGGGCCATATCTAGGA
Found at i:378382 original size:28 final size:28
Alignment explanation
Indices: 378350--378404 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
378340 TTGCAATTGT
*
378350 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTATACAAACAA
*
378378 ATGCCATTAGTACTCACTATACCAACA
1 ATGCCATTAGTACTCACTATACAAACA
378405 TGAGTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTATACAAACAA
Left flanking sequence: Indices 377850 -- 378349
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
TACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 378405 -- 378904
TGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCA
TACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAG
TTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGGTGCATTCAAAGTTG
CGAGTGCTTTGACATATGTCAGGTGAGTGCAATAGCTTCCCAACGCATGCATGATTGACTAGATA
TCGAGCTGACCCAGTAGGGAGGGGCCATATCTAGGAACCGCCAAGGTCTCGACCTACAGGGGTCA
GAACTGCCAGGGTCAAAACCCTGAACATCTGAAGATCAGAAGGACACGCCGGGCAGATGGAATGC
CTTATGTAGTTCAAAGGGCAATGGCAACAACCCCTGCTACGAAGGCTAGGGATACGCGAACAACT
CAGCCATTGACTAATGGCAGACCAATGCAAGACCTATCAGATTTC
Found at i:383232 original size:23 final size:24
Alignment explanation
Indices: 383206--383260 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 24
383196 CAATTGCAAT
*
383206 TATGGT-TGGCATACAATTTGTTG
1 TATGGTATGGCATACAATTTGTGG
383229 TATGGATAATGGCATACAATTTGTGG
1 TATGG-T-ATGGCATACAATTTGTGG
383255 TATGGT
1 TATGGT
383261 CAGCATGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 5 0.18
24 1 0.04
25 1 0.04
26 21 0.75
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.40
Consensus pattern (24 bp):
TATGGTATGGCATACAATTTGTGG
Left flanking sequence: Indices 382706 -- 383205
TAAAAATGAATGGGGCCTGTCCCTGCTCCGCCTAGAAGTTCTCTATCTCGAAAGCCGCCCTCATC
GGAAGCCCTACCCGGCCCTATAAGCCTTGATTCACACTAGGTCTTTCCACTCCAATCCGGATTCC
TGTCGAAAGACCTTCAGACTCGAAAGCCGAAGAAAGAGCCCAGAAGCTCAGAGGATAGTCTTGCC
TATCATAGGCCAGGGGGAGACTGAGGAACACTTGGCAAAGCTGTTCGAGAAGAAGCCCTCGCAAA
GCGAAGCAAGTCACGAGCAATCTTTGCGAGTGCTTTGTGGGCTTTGCTCGTCTGATAGTCAAAGC
ACTCGCTTTGTTTGCGTTAGGGAACTCGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTG
CTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTC
TTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAAT
Right flanking sequence: Indices 383261 -- 383760
CAGCATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAATGACATTTGTTTGTACAGTGAG
TACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
Found at i:383374 original size:24 final size:24
Alignment explanation
Indices: 383350--383434 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
383340 AATTGCAATG
*
383350 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
383374 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
383393 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
383417 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
383435 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 382850 -- 383349
CAGACTCGAAAGCCGAAGAAAGAGCCCAGAAGCTCAGAGGATAGTCTTGCCTATCATAGGCCAGG
GGGAGACTGAGGAACACTTGGCAAAGCTGTTCGAGAAGAAGCCCTCGCAAAGCGAAGCAAGTCAC
GAGCAATCTTTGCGAGTGCTTTGTGGGCTTTGCTCGTCTGATAGTCAAAGCACTCGCTTTGTTTG
CGTTAGGGAACTCGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAA
GTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTG
ATAGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTTGTATGGATAATG
GCATACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAAT
GACATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 383435 -- 383934
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCAT
Found at i:383401 original size:19 final size:19
Alignment explanation
Indices: 383374--383448 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
383364 AAGAAGAATG
383374 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
383393 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
383417 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
383436 AGTCTTGACCTTT
1 AGTCCTGACCTTT
383449 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 382874 -- 383373
CCCAGAAGCTCAGAGGATAGTCTTGCCTATCATAGGCCAGGGGGAGACTGAGGAACACTTGGCAA
AGCTGTTCGAGAAGAAGCCCTCGCAAAGCGAAGCAAGTCACGAGCAATCTTTGCGAGTGCTTTGT
GGGCTTTGCTCGTCTGATAGTCAAAGCACTCGCTTTGTTTGCGTTAGGGAACTCGCAAAGCGAAT
CGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCC
TCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAA
TTGCAATTATGGTTGGCATACAATTTGTTGTATGGATAATGGCATACAATTTGTGGTATGGTCAG
CATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAATGACATTTGTTTGTACAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 383449 -- 383948
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCA
Found at i:383421 original size:43 final size:43
Alignment explanation
Indices: 383350--383488 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 43
383340 AATTGCAATG
* *
383350 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
383393 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * ** *
383436 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGAC
383479 AGTCTTGACC
1 AGTCTTGACC
383489 AGAAGAATCA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 83 0.97
44 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 382850 -- 383349
CAGACTCGAAAGCCGAAGAAAGAGCCCAGAAGCTCAGAGGATAGTCTTGCCTATCATAGGCCAGG
GGGAGACTGAGGAACACTTGGCAAAGCTGTTCGAGAAGAAGCCCTCGCAAAGCGAAGCAAGTCAC
GAGCAATCTTTGCGAGTGCTTTGTGGGCTTTGCTCGTCTGATAGTCAAAGCACTCGCTTTGTTTG
CGTTAGGGAACTCGCAAAGCGAATCGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAA
GTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTG
ATAGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTTGTATGGATAATG
GCATACAATTTGTGGTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAAT
GACATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 383489 -- 383988
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCC
TTTCAATAAATTGCCATGAATCCTGACCTGTTTGGTATGGTGAGT
Found at i:383540 original size:76 final size:78
Alignment explanation
Indices: 383374--383564 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
383364 AAGAAGAATG
**
383374 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
383439 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
383460 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
383523 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
383536 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
383565 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 382874 -- 383373
CCCAGAAGCTCAGAGGATAGTCTTGCCTATCATAGGCCAGGGGGAGACTGAGGAACACTTGGCAA
AGCTGTTCGAGAAGAAGCCCTCGCAAAGCGAAGCAAGTCACGAGCAATCTTTGCGAGTGCTTTGT
GGGCTTTGCTCGTCTGATAGTCAAAGCACTCGCTTTGTTTGCGTTAGGGAACTCGCAAAGCGAAT
CGACAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCC
TCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAA
TTGCAATTATGGTTGGCATACAATTTGTTGTATGGATAATGGCATACAATTTGTGGTATGGTCAG
CATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAATGACATTTGTTTGTACAGTGAGTAC
TAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 383565 -- 384064
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCAATAAAT
TGCCATGAATCCTGACCTGTTTGGTATGGTGAGTACTGACTTTTCCATAATGAGTCCTGACCTTT
CATTTTGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAA
Found at i:383560 original size:43 final size:41
Alignment explanation
Indices: 383512--383608 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
383502 CTGATCAGAT
* * * *
383512 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
383555 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
383596 AGTCTTGACCTTT
1 AGTCTTGACCTTT
383609 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 383012 -- 383511
CTCGTCTGATAGTCAAAGCACTCGCTTTGTTTGCGTTAGGGAACTCGCAAAGCGAATCGACAAAG
CACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTC
AGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATT
ATGGTTGGCATACAATTTGTTGTATGGATAATGGCATACAATTTGTGGTATGGTCAGCATGAATT
TTGATGGACATACAATTTGTGGGAAGTACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 383609 -- 384108
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCA
TCACCTTTCCTTTCAATAAATTGCCATGAATCCTGACCTGTTTGGTATGGTGAGTACTGACTTTT
CCATAATGAGTCCTGACCTTTCATTTTGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTA
ATGACATTGAATTGCAATTAGTCCTGACCTTTCCATAAGGAAAGT
Found at i:383736 original size:43 final size:42
Alignment explanation
Indices: 383689--383841 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
383679 ACCTTTCAAG
383689 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
383732 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
383767 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
383808 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
383842 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 383189 -- 383688
TGGCATACAATTGCAATTATGGTTGGCATACAATTTGTTGTATGGATAATGGCATACAATTTGTG
GTATGGTCAGCATGAATTTTGATGGACATACAATTTGTGGGAAGTACTAATGACATTTGTTTGTA
CAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 383842 -- 384341
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCAATAAATTGCCATGAATCCTGACC
TGTTTGGTATGGTGAGTACTGACTTTTCCATAATGAGTCCTGACCTTTCATTTTGGTATGGTTAA
TGACATTTTGTTGTACAGTGAGTACTAATGACATTGAATTGCAATTAGTCCTGACCTTTCCATAA
GGAAAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
Found at i:383912 original size:16 final size:16
Alignment explanation
Indices: 383888--383918 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
383878 CATTCTCATT
383888 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
383904 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
383919 AGACAGTCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 383388 -- 383887
AAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 383919 -- 384418
AGACAGTCCTGTCCATCACCTTTCCTTTCAATAAATTGCCATGAATCCTGACCTGTTTGGTATGG
TGAGTACTGACTTTTCCATAATGAGTCCTGACCTTTCATTTTGGTATGGTTAATGACATTTTGTT
GTACAGTGAGTACTAATGACATTGAATTGCAATTAGTCCTGACCTTTCCATAAGGAAAGTACTAA
TGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
Found at i:384165 original size:28 final size:28
Alignment explanation
Indices: 384130--384236 Score: 198
Period size: 28 Copynumber: 3.8 Consensus size: 28
384120 ACAATTTTTG
384130 GTCAAGTGAGTACTAATGGCATTTGTTT
1 GTCAAGTGAGTACTAATGGCATTTGTTT
384158 GT-ACAGTGAGTACTAATGGCATTTGTTT
1 GTCA-AGTGAGTACTAATGGCATTTGTTT
384186 GTCAAGTGAGTACTAATGGCATTTGTTT
1 GTCAAGTGAGTACTAATGGCATTTGTTT
384214 GTCAAGTGAGTACTAATGGCATT
1 GTCAAGTGAGTACTAATGGCATT
384237 GAATTGCAAT
Statistics
Matches: 77, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
27 1 0.01
28 75 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.37
Consensus pattern (28 bp):
GTCAAGTGAGTACTAATGGCATTTGTTT
Left flanking sequence: Indices 383630 -- 384129
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCAATAAAT
TGCCATGAATCCTGACCTGTTTGGTATGGTGAGTACTGACTTTTCCATAATGAGTCCTGACCTTT
CATTTTGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTGAATTGCAATTAG
TCCTGACCTTTCCATAAGGAAAGTACTAATGGCATACAATTTTTG
Right flanking sequence: Indices 384237 -- 384736
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAA
Found at i:384272 original size:24 final size:24
Alignment explanation
Indices: 384244--384289 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
384234 ATTGAATTGC
384244 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
384268 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
384290 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 383744 -- 384243
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACC
TTTCCTTTCAATAAATTGCCATGAATCCTGACCTGTTTGGTATGGTGAGTACTGACTTTTCCATA
ATGAGTCCTGACCTTTCATTTTGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGAC
ATTGAATTGCAATTAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATACAATTTTTGGTCA
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 384290 -- 384789
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
Found at i:384398 original size:95 final size:99
Alignment explanation
Indices: 384205--384398 Score: 263
Period size: 99 Copynumber: 2.0 Consensus size: 99
384195 GTACTAATGG
* **
384205 CATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAA
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAA
384270 TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
66 -GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
* * * **
384305 CATTT-TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG-GTCCTGTCC-TTCCATCA-A
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTGACCTTTCAAGAAGA
384366 A-AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
65 AGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
384399 TTGGTAAGGT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
95 32 0.38
97 2 0.02
98 5 0.06
99 39 0.46
100 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (99 bp):
CATTTGTTGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAA
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Left flanking sequence: Indices 383705 -- 384204
TGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCAATAAATTGCCATGAAT
CCTGACCTGTTTGGTATGGTGAGTACTGACTTTTCCATAATGAGTCCTGACCTTTCATTTTGGTA
TGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTGAATTGCAATTAGTCCTGACCTT
TCCATAAGGAAAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGT
ACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
Right flanking sequence: Indices 384399 -- 384898
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTC
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
Found at i:384431 original size:43 final size:42
Alignment explanation
Indices: 384384--384536 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
384374 ACCTTTCAAG
384384 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
384427 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
384462 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
384503 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
384537 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 383884 -- 384383
CATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGTCCATCACCTTTCCTTTCA
ATAAATTGCCATGAATCCTGACCTGTTTGGTATGGTGAGTACTGACTTTTCCATAATGAGTCCTG
ACCTTTCATTTTGGTATGGTTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTGAATTGC
AATTAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATACAATTTTTGGTCAAGTGAGTACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 384537 -- 385036
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:384660 original size:24 final size:19
Alignment explanation
Indices: 384614--384689 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
384604 CTTCCATAAT
384614 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
384633 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
384656 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
384676 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
384690 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 384114 -- 384613
TGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 384690 -- 385189
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:384663 original size:43 final size:44
Alignment explanation
Indices: 384611--384852 Score: 171
Period size: 43 Copynumber: 5.9 Consensus size: 44
384601 GTCCTTCCAT
384611 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
***
384654 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
* **
384698 -GTCAGTCCTGACCTTGAAAGACAGTCTTGA-----CCAG-AAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
* * ***
384735 AATCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
* * * **
384774 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT-TTGATAAG
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCCAG-TAAG
* *
384817 -GTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCCA
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
384853 TTTTTGGTCA
Statistics
Matches: 157, Mismatches: 27, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
33 11 0.07
37 3 0.02
38 21 0.13
39 3 0.02
41 19 0.12
42 5 0.03
43 92 0.59
44 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
Left flanking sequence: Indices 384111 -- 384610
TAATGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 384853 -- 385352
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACT
TTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGC
Found at i:384728 original size:19 final size:19
Alignment explanation
Indices: 384614--384729 Score: 52
Period size: 19 Copynumber: 5.6 Consensus size: 19
384604 CTTCCATAAT
**
384614 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTGAAAGA
* *
384633 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACC-TT-GA-AAG-A
**
384656 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTGAAAGA
* * *
384676 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACC---TT-G-AAAGA
384700 CAGTCCTGACCTTGAAAGA
1 CAGTCCTGACCTTGAAAGA
*
384719 CAGTCTTGACC
1 CAGTCCTGACC
384730 AGAAGAATCA
Statistics
Matches: 72, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
19 33 0.46
20 4 0.06
21 5 0.07
22 5 0.07
23 3 0.04
24 22 0.31
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (19 bp):
CAGTCCTGACCTTGAAAGA
Left flanking sequence: Indices 384114 -- 384613
TGGCATACAATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 384730 -- 385229
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Done.