Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 11 of 20
Found at i:312021 original size:43 final size:42
Alignment explanation
Indices: 311851--312022 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
311841 TTGTATGTCA
* * *
311851 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * *
311894 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
311932 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
311970 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
312013 TCAGGACTGA
1 TCAGGACTGA
312023 TTCTTCTTGA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 53 0.54
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 311351 -- 311850
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTGGAAAGGTCAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 312023 -- 312522
TTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATA
CTTTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGC
Found at i:312064 original size:19 final size:19
Alignment explanation
Indices: 311989--312069 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 19
311979 ACCTTACCAA
* *
311989 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTCTTTTG
*
312008 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCA--A--GACTCTT-TTG
*
312032 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTCTTTTG
*
312051 AAAGGTCAAGACTCATTTG
1 AAAGGTCAAGACTCTTTTG
312070 TATGTCATCA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
19 28 0.56
20 6 0.12
21 1 0.02
23 4 0.08
24 11 0.22
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTCTTTTG
Left flanking sequence: Indices 311489 -- 311988
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCAT
TCTTCTGGAAAGGTCAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 312070 -- 312569
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAATACTTTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
Found at i:312117 original size:226 final size:226
Alignment explanation
Indices: 311830--312279 Score: 864
Period size: 226 Copynumber: 2.0 Consensus size: 226
311820 GGAATGACCA
311830 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
311895 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
311960 TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
131 TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
* *
312025 CTTCTTGAAAGGTCAGGACTCTTTTGAAAGG
196 CTTCTTGAAAGGTCAAGACTCTCTTGAAAGG
312056 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
312121 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
312186 TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
131 TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
* *
312251 TTTCTTGAAAGGTCAAGACTGTCTTGAAA
196 CTTCTTGAAAGGTCAAGACTCTCTTGAAA
312280 TCAGTACTGA
Statistics
Matches: 220, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
226 220 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (226 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTCTCTTGAAAGG
Left flanking sequence: Indices 311330 -- 311829
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTTCTTGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 312280 -- 312779
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTTTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAAT
GCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAA
AATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAA
TGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTG
Found at i:312142 original size:43 final size:42
Alignment explanation
Indices: 312077--312454 Score: 126
Period size: 43 Copynumber: 9.2 Consensus size: 42
312067 TTGTATGTCA
* * *
312077 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
312120 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
312158 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
312196 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
312239 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * ***** * * *
312280 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * * * *
312322 ATCAGGACTGATTCTT--C----TGGTCAATACTTTATTTCAAGG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
312361 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
312404 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
312447 TCAGGACT
1 TCAGGACT
312455 CATTCTTCTT
Statistics
Matches: 251, Mismatches: 59, Indels: 50
0.70 0.16 0.14
Matches are distributed among these distances:
33 10 0.04
35 1 0.00
37 8 0.03
38 33 0.13
39 12 0.05
41 36 0.14
42 8 0.03
43 137 0.55
44 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 311577 -- 312076
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTT
CTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 312455 -- 312954
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATT
TGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTG
CAATTATGGACACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAA
TTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAAT
TAGCTTATAATTGAATGGCATTATTCAGGCAAAATGATATGCACT
Found at i:312239 original size:19 final size:19
Alignment explanation
Indices: 312215--312454 Score: 83
Period size: 19 Copynumber: 11.7 Consensus size: 19
312205 ACCTTACCAA
312215 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
312234 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
312258 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
312277 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
312299 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
312318 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * * * *
312338 -CTGGTCAATACTTTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
312356 CAAGGTCAGGACTGACCTTACCA
1 AAAGGTCAAGACTG-TCTT---G
312379 AAAAGGTCAAGACTGTCTTG
1 AAA-GGTCAAGACTGTCTTG
*
312399 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
312423 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
312442 AAAGGTCAGGACT
1 AAAGGTCAAGACT
312455 CATTCTTCTT
Statistics
Matches: 165, Mismatches: 30, Indels: 52
0.67 0.12 0.21
Matches are distributed among these distances:
17 6 0.04
19 82 0.50
20 7 0.04
21 6 0.04
22 10 0.06
23 5 0.03
24 49 0.30
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 311715 -- 312214
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 312455 -- 312954
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATT
TGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTG
CAATTATGGACACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAA
TTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAAT
TAGCTTATAATTGAATGGCATTATTCAGGCAAAATGATATGCACT
Found at i:312423 original size:24 final size:24
Alignment explanation
Indices: 312394--312478 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
312384 GTCAAGACTG
312394 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
312418 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
312437 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
312461 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
312479 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 311894 -- 312393
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TTTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 312479 -- 312978
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATC
CATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGC
ATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGACACTAATGGCAATT
GTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCT
GACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTTATAATTGAATGGCATTAT
TCAGGCAAAATGATATGCACTTTTTTTGGTTAATTCTTTCAACCA
Found at i:312460 original size:43 final size:43
Alignment explanation
Indices: 312215--312478 Score: 287
Period size: 43 Copynumber: 6.3 Consensus size: 43
312205 ACCTTACCAA
*
312215 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
312258 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTG
* * *
312299 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * ** * ***
312340 ---GGTCAATACTTTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
312380 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
312423 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
312466 AAAGGTCAGGACT
1 AAAGGTCAAGACT
312479 CATTGCAATT
Statistics
Matches: 184, Mismatches: 24, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
37 3 0.02
38 25 0.14
41 34 0.18
42 5 0.03
43 114 0.62
44 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 311715 -- 312214
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 312479 -- 312978
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATC
CATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGC
ATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGACACTAATGGCAATT
GTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCT
GACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTTATAATTGAATGGCATTAT
TCAGGCAAAATGATATGCACTTTTTTTGGTTAATTCTTTCAACCA
Found at i:312522 original size:28 final size:28
Alignment explanation
Indices: 312490--312616 Score: 238
Period size: 28 Copynumber: 4.5 Consensus size: 28
312480 ATTGCAATTC
312490 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
312518 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
312546 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
312574 AATGCCATTAGTACTCACTGTG-CAAACA
1 AATGCCATTAGTACTCACT-TGACAAACA
312602 AATGCCATTAGTACT
1 AATGCCATTAGTACT
312617 TTCCATATGC
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
28 96 0.98
29 2 0.02
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 311990 -- 312489
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTTTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 312617 -- 313116
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAA
TTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATT
TGTTGTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGACACTAATGGCAATTGTATGCCA
TTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCA
CATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTTATAATTGAATGGCATTATTCAGGCAA
AATGATATGCACTTTTTTTGGTTAATTCTTTCAACCAACAGAAAATCTTTTGTGAGCTCATGGAA
AGGAAAAGAGAAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCAAAG
CTTTGGCTTTGCCTATCAGAGAATTCATGGAAAGGTTCTTGAAAG
Found at i:312560 original size:56 final size:56
Alignment explanation
Indices: 312490--312660 Score: 243
Period size: 56 Copynumber: 3.2 Consensus size: 56
312480 ATTGCAATTC
312490 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTG-CAAACA
312546 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
* *
312602 AATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
*
312650 AATGTCATTAG
1 AATGCCATTAG
312661 CCATACCAAA
Statistics
Matches: 111, Mismatches: 3, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
48 38 0.34
51 1 0.01
53 2 0.02
56 68 0.61
57 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (56 bp):
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
Left flanking sequence: Indices 311990 -- 312489
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTTTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 312661 -- 313160
CCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGT
CAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGAC
ACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTA
TGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTTATAAT
TGAATGGCATTATTCAGGCAAAATGATATGCACTTTTTTTGGTTAATTCTTTCAACCAACAGAAA
ATCTTTTGTGAGCTCATGGAAAGGAAAAGAGAAATGGCAATTGTATGCCATTAGTGTTTCCACAA
ATCATAAGCACACTCGCAAAGCTTTGGCTTTGCCTATCAGAGAATTCATGGAAAGGTTCTTGAAA
GGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAG
Found at i:312756 original size:32 final size:32
Alignment explanation
Indices: 312710--312772 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
312700 CATCTCATTG
312710 CAATTTGTGATATGGTCAGCACT-AATGGCATA
1 CAATTTGTGATATGGTCAGCA-TGAATGGCATA
312742 CAATTTGTTG-TATGGTCAGCATGAATGGCAT
1 CAATTTG-TGATATGGTCAGCATGAATGGCAT
312773 CTAATTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 1 0.03
32 26 0.90
33 2 0.07
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (32 bp):
CAATTTGTGATATGGTCAGCATGAATGGCATA
Left flanking sequence: Indices 312210 -- 312709
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAATACTTTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAA
CAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCAT
ACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTG
Right flanking sequence: Indices 312773 -- 313272
CTAATTGCAATTATGGACACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCT
TCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTG
TCCTAATTAGCTTATAATTGAATGGCATTATTCAGGCAAAATGATATGCACTTTTTTTGGTTAAT
TCTTTCAACCAACAGAAAATCTTTTGTGAGCTCATGGAAAGGAAAAGAGAAATGGCAATTGTATG
CCATTAGTGTTTCCACAAATCATAAGCACACTCGCAAAGCTTTGGCTTTGCCTATCAGAGAATTC
ATGGAAAGGTTCTTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGA
AAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
Found at i:313270 original size:43 final size:42
Alignment explanation
Indices: 313207--313376 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
313197 TTGTATGTCA
* * *
313207 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
313250 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
313288 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
313326 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
313369 TCAGGACT
1 TCAGGACT
313377 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 312707 -- 313206
TTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCA
TCTAATTGCAATTATGGACACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCC
TTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTT
GTCCTAATTAGCTTATAATTGAATGGCATTATTCAGGCAAAATGATATGCACTTTTTTTGGTTAA
TTCTTTCAACCAACAGAAAATCTTTTGTGAGCTCATGGAAAGGAAAAGAGAAATGGCAATTGTAT
GCCATTAGTGTTTCCACAAATCATAAGCACACTCGCAAAGCTTTGGCTTTGCCTATCAGAGAATT
CATGGAAAGGTTCTTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 313377 -- 313876
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGC
TATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACC
AAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTC
Found at i:313355 original size:76 final size:78
Alignment explanation
Indices: 313228--313620 Score: 262
Period size: 76 Copynumber: 4.8 Consensus size: 78
313218 CTTATCAAAA
* * *
313228 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCA
1 AGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAATCA
313291 GGACTGATTCTTC
66 GGACTGATTCTTC
* * *
313304 TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTG-AA--
* * **
313369 TCAGGACT-TTTGATGGA
63 TCAGGACTGATT-CT-TC
* * * * * * *
313386 AGGACAGGACCAATTGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
1 AGGTCAAGA-C---TG-TATT-TCA---CAGTCAGGACTAACCTTACC---AA---AAAGGTCAA
* * *
313449 GACTGTCTTGAAATCAGTACTGACCTT-ATC
51 GACTATCTTG-AATCAGGACTGA--TTCTTC
* * *
313479 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-
1 ----AGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGA
313542 ATCAGGACTGATTCTTC
62 ATCAGGACTGATTCTTC
* *
313559 TGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAA
313621 AGGTCAGGAC
Statistics
Matches: 242, Mismatches: 41, Indels: 66
0.69 0.12 0.19
Matches are distributed among these distances:
76 103 0.43
77 4 0.02
78 1 0.00
79 3 0.01
80 4 0.02
81 19 0.08
82 6 0.02
83 3 0.01
84 14 0.06
86 2 0.01
87 6 0.02
88 1 0.00
89 14 0.06
90 15 0.06
91 1 0.00
92 5 0.02
93 9 0.04
95 22 0.09
96 3 0.01
97 7 0.03
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (78 bp):
AGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAATCA
GGACTGATTCTTC
Left flanking sequence: Indices 312728 -- 313227
GCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGACAC
TAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATG
CCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTTATAATTG
AATGGCATTATTCAGGCAAAATGATATGCACTTTTTTTGGTTAATTCTTTCAACCAACAGAAAAT
CTTTTGTGAGCTCATGGAAAGGAAAAGAGAAATGGCAATTGTATGCCATTAGTGTTTCCACAAAT
CATAAGCACACTCGCAAAGCTTTGGCTTTGCCTATCAGAGAATTCATGGAAAGGTTCTTGAAAGG
TCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 313621 -- 314120
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTGCAATTGTATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAAT
GAGTACTCACCATACCAAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCAT
CAGTACTCACCATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCAATGC
Found at i:313486 original size:41 final size:43
Alignment explanation
Indices: 313440--313631 Score: 151
Period size: 43 Copynumber: 4.7 Consensus size: 43
313430 CCAAAAATGG
* * * *
313440 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
313481 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
313524 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * *
313559 --TGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
313600 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
313632 TTTGATGGAA
Statistics
Matches: 116, Mismatches: 20, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 6 0.05
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.44
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 312940 -- 313439
AAAATGATATGCACTTTTTTTGGTTAATTCTTTCAACCAACAGAAAATCTTTTGTGAGCTCATGG
AAAGGAAAAGAGAAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCAA
AGCTTTGGCTTTGCCTATCAGAGAATTCATGGAAAGGTTCTTGAAAGGTCAGGACTCTCTGGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 313632 -- 314131
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTG
TATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACC
ATACCAAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCA
TACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCAT
ACCAAACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
Found at i:313657 original size:255 final size:255
Alignment explanation
Indices: 313206--313716 Score: 1004
Period size: 255 Copynumber: 2.0 Consensus size: 255
313196 TTTGTATGTC
313206 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
313271 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
313336 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
313401 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
*
313461 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
313526 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
313591 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
313656 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
313716 A
1 A
313717 GGTCAGGACT
Statistics
Matches: 254, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 254 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (255 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
Left flanking sequence: Indices 312706 -- 313205
ATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGC
ATCTAATTGCAATTATGGACACTAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGC
CTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTT
TGTCCTAATTAGCTTATAATTGAATGGCATTATTCAGGCAAAATGATATGCACTTTTTTTGGTTA
ATTCTTTCAACCAACAGAAAATCTTTTGTGAGCTCATGGAAAGGAAAAGAGAAATGGCAATTGTA
TGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCAAAGCTTTGGCTTTGCCTATCAGAGAAT
TCATGGAAAGGTTCTTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTC
Right flanking sequence: Indices 313717 -- 314216
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCTATTAGTACTCACTT
GACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGAC
TTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACT
TTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTG
TCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
TTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
Found at i:313738 original size:24 final size:24
Alignment explanation
Indices: 313709--313754 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
313699 GTCAAGACTG
313709 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
313733 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
313755 GCAATTGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 313209 -- 313708
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 313755 -- 314254
GCAATTGTATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGT
ACTCACCATACCAAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGT
ACTCACCATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCATACCAAACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGC
Found at i:313778 original size:99 final size:95
Alignment explanation
Indices: 313600--313784 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 95
313590 ACCTTACCAA
* *
313600 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTCATGAAAGGACAGGACCAATTGCAATTGTA
313665 TGCCATTAGTACTCACCTGACCAAAAATGG
66 TGCCATTAGTACTCACCTGACCAAAAATGG
* *
313695 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC-ATTGCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGA--C-TT-TTCATGAAAGGACAGGAC-CAATTGCAA
* *
313759 TTGTATGCTATTAGTACTCACTTGAC
61 TTGTATGCCATTAGTACTCACCTGAC
313785 AACAAATTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
95 30 0.38
97 1 0.01
98 2 0.03
99 45 0.57
100 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (95 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTCATGAAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCAAAAATGG
Left flanking sequence: Indices 313100 -- 313599
GGAAAGGTTCTTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 313785 -- 314284
AACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTTT
CTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTTTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTGTCT
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTG
CAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAAT
GCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACC
ATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCC
Found at i:313873 original size:16 final size:16
Alignment explanation
Indices: 313852--313882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
313842 AGGACTTTCT
313852 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
313868 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
313883 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 313352 -- 313851
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTGTATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCC
ATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTTTCT
Right flanking sequence: Indices 313883 -- 314382
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGG
CAATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACAAAAAATCTG
AAGCACACTCGCAAAGCTTTGGCTTCCCTTGAGTCAAAGCACTCG
Found at i:314026 original size:64 final size:64
Alignment explanation
Indices: 313925--314104 Score: 288
Period size: 64 Copynumber: 2.8 Consensus size: 64
313915 CCTTACCATA
* * * *
313925 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTTTTTTGAAAGGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTGTCTGGAAAGGT
* *
313989 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTGTCTGGAAAGGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTGTCTGGAAAGGT
* *
314053 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACT
314105 CATTGCAATT
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 110 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (64 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATCAAGACTGTCTGGAAAGGT
Left flanking sequence: Indices 313425 -- 313924
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAA
TGAGTACTCACCATACCAAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATA
Right flanking sequence: Indices 314105 -- 314604
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTAC
TCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACA
AATTGTATGCCATTAGTGCTGACCATACAAAAAATCTGAAGCACACTCGCAAAGCTTTGGCTTCC
CTTGAGTCAAAGCACTCGCAACTTTGAATTGCTGAAGCTTCTGAATGGAATTGCTGAAGCTGATG
AAGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCAT
ACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTAT
GGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACC
Found at i:314227 original size:28 final size:28
Alignment explanation
Indices: 314116--314218 Score: 190
Period size: 28 Copynumber: 3.7 Consensus size: 28
314106 ATTGCAATTC
314116 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
314144 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
314172 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
314200 AATGCCATTAGTACTCACT
1 AATGCCATTAGTACTCACT
314219 ATACCAACAT
Statistics
Matches: 73, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
27 2 0.03
28 71 0.97
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 313616 -- 314115
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCATTGCAATTGTATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCA
ACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 314219 -- 314718
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACAAAAAATCTGAAGCACACTCG
CAAAGCTTTGGCTTCCCTTGAGTCAAAGCACTCGCAACTTTGAATTGCTGAAGCTTCTGAATGGA
ATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAG
TCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCT
GAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCATAC
CAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCAC
TTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGA
Found at i:314431 original size:22 final size:22
Alignment explanation
Indices: 314390--314431 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
314380 TCGCAACTTT
**
314390 GAATTGCTGAAGCTTCTGAATG
1 GAATTGCTGAAGCTGATGAATG
314412 GAATTGCTGAAGCTGATGAA
1 GAATTGCTGAAGCTGATGAA
314432 GTGATTCAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.29
Consensus pattern (22 bp):
GAATTGCTGAAGCTGATGAATG
Left flanking sequence: Indices 313890 -- 314389
ATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCATACCAAACAGATGAAGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAACAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACT
CACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGT
ATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACAAAAAATCTGAAGCACA
CTCGCAAAGCTTTGGCTTCCCTTGAGTCAAAGCACTCGCAACTTT
Right flanking sequence: Indices 314432 -- 314931
GTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATAC
AATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGG
AAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTG
GTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGA
CCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCA
AGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTTTTTGGTATGGTGA
GTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATT
GCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
Found at i:314917 original size:24 final size:24
Alignment explanation
Indices: 314889--314934 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
314879 ATACAATTGC
314889 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
314913 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
314935 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 314389 -- 314888
TGAATTGCTGAAGCTTCTGAATGGAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGC
CTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCA
GCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAAT
TGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCA
TTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGT
CAGGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAAAAGGTCAGGACTTTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAAT
GGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGC
Right flanking sequence: Indices 314935 -- 315434
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:315076 original size:43 final size:41
Alignment explanation
Indices: 315026--315203 Score: 140
Period size: 43 Copynumber: 4.4 Consensus size: 41
315016 CTGACCTTTC
*
315026 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-T-TGA
* * *
315069 AATACAGTCTTGACC-----AG-AAGAATCAGTCCTGA-T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGATTGA
* * * *
315102 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-T-TGA
* * **
315145 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGATTGA
315186 AAGACAGTCTTGACCTTT
1 AAGACAGTCTTGACCTTT
315204 CCATTTTTGG
Statistics
Matches: 104, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 3 0.03
38 20 0.19
39 3 0.03
41 20 0.19
42 1 0.01
43 45 0.43
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (41 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGATTGA
Left flanking sequence: Indices 314526 -- 315025
TCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGT
CATTAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAAT
TTGTGATATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACT
CATTTCTTGAAAGGTGAGGACTTTCTGGAAAGATCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGGTCAGGACTTTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATAT
AATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 315204 -- 315703
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCT
TTCAATAATGAGTCCTTCCATAATTGTGCAATTATGGAAGGCATACAATTGCCATTGGGAGCACT
AATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTC
CAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGA
Found at i:315331 original size:43 final size:42
Alignment explanation
Indices: 315284--315436 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
315274 ACCTTTCAAG
315284 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
315327 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
315362 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
315403 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
315437 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 314784 -- 315283
ACCATACCAAAAAGGTCAGGACTTTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCAT
ATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 315437 -- 315936
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAATGAGTCCTTCCATAATTGTGCAATTATGGA
AGGCATACAATTGCCATTGGGAGCACTAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCAT
AAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCA
ACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCGCTTT
GCGAGTGCTTTGATCAGCCAAAGAGCCTTCTTCTAACTAGGAGAGTAAGCAAGCTACCGGAAGCG
AAGCGCTCCCCCCTTGGGAGCGTTTTCTTCCTCCTTTTCGTTCTACTTAGGTGGAGCAATCAAAC
TCTATCTCGACAGAATAGAATAGAAAAGAGGGCTGCAGGCCTGTG
Found at i:315378 original size:255 final size:255
Alignment explanation
Indices: 314927--315437 Score: 995
Period size: 255 Copynumber: 2.0 Consensus size: 255
314917 AGTCCTGACC
314927 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
*
314992 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
315057 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
315122 GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
196 GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
315182 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
315247 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
315312 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
* *
315377 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
196 GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
315437 T
1 T
315438 GACATACAAA
Statistics
Matches: 253, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 253 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (255 bp):
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 314427 -- 314926
ATGAAGTGATTCAGGTCAGAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGG
CATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCT
TATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCA
AATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTTGTCAGGATTTG
TCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTCTGGAAA
GATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTTTTTGGTAT
GGTGAGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATA
CAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 315438 -- 315937
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTC
CTGACCTTTCCAGAGAGTCCTGACCTTTCAATAATGAGTCCTTCCATAATTGTGCAATTATGGAA
GGCATACAATTGCCATTGGGAGCACTAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATA
AGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAA
CTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTG
CGAGTGCTTTGATCAGCCAAAGAGCCTTCTTCTAACTAGGAGAGTAAGCAAGCTACCGGAAGCGA
AGCGCTCCCCCCTTGGGAGCGTTTTCTTCCTCCTTTTCGTTCTACTTAGGTGGAGCAATCAAACT
CTATCTCGACAGAATAGAATAGAAAAGAGGGCTGCAGGCCTGTGT
Found at i:315543 original size:21 final size:19
Alignment explanation
Indices: 315499--315544 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
315489 CATTCTCATT
* *
315499 AGTCCTGACCTTTCCAGAG
1 AGTCCTGACCTTTCAAAAG
315518 AGTCCTGACCTTTCAATAATG
1 AGTCCTGACCTTTCAA-AA-G
315539 AGTCCT
1 AGTCCT
315545 TCCATAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
20 1 0.04
21 7 0.30
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 314999 -- 315498
TCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 315545 -- 316044
TCCATAATTGTGCAATTATGGAAGGCATACAATTGCCATTGGGAGCACTAATGGCAATTGTATGC
CATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAA
GCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCT
CGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGATCAGCCAAAGAGCCTTCTTCTAACTAGGAG
AGTAAGCAAGCTACCGGAAGCGAAGCGCTCCCCCCTTGGGAGCGTTTTCTTCCTCCTTTTCGTTC
TACTTAGGTGGAGCAATCAAACTCTATCTCGACAGAATAGAATAGAAAAGAGGGCTGCAGGCCTG
TGTAGACACCTCAACGACAAAATGTGGACACTCCCCGAGGACAATCTTTCAAATACACAGACAGA
AAGACCCGTTTTTCTTTTCTTTGCTGATTCCTAAAAATGCCATTT
Found at i:320542 original size:32 final size:32
Alignment explanation
Indices: 320501--320606 Score: 107
Period size: 32 Copynumber: 3.4 Consensus size: 32
320491 TTCAATGACA
320501 CACTAATGGCATACAATTGGTTGTATGGTCAG
1 CACTAATGGCATACAATTGGTTGTATGGTCAG
*
320533 CACTAATGGCAT-CTAATTGCAATT-TATGG--A-
1 CACTAATGGCATAC-AATTG--GTTGTATGGTCAG
* *
320563 CACTAATGGCATACAATTTGTGGTATGGTCAG
1 CACTAATGGCATACAATTGGTTGTATGGTCAG
320595 CA-TGAATGGCAT
1 CACT-AATGGCAT
320607 CTTTTTGGTA
Statistics
Matches: 61, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
28 1 0.02
29 5 0.08
30 16 0.26
31 5 0.08
32 27 0.44
33 5 0.08
34 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (32 bp):
CACTAATGGCATACAATTGGTTGTATGGTCAG
Left flanking sequence: Indices 320001 -- 320500
CAGGACCACTAGGGGATTGGCTCCGGGTGTAGGGTCAAATCTGCAGGGTCATGCAAATACATAGG
CCCCTTCCCTTCTGCCGAGTTTTTCAGAAGGCGCTTTCCGTTCTACGGTCCCTCAGAGCGAAGGG
TGTGGCAGGTAGTACGGGCCCTCTGACTTCCAGCGTTGTGCTGTGCGGCTCCCGCGAAGCGAATG
AAGGGAAGCTCGAAGCTTGGAAAGCCGATGACCGCTAGGCTGATGTAGTGGTCGGCCTTATAAAG
CTCGCTAAGCTTCGCCCCCCCTGACAGTGGTAGTCGGCATGACACTTCTATAAGCGACTTGTCGA
GCTTTCTCATGCTTTGCTTCTTGGTTTCGTAGTGCTATATGAGGACCCTTCATTCCTAATGCCTA
GCCGCCCTACACCAAAGTCGATCTTTGAGGCTGATTCAGATCACTCTGATAGTGTCAGGACATCA
TCATCAAGGAAGGAGAAATTTGAATTGTCTTTCTCTTCAATGACA
Right flanking sequence: Indices 320607 -- 321106
CTTTTTGGTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTT
GCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATTAGTCCTGACCT
TTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
Found at i:320744 original size:28 final size:28
Alignment explanation
Indices: 320618--320747 Score: 201
Period size: 28 Copynumber: 4.6 Consensus size: 28
320608 TTTTTGGTAT
* *
320618 AGTGAATACTAATGACATTTTGTTGT-A
1 AGTGAGTACTAATGGCATTTTGTTGTCA
*
320645 CAGTGAGTACTAATGACATTTTGTTGTCA
1 -AGTGAGTACTAATGGCATTTTGTTGTCA
320674 AGTGAGTACTAATGGCATTTTGTTGTCA
1 AGTGAGTACTAATGGCATTTTGTTGTCA
320702 AGTGAGTACTAATGGCA-TTTGTTTGTCA
1 AGTGAGTACTAATGGCATTTTG-TTGTCA
320730 AGTGAGTACTAATGGCAT
1 AGTGAGTACTAATGGCAT
320748 ACAATTGTCA
Statistics
Matches: 97, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
27 4 0.04
28 92 0.95
29 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (28 bp):
AGTGAGTACTAATGGCATTTTGTTGTCA
Left flanking sequence: Indices 320118 -- 320617
TCAGAGCGAAGGGTGTGGCAGGTAGTACGGGCCCTCTGACTTCCAGCGTTGTGCTGTGCGGCTCC
CGCGAAGCGAATGAAGGGAAGCTCGAAGCTTGGAAAGCCGATGACCGCTAGGCTGATGTAGTGGT
CGGCCTTATAAAGCTCGCTAAGCTTCGCCCCCCCTGACAGTGGTAGTCGGCATGACACTTCTATA
AGCGACTTGTCGAGCTTTCTCATGCTTTGCTTCTTGGTTTCGTAGTGCTATATGAGGACCCTTCA
TTCCTAATGCCTAGCCGCCCTACACCAAAGTCGATCTTTGAGGCTGATTCAGATCACTCTGATAG
TGTCAGGACATCATCATCAAGGAAGGAGAAATTTGAATTGTCTTTCTCTTCAATGACACACTAAT
GGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTAATTGCAATTTATGGACACTAATGGC
ATACAATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTAT
Right flanking sequence: Indices 320748 -- 321247
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGT
ACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
Found at i:320865 original size:43 final size:43
Alignment explanation
Indices: 320817--320898 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
320807 CTGATCTTTC
* * *
320817 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
320860 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
320899 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 320317 -- 320816
ACTTGTCGAGCTTTCTCATGCTTTGCTTCTTGGTTTCGTAGTGCTATATGAGGACCCTTCATTCC
TAATGCCTAGCCGCCCTACACCAAAGTCGATCTTTGAGGCTGATTCAGATCACTCTGATAGTGTC
AGGACATCATCATCAAGGAAGGAGAAATTTGAATTGTCTTTCTCTTCAATGACACACTAATGGCA
TACAATTGGTTGTATGGTCAGCACTAATGGCATCTAATTGCAATTTATGGACACTAATGGCATAC
AATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTGGTATAGTGAATACTAATGACATTTTGTT
GTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 320899 -- 321398
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACC
TTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTA
CTAATGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAA
TGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTC
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAG
Found at i:320940 original size:16 final size:17
Alignment explanation
Indices: 320919--320967 Score: 73
Period size: 19 Copynumber: 2.8 Consensus size: 17
320909 CATTCTCATT
320919 AGTCCTGACCTTTC-AG
1 AGTCCTGACCTTTCAAG
320935 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTC--AAG
320954 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
320968 CATAAGGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 14 0.47
19 16 0.53
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (17 bp):
AGTCCTGACCTTTCAAG
Left flanking sequence: Indices 320419 -- 320918
GGCTGATTCAGATCACTCTGATAGTGTCAGGACATCATCATCAAGGAAGGAGAAATTTGAATTGT
CTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTAA
TTGCAATTTATGGACACTAATGGCATACAATTTGTGGTATGGTCAGCATGAATGGCATCTTTTTG
GTATAGTGAATACTAATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 320968 -- 321467
CATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAA
TGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAG
TCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
Found at i:321153 original size:16 final size:16
Alignment explanation
Indices: 321128--321158 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
321118 TCATTCTCAT
321128 TAGTCCTGACCTTTCA
1 TAGTCCTGACCTTTCA
*
321144 TAGTCTTGACCTTTC
1 TAGTCCTGACCTTTC
321159 CAGAAGAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (16 bp):
TAGTCCTGACCTTTCA
Left flanking sequence: Indices 320628 -- 321127
AATGACATTTTGTTGTACAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATT
TTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCA
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAA
GAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCA
TATGGAAAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGA
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCAT
Right flanking sequence: Indices 321159 -- 321658
CAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGA
AAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Found at i:321196 original size:19 final size:21
Alignment explanation
Indices: 321145--321238 Score: 83
Period size: 19 Copynumber: 4.6 Consensus size: 21
321135 GACCTTTCAT
321145 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAGAATC
*
321169 AGTCCTGACCTTTCAAG-A-C
1 AGTCTTGACCTTTCAAGAATC
**
321188 AGTCTTGACC--AGAAGAATC
1 AGTCTTGACCTTTCAAGAATC
*
321207 AGTCCTGACCTTTCAAG-A-C
1 AGTCTTGACCTTTCAAGAATC
321226 AGTCTTGACCTTT
1 AGTCTTGACCTTT
321239 TTGGTCAGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
17 3 0.05
18 1 0.02
19 33 0.57
20 2 0.03
21 6 0.10
23 1 0.02
24 12 0.21
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (21 bp):
AGTCTTGACCTTTCAAGAATC
Left flanking sequence: Indices 320645 -- 321144
CAGTGAGTACTAATGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCA
AAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCCA
TAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATG
GCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAT
Right flanking sequence: Indices 321239 -- 321738
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCTT
TCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATT
TGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Found at i:321209 original size:38 final size:38
Alignment explanation
Indices: 321158--321235 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
321148 CTTGACCTTT
321158 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
321196 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
321234 CC
1 CC
321236 TTTTTGGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (38 bp):
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
Left flanking sequence: Indices 320658 -- 321157
TGACATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCAT
TAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACT
AATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCA
ATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTT
Right flanking sequence: Indices 321236 -- 321735
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGAT
CTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATA
ATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
Found at i:321268 original size:43 final size:43
Alignment explanation
Indices: 321205--321334 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
321195 ACCAGAAGAA
* * *
321205 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
*
321248 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
*
321291 TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
321334 T
1 T
321335 GAGTACTAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.05
43 76 0.95
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 320705 -- 321204
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACC
TTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCT
TTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 321335 -- 321834
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
Found at i:321296 original size:24 final size:24
Alignment explanation
Indices: 321225--321334 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 24
321215 CCTTTCAAGA
* *
321225 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
321249 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
321268 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
321292 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
321311 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
321335 GAGTACTAAT
Statistics
Matches: 62, Mismatches: 14, Indels: 20
0.65 0.15 0.21
Matches are distributed among these distances:
19 17 0.27
20 5 0.08
21 8 0.13
22 9 0.15
23 6 0.10
24 17 0.27
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 320725 -- 321224
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAA
TGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAAT
TAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 321335 -- 321834
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
Found at i:321434 original size:43 final size:42
Alignment explanation
Indices: 321381--321521 Score: 114
Period size: 43 Copynumber: 3.4 Consensus size: 42
321371 CTTCCATAAT
* *
321381 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGA
*** * *
321424 CAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTTGAAAGA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACTTT-CAAGA
*
321467 CAGTATTGA-C---C-AGAAGAATCAGTCCTGATCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGA
* *
321505 TAGTCTTGATCTTTCAA
1 CAGTCTTGACCTTTCAA
321522 AAAAGGTGAG
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
37 3 0.04
38 22 0.29
39 5 0.07
42 6 0.08
43 36 0.48
44 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (42 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTTTCAAGA
Left flanking sequence: Indices 320881 -- 321380
ATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCT
TTCAAAAGAGTCCTGACCTTTCCATAAGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACT
AATGGCATATGGAAAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 321522 -- 322021
AAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAG
CATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC
Found at i:321626 original size:24 final size:24
Alignment explanation
Indices: 321598--321643 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
321588 ATACAATTGC
321598 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
321622 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
321644 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 321098 -- 321597
TCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCAGAAGAATCA
GTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAAT
GGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGC
Right flanking sequence: Indices 321644 -- 322143
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGA
Found at i:321698 original size:99 final size:95
Alignment explanation
Indices: 321568--321752 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 95
321558 ATAATTTGTT
321568 GTCAAGTGAGTACTAATAGCATACAATTGCAA-TGAGTCCTGACCTTTCAAGAAGAATGAGTCCT
1 GTCAAGTGAGTACTAATAGCATACAATTGCAATTG-GTCCTGACC-TTCAAGAA-AA--AGTCCT
321632 GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
61 GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
* * * * **
321667 GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
1 GTCAAGTGAGTACTAATAGCATACAATTGCAATTGGTCCTGACCTTCAAGAAAAAGTCCTGACCT
*
321732 TTCAAGACAGTCTTGATCTTT
66 TTCAAGACAGTCTTGACCTTT
321753 TTGGTCAGGT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
95 31 0.40
97 2 0.03
98 5 0.06
99 38 0.49
100 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (95 bp):
GTCAAGTGAGTACTAATAGCATACAATTGCAATTGGTCCTGACCTTCAAGAAAAAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCCATTTTTG
Left flanking sequence: Indices 321068 -- 321567
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCATAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAA
AAAGGTGAGTACTCATTGTTGATGGAAAATGGCATATAATTTGTT
Right flanking sequence: Indices 321753 -- 322252
TTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTC
TTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
Found at i:321782 original size:43 final size:43
Alignment explanation
Indices: 321735--321890 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 43
321725 CTGACCTTTC
*
321735 AAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
** *
321778 AAGACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * *
321811 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * * *
321854 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
321891 TGACATACAA
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
33 11 0.13
34 1 0.01
35 1 0.01
37 2 0.02
38 21 0.25
39 3 0.04
41 1 0.01
42 1 0.01
43 44 0.52
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 321235 -- 321734
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGT
CCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGA
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTCATTGTTGATGGAAAATGGCATAT
AATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 321891 -- 322390
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATTAGTCTTGATGGTCATTCCTCA
Found at i:321996 original size:19 final size:19
Alignment explanation
Indices: 321968--322251 Score: 135
Period size: 19 Copynumber: 13.7 Consensus size: 19
321958 CTTCCATAAT
*
321968 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
321987 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
322010 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
322030 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCTTGACC---TT--TCAAGA
* ** *
322054 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
**
322073 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
322091 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
322111 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
322130 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
322152 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
322175 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
322195 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
322218 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
322238 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
322252 TTGGTAAGGT
Statistics
Matches: 205, Mismatches: 29, Indels: 62
0.69 0.10 0.21
Matches are distributed among these distances:
17 5 0.02
18 1 0.00
19 96 0.47
20 7 0.03
21 14 0.07
22 17 0.08
23 3 0.01
24 62 0.30
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 321468 -- 321967
AGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGT
ACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 322252 -- 322751
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATTAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGA
GTACTAATTGTTGATGGTCAGCACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGTC
TTCCTTGATCCCTTCTTTCAGAAAGCACGCACTCGCAAAGCTTTGGCTTTGCTCGTGACGTGACG
TGTAGCGAAGCGTTTGCTTTAGGAAGCTTCTACGACGAGTCGCTTCTCCCCTTCGCCACTCTATC
CTCTCTGGCTCCGAAAGCTCTTCGAGCTTCCGGGTGAGCTTACGCGGACTCTCCGCCTCTTTGAT
TGGTAGGCGGGCGCCCTACTTCAGCGACCCTACGGAAGAAGCCTA
Found at i:322014 original size:24 final size:24
Alignment explanation
Indices: 321965--322029 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
321955 GTCCTTCCAT
321965 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
321986 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
322008 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
322030 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 321465 -- 321964
GACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 322030 -- 322529
CAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATTAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAT
CAAGTCCTGACTGTTTTGGTATGGTGAGTACTAATTGTTGATGGTCAGCACTCATTTTGATGGTC
ATTGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCCCTTCTTT
Found at i:322026 original size:43 final size:43
Alignment explanation
Indices: 321965--322337 Score: 369
Period size: 43 Copynumber: 8.8 Consensus size: 43
321955 GTCCTTCCAT
321965 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*** *
322008 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* ** *
322052 -GTCAGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * *
322089 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
322130 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
322173 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
322216 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * ** *
322260 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAG
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* *
322303 -GTCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
322338 TTGATAAGGT
Statistics
Matches: 282, Mismatches: 32, Indels: 33
0.81 0.09 0.10
Matches are distributed among these distances:
37 2 0.01
38 25 0.09
39 1 0.00
41 34 0.12
42 13 0.05
43 198 0.70
44 9 0.03
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 321465 -- 321964
GACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTG
AGTACTCATTGTTGATGGAAAATGGCATATAATTTGTTGTCAAGTGAGTACTAATAGCATACAAT
TGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 322338 -- 322837
TTGATAAGGTGAGTACTGATGACATACAAATTAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTAATTGTTGATGGTCAG
CACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCCCTTCTTTCAG
AAAGCACGCACTCGCAAAGCTTTGGCTTTGCTCGTGACGTGACGTGTAGCGAAGCGTTTGCTTTA
GGAAGCTTCTACGACGAGTCGCTTCTCCCCTTCGCCACTCTATCCTCTCTGGCTCCGAAAGCTCT
TCGAGCTTCCGGGTGAGCTTACGCGGACTCTCCGCCTCTTTGATTGGTAGGCGGGCGCCCTACTT
CAGCGACCCTACGGAAGAAGCCTATACTATAGTGGTTTCCATCGTGACGCTGTGGTTAGGCCGAC
TACTCTACTATAGGCTACTTCTAGCTTCTATAGTGGCCTGGGTGT
Found at i:322185 original size:24 final size:23
Alignment explanation
Indices: 322152--322237 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
322142 GATTTCAAGA
*
322152 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
322176 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
*
322195 CAGTCTTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
322219 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
322238 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.31
20 1 0.02
23 1 0.02
24 35 0.65
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 321652 -- 322151
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 322238 -- 322737
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TTAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCATCAAGTCCTGACTG
TTTTGGTATGGTGAGTACTAATTGTTGATGGTCAGCACTCATTTTGATGGTCATTGTCCTTTTCT
TTCAAGAAATTGTCTTCCTTGATCCCTTCTTTCAGAAAGCACGCACTCGCAAAGCTTTGGCTTTG
CTCGTGACGTGACGTGTAGCGAAGCGTTTGCTTTAGGAAGCTTCTACGACGAGTCGCTTCTCCCC
TTCGCCACTCTATCCTCTCTGGCTCCGAAAGCTCTTCGAGCTTCCGGGTGAGCTTACGCGGACTC
TCCGCCTCTTTGATTGGTAGGCGGGCGCCCTACTTCAGCGACCCT
Found at i:322290 original size:19 final size:19
Alignment explanation
Indices: 322263--322333 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
322253 TGGTAAGGTT
322263 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
322282 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
322306 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
*
322325 AGTCTTGAC
1 AGTCCTGAC
322334 CTTTTTGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
19 17 0.40
20 3 0.07
21 5 0.12
22 5 0.12
23 3 0.07
24 9 0.21
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 321763 -- 322262
CAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 322334 -- 322833
CTTTTTGATAAGGTGAGTACTGATGACATACAAATTAGTCTTGATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCCATCAAGTCCTGACTGTTTTGGTATGGTGAGTACTAATTGTTGATGG
TCAGCACTCATTTTGATGGTCATTGTCCTTTTCTTTCAAGAAATTGTCTTCCTTGATCCCTTCTT
TCAGAAAGCACGCACTCGCAAAGCTTTGGCTTTGCTCGTGACGTGACGTGTAGCGAAGCGTTTGC
TTTAGGAAGCTTCTACGACGAGTCGCTTCTCCCCTTCGCCACTCTATCCTCTCTGGCTCCGAAAG
CTCTTCGAGCTTCCGGGTGAGCTTACGCGGACTCTCCGCCTCTTTGATTGGTAGGCGGGCGCCCT
ACTTCAGCGACCCTACGGAAGAAGCCTATACTATAGTGGTTTCCATCGTGACGCTGTGGTTAGGC
CGACTACTCTACTATAGGCTACTTCTAGCTTCTATAGTGGCCTGG
Found at i:331247 original size:15 final size:15
Alignment explanation
Indices: 331229--331264 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
331219 TGCTGGACTA
*
331229 CTGCTTGCTGAACCC
1 CTGCTTGCCGAACCC
331244 CTGCTTGCCGAACCC
1 CTGCTTGCCGAACCC
*
331259 CAGCTT
1 CTGCTT
331265 ACCTGACTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.42, G:0.19, T:0.25
Consensus pattern (15 bp):
CTGCTTGCCGAACCC
Left flanking sequence: Indices 330729 -- 331228
GGCTTGATTCGCTGGAGGGAGAAACCGGTTTCCATTGTACAAGCAAGATTGGTTGGCTTAGCTCA
CTTTTCTGTAGGTTCACTATTGACCTACGCAGCTTTCTTGATTGCTTCTACATCGGGCTTGGTTG
AGTTTCTGATTTCTTTGAAAAACGAAGGTCATTCTCATTTTGTCGATGGAGAGGGGGGGGTGCGC
CTTCATACTTATCAGACATCTAGGATCCGATCTGTATAGAAAACGCCTTGTAATAATGCTTGTTA
GGCTGAGATCTCGGAAATGATCGACTTCAAACAAAACAAAGAGATGCGAAAATGGATGAGAAAAC
GGTTCTGGTATGGAGAGATGGAAAATGCCAAAAATGACAAGTCACCGAAAAGAAGGAAAGAGAGA
TTGAATACAAAAAAAGAAAGCTAGTGCGTCTTAGTCTCTTTCTTCATCCTTTCATCTCGTTTCTG
CCAACGGCCCTGAATGGATATTCATTGAAGACCTCTGCTGGACTA
Right flanking sequence: Indices 331265 -- 331764
ACCTGACTACCTCCTCCAGACTCGGACTACCTCTTCCAGACTCGACTCATTAGTGCAATAGTCCT
CTTCCTATTTCGAGGATCTCTCTCTTTTTTTCCTATATTGTGGCTGTTGGTTTGTGAAGAAATTC
TTTGTTGACGTGGCTATCAAGTCAACTCCACACACTCATTTCTTCCTGCGACCGACAGGTAGTTC
TGCTTCTCCATCGGAGAAGTTCATTTGCTTAACACACCCGACGGGTGCTTTTCCTGGTGAGTGAG
AGGTTTTGGAAGGATTCAGTCAGGACTGGGAATCGCATGGCCCCTGACTGAATTAGTCTAAAAAC
AGACTCGAATGACCATCGCCTGAGAGGCACTTTTTGTTTTGTGCAGCTAACCCACTAGAAAGACT
GACTAGACAAAAAAAGACAGAGTCACACAGGCAGGCAGTTTTTTTTTGAGCTCTAGAACTAACTA
AACTCACTAGTGGTTCAATAGTCAAACAAAGGTCGGGCCTGACAA
Found at i:331294 original size:20 final size:20
Alignment explanation
Indices: 331269--331308 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
331259 CAGCTTACCT
331269 GACTACCTCCTCCAGACTCG
1 GACTACCTCCTCCAGACTCG
*
331289 GACTACCTCTTCCAGACTCG
1 GACTACCTCCTCCAGACTCG
331309 ACTCATTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.42, G:0.15, T:0.23
Consensus pattern (20 bp):
GACTACCTCCTCCAGACTCG
Left flanking sequence: Indices 330769 -- 331268
AAGCAAGATTGGTTGGCTTAGCTCACTTTTCTGTAGGTTCACTATTGACCTACGCAGCTTTCTTG
ATTGCTTCTACATCGGGCTTGGTTGAGTTTCTGATTTCTTTGAAAAACGAAGGTCATTCTCATTT
TGTCGATGGAGAGGGGGGGGTGCGCCTTCATACTTATCAGACATCTAGGATCCGATCTGTATAGA
AAACGCCTTGTAATAATGCTTGTTAGGCTGAGATCTCGGAAATGATCGACTTCAAACAAAACAAA
GAGATGCGAAAATGGATGAGAAAACGGTTCTGGTATGGAGAGATGGAAAATGCCAAAAATGACAA
GTCACCGAAAAGAAGGAAAGAGAGATTGAATACAAAAAAAGAAAGCTAGTGCGTCTTAGTCTCTT
TCTTCATCCTTTCATCTCGTTTCTGCCAACGGCCCTGAATGGATATTCATTGAAGACCTCTGCTG
GACTACTGCTTGCTGAACCCCTGCTTGCCGAACCCCAGCTTACCT
Right flanking sequence: Indices 331309 -- 331808
ACTCATTAGTGCAATAGTCCTCTTCCTATTTCGAGGATCTCTCTCTTTTTTTCCTATATTGTGGC
TGTTGGTTTGTGAAGAAATTCTTTGTTGACGTGGCTATCAAGTCAACTCCACACACTCATTTCTT
CCTGCGACCGACAGGTAGTTCTGCTTCTCCATCGGAGAAGTTCATTTGCTTAACACACCCGACGG
GTGCTTTTCCTGGTGAGTGAGAGGTTTTGGAAGGATTCAGTCAGGACTGGGAATCGCATGGCCCC
TGACTGAATTAGTCTAAAAACAGACTCGAATGACCATCGCCTGAGAGGCACTTTTTGTTTTGTGC
AGCTAACCCACTAGAAAGACTGACTAGACAAAAAAAGACAGAGTCACACAGGCAGGCAGTTTTTT
TTTGAGCTCTAGAACTAACTAAACTCACTAGTGGTTCAATAGTCAAACAAAGGTCGGGCCTGACA
AAAAGGCCCGTGTTCATGCAGCAAGATTGGGACGTGCCGATTACT
Found at i:338253 original size:16 final size:16
Alignment explanation
Indices: 338232--338262 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
338222 AGGACCCTTT
338232 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
338248 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
338263 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 337732 -- 338231
TTTCGGCCGGCCTCAAAATGACTCTATGTTAGCTATAGCCGCCTACTTCTAGTATAACGCACGCA
AGCCTACTTATTCACACTTCTAATGAGGGGCGGGCCGGCGAGCACCATTAAGCTATCCGCACGGA
TAGCTGATAGAGTTCACCCTTGCGGAACCCCCTAGCTCGTTCTTCATCGGATTCCGTCTCGCGGT
TTCTTTCCACTCATCGGATGATTACGTTCCGCACTTCTCGCTGTCGCTCTTTTCTCTATGGCACT
CGCTGTCGCTTCGACGTCAAAGCACTCGCAAAGCTTTGCGTGTCATGTCACGAGCAAAGCACTCT
GAACAAGAGGGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTG
CTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 338263 -- 338762
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTCAGGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGG
TCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTT
GACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCA
Found at i:338329 original size:43 final size:42
Alignment explanation
Indices: 338281--338378 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
338271 TGATTGAGGA
* * * *
338281 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
338324 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
338366 AAAGATCAGAACT
1 AAAG-TCAGAACT
338379 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 337781 -- 338280
TAGTATAACGCACGCAAGCCTACTTATTCACACTTCTAATGAGGGGCGGGCCGGCGAGCACCATT
AAGCTATCCGCACGGATAGCTGATAGAGTTCACCCTTGCGGAACCCCCTAGCTCGTTCTTCATCG
GATTCCGTCTCGCGGTTTCTTTCCACTCATCGGATGATTACGTTCCGCACTTCTCGCTGTCGCTC
TTTTCTCTATGGCACTCGCTGTCGCTTCGACGTCAAAGCACTCGCAAAGCTTTGCGTGTCATGTC
ACGAGCAAAGCACTCTGAACAAGAGGGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAA
TTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATG
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 338379 -- 338878
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAAACAGGTCAGGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTG
TATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTAC
AAACAAATGTCATTAGTACTCACCATACCAAACAAATGCCATTAGTGCTCACCATACCCAATTGG
AATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCA
Found at i:338457 original size:28 final size:28
Alignment explanation
Indices: 338434--338553 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
338424 TGACAATTGT
338434 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
338462 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
338490 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
338518 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
338546 ATGCCATT
1 ATGCCATT
338554 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 337934 -- 338433
CACTCATCGGATGATTACGTTCCGCACTTCTCGCTGTCGCTCTTTTCTCTATGGCACTCGCTGTC
GCTTCGACGTCAAAGCACTCGCAAAGCTTTGCGTGTCATGTCACGAGCAAAGCACTCTGAACAAG
AGGGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTG
AAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 338554 -- 339053
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATAT
GCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAACAAATGCCATTAG
TGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCA
TCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATA
GTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAG
Found at i:338612 original size:19 final size:19
Alignment explanation
Indices: 338588--338661 Score: 85
Period size: 19 Copynumber: 3.6 Consensus size: 19
338578 ATACCAAAAC
*
338588 AGGTCAGGACTGTCTTGAA
1 AGGTCAGGACTCTCTTGAA
338607 AGGTCAGGACTCATTCTTCTTGAA
1 AGGTCAGGA--C--TC-TCTTGAA
*
338631 AGGTCAGGACTCTTTTGAA
1 AGGTCAGGACTCTCTTGAA
338650 AGGTCAGGACTC
1 AGGTCAGGACTC
338662 ATTGCAATTG
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
19 27 0.56
20 2 0.04
21 1 0.02
22 1 0.02
23 1 0.02
24 16 0.33
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (19 bp):
AGGTCAGGACTCTCTTGAA
Left flanking sequence: Indices 338088 -- 338587
CTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGG
ATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAA
AAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 338662 -- 339161
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCAC
CATACCAAACAAATGCCATTAGTGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATCAA
AAAAAGGAGATGCCATTATCCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGG
AAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTT
TGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGG
Found at i:338627 original size:24 final size:24
Alignment explanation
Indices: 338600--338664 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
338590 GTCAGGACTG
338600 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
338624 TCTTGAAAGGTCAGGA--C--TCT
1 TCTTGAAAGGTCAGGACTCATTCT
338644 T-TTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
338665 GCAATTGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
19 14 0.38
20 4 0.11
21 1 0.03
22 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 338100 -- 338599
CAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAG
GAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCT
TTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACT
GTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCAT
GACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTT
TCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGGACTG
Right flanking sequence: Indices 338665 -- 339164
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCAT
ACCAAACAAATGCCATTAGTGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATCAAAAA
AAGGAGATGCCATTATCCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAA
ATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGT
ACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGT
ACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
Found at i:338811 original size:29 final size:29
Alignment explanation
Indices: 338747--338826 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
338737 TACTTTCCAT
**
338747 ATGCCATTAGTACTCACTGTA-CAAACAA
1 ATGCCATTAGTACTCACCATACCAAACAA
*
338775 ATGTCATTAGTACTCACCATACCAAACAA
1 ATGCCATTAGTACTCACCATACCAAACAA
*
338804 ATGCCATTAGTGCTCACCATACC
1 ATGCCATTAGTACTCACCATACC
338827 CAATTGGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 18 0.39
29 28 0.61
ACGTcount: A:0.36, C:0.29, G:0.10, T:0.25
Consensus pattern (29 bp):
ATGCCATTAGTACTCACCATACCAAACAA
Left flanking sequence: Indices 338247 -- 338746
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAA
CTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTA
CTCACCATACCAAAACAGGTCAGGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 338827 -- 339326
CAATTGGAATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAACATGG
ATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
Found at i:338997 original size:28 final size:28
Alignment explanation
Indices: 338965--339065 Score: 193
Period size: 28 Copynumber: 3.6 Consensus size: 28
338955 TGTTGGTATG
*
338965 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
338993 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
339021 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
339049 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
339066 ACAATTGCAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 338465 -- 338964
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAG
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTC
ACCATACCAAACAAATGCCATTAGTGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATC
AAAAAAAGGAGATGCCATTATCCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 339066 -- 339565
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTT
Found at i:339227 original size:95 final size:98
Alignment explanation
Indices: 339049--339228 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
339039 TGTTTGTACA
* *
339049 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
339114 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
339148 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
339209 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
339229 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 338549 -- 339048
CCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCA
TTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTC
CATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAACAAATGCC
ATTAGTGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATT
ATCCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTG
GTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 339229 -- 339728
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
AAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
Found at i:339258 original size:43 final size:43
Alignment explanation
Indices: 339197--339409 Score: 198
Period size: 43 Copynumber: 5.2 Consensus size: 43
339187 TTCCATCAAA
* *
339197 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
339240 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
339283 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
339321 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
339359 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
339402 AGTACTGA
1 AGTCCTGA
339410 TGACATACAA
Statistics
Matches: 136, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 3 0.02
38 20 0.15
39 3 0.02
41 1 0.01
42 4 0.03
43 93 0.68
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 338697 -- 339196
CAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTC
ACTGTACAAACAAATGTCATTAGTACTCACCATACCAAACAAATGCCATTAGTGCTCACCATACC
CAATTGGAATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAACATGG
ATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAG
TGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 339410 -- 339909
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGT
TTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTG
Found at i:339267 original size:19 final size:19
Alignment explanation
Indices: 339240--339310 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
339230 TGGTAAGGTT
339240 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
339259 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
* *
339283 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
339302 AGTCTTGAC
1 AGTCCTGAC
339311 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 16 0.40
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 338740 -- 339239
TTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAACAAA
TGCCATTAGTGCTCACCATACCCAATTGGAATTGTATGCCATTATCCATCAAAAAAAGGAGATGC
CATTATCCATCAACCAACATGGATTTTGGAAGGCATACAATTTGTTGTATGGAAAATGGCATCTT
TTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 339311 -- 339810
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGT
Found at i:339286 original size:24 final size:24
Alignment explanation
Indices: 339215--339291 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
339205 CCTTTCAAGA
* *
339215 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
339239 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
339258 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
339282 CAGTCCTGAC
1 CAGTCCTGAC
339292 TGTGAAATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 17 0.43
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 338715 -- 339214
CTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTC
ATTAGTACTCACCATACCAAACAAATGCCATTAGTGCTCACCATACCCAATTGGAATTGTATGCC
ATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAACATGGATTTTGGAAGGCATACAA
TTTGTTGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTA
ATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 339292 -- 339791
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTAAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGAC
Found at i:339540 original size:43 final size:43
Alignment explanation
Indices: 339487--339627 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 43
339477 CTTCCATAAT
* *
339487 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATAAGTCCTGACCTTTCAAGA
*** * *
339530 CAGTCTTGACCTTTTTGGTAAG-GTAAGTACTGA--TTTCAAGA
1 CAGTCTTGACCTTTCAAG-AAGAATAAGTCCTGACCTTTCAAGA
*
339571 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATAAGTCCTGACCTTTCAAGA
*
339614 CAGTCTTGATCTTT
1 CAGTCTTGACCTTT
339628 TTGGTAAGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
40 3 0.04
41 31 0.39
43 43 0.54
44 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATAAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 338987 -- 339486
TGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 339628 -- 340127
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
Found at i:339587 original size:19 final size:19
Alignment explanation
Indices: 339563--339627 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 19
339553 TAAGTACTGA
339563 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
339582 TTTCAAGAAGAATCAGTCCTGACC
1 TTTC---AAG-A-CAGTCTTGACC
*
339606 TTTCAAGACAGTCTTGATC
1 TTTCAAGACAGTCTTGACC
339625 TTT
1 TTT
339628 TTGGTAAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
19 16 0.42
20 1 0.03
21 3 0.08
22 3 0.08
23 1 0.03
24 14 0.37
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 339063 -- 339562
CATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTA
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGA
Right flanking sequence: Indices 339628 -- 340127
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTG
TTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
Found at i:339594 original size:84 final size:85
Alignment explanation
Indices: 339487--339746 Score: 344
Period size: 84 Copynumber: 3.2 Consensus size: 85
339477 CTTCCATAAT
* * *
339487 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
* *
339552 GTAAGTACTGA-TTTCAAGA
66 GTAAGTCCTGACTTTAAAGA
339571 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
* *
339636 GTCAGTCCTGACTGTGAAAGA
66 GTAAGTCCTGACT-TTAAAGA
*
339657 CAGTCTTGA-C---C-AGAAGAATCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAG
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
*
339712 GTTAGTCCTGACTTTGAAAGA
66 GTAAGTCCTGACTTT-AAAGA
339733 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
339747 TTGATAAGGT
Statistics
Matches: 159, Mismatches: 10, Indels: 18
0.85 0.05 0.10
Matches are distributed among these distances:
75 1 0.01
76 50 0.31
77 3 0.02
81 17 0.11
82 1 0.01
84 71 0.45
85 2 0.01
86 14 0.09
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (85 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTAAGTCCTGACTTTAAAGA
Left flanking sequence: Indices 338987 -- 339486
TGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 339747 -- 340246
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTG
AGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGA
AGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATGAGCTAA
Found at i:339641 original size:43 final size:42
Alignment explanation
Indices: 339512--339765 Score: 208
Period size: 43 Copynumber: 6.2 Consensus size: 42
339502 AAGAAGAATG
*
339512 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTA
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** *
339555 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
339596 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
339639 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
339677 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
339715 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
339758 AGTACTGA
1 AGTCCTGA
339766 TGACATACAA
Statistics
Matches: 164, Mismatches: 30, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
33 12 0.07
37 3 0.02
38 21 0.13
39 3 0.02
40 3 0.02
41 32 0.20
42 2 0.01
43 85 0.52
44 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 339012 -- 339511
GTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAAT
GAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 339766 -- 340265
TGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGA
AAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
ATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGAC
AGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAA
AGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTC
CTGACCTTTTCCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAG
Found at i:339875 original size:28 final size:29
Alignment explanation
Indices: 339832--339951 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
339822 GTTGATGGAA
339832 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
339860 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
339888 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
339916 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
339944 AATGGCAT
1 AATGGCAT
339952 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 339332 -- 339831
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 339952 -- 340451
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCT
TTTCTTTTGTTTTTTGTTTTTTTGACTTTGTCAACGACAAAGGAGTTTCCAAAGGCGAACTGCCC
CCTCCCCTTCTATAAAAAAAAACAGATAGTCAAAAGTTTCCGTCACTTTTCCAAAGGTTACCGAA
GGAATTCAAGTAGCGACGAAAGGAGCCTCCTTTGATTCATTCTAT
Found at i:340069 original size:43 final size:43
Alignment explanation
Indices: 340021--340104 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
340011 CTGATCTTTC
* * * *
340021 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
340064 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
340105 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 339521 -- 340020
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTAAGTACTGATTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGT
GAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 340105 -- 340604
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTT
TCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTTTGTTTTTTGTTTTTTT
GACTTTGTCAACGACAAAGGAGTTTCCAAAGGCGAACTGCCCCCTCCCCTTCTATAAAAAAAAAC
AGATAGTCAAAAGTTTCCGTCACTTTTCCAAAGGTTACCGAAGGAATTCAAGTAGCGACGAAAGG
AGCCTCCTTTGATTCATTCTATGTCCTGCCCTCGGTACCGGATGGTGCTGGAGGACTCTCTTTTG
CCGGTCTTTCTATATTATCACCATCCATTCCATACAATATAGTAGATCTTCACGAGCGTGAGTTC
CGACCCAGCCCACATACGTTCGGTCGCGCGTGACTTCGGAACCTG
Found at i:340164 original size:19 final size:16
Alignment explanation
Indices: 340123--340153 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
340113 CATTCTCATT
340123 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
340139 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
340154 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 339623 -- 340122
TCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 340154 -- 340653
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTTCCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGTCCTTGGCTTTTCTTT
TGTTTTTTGTTTTTTTGACTTTGTCAACGACAAAGGAGTTTCCAAAGGCGAACTGCCCCCTCCCC
TTCTATAAAAAAAAACAGATAGTCAAAAGTTTCCGTCACTTTTCCAAAGGTTACCGAAGGAATTC
AAGTAGCGACGAAAGGAGCCTCCTTTGATTCATTCTATGTCCTGCCCTCGGTACCGGATGGTGCT
GGAGGACTCTCTTTTGCCGGTCTTTCTATATTATCACCATCCATTCCATACAATATAGTAGATCT
TCACGAGCGTGAGTTCCGACCCAGCCCACATACGTTCGGTCGCGCGTGACTTCGGAACCTGCGTG
TGGTATATATTCACATAGTTCACCCACTATAGGATACAACCTGAT
Found at i:343883 original size:20 final size:19
Alignment explanation
Indices: 343858--343949 Score: 103
Period size: 19 Copynumber: 4.7 Consensus size: 19
343848 GAAAGGATTA
*
343858 TGGAAAGGTTATGGAATTTC
1 TGGAAAGGTCA-GGAATTTC
** **
343878 TGGAAAGGAAAGGAGATTGA
1 TGGAAAGGTCAGGA-ATTTC
*
343898 TGGAAAGGTCAGGACTTTC
1 TGGAAAGGTCAGGAATTTC
*
343917 TGGAAAGGTCAGGACTTTC
1 TGGAAAGGTCAGGAATTTC
343936 TGGAAAGGTCAGGA
1 TGGAAAGGTCAGGA
343950 CTAATGAGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
19 38 0.61
20 24 0.39
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.24
Consensus pattern (19 bp):
TGGAAAGGTCAGGAATTTC
Left flanking sequence: Indices 343358 -- 343857
AGATCGCCAGTGCCATAATTTGCATGCCTGCATCATCGTCTGGGTGCTGTTCAACAAAGGTCTGC
AGGAATTCCGAGGATACACATTGCCCCTGACACCTTTCTTTCTCCTATTGCTACTGCTATTGATA
CTGATACTGCTTCCTTTTTTTTGTGTTCCTTCTTTTCTGATTCTGAGCGAGCTCATCGACACGGA
CAAGTGGACAAATTCATGCCTGACGAGTCAGCAAGAGTCCCGTCATCTCGTGCAAATGAGGGGAA
ATAGATAGAGGCAGAGAAGGGTCCGAAGGTGCTCAGGACAAATGCCAAACCAAATGCACAGAAGA
AGCTCTGCAGATGAATTCCCGGTGCATGTCTTCTTGTTCTCGAAAGCACTCCCAGTCTCTCCCGG
GCGAGCTCGACGGGCATGGTAGCCAAGAGAGAAAGGCAGGTAATGGCAATTTAATGATCTGTCTT
TCCTGAGCTAGTAGCTAGTGGCATATCGATAATTGGAAAGGATTA
Right flanking sequence: Indices 343950 -- 344449
CTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTC
TTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCA
CCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
Found at i:343922 original size:19 final size:19
Alignment explanation
Indices: 343898--343951 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
343888 AGGAGATTGA
343898 TGGAAAGGTCAGGACTTTC
1 TGGAAAGGTCAGGACTTTC
343917 TGGAAAGGTCAGGACTTTC
1 TGGAAAGGTCAGGACTTTC
343936 TGGAAAGGTCAGGACT
1 TGGAAAGGTCAGGACT
343952 AATGAGAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (19 bp):
TGGAAAGGTCAGGACTTTC
Left flanking sequence: Indices 343398 -- 343897
TGGGTGCTGTTCAACAAAGGTCTGCAGGAATTCCGAGGATACACATTGCCCCTGACACCTTTCTT
TCTCCTATTGCTACTGCTATTGATACTGATACTGCTTCCTTTTTTTTGTGTTCCTTCTTTTCTGA
TTCTGAGCGAGCTCATCGACACGGACAAGTGGACAAATTCATGCCTGACGAGTCAGCAAGAGTCC
CGTCATCTCGTGCAAATGAGGGGAAATAGATAGAGGCAGAGAAGGGTCCGAAGGTGCTCAGGACA
AATGCCAAACCAAATGCACAGAAGAAGCTCTGCAGATGAATTCCCGGTGCATGTCTTCTTGTTCT
CGAAAGCACTCCCAGTCTCTCCCGGGCGAGCTCGACGGGCATGGTAGCCAAGAGAGAAAGGCAGG
TAATGGCAATTTAATGATCTGTCTTTCCTGAGCTAGTAGCTAGTGGCATATCGATAATTGGAAAG
GATTATGGAAAGGTTATGGAATTTCTGGAAAGGAAAGGAGATTGA
Right flanking sequence: Indices 343952 -- 344451
AATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTT
CTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
TTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:343922 original size:39 final size:38
Alignment explanation
Indices: 343853--343951 Score: 117
Period size: 39 Copynumber: 2.6 Consensus size: 38
343843 AATTGGAAAG
* *
343853 GATTATGGAAAGGTTATGGAATTTCTGGAAAGGAAAGGA
1 GATTATGGAAAGGTCA-GGACTTTCTGGAAAGGAAAGGA
**
343892 GATTGATGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGA
1 GATT-ATGGAAAGGTCAGGACTTTCTGGAAAGGAAAGGA
** *
343931 CTTTCTGGAAAGGTCAGGACT
1 GATTATGGAAAGGTCAGGACT
343952 AATGAGAATG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 16 0.31
39 25 0.48
40 11 0.21
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.25
Consensus pattern (38 bp):
GATTATGGAAAGGTCAGGACTTTCTGGAAAGGAAAGGA
Left flanking sequence: Indices 343353 -- 343852
CCCATAGATCGCCAGTGCCATAATTTGCATGCCTGCATCATCGTCTGGGTGCTGTTCAACAAAGG
TCTGCAGGAATTCCGAGGATACACATTGCCCCTGACACCTTTCTTTCTCCTATTGCTACTGCTAT
TGATACTGATACTGCTTCCTTTTTTTTGTGTTCCTTCTTTTCTGATTCTGAGCGAGCTCATCGAC
ACGGACAAGTGGACAAATTCATGCCTGACGAGTCAGCAAGAGTCCCGTCATCTCGTGCAAATGAG
GGGAAATAGATAGAGGCAGAGAAGGGTCCGAAGGTGCTCAGGACAAATGCCAAACCAAATGCACA
GAAGAAGCTCTGCAGATGAATTCCCGGTGCATGTCTTCTTGTTCTCGAAAGCACTCCCAGTCTCT
CCCGGGCGAGCTCGACGGGCATGGTAGCCAAGAGAGAAAGGCAGGTAATGGCAATTTAATGATCT
GTCTTTCCTGAGCTAGTAGCTAGTGGCATATCGATAATTGGAAAG
Right flanking sequence: Indices 343952 -- 344451
AATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTT
CTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACC
TTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:344017 original size:16 final size:16
Alignment explanation
Indices: 343996--344026 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
343986 AGGACCCTTT
343996 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
344012 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
344027 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 343496 -- 343995
GCTTCCTTTTTTTTGTGTTCCTTCTTTTCTGATTCTGAGCGAGCTCATCGACACGGACAAGTGGA
CAAATTCATGCCTGACGAGTCAGCAAGAGTCCCGTCATCTCGTGCAAATGAGGGGAAATAGATAG
AGGCAGAGAAGGGTCCGAAGGTGCTCAGGACAAATGCCAAACCAAATGCACAGAAGAAGCTCTGC
AGATGAATTCCCGGTGCATGTCTTCTTGTTCTCGAAAGCACTCCCAGTCTCTCCCGGGCGAGCTC
GACGGGCATGGTAGCCAAGAGAGAAAGGCAGGTAATGGCAATTTAATGATCTGTCTTTCCTGAGC
TAGTAGCTAGTGGCATATCGATAATTGGAAAGGATTATGGAAAGGTTATGGAATTTCTGGAAAGG
AAAGGAGATTGATGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 344027 -- 344526
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATAAAG
Found at i:344093 original size:43 final size:42
Alignment explanation
Indices: 344045--344142 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
344035 TGATTGAGGA
* * * *
344045 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
344088 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
344130 AAAGATCAGAACT
1 AAAG-TCAGAACT
344143 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 343545 -- 344044
GACACGGACAAGTGGACAAATTCATGCCTGACGAGTCAGCAAGAGTCCCGTCATCTCGTGCAAAT
GAGGGGAAATAGATAGAGGCAGAGAAGGGTCCGAAGGTGCTCAGGACAAATGCCAAACCAAATGC
ACAGAAGAAGCTCTGCAGATGAATTCCCGGTGCATGTCTTCTTGTTCTCGAAAGCACTCCCAGTC
TCTCCCGGGCGAGCTCGACGGGCATGGTAGCCAAGAGAGAAAGGCAGGTAATGGCAATTTAATGA
TCTGTCTTTCCTGAGCTAGTAGCTAGTGGCATATCGATAATTGGAAAGGATTATGGAAAGGTTAT
GGAATTTCTGGAAAGGAAAGGAGATTGATGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGACTTT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 344143 -- 344642
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATAAAGGACTCA
TTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAAC
Found at i:344221 original size:28 final size:28
Alignment explanation
Indices: 344198--344317 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
344188 TGACAATTGT
344198 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
344226 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
344254 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
344282 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
344310 ATGCCATT
1 ATGCCATT
344318 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 343698 -- 344197
TTCCCGGTGCATGTCTTCTTGTTCTCGAAAGCACTCCCAGTCTCTCCCGGGCGAGCTCGACGGGC
ATGGTAGCCAAGAGAGAAAGGCAGGTAATGGCAATTTAATGATCTGTCTTTCCTGAGCTAGTAGC
TAGTGGCATATCGATAATTGGAAAGGATTATGGAAAGGTTATGGAATTTCTGGAAAGGAAAGGAG
ATTGATGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGACTTTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 344318 -- 344817
TTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAATGACCATAAAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATT
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGACAACAAATTATAT
GCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTGTTTTGAAAGGTCA
AGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGA
Found at i:344487 original size:16 final size:16
Alignment explanation
Indices: 344466--344496 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
344456 TCATTCTTCT
344466 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
344482 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
344497 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 343966 -- 344465
AGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGAC
AGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 344497 -- 344996
AATGAGAATGATTGAGGAATGACCATAAAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGA
AAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACT
TGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGA
CTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGAC
TCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTT
GAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
Found at i:344561 original size:19 final size:20
Alignment explanation
Indices: 344534--344574 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
344524 AAGGACTCAT
344534 TCTTCTTGAAAGGTCAGGAC
1 TCTTCTTGAAAGGTCAGGAC
344554 TCTT-TTGAAAGGTCAGGAC
1 TCTTCTTGAAAGGTCAGGAC
344573 TC
1 TC
344575 ATTGCAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (20 bp):
TCTTCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 344034 -- 344533
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATAAAGGACTCAT
Right flanking sequence: Indices 344575 -- 345074
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGACAACAAATTA
TATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTGTTTTGAAAGG
TCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGACTCTCTGGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGG
Found at i:344621 original size:32 final size:31
Alignment explanation
Indices: 344580--344713 Score: 190
Period size: 28 Copynumber: 4.4 Consensus size: 31
344570 GACTCATTGC
344580 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATT-TATGCCATTAGTACTCACTTGACAACA
344612 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATT-TATGCCATTAGTACTCACTTGACAACA
344644 AA---ATGCCATTAGTACTCACTTGACAACA
1 AATTTATGCCATTAGTACTCACTTGACAACA
*
344672 AA---ATGCTATTAGTACTCACTTGACAACA
1 AATTTATGCCATTAGTACTCACTTGACAACA
344700 AATTATATGCCATT
1 AATT-TATGCCATT
344714 TTCCATCAAC
Statistics
Matches: 96, Mismatches: 2, Indels: 8
0.91 0.02 0.08
Matches are distributed among these distances:
28 55 0.57
32 41 0.43
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (31 bp):
AATTTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 344080 -- 344579
TGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTC
TTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCA
CCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATAAAGGACTCATT
CTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 344714 -- 345213
TTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTGTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTGGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATACAGGACTCATTCTTCTTGAAAGGTCA
Found at i:344710 original size:60 final size:60
Alignment explanation
Indices: 344579--344713 Score: 188
Period size: 60 Copynumber: 2.2 Consensus size: 60
344569 GGACTCATTG
*
344579 CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAA
1 CAATTATATGCCATTAGTACTCACTTGACAACAAA---TATGCCATTAGTACTCACTTGACAA
*
344642 CAA--A-ATGCCATTAGTACTCACTTGACAACAAA-ATGCTATTAGTACTCACTTGACAA
1 CAATTATATGCCATTAGTACTCACTTGACAACAAATATGCCATTAGTACTCACTTGACAA
344698 CAAATTATATGCCATT
1 C-AATTATATGCCATT
344714 TTCCATCAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
56 24 0.36
57 2 0.03
59 1 0.02
60 36 0.55
63 3 0.05
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.30
Consensus pattern (60 bp):
CAATTATATGCCATTAGTACTCACTTGACAACAAATATGCCATTAGTACTCACTTGACAA
Left flanking sequence: Indices 344079 -- 344578
CTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTT
CTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
ACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATAAAGGACTCAT
TCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTG
Right flanking sequence: Indices 344714 -- 345213
TTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTGTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTGGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATACAGGACTCATTCTTCTTGAAAGGTCA
Found at i:344936 original size:28 final size:28
Alignment explanation
Indices: 344913--344976 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
344903 TGACAATTGT
344913 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
344941 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
344969 ATGCCATT
1 ATGCCATT
344977 TTCCATCAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 344413 -- 344912
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATAAAGGACTCATTCTTCTTGA
AAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGAC
AACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAA
AATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACC
ATACCAAAAAAGGTGAGGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACC
ATACCAAAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 344977 -- 345476
TTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTG
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATACAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGACAACAAAT
TATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGC
Found at i:345151 original size:16 final size:16
Alignment explanation
Indices: 345130--345160 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
345120 TCATTCTTCT
345130 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
345146 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
345161 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 344630 -- 345129
CTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGA
CAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTG
TTTTGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGAC
TATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 345161 -- 345660
AATGAGAATGATTGAGGAATGACCATACAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGA
AAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACT
TGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGA
CTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGC
CATTAGTACTCACTGTACAAACAAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACTA
TACCAACAAAATGCCATTTTCCATACCAACAGGACTAATGACAAG
Found at i:345227 original size:19 final size:20
Alignment explanation
Indices: 345198--345238 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
345188 CAGGACTCAT
345198 TCTTCTTGAAAGGTCAGGAC
1 TCTTCTTGAAAGGTCAGGAC
345218 TCTT-TTGAAAGGTCAGGAC
1 TCTTCTTGAAAGGTCAGGAC
345237 TC
1 TC
345239 ATTGCAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (20 bp):
TCTTCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 344698 -- 345197
CAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAAAGGTGAGGACTGTTT
TGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTGAGGACTCTCTG
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTTTTTGAAAGATCAAGACTAT
CTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCAT
Right flanking sequence: Indices 345239 -- 345738
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGAC
AACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGACAACAAATTA
TATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACA
AATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCAC
TGTACAAACAAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACTATACCAACAAAATG
CCATTTTCCATACCAACAGGACTAATGACAAGTGTATGCCATTAGTACTTTTGAAGGAAAAGAAA
AAGCAAAAGGGCAATTGTATGCCATTAGTATTGACTATTACATAA
Found at i:345285 original size:32 final size:31
Alignment explanation
Indices: 345244--345377 Score: 190
Period size: 28 Copynumber: 4.4 Consensus size: 31
345234 GACTCATTGC
345244 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATT-TATGCCATTAGTACTCACTTGACAACA
345276 AATTGTATGCCATTAGTACTCACTTGACAACA
1 AATT-TATGCCATTAGTACTCACTTGACAACA
345308 AA---ATGCCATTAGTACTCACTTGACAACA
1 AATTTATGCCATTAGTACTCACTTGACAACA
*
345336 AA---ATGCTATTAGTACTCACTTGACAACA
1 AATTTATGCCATTAGTACTCACTTGACAACA
345364 AATTATATGCCATT
1 AATT-TATGCCATT
345378 TTCCATCAAC
Statistics
Matches: 96, Mismatches: 2, Indels: 8
0.91 0.02 0.08
Matches are distributed among these distances:
28 55 0.57
32 41 0.43
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (31 bp):
AATTTATGCCATTAGTACTCACTTGACAACA
Left flanking sequence: Indices 344744 -- 345243
AAAAAGGTGAGGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCA
AAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGG
ACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTT
TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCATT
CTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGC
Right flanking sequence: Indices 345378 -- 345877
TTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
AAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACTATACCAACAAAATGCCATTTTCC
ATACCAACAGGACTAATGACAAGTGTATGCCATTAGTACTTTTGAAGGAAAAGAAAAAGCAAAAG
GGCAATTGTATGCCATTAGTATTGACTATTACATAAAGAAGTATGCCATTAGTGCTCACCATACC
AAGAATTGTATGCTATTAGTACTGACTATCCAAAAAATGGAAAGGTGATGTCAAGGTTATGGAAA
GGAAAGGCAAAATGGCATACAATTGCCATTTCCATAATTGCAATT
Found at i:345374 original size:60 final size:60
Alignment explanation
Indices: 345243--345377 Score: 188
Period size: 60 Copynumber: 2.2 Consensus size: 60
345233 GGACTCATTG
*
345243 CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAA
1 CAATTATATGCCATTAGTACTCACTTGACAACAAA---TATGCCATTAGTACTCACTTGACAA
*
345306 CAA--A-ATGCCATTAGTACTCACTTGACAACAAA-ATGCTATTAGTACTCACTTGACAA
1 CAATTATATGCCATTAGTACTCACTTGACAACAAATATGCCATTAGTACTCACTTGACAA
345362 CAAATTATATGCCATT
1 C-AATTATATGCCATT
345378 TTCCATCAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
56 24 0.36
57 2 0.03
59 1 0.02
60 36 0.55
63 3 0.05
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.30
Consensus pattern (60 bp):
CAATTATATGCCATTAGTACTCACTTGACAACAAATATGCCATTAGTACTCACTTGACAA
Left flanking sequence: Indices 344743 -- 345242
AAAAAAGGTGAGGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACC
AAAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTT
TTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCAT
TCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTG
Right flanking sequence: Indices 345378 -- 345877
TTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
AAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACTATACCAACAAAATGCCATTTTCC
ATACCAACAGGACTAATGACAAGTGTATGCCATTAGTACTTTTGAAGGAAAAGAAAAAGCAAAAG
GGCAATTGTATGCCATTAGTATTGACTATTACATAAAGAAGTATGCCATTAGTGCTCACCATACC
AAGAATTGTATGCTATTAGTACTGACTATCCAAAAAATGGAAAGGTGATGTCAAGGTTATGGAAA
GGAAAGGCAAAATGGCATACAATTGCCATTTCCATAATTGCAATT
Found at i:345580 original size:29 final size:29
Alignment explanation
Indices: 345547--345602 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
345537 TACTTTCCAT
*
345547 ATGCCATTAGTACTCACTGTACAAACAAA
1 ATGCCATTAGTACTCACTATACAAACAAA
*
345576 ATGCCATTAGTACTCACTATACCAACA
1 ATGCCATTAGTACTCACTATACAAACA
345603 TGAGTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.25
Consensus pattern (29 bp):
ATGCCATTAGTACTCACTATACAAACAAA
Left flanking sequence: Indices 345047 -- 345546
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTGGAAAG
GTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAATGACCATACAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATT
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGCCATTAGTACTCACTTGACAAC
AAAATGCCATTAGTACTCACTTGACAACAAAATGCTATTAGTACTCACTTGACAACAAATTATAT
GCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 345603 -- 346102
TGAGTACTCACTATACCAACAAAATGCCATTTTCCATACCAACAGGACTAATGACAAGTGTATGC
CATTAGTACTTTTGAAGGAAAAGAAAAAGCAAAAGGGCAATTGTATGCCATTAGTATTGACTATT
ACATAAAGAAGTATGCCATTAGTGCTCACCATACCAAGAATTGTATGCTATTAGTACTGACTATC
CAAAAAATGGAAAGGTGATGTCAAGGTTATGGAAAGGAAAGGCAAAATGGCATACAATTGCCATT
TCCATAATTGCAATTGTATGCCATTTTCAATATAAAAAGTGCAATTGTATGCCATTAATGCTTCC
ATAATGGCATACAATTGCCATTTCCATAATTGCAATTAGATGCCATTAGTGCTAACCATACAAAA
ATATGCCTCGTCTCGAAGAGAAAGGTTAAAATCCCTAAAGCAATTCCGGTAATCAGAGCTATCGG
CATTACCGCTGTGGGAGGGACGGAAGAACTCCTTGCCCTAAGACT
Found at i:345588 original size:49 final size:48
Alignment explanation
Indices: 345511--345633 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 48
345501 TTGTATGTCT
** * *
345511 CTCACTTGACAAAC-AAATGCCATTAGTACTTTCCATATGC-CATTAGTA
1 CTCACTT-ACAAACAAAATGCCATTAGTACTCACCATA-CCACATGAGTA
*
345559 CTCACTGTACAAACAAAATGCCATTAGTACTCACTATACCAACATGAGTA
1 CTCACT-TACAAACAAAATGCCATTAGTACTCACCATACC-ACATGAGTA
*
345609 CTCACTATACCAACAAAATGCCATT
1 CTCACT-TACAAACAAAATGCCATT
345634 TTCCATACCA
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
48 13 0.20
49 21 0.33
50 30 0.47
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.27
Consensus pattern (48 bp):
CTCACTTACAAACAAAATGCCATTAGTACTCACCATACCACATGAGTA
Left flanking sequence: Indices 345011 -- 345510
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGA
CAACAAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACA
AAATGCTATTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCAC
CATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCT
Right flanking sequence: Indices 345634 -- 346133
TTCCATACCAACAGGACTAATGACAAGTGTATGCCATTAGTACTTTTGAAGGAAAAGAAAAAGCA
AAAGGGCAATTGTATGCCATTAGTATTGACTATTACATAAAGAAGTATGCCATTAGTGCTCACCA
TACCAAGAATTGTATGCTATTAGTACTGACTATCCAAAAAATGGAAAGGTGATGTCAAGGTTATG
GAAAGGAAAGGCAAAATGGCATACAATTGCCATTTCCATAATTGCAATTGTATGCCATTTTCAAT
ATAAAAAGTGCAATTGTATGCCATTAATGCTTCCATAATGGCATACAATTGCCATTTCCATAATT
GCAATTAGATGCCATTAGTGCTAACCATACAAAAATATGCCTCGTCTCGAAGAGAAAGGTTAAAA
TCCCTAAAGCAATTCCGGTAATCAGAGCTATCGGCATTACCGCTGTGGGAGGGACGGAAGAACTC
CTTGCCCTAAGACTGACTGAAGAAGATGGCATCAAGCCCGATTGA
Found at i:345610 original size:21 final size:21
Alignment explanation
Indices: 345584--345623 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
345574 AAATGCCATT
345584 AGTACTCACTATACCAACATG
1 AGTACTCACTATACCAACATG
345605 AGTACTCACTATACCAACA
1 AGTACTCACTATACCAACA
345624 AAATGCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.30, G:0.07, T:0.23
Consensus pattern (21 bp):
AGTACTCACTATACCAACATG
Left flanking sequence: Indices 345084 -- 345583
ACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCTA
TTAGTACTCACTTGACAACAAATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAA
GAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTA
TGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTA
CTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATT
Right flanking sequence: Indices 345624 -- 346123
AAATGCCATTTTCCATACCAACAGGACTAATGACAAGTGTATGCCATTAGTACTTTTGAAGGAAA
AGAAAAAGCAAAAGGGCAATTGTATGCCATTAGTATTGACTATTACATAAAGAAGTATGCCATTA
GTGCTCACCATACCAAGAATTGTATGCTATTAGTACTGACTATCCAAAAAATGGAAAGGTGATGT
CAAGGTTATGGAAAGGAAAGGCAAAATGGCATACAATTGCCATTTCCATAATTGCAATTGTATGC
CATTTTCAATATAAAAAGTGCAATTGTATGCCATTAATGCTTCCATAATGGCATACAATTGCCAT
TTCCATAATTGCAATTAGATGCCATTAGTGCTAACCATACAAAAATATGCCTCGTCTCGAAGAGA
AAGGTTAAAATCCCTAAAGCAATTCCGGTAATCAGAGCTATCGGCATTACCGCTGTGGGAGGGAC
GGAAGAACTCCTTGCCCTAAGACTGACTGAAGAAGATGGCATCAA
Found at i:347893 original size:28 final size:28
Alignment explanation
Indices: 347702--347883 Score: 348
Period size: 28 Copynumber: 6.5 Consensus size: 28
347692 TTCCTTCAAA
347702 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
347730 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
347758 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
347786 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
347814 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
347842 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
347870 AGTACTAATGGCAT
1 AGTACTAATGGCAT
347884 ACAATTGTCA
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 151 0.99
29 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 347202 -- 347701
TGTCCAGCAAAAGGAGCTAGCAATCTCATGTACTCCGCTTCGTCCCTTGAATCACGTGCATATAG
GAATCTCATTCATCACTCACGCAACCTTTCCTTTGGTAGCCTTTGGAAAAGTTGGATCGGAGACT
ATCAAACAGTCTCTTTTTTCTTGGGATAACCAATATCAAGATTCCCTCTGGCGGGGAAGGCGCAA
ACAGTGGATTCCGTGCATTCATTTGTTCTTGCAAACATCCTTTTTGTTTGTCCTAACTGCGCATT
TGAAGCTTCTTCTATCAAAGAGCTTGGGCATCCTTCGATGAGTGGGTCCGGAAAGAGACTGAAGG
CATCCCTATGTGGTTAACATTTCCCTGAGGTGCCTTTTTTGGTATTAATGTGATAGTCAGTACTA
ATGGCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAATGGCATGTAATGTCATAGTAAAT
ACTAATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCAAA
Right flanking sequence: Indices 347884 -- 348383
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Found at i:348001 original size:43 final size:43
Alignment explanation
Indices: 347953--348036 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
347943 CTGATCTTTC
* * *
347953 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
347996 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
348037 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 347453 -- 347952
CTGCGCATTTGAAGCTTCTTCTATCAAAGAGCTTGGGCATCCTTCGATGAGTGGGTCCGGAAAGA
GACTGAAGGCATCCCTATGTGGTTAACATTTCCCTGAGGTGCCTTTTTTGGTATTAATGTGATAG
TCAGTACTAATGGCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAATGGCATGTAATGTC
ATAGTAAATACTAATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCAAAAGTACTAATGG
CATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 348037 -- 348536
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACA
GTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
Found at i:348076 original size:16 final size:16
Alignment explanation
Indices: 348055--348085 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
348045 CATTCTCATT
348055 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
348071 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
348086 AGAAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 347555 -- 348054
GGTGCCTTTTTTGGTATTAATGTGATAGTCAGTACTAATGGCATACAATTGCAATTTCTCCTACC
TTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACTAATGACATACAATTGCCCTTTTGCT
TTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 348086 -- 348585
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTT
CAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
Found at i:348102 original size:24 final size:24
Alignment explanation
Indices: 348070--348155 Score: 119
Period size: 24 Copynumber: 3.8 Consensus size: 24
348060 TGACCTTTCA
348070 GAGTCCTGACCTTTCAAGAAGAAT
1 GAGTCCTGACCTTTCAAGAAGAAT
348094 GAGTCCTGACCTTTC---AAG-A-
1 GAGTCCTGACCTTTCAAGAAGAAT
* *
348113 CAGTCTTGACCTTTCAAGAAGAAT
1 GAGTCCTGACCTTTCAAGAAGAAT
348137 GAGTCCTGACCTTTCAAGA
1 GAGTCCTGACCTTTCAAGA
348156 CAGTCTTGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 32 0.60
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (24 bp):
GAGTCCTGACCTTTCAAGAAGAAT
Left flanking sequence: Indices 347570 -- 348069
ATTAATGTGATAGTCAGTACTAATGGCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAAT
GGCATGTAATGTCATAGTAAATACTAATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCA
AAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCAT
GAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
Right flanking sequence: Indices 348156 -- 348655
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
Found at i:348122 original size:19 final size:19
Alignment explanation
Indices: 348055--348160 Score: 74
Period size: 24 Copynumber: 5.2 Consensus size: 19
348045 CATTCTCATT
348055 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
348071 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
348095 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* *
348114 AGTCTTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
348138 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
348157 AGTC
1 AGTC
348161 TTGATCTTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
16 14 0.19
19 17 0.24
20 4 0.06
21 6 0.08
22 3 0.04
23 1 0.01
24 27 0.38
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 347555 -- 348054
GGTGCCTTTTTTGGTATTAATGTGATAGTCAGTACTAATGGCATACAATTGCAATTTCTCCTACC
TTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACTAATGACATACAATTGCCCTTTTGCT
TTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 348161 -- 348660
TTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
Found at i:348137 original size:43 final size:43
Alignment explanation
Indices: 348055--348169 Score: 191
Period size: 43 Copynumber: 2.7 Consensus size: 43
348045 CATTCTCATT
*
348055 AGTCCTGACCTTTC-AG--AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATG
348095 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATG
*
348138 AGTCCTGACCTTTCAAGACAGTCTTGATCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
348170 TTGGTAAGGT
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
40 14 0.20
41 2 0.03
43 54 0.77
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATG
Left flanking sequence: Indices 347555 -- 348054
GGTGCCTTTTTTGGTATTAATGTGATAGTCAGTACTAATGGCATACAATTGCAATTTCTCCTACC
TTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACTAATGACATACAATTGCCCTTTTGCT
TTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 348170 -- 348669
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
Found at i:348169 original size:19 final size:19
Alignment explanation
Indices: 348095--348169 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
348085 AAGAAGAATG
*
348095 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
348114 AGTCTTGACCTTTCAAGAAGAATG
1 AGTCTTGACCTTTC---AAG-A-C
*
348138 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
348157 AGTCTTGATCTTT
1 AGTCTTGACCTTT
348170 TTGGTAAGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 24 0.53
20 1 0.02
21 3 0.07
22 3 0.07
23 1 0.02
24 13 0.29
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 347595 -- 348094
GCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACT
AATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCA
CAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCC
TGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTC
TCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 348170 -- 348669
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
Found at i:348185 original size:43 final size:42
Alignment explanation
Indices: 348095--348307 Score: 133
Period size: 43 Copynumber: 5.2 Consensus size: 42
348085 AAGAAGAATG
*** * *
348095 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATG
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
348138 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
348181 AGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
348219 AGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
348257 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
348300 AGTACTGA
1 AGTCCTGA
348308 TGACATACAA
Statistics
Matches: 130, Mismatches: 26, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 11 0.08
37 3 0.02
38 21 0.16
39 3 0.02
41 1 0.01
42 2 0.02
43 86 0.66
44 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 347595 -- 348094
GCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACT
AATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCA
CAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCC
TGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTC
TCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 348308 -- 348807
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:348431 original size:24 final size:19
Alignment explanation
Indices: 348385--348460 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
348375 CTTCCATAAT
348385 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
348404 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
348427 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
348447 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
348461 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 347885 -- 348384
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 348461 -- 348960
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:348474 original size:43 final size:42
Alignment explanation
Indices: 348384--348620 Score: 192
Period size: 43 Copynumber: 5.8 Consensus size: 42
348374 CCTTCCATAA
*** *
348384 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
348427 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * * * *
348470 TCAGTCCTGACCTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
348508 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
348546 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
*
348589 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTT
348621 CCATTTTTGG
Statistics
Matches: 155, Mismatches: 26, Indels: 28
0.74 0.12 0.13
Matches are distributed among these distances:
33 10 0.06
37 3 0.02
38 21 0.14
39 3 0.02
41 19 0.12
42 3 0.02
43 93 0.60
44 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 347884 -- 348383
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 348621 -- 349120
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Found at i:348552 original size:76 final size:78
Alignment explanation
Indices: 348418--348576 Score: 223
Period size: 76 Copynumber: 2.0 Consensus size: 78
348408 CTTGACCTTT
348418 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
*
348483 TGAAATACAGTATTGA
63 TGAAAGACAGTATTGA
* * * *
348499 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
*
348562 AAGACAGTCTTGA
66 AAGACAGTATTGA
348575 CC
1 CC
348577 TTTTTGATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
76 51 0.71
77 2 0.03
81 19 0.26
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AAGACAGTATTGA
Left flanking sequence: Indices 347918 -- 348417
CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 348577 -- 349076
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGT
Found at i:348748 original size:43 final size:42
Alignment explanation
Indices: 348701--348853 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
348691 ACCTTTCAAG
348701 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
348744 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
348779 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
348820 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
348854 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 348201 -- 348700
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 348854 -- 349353
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:348837 original size:298 final size:284
Alignment explanation
Indices: 348095--348772 Score: 792
Period size: 291 Copynumber: 2.3 Consensus size: 284
348085 AAGAAGAATG
* * **
348095 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTGAAAGACAGT
* * * * *
348160 CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
66 CTTGA-C---CTAGTAAGATCAGTCCTGAC--TCAAATA-AGTATTGACCAGAAGAATCAGTCCT
* *
348225 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
124 GATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
* *
348290 TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATA
189 TGATAAGGTCAGTACTGATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATA
*
348355 CAATTGCAATTGGTCCTGTCCTTCCATAATC
254 CAATTGCAATTGGTCCTGTCCTTCCATAATA
**
348386 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTGAAAGACAGT
* * *
348451 CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCT
66 CTTGACC----TAGTAAGATCAGTCCTGA-C-TCAAATA-AGTATTGACCAGAAGAATCAGTCCT
* *
348516 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
124 GATAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
** ** * *
348581 TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATT-TTTGGTCAGGTGAGTACTA
189 TGATAAGGTCAGTACTGATGAC-AGACA--AATGA---GT-C-TTGTATGGTCAGGTGAGTACTA
348645 ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-A
246 ATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATA
*** * *
348684 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGAAATACA
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATCAGTCCTGACCT-TGAAAGACA
348747 GTCTTGACC-AG-AAGAATCAGTCCTGA
64 GTCTTGACCTAGTAAG-ATCAGTCCTGA
348773 TCAGATAGTC
Statistics
Matches: 347, Mismatches: 23, Indels: 32
0.86 0.06 0.08
Matches are distributed among these distances:
290 1 0.00
291 202 0.58
292 8 0.02
293 11 0.03
294 3 0.01
297 3 0.01
298 112 0.32
299 7 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (284 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTGAAAGACAGT
CTTGACCTAGTAAGATCAGTCCTGACTCAAATAAGTATTGACCAGAAGAATCAGTCCTGATAAGA
CAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATA
Left flanking sequence: Indices 347595 -- 348094
GCATACAATTGCAATTTCTCCTACCTTCACAAAGACTAATGGCATGTAATGTCATAGTAAATACT
AATGACATACAATTGCCCTTTTGCTTTTTCTTTTCCTTCAAAAGTACTAATGGCATTTGTTTGCA
CAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCC
TGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTC
TCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 348773 -- 349272
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTT
Found at i:348924 original size:16 final size:16
Alignment explanation
Indices: 348900--348930 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
348890 CATTCTCATT
348900 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
348916 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
348931 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 348400 -- 348899
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 348931 -- 349430
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
Found at i:349096 original size:43 final size:43
Alignment explanation
Indices: 349049--349162 Score: 201
Period size: 43 Copynumber: 2.7 Consensus size: 43
349039 CTGACCTTTC
* * *
349049 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
349092 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
349135 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
349163 GAGTACTAAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 348549 -- 349048
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 349163 -- 349662
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:349105 original size:19 final size:19
Alignment explanation
Indices: 349078--349148 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
349068 TGGTCAGGTT
349078 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
349097 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
349121 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
349140 AGTCTTGAC
1 AGTCCTGAC
349149 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 348578 -- 349077
TTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 349149 -- 349648
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:349129 original size:24 final size:24
Alignment explanation
Indices: 349096--349162 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 24
349086 CTGTGAAAGA
349096 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
349120 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
349139 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
349163 GAGTACTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 9 0.28
20 3 0.09
21 4 0.12
22 4 0.12
23 3 0.09
24 9 0.28
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 348596 -- 349095
TGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
Right flanking sequence: Indices 349163 -- 349662
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:349393 original size:43 final size:42
Alignment explanation
Indices: 349346--349498 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
349336 ACCTTTCAAG
349346 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
349389 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
349424 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
349465 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
349499 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 348846 -- 349345
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 349499 -- 349998
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGT
Found at i:349604 original size:19 final size:19
Alignment explanation
Indices: 349576--349859 Score: 135
Period size: 19 Copynumber: 13.7 Consensus size: 19
349566 CTTCCATAAT
*
349576 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
349595 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
349618 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
349638 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACC--TTT--CAA-GA
* ** *
349662 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
**
349681 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
349699 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
349719 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
349738 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
349760 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
349783 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
349803 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
349826 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
349846 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
349860 TTGGTAAGGT
Statistics
Matches: 206, Mismatches: 28, Indels: 62
0.70 0.09 0.21
Matches are distributed among these distances:
17 5 0.02
18 1 0.00
19 95 0.46
20 9 0.04
21 15 0.07
22 17 0.08
23 5 0.02
24 59 0.29
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 349076 -- 349575
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 349860 -- 350359
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTC
AAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATCCTGACCTTTCAATAACATCCATCC
CGTCATTCCTTATTGCGCACTTCGGTTTGAATCAGAATCGGAGCA
Found at i:349622 original size:24 final size:24
Alignment explanation
Indices: 349573--349637 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
349563 GTCCTTCCAT
349573 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
349594 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
349616 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
349638 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 349073 -- 349572
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 349638 -- 350137
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
Found at i:349634 original size:43 final size:43
Alignment explanation
Indices: 349573--349991 Score: 443
Period size: 43 Copynumber: 9.9 Consensus size: 43
349563 GTCCTTCCAT
349573 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
349616 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* ** *
349660 -GTCAGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * *
349697 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
349738 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
349781 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
349824 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * * ** *
349868 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAG
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAG
* *
349911 -GTCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCAAGAAG
* * *
349953 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA
349992 AAAAGGTGAG
Statistics
Matches: 321, Mismatches: 37, Indels: 36
0.81 0.09 0.09
Matches are distributed among these distances:
37 3 0.01
38 25 0.08
39 1 0.00
41 34 0.11
42 17 0.05
43 227 0.71
44 14 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 349073 -- 349572
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 349992 -- 350491
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATCCTGACCTTTCAATAACATCCATCCCG
TCATTCCTTATTGCGCACTTCGGTTTGAATCAGAATCGGAGCAATCTCTAGTTTCGAATCTAGTC
TCGGCATCAATCCCAGTCCCTTAGTCAAAGCCTTCAAGCTCAATCCCAAAAAAAAGCTCTAGTCC
TAGAAAAAGACTTCAAAGAAGTAGCTCGTGGAACTGAGTTCCGCT
Found at i:349793 original size:24 final size:23
Alignment explanation
Indices: 349760--349845 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
349750 GATTTCAAGA
*
349760 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
349784 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
*
349803 CAGTCTTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
349827 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
349846 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.31
20 1 0.02
23 1 0.02
24 35 0.65
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 349260 -- 349759
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 349846 -- 350345
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGAT
AGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACA
GTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATCCTGACCTTTC
AATAACATCCATCCCGTCATTCCTTATTGCGCACTTCGGTTTGAA
Found at i:349917 original size:24 final size:22
Alignment explanation
Indices: 349842--349945 Score: 76
Period size: 19 Copynumber: 4.8 Consensus size: 22
349832 CTGACCTTTC
349842 AAGACAGTCTTGACCTTTTTGGTA
1 AAGACAGTCTTGACCTTTTT-G-A
* ** *
349866 AGGTTAGTCCTGA-C--TTTGA
1 AAGACAGTCTTGACCTTTTTGA
349885 AAGACAGTCTTGACCTTTTTGA
1 AAGACAGTCTTGACCTTTTTGA
* *
349907 TAAGGTCAGTCCTGA-C--TTTGA
1 -AA-GACAGTCTTGACCTTTTTGA
349928 AAGACAGTCTTGACCTTT
1 AAGACAGTCTTGACCTTT
349946 CAAGAAGAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 18
0.67 0.13 0.20
Matches are distributed among these distances:
19 19 0.32
20 5 0.08
21 8 0.13
22 6 0.10
23 4 0.07
24 18 0.30
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (22 bp):
AAGACAGTCTTGACCTTTTTGA
Left flanking sequence: Indices 349342 -- 349841
CAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 349946 -- 350445
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCC
TGATCTTTCCATAATTCATCCTGACCTTTCAATAACATCCATCCCGTCATTCCTTATTGCGCACT
TCGGTTTGAATCAGAATCGGAGCAATCTCTAGTTTCGAATCTAGTCTCGGCATCAATCCCAGTCC
CTTAGTCAAAGCCTTCAAGCTCAATCCCAAAAAAAAGCTCTAGTC
Found at i:349950 original size:19 final size:19
Alignment explanation
Indices: 349928--349991 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 19
349918 CTGACTTTGA
*
349928 AAGACAGTCTTGACCTTTC
1 AAGACAGTCTTGATCTTTC
*
349947 AAGAAGAATCAGTCCTGATCTTTC
1 ---AAG-A-CAGTCTTGATCTTTC
*
349971 AAGATAGTCTTGATCTTTC
1 AAGACAGTCTTGATCTTTC
349990 AA
1 AA
349992 AAAAGGTGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
19 15 0.42
20 1 0.03
21 3 0.08
22 3 0.08
23 1 0.03
24 13 0.36
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (19 bp):
AAGACAGTCTTGATCTTTC
Left flanking sequence: Indices 349428 -- 349927
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGAT
TTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
Right flanking sequence: Indices 349992 -- 350491
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATCCTGACCTTTCAATAACATCCATCCCG
TCATTCCTTATTGCGCACTTCGGTTTGAATCAGAATCGGAGCAATCTCTAGTTTCGAATCTAGTC
TCGGCATCAATCCCAGTCCCTTAGTCAAAGCCTTCAAGCTCAATCCCAAAAAAAAGCTCTAGTCC
TAGAAAAAGACTTCAAAGAAGTAGCTCGTGGAACTGAGTTCCGCT
Found at i:350043 original size:19 final size:19
Alignment explanation
Indices: 350021--350095 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
350011 CATACAAATG
350021 AGTCTTGACCTTTCAAAAC
1 AGTCTTGACCTTTCAAAAC
*
350040 AGTCTTCACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC---AA-AA-C
* *
350064 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAAAC
*
350083 AGTCTTGATCTTT
1 AGTCTTGACCTTT
350096 TTGGTAAGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 25 0.56
20 1 0.02
21 2 0.04
22 2 0.04
23 2 0.04
24 13 0.29
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAAAC
Left flanking sequence: Indices 349521 -- 350020
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAA
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGAT
AGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 350096 -- 350595
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATC
CTGACCTTTCAATAACATCCATCCCGTCATTCCTTATTGCGCACTTCGGTTTGAATCAGAATCGG
AGCAATCTCTAGTTTCGAATCTAGTCTCGGCATCAATCCCAGTCCCTTAGTCAAAGCCTTCAAGC
TCAATCCCAAAAAAAAGCTCTAGTCCTAGAAAAAGACTTCAAAGAAGTAGCTCGTGGAACTGAGT
TCCGCTAACTGCTTCTTGCTAACAAAGCTGTCAAATTCAATGAATGTGTTTGCGTTCTCTCTTCT
TAGTCTACGATTATCCCTGCTCTTCCTCAGATGTGGATATCTTGA
Found at i:350109 original size:43 final size:42
Alignment explanation
Indices: 350062--350233 Score: 121
Period size: 43 Copynumber: 4.2 Consensus size: 42
350052 TCAAGAAGAA
*
350062 TCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGATCTTTTTGGTAAGG
* * ** *
350105 TCAGTCCTGACTGTGAAATACAGTCTTGA-C----CAG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGATCTTTTTGGTAAG-G
* *
350143 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGATCTTTTTGGTAAGG
* * *
350181 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGATCTTTTTGGTAAGG
* *
350224 TGAGTACTGA
1 TCAGTCCTGA
350234 TGACATACAA
Statistics
Matches: 96, Mismatches: 20, Indels: 26
0.68 0.14 0.18
Matches are distributed among these distances:
33 10 0.10
34 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 54 0.56
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGATCTTTTTGGTAAGG
Left flanking sequence: Indices 349562 -- 350061
TGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAA
Right flanking sequence: Indices 350234 -- 350733
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGATCTTTCCATAATTCATCCTGACCTT
TCAATAACATCCATCCCGTCATTCCTTATTGCGCACTTCGGTTTGAATCAGAATCGGAGCAATCT
CTAGTTTCGAATCTAGTCTCGGCATCAATCCCAGTCCCTTAGTCAAAGCCTTCAAGCTCAATCCC
AAAAAAAAGCTCTAGTCCTAGAAAAAGACTTCAAAGAAGTAGCTCGTGGAACTGAGTTCCGCTAA
CTGCTTCTTGCTAACAAAGCTGTCAAATTCAATGAATGTGTTTGCGTTCTCTCTTCTTAGTCTAC
GATTATCCCTGCTCTTCCTCAGATGTGGATATCTTGACCTGGTCGAAAGTAGAAATGTGTGACGG
TCATTCCTTCAAGAAATAGCAGTTGATTCTCAGAGACCGTATTCAAGAGTTGCCAAAGAGGCCTT
CCTCACAGCGCATTCTGTGCCATTGATTCTAGCACACCGGATGAA
Found at i:350187 original size:76 final size:78
Alignment explanation
Indices: 350055--350211 Score: 237
Period size: 76 Copynumber: 2.0 Consensus size: 78
350045 TCACCTTTCA
350055 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
*
350120 AAATACAGTCTTGACC
63 AAAGACAGTCTTGACC
* * *
350136 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
350199 GACAGTCTTGACC
66 GACAGTCTTGACC
350212 TTTTTGATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 53 0.74
77 2 0.03
81 17 0.24
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACC
Left flanking sequence: Indices 349555 -- 350054
TTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACT
GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCA
Right flanking sequence: Indices 350212 -- 350711
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGATCT
TTCCATAATTCATCCTGACCTTTCAATAACATCCATCCCGTCATTCCTTATTGCGCACTTCGGTT
TGAATCAGAATCGGAGCAATCTCTAGTTTCGAATCTAGTCTCGGCATCAATCCCAGTCCCTTAGT
CAAAGCCTTCAAGCTCAATCCCAAAAAAAAGCTCTAGTCCTAGAAAAAGACTTCAAAGAAGTAGC
TCGTGGAACTGAGTTCCGCTAACTGCTTCTTGCTAACAAAGCTGTCAAATTCAATGAATGTGTTT
GCGTTCTCTCTTCTTAGTCTACGATTATCCCTGCTCTTCCTCAGATGTGGATATCTTGACCTGGT
CGAAAGTAGAAATGTGTGACGGTCATTCCTTCAAGAAATAGCAGTTGATTCTCAGAGACCGTATT
CAAGAGTTGCCAAAGAGGCCTTCCTCACAGCGCATTCTGTGCCAT
Found at i:356024 original size:43 final size:43
Alignment explanation
Indices: 355976--356057 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
355966 ATTGAGGAAA
* * *
355976 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
*
356019 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
356058 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 355476 -- 355975
ATTCACGAGCACTAGCTTTCCTGGCTTGGGGGAGTCTTTCAGTAAGCTATCCCACTAATGCAATT
CGATGCTTCCTGCGTCGAAGGAAAGTTCCCTCAAAGCCCCTTATCGAGACACTCTTTCTTAGTCC
CTTTGCCTTCTCCTTTTCGATGCAATCTCTTTTTTCCCCTTAGATGTCACTTCCTCTATCAAAGA
AAAGAGCGTTCCATCAGGAAAGAAAGTCAGCCAAGGAAAGGAAGAACTGCACTTCTAAGCTGGCA
TAAGGGAACGAGTGAAGCGAAAGCGAAGCGAGTGCGCCAACACAAAGCACTAGGAAGAGAATGCA
AGTTGGGAAGGATGATGGAAAGGAAAGGCAAAATGGCAATTCTTTAGGAAAAGTCAGGACTGTTT
TTAAGGGTCAAGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 356058 -- 356557
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
Found at i:356150 original size:28 final size:28
Alignment explanation
Indices: 356127--356246 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
356117 TGACAATTGT
356127 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
356155 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
356183 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
356211 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
356239 ATGCCATT
1 ATGCCATT
356247 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 355627 -- 356126
GCAATCTCTTTTTTCCCCTTAGATGTCACTTCCTCTATCAAAGAAAAGAGCGTTCCATCAGGAAA
GAAAGTCAGCCAAGGAAAGGAAGAACTGCACTTCTAAGCTGGCATAAGGGAACGAGTGAAGCGAA
AGCGAAGCGAGTGCGCCAACACAAAGCACTAGGAAGAGAATGCAAGTTGGGAAGGATGATGGAAA
GGAAAGGCAAAATGGCAATTCTTTAGGAAAAGTCAGGACTGTTTTTAAGGGTCAAGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGACAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 356247 -- 356746
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Found at i:356309 original size:19 final size:19
Alignment explanation
Indices: 356282--356352 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
356272 TATCAAAAAG
356282 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
356301 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
356324 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
356344 GTCAGGACT
1 GTCAAGACT
356353 AACCTTACCA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
19 17 0.40
20 6 0.14
21 2 0.05
22 2 0.05
23 6 0.14
24 9 0.21
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 355782 -- 356281
GCACTAGGAAGAGAATGCAAGTTGGGAAGGATGATGGAAAGGAAAGGCAAAATGGCAATTCTTTA
GGAAAAGTCAGGACTGTTTTTAAGGGTCAAGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 356353 -- 356852
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTT
CCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAA
Found at i:356329 original size:43 final size:43
Alignment explanation
Indices: 356268--356440 Score: 226
Period size: 43 Copynumber: 4.0 Consensus size: 43
356258 ATGAGTACTC
356268 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTG
*
356311 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTG
* *
356354 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
* * ** *
356397 ATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
356440 A
1 A
356441 TTATGGAAGG
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 5 0.04
43 111 0.93
44 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
Left flanking sequence: Indices 355768 -- 356267
TGCGCCAACACAAAGCACTAGGAAGAGAATGCAAGTTGGGAAGGATGATGGAAAGGAAAGGCAAA
ATGGCAATTCTTTAGGAAAAGTCAGGACTGTTTTTAAGGGTCAAGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGACAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 356441 -- 356940
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGA
CAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTA
Found at i:356388 original size:19 final size:19
Alignment explanation
Indices: 356364--356439 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
356354 ACCTTACCAA
356364 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
356383 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
356407 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
356426 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
356440 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 355864 -- 356363
TTTTAAGGGTCAAGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 356440 -- 356939
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTG
ACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGT
Found at i:356682 original size:43 final size:42
Alignment explanation
Indices: 356517--356686 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
356507 TTGTATGTCA
* * * *
356517 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
356560 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
356598 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
356636 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
356679 TCAGGACT
1 TCAGGACT
356687 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 356017 -- 356516
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 356687 -- 357186
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCC
ATATGCCATTAGTACTCACTGTACAAAAATATGCCATTTTCCATCAAAAATTAGTACTGACTCTC
ACAAAAATTGAAAGGAAAGCAAGGCCCTCAGGCTTATGGAATTGATGCTTTCCAGCGCTAGGCCC
CTTATGGAAAGGAAATGATGGAAAGGAAAGACAATTATGGAAAGGTCAGGACTCTCTGGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGA
Found at i:356709 original size:248 final size:252
Alignment explanation
Indices: 356261--356742 Score: 665
Period size: 248 Copynumber: 1.9 Consensus size: 252
356251 ATCAACAATG
* * *
356261 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGG
1 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
* *
356326 TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
66 TCAAGACTATC-TT-AAAGTCAGGACTAACCTTA-C---AAGGTCAAGACTGTCTTCAAAGGTCA
* *** *
356391 GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
125 GGACTGATCCTTCCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
356456 ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
190 ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
356519 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
1 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
* ** * * *
356584 TCAAGACTATC-T-GA-TCAGGACTGATTCTT-C-TGGTCAAGACTGTATTTCACA-GTCAGGAC
66 TCAAGACTATCTTAAAGTCAGGACT-AACCTTACAAGGTCAAGACTGT-CTTCAAAGGTCAGGAC
*
356643 TGA-CCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT-TTTGATGGAAGGACAGGAC
129 TGATCCTT-CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGAC
356706 CAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
192 CAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
356743 AAAATGGAAA
Statistics
Matches: 203, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
247 5 0.02
248 107 0.53
249 4 0.02
252 1 0.00
253 8 0.04
254 5 0.02
256 1 0.00
258 72 0.35
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (252 bp):
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTTAAAGTCAGGACTAACCTTACAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
ATCCTTCCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
Left flanking sequence: Indices 355761 -- 356260
AAGCGAGTGCGCCAACACAAAGCACTAGGAAGAGAATGCAAGTTGGGAAGGATGATGGAAAGGAA
AGGCAAAATGGCAATTCTTTAGGAAAAGTCAGGACTGTTTTTAAGGGTCAAGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGACAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 356743 -- 357242
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTT
CCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATT
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTA
GTACTTTCCATATGCCATTAGTACTCACTGTACAAAAATATGCCATTTTCCATCAAAAATTAGTA
CTGACTCTCACAAAAATTGAAAGGAAAGCAAGGCCCTCAGGCTTATGGAATTGATGCTTTCCAGC
GCTAGGCCCCTTATGGAAAGGAAATGATGGAAAGGAAAGACAATTATGGAAAGGTCAGGACTCTC
TGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAA
Found at i:356842 original size:24 final size:23
Alignment explanation
Indices: 356810--356866 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 23
356800 AGGACTTTCC
356810 GGTCAGGACTCATTCTTCTTGAAA
1 GGTCAGGACTCATTCTT-TTGAAA
356834 GGTCAGGA--C--TCTTTTGAAA
1 GGTCAGGACTCATTCTTTTGAAA
356853 GGTCAGGACTCATT
1 GGTCAGGACTCATT
356867 GCAATTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
19 14 0.48
20 4 0.14
21 1 0.03
22 1 0.03
23 1 0.03
24 8 0.28
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (23 bp):
GGTCAGGACTCATTCTTTTGAAA
Left flanking sequence: Indices 356310 -- 356809
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCC
Right flanking sequence: Indices 356867 -- 357366
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAAATATGCCATTTTCCATCAAAAA
TTAGTACTGACTCTCACAAAAATTGAAAGGAAAGCAAGGCCCTCAGGCTTATGGAATTGATGCTT
TCCAGCGCTAGGCCCCTTATGGAAAGGAAATGATGGAAAGGAAAGACAATTATGGAAAGGTCAGG
ACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTG
TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTT
Found at i:356852 original size:19 final size:20
Alignment explanation
Indices: 356749--356863 Score: 76
Period size: 19 Copynumber: 5.8 Consensus size: 20
356739 ACCAAAAATG
* *
356749 GAAAGGTCAAGACT-GTCTT
1 GAAAGGTCAGGACTCTTCTT
356768 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGA--C--TCTTCTT
**
356792 GAAAGGTCAGGACT-TTCCG
1 GAAAGGTCAGGACTCTTCTT
** * ** *
356811 GTCAGGAC-TCATTCTTCTT
1 GAAAGGTCAGGACTCTTCTT
356830 GAAAGGTCAGGACTCTT-TT
1 GAAAGGTCAGGACTCTTCTT
356849 GAAAGGTCAGGACTC
1 GAAAGGTCAGGACTC
356864 ATTGCAATTG
Statistics
Matches: 71, Mismatches: 18, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
18 2 0.03
19 44 0.62
20 6 0.08
21 1 0.01
22 1 0.01
23 1 0.01
24 16 0.23
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (20 bp):
GAAAGGTCAGGACTCTTCTT
Left flanking sequence: Indices 356249 -- 356748
CCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 356864 -- 357363
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAAATATGCCATTTTCCATCAA
AAATTAGTACTGACTCTCACAAAAATTGAAAGGAAAGCAAGGCCCTCAGGCTTATGGAATTGATG
CTTTCCAGCGCTAGGCCCCTTATGGAAAGGAAATGATGGAAAGGAAAGACAATTATGGAAAGGTC
AGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACC
CTTTTGAAAGGTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACC
Found at i:357292 original size:43 final size:43
Alignment explanation
Indices: 357244--357325 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
357234 ATTGAGGAAA
* * *
357244 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
*
357287 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
357326 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 356744 -- 357243
AAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTC
CGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAG
TACTTTCCATATGCCATTAGTACTCACTGTACAAAAATATGCCATTTTCCATCAAAAATTAGTAC
TGACTCTCACAAAAATTGAAAGGAAAGCAAGGCCCTCAGGCTTATGGAATTGATGCTTTCCAGCG
CTAGGCCCCTTATGGAAAGGAAATGATGGAAAGGAAAGACAATTATGGAAAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGACAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 357326 -- 357825
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCA
AACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGA
TGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCAC
TATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTG
Found at i:357418 original size:28 final size:28
Alignment explanation
Indices: 357395--357514 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
357385 TGACAATTGT
357395 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
357423 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
357451 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
357479 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
357507 ATGCCATT
1 ATGCCATT
357515 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.03
28 84 0.93
29 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 356895 -- 357394
ACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTGTACAAAAATATGCCATTTTCCATCAAAAATTAGTACTGACTCTCACAAAAATTGAAA
GGAAAGCAAGGCCCTCAGGCTTATGGAATTGATGCTTTCCAGCGCTAGGCCCCTTATGGAAAGGA
AATGATGGAAAGGAAAGACAATTATGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGACAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 357515 -- 358014
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCC
ATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
ACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
Found at i:357776 original size:28 final size:28
Alignment explanation
Indices: 357736--357790 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
357726 TTGCAATTGT
*
357736 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTATACAAACAA
*
357764 ATGCCATTAGTACTCACTATACCAACA
1 ATGCCATTAGTACTCACTATACAAACA
357791 TGAGTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTATACAAACAA
Left flanking sequence: Indices 357236 -- 357735
TGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCT
TTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATAC
AAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGT
Right flanking sequence: Indices 357791 -- 358290
TGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGT
TCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGA
GGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACA
GGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTAC
Done.