Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 10 of 20
Found at i:279775 original size:43 final size:42
Alignment explanation
Indices: 279020--279888 Score: 323
Period size: 43 Copynumber: 20.3 Consensus size: 42
279010 ACCTTACCAA
*
279020 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
* * * **
279063 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT-TG
* * ** ***
279104 AAAGGTCAAGACTGTCTTTCACAGTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CTTG
*
279147 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
*
279190 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
* * * **
279233 AAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTGAGGACTTTCTTG
1 AAAGGTCAAGACT-GTCT-T-G-AAAGTCAGG-A-CTGA-TTC-TTCTTG
*** **
279282 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAGAATGATTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGAC---TGATTCTTCTTG
* * * * * * * * **
279325 AGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTCA-CCTTATCAA
1 A--AA-G---GTCAAGACT-GTCTTGAAAG---TCAGGACTGATTCTTCT-TG
* ** ***
279376 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CTTG
* *
279419 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCTTG
* * * * ***
279455 ---GGTCAATACTGTATTTCAAAGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGATTCTT-CTTG
*
279495 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
* * * **
279538 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCT-TG
* ** ***
279579 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGATTCTT-CTTG
* *
279622 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCTTG
* * * ** ***
279658 ---GGTCAAGACTGTATTTCACAGTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGATTCTT-CTTG
*
279698 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
279741 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
* * * *
279784 AAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTCAGGACTCTT-TTG
1 AAAGGTCAAGACT-GTCT-T-G-AAAGTCAGG-A---C-TGATTCTTCTTG
*
279833 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGATTCTTCTTG
*
279876 AAAGGTCAGGACT
1 AAAGGTCAAGACT
279889 CATTCTTCTT
Statistics
Matches: 631, Mismatches: 112, Indels: 166
0.69 0.12 0.18
Matches are distributed among these distances:
33 19 0.03
35 2 0.00
37 9 0.01
38 38 0.06
39 10 0.02
40 6 0.01
41 52 0.08
42 30 0.05
43 316 0.50
44 24 0.04
45 28 0.04
46 18 0.03
47 9 0.01
48 4 0.01
49 43 0.07
50 9 0.01
51 4 0.01
52 4 0.01
54 6 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 278520 -- 279019
AACAAAGCACTCGCAACTTTGAATTGAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGACG
ATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 279889 -- 280388
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGT
GCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTA
GTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
Found at i:280004 original size:20 final size:20
Alignment explanation
Indices: 279979--280060 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 20
279969 TGACAACAAA
279979 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
279999 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
280027 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
280047 ATGCCATTAGTACT
1 ATGCCATTAGTACT
280061 CACTGTACAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
20 30 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.31
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 279479 -- 279978
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATG
GAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 280061 -- 280560
CACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACT
CTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
Found at i:280039 original size:28 final size:27
Alignment explanation
Indices: 279999--280091 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 27
279989 TACTTTCCAT
279999 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACTCACTGT-CAAACAA
*
280027 ATGCCATTAGTACT---T-TC---CAT
1 ATGCCATTAGTACTCACTGTCAAACAA
*
280047 ATGCCATTAGTACTCACTGTACAAACCA
1 ATGCCATTAGTACTCACTGT-CAAACAA
*
280075 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
280092 CATACCAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
20 16 0.30
23 2 0.04
24 2 0.04
25 2 0.04
28 31 0.58
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTGTCAAACAA
Left flanking sequence: Indices 279499 -- 279998
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGG
ACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 280092 -- 280591
CATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
Found at i:280095 original size:48 final size:48
Alignment explanation
Indices: 279977--280088 Score: 197
Period size: 48 Copynumber: 2.3 Consensus size: 48
279967 CTTGACAACA
*
279977 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
280025 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
1 AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
* *
280073 CAATGTCATTAGTACT
1 AAATGCCATTAGTACT
280089 CACCATACCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (48 bp):
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
Left flanking sequence: Indices 279477 -- 279976
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTA
TGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
TAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
Right flanking sequence: Indices 280089 -- 280588
CACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
Found at i:280296 original size:43 final size:43
Alignment explanation
Indices: 280232--280387 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 43
280222 TTGTATGTCA
* * *
280232 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
280275 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
** * *
280313 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
*
280351 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
280388 GAAAGGTCAG
Statistics
Matches: 83, Mismatches: 18, Indels: 24
0.66 0.14 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 16 0.19
39 6 0.07
41 1 0.01
43 44 0.53
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 279732 -- 280231
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTAC
TTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 280388 -- 280887
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
Found at i:280350 original size:76 final size:78
Alignment explanation
Indices: 280254--280665 Score: 291
Period size: 76 Copynumber: 5.0 Consensus size: 78
280244 TTATCAAAAA
* *
280254 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
280317 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
280330 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
* * ***
280395 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * * *
280412 GGACAGGACCAATTGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
1 GGTCAAGA-C---TG-TATT-TCA---CAGTCAGGACTAACCTTACCAAAAA--G--A--TCAAG
* * *
280475 ACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
51 ACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
280509 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
280572 GACTGATTCTTCT
66 GACTGATTCTTCT
*
280585 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
280650 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
280666 TGAAAGGTCA
Statistics
Matches: 260, Mismatches: 39, Indels: 69
0.71 0.11 0.19
Matches are distributed among these distances:
76 104 0.40
77 4 0.02
79 4 0.02
80 4 0.02
81 36 0.14
82 6 0.02
83 3 0.01
84 10 0.04
86 3 0.01
87 4 0.02
88 2 0.01
89 19 0.07
90 20 0.08
91 2 0.01
92 3 0.01
93 9 0.03
95 17 0.07
96 3 0.01
97 7 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 279754 -- 280253
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGG
TCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAA
CAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTC
ACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGT
CATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 280666 -- 281165
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAG
GACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATT
GTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTAC
TCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
Found at i:280511 original size:41 final size:43
Alignment explanation
Indices: 280465--280699 Score: 151
Period size: 43 Copynumber: 5.7 Consensus size: 43
280455 CCAAAAATGG
* * * *
280465 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
280506 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
280549 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * *
280584 --TGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* ** ***
280625 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
*
280668 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
280700 CATTCTTCTT
Statistics
Matches: 153, Mismatches: 25, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 6 0.04
38 16 0.10
39 6 0.04
41 17 0.11
42 9 0.06
43 84 0.55
44 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 279965 -- 280464
CACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCAT
ACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 280700 -- 281199
CATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAG
TACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCA
TACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
Found at i:280668 original size:24 final size:22
Alignment explanation
Indices: 280639--280742 Score: 103
Period size: 24 Copynumber: 4.8 Consensus size: 22
280629 GTCAAGACTG
280639 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTG--TCT
*
280663 TCTTGAAAGGTCAAGACTG---
1 TCTTGAAAGGTCAGGACTGTCT
*
280682 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACT--GTCT
*
280706 TCTTGAAAGGTGAGGAC--TCT
1 TCTTGAAAGGTCAGGACTGTCT
280726 T-TTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
280743 CTGAAAGGTC
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
19 31 0.45
20 4 0.06
24 34 0.49
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTGTCT
Left flanking sequence: Indices 280139 -- 280638
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTC
AGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 280743 -- 281242
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAA
AGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAA
CCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAG
Found at i:280672 original size:43 final size:43
Alignment explanation
Indices: 280625--280743 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
280615 ACCTTACCAA
*
280625 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
280668 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * *
280711 AAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
280744 TGAAAGGTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 280125 -- 280624
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 280744 -- 281243
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAA
GGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAAC
CCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
Found at i:280732 original size:19 final size:20
Alignment explanation
Indices: 280625--280744 Score: 102
Period size: 19 Copynumber: 5.8 Consensus size: 20
280615 ACCTTACCAA
* *
280625 AAAGGTCAAGACT-GTCTTG
1 AAAGGTCAGGACTCTTCTTG
280644 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAGGAC----TCTTCTTG
* *
280668 AAAGGTCAAGACT-GTCTTG
1 AAAGGTCAGGACTCTTCTTG
280687 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAGGA--C--TCTTCTTG
*
280711 AAAGGTGAGGACTCTT-TTG
1 AAAGGTCAGGACTCTTCTTG
280730 AAAGGTCAGGACTCT
1 AAAGGTCAGGACTCT
280745 GAAAGGTCAG
Statistics
Matches: 83, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
19 43 0.52
20 5 0.06
21 1 0.01
22 1 0.01
23 2 0.02
24 31 0.37
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (20 bp):
AAAGGTCAGGACTCTTCTTG
Left flanking sequence: Indices 280125 -- 280624
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 280745 -- 281244
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACC
CATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
Found at i:280749 original size:16 final size:17
Alignment explanation
Indices: 280706--280758 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 17
280696 GACTCATTCT
*
280706 TCTTGAAAGGTGAGGAC
1 TCTTGAAAGGTCAGGAC
280723 TCTTTTGAAAGGTCAGGAC
1 TC--TTGAAAGGTCAGGAC
280742 TC-TGAAAGGTCAGGAC
1 TCTTGAAAGGTCAGGAC
280758 T
1 T
280759 AATGAGAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 15 0.45
17 2 0.06
19 16 0.48
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (17 bp):
TCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 280206 -- 280705
GAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
Right flanking sequence: Indices 280759 -- 281258
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCCATGTCATTAGTAC
TCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
Found at i:280914 original size:28 final size:27
Alignment explanation
Indices: 280831--280957 Score: 118
Period size: 28 Copynumber: 4.6 Consensus size: 27
280821 TTGCAATTGT
280831 ATGCCATTAGTACTCACTTGACAACAA
1 ATGCCATTAGTACTCACTTGACAACAA
* *
280858 ATTG-TA-T-GTCTCTCACTTGACAACAAA
1 A-TGCCATTAGT-ACTCACTTGACAAC-AA
280885 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGAC-AACAA
* **
280913 ATGTCATTAGTACTCAC-TGTACAAACCC
1 ATGCCATTAGTACTCACTTG-AC-AACAA
*
280941 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
280958 CATACCAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
25 2 0.02
26 16 0.19
27 8 0.09
28 54 0.64
29 5 0.06
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTTGACAACAA
Left flanking sequence: Indices 280331 -- 280830
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 280958 -- 281457
CATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
Found at i:281077 original size:43 final size:42
Alignment explanation
Indices: 281012--281399 Score: 324
Period size: 43 Copynumber: 9.2 Consensus size: 42
281002 TTGTATGTCA
* * * *
281012 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
281055 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * * * *
281097 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
*
281136 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
281179 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * *
281220 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
281263 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** *** * *
281305 ATCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
281349 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
281392 TCAGGACT
1 TCAGGACT
281400 GATTCTTCTG
Statistics
Matches: 268, Mismatches: 60, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
37 3 0.01
38 17 0.06
39 6 0.02
41 27 0.10
42 30 0.11
43 172 0.64
44 13 0.05
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 280512 -- 281011
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCA
TTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAAACAAATGTCATTAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAA
AAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 281400 -- 281899
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTG
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTT
GAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
Found at i:281132 original size:81 final size:81
Alignment explanation
Indices: 281034--281270 Score: 255
Period size: 81 Copynumber: 2.9 Consensus size: 81
281024 TTATCAAAAA
*
281034 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
281099 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * * *
281115 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
*
281180 CAGGACTGATTTTTCTT
66 CAGGACTGATTCTTC-T
* * * * * * * *
281197 GAAAGGTCAAGACTGT-CTTGAAA-TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
1 ----GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTGA
281260 AAG-TCAGGACT
61 AAGATCAGGACT
281271 AACCTTACCA
Statistics
Matches: 135, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
81 72 0.53
82 1 0.01
84 41 0.30
85 10 0.07
86 11 0.08
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 280534 -- 281033
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGGACTCTTTT
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATAC
AGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGT
ACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 281271 -- 281770
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTT
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
Found at i:281179 original size:19 final size:19
Alignment explanation
Indices: 281155--281219 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
281145 ACCTTACCAA
281155 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
281174 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
281198 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
281217 AAA
1 AAA
281220 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 280655 -- 281154
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAG
GACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
ATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAAT
GTCATTAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACT
TGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 281220 -- 281719
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACT
CATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCT
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATT
Found at i:281392 original size:19 final size:19
Alignment explanation
Indices: 281368--281480 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
281358 ACCTTACCAA
281368 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
281387 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
281407 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
281425 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* * *
281449 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTGTCTTG
281468 AAAGGTCAAGACT
1 AAAGGTCAAGACT
281481 CATTTGTATG
Statistics
Matches: 74, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.05
19 46 0.62
20 1 0.01
21 5 0.07
22 1 0.01
23 1 0.01
24 16 0.22
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 280868 -- 281367
TCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGT
ACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTT
TCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 281481 -- 281980
CATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
Found at i:281415 original size:208 final size:205
Alignment explanation
Indices: 281011--281427 Score: 703
Period size: 208 Copynumber: 2.0 Consensus size: 205
281001 TTTGTATGTC
281011 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
281076 AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGG
66 AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
* *
281141 ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCA
131 ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT---AGGTCA
281206 AGACTGTCTTGAA
193 AGACTGTCTTGAA
*
281219 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
281284 AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAG
66 AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T----GGTCAAGACTGTATTTCACAG
281349 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T-GGT
126 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAGGT
281412 CAAGACTGTCTTGAA
191 CAAGACTGTCTTGAA
281427 A
1 A
281428 GGTCAGGACT
Statistics
Matches: 199, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
208 121 0.61
209 1 0.01
212 1 0.01
213 76 0.38
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (205 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTAGGTCAAGA
CTGTCTTGAA
Left flanking sequence: Indices 280511 -- 281010
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCC
ATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCA
CTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAA
AAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 281428 -- 281927
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
Found at i:281422 original size:38 final size:38
Alignment explanation
Indices: 281371--281446 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
281361 TTACCAAAAA
*
281371 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
281409 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
281447 TGAAAGGTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Left flanking sequence: Indices 280871 -- 281370
CACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACA
AACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCT
TGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 281447 -- 281946
TGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
Found at i:281449 original size:24 final size:24
Alignment explanation
Indices: 281420--281484 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
281410 GTCAAGACTG
281420 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
281444 TCTTGAAAGGTCAGGA--C--TCT
1 TCTTGAAAGGTCAGGACTCATTCT
*
281464 T-TTGAAAGGTCAAGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
281485 TGTATGTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 13 0.36
20 4 0.11
21 1 0.03
22 1 0.03
23 1 0.03
24 16 0.44
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 280920 -- 281419
TAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAG
GACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
Right flanking sequence: Indices 281485 -- 281984
TGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
Found at i:281469 original size:43 final size:43
Alignment explanation
Indices: 281155--281484 Score: 261
Period size: 43 Copynumber: 7.8 Consensus size: 43
281145 ACCTTACCAA
* *
281155 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * * **
281198 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT-TG
* ** ***
281239 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTCATTCTT-CTTG
* * * *
281282 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * ** ***
281325 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTCATTCTT-CTTG
*
281368 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
281409 ---GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * *
281449 AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
281485 TGTATGTCAT
Statistics
Matches: 232, Mismatches: 39, Indels: 32
0.77 0.13 0.11
Matches are distributed among these distances:
38 36 0.16
39 1 0.00
40 3 0.01
41 25 0.11
42 19 0.08
43 136 0.59
44 12 0.05
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 280655 -- 281154
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAG
GACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
ATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAAT
GTCATTAGTACTCACTGTACAAACCCATGTCATTAGTACTCACCATACCAAAAAAGGTCAGGACT
TGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 281485 -- 281984
TGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
Found at i:281588 original size:64 final size:64
Alignment explanation
Indices: 281445--281589 Score: 191
Period size: 64 Copynumber: 2.3 Consensus size: 64
281435 ACTCATTCTT
* * *
281445 CTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
1 CTTGAAAGATCAAGACTCTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
*** * * * *
281509 CCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTT
1 CTTGAAAGATCAAGACTCTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
*
281573 TTTGAAAGATCAAGACT
1 CTTGAAAGATCAAGACT
281590 ATCTTGAAAG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (64 bp):
CTTGAAAGATCAAGACTCTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
Left flanking sequence: Indices 280945 -- 281444
CATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
Right flanking sequence: Indices 281590 -- 282089
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATT
GTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
CATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAA
Found at i:281598 original size:64 final size:63
Alignment explanation
Indices: 281445--281608 Score: 184
Period size: 64 Copynumber: 2.6 Consensus size: 63
281435 ACTCATTCTT
* * *
281445 CTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
1 CTTGAAAGATCAAGACT-ATTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
*** * * * *
281509 CCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTT
1 CTTGAAAGATCAAGACTATT-TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
* * *
281573 TTTGAAAGATCAAGACTATCTTGAAAGATCAGGACT
1 CTTGAAAGATCAAGACTAT-TTGAAAGGTCAAGACT
281609 GATTCTTCTG
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
63 2 0.02
64 78 0.96
65 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (63 bp):
CTTGAAAGATCAAGACTATTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
Left flanking sequence: Indices 280945 -- 281444
CATTAGTACTCACCATACCAAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
Right flanking sequence: Indices 281609 -- 282108
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGA
Found at i:281922 original size:113 final size:116
Alignment explanation
Indices: 281677--281922 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
281667 GACTGTCTTG
*
281677 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
281741 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
281796 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
281860 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
281909 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
281923 TCTTGAAAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 281177 -- 281676
GGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 281923 -- 282422
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTC
CAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTT
Found at i:281936 original size:43 final size:43
Alignment explanation
Indices: 281856--282203 Score: 155
Period size: 43 Copynumber: 8.0 Consensus size: 43
281846 ATTAGTACTC
* * *
281856 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
281899 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
281942 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAG
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---T--G
** ** * *** * * * * * *
281987 AATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 -A-CCTT-ACCAA-AAAGGTCAAGACT-GTCTTGAAAG--GTCAGGACTG
* *
282036 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
* * *
282079 ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* * * * **
282122 ATTCTT--C----TGGTCAATACTGTATTTCAAGGTCAGGACTG
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* *
282160 ACCTTACCAAAAAGGTTAATACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
282203 A
1 A
282204 TTCTTCTTGA
Statistics
Matches: 221, Mismatches: 57, Indels: 54
0.67 0.17 0.16
Matches are distributed among these distances:
37 3 0.01
38 24 0.11
39 1 0.00
40 14 0.06
41 2 0.01
42 10 0.05
43 117 0.53
44 7 0.03
45 10 0.05
46 10 0.05
47 2 0.01
48 1 0.00
49 8 0.04
51 1 0.00
52 5 0.02
54 6 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 281356 -- 281855
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 282204 -- 282703
TTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTA
TACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAA
ATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCTCTATTCATGAGCCACTTTGAATA
ACCATATCTTTCACTCATCAAAATGACATTAACTATGTTATGGCTTCGCTTGACGAGTTCCCTTA
AGAAAGCACGCACTCGCAAAGCGAACAAAGTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTTG
TGCAAAGCCCTAATGCAATTCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACATGAAATTG
GGCAAAGCGAAGCGAGTGCTTTGATCAGGGAACTCGCAACTTTCA
Found at i:281971 original size:16 final size:16
Alignment explanation
Indices: 281950--281980 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
281940 TGATTCTTCT
281950 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
281966 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
281981 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 281450 -- 281949
AAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAA
AGATGAAGACTGTTGTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 281981 -- 282480
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
TAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATG
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTG
CTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTA
TGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTT
TGGCTCTATTCATGAGCCACTTTGAATAACCATATCTTTCACTCA
Found at i:282188 original size:81 final size:81
Alignment explanation
Indices: 282049--282210 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 81
282039 TTATCAAAAA
*
282049 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
282114 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * * * *
282130 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
282195 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
282211 TGAAAGATGA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 281549 -- 282048
TGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 282211 -- 282710
TGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAA
AAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATG
TTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCTCTATTCATGAGCCACTTTGAATAACCATAT
CTTTCACTCATCAAAATGACATTAACTATGTTATGGCTTCGCTTGACGAGTTCCCTTAAGAAAGC
ACGCACTCGCAAAGCGAACAAAGTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGTGCAAAG
CCCTAATGCAATTCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACATGAAATTGGGCAAAG
CGAAGCGAGTGCTTTGATCAGGGAACTCGCAACTTTCAATGGCGT
Found at i:282320 original size:28 final size:28
Alignment explanation
Indices: 282238--282310 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
282228 TTGCAATTGT
282238 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
282266 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
282294 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
282311 CATACCAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 281738 -- 282237
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 282311 -- 282810
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCT
CTATTCATGAGCCACTTTGAATAACCATATCTTTCACTCATCAAAATGACATTAACTATGTTATG
GCTTCGCTTGACGAGTTCCCTTAAGAAAGCACGCACTCGCAAAGCGAACAAAGTCATGAGCAAAG
CCCTACGCTTTGCGAGTGCTTTGTGCAAAGCCCTAATGCAATTCACTCGCAAAGCGTAGGGCTTT
GCTCGTGACGTGACATGAAATTGGGCAAAGCGAAGCGAGTGCTTTGATCAGGGAACTCGCAACTT
TCAATGGCGTCAGGGCAAAGCACACTCGCAAAGCTTTGGCAAARCTCGTGATTGCACAAAGCACT
CGCTTTTCAGTGCTCATGACGTACAATTGACGAGCTTTGCCCACA
Found at i:287153 original size:16 final size:16
Alignment explanation
Indices: 287132--287162 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
287122 AGGACCCTTT
287132 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
287148 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
287163 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 286632 -- 287131
AAAGTCGATGACCAATAGTTGGCGCCCCCTGAGAAACTCGCATTGCGTGAGAGGTTCAGGGGAAA
GAATCCTAAATGGAGCTCTCCGCGCCTCAAGACCGTGAGAAATTGGGGCTAGGCTTTGCTGCCTG
CTGGCTAGTCTCGACTGTAAAGACCGCTGGGAGCAATTTTGTGGGGCGGGACTGACACACAGAAA
CAAAATGAACTTCAAAACCGCTACGAAAGCGACGACTCCGGCCCTTTCCATCCATCTTTTGGTTA
CAATAGCTGTTTTGCGAGACCCAACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGAT
TGCTCGTGACTTTGCGAGTGCTTTGTGCAAAGCCCTACGCTTTGCACAAAGCACTCGCAACTTTG
AATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 287163 -- 287662
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTTTCCATCAACAATGAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGAT
GCCATTTTCCATCACAAAAATGGAAAAATGGCAATTGTATGCCTT
Found at i:287231 original size:43 final size:43
Alignment explanation
Indices: 287183--287264 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
287173 ATTGAGGAAA
* * *
287183 AGTCAGAACTCACCT-TCTCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTGAC-CAAAAAGATCAAGACTGTCTTTCAC
*
287226 AGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTT
287265 GAAAGATCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 286683 -- 287182
AGGTTCAGGGGAAAGAATCCTAAATGGAGCTCTCCGCGCCTCAAGACCGTGAGAAATTGGGGCTA
GGCTTTGCTGCCTGCTGGCTAGTCTCGACTGTAAAGACCGCTGGGAGCAATTTTGTGGGGCGGGA
CTGACACACAGAAACAAAATGAACTTCAAAACCGCTACGAAAGCGACGACTCCGGCCCTTTCCAT
CCATCTTTTGGTTACAATAGCTGTTTTGCGAGACCCAACGTCAATTGATGAGCAAAGCCCACAAA
GCACTCGCAAAGATTGCTCGTGACTTTGCGAGTGCTTTGTGCAAAGCCCTACGCTTTGCACAAAG
CACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGAT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 287265 -- 287764
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAA
GATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCA
ACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAAAAATGGCAATTG
TATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
Found at i:287357 original size:28 final size:28
Alignment explanation
Indices: 287334--287582 Score: 184
Period size: 28 Copynumber: 8.6 Consensus size: 28
287324 TGACAATTGT
287334 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
287362 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
287390 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* * * * ** *
287418 ATGCCATT-TTCCATCAACAATGAGTACTCACC
1 ATGCCATTAGTAC-TC-AC-TTGA-CAAACA-A
* ** ** * ****
287450 ATACCAAAAAGATGAAGACTAATTG-CAATTGT
1 ATGCC-ATTAG-T--ACTC-ACTTGACAAACAA
287482 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
287510 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
287538 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
*
287566 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
287583 CATACCAACA
Statistics
Matches: 176, Mismatches: 33, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
26 2 0.01
27 3 0.02
28 143 0.81
29 2 0.01
30 4 0.02
31 6 0.03
32 8 0.05
33 3 0.02
35 3 0.02
36 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 286834 -- 287333
AACTTCAAAACCGCTACGAAAGCGACGACTCCGGCCCTTTCCATCCATCTTTTGGTTACAATAGC
TGTTTTGCGAGACCCAACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGATTGCTCGT
GACTTTGCGAGTGCTTTGTGCAAAGCCCTACGCTTTGCACAAAGCACTCGCAACTTTGAATGCTG
AAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 287583 -- 288082
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAAAAATG
GCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Found at i:287403 original size:56 final size:56
Alignment explanation
Indices: 287334--287582 Score: 208
Period size: 56 Copynumber: 4.3 Consensus size: 56
287324 TGACAATTGT
287334 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT-TGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGT-ACAAACAA
* *
287390 ATGCCATTAGTACTCACTTGACAAACAAATGCCATT-TTCCATCAACAATGAGTACTCACCATAC
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC-TC-AC--T--GTA--CA--A-A-
287454 CAAA
54 C-AA
* * * ****
287458 AAG--ATGAAG-ACT-AATTG-CAATTGTATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCAT-TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAA
287510 ATGCCATTAGTACTCAC-TGTACAAACAAATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAACAAATGCCATTAGTACTCACTGTACAAACAA
*
287566 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
287583 CATACCAACA
Statistics
Matches: 152, Mismatches: 19, Indels: 44
0.71 0.09 0.20
Matches are distributed among these distances:
52 4 0.03
53 3 0.02
54 8 0.05
55 4 0.03
56 85 0.56
57 4 0.03
59 4 0.03
61 2 0.01
62 1 0.01
63 4 0.03
64 13 0.09
65 7 0.05
66 6 0.04
67 3 0.02
68 4 0.03
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 286834 -- 287333
AACTTCAAAACCGCTACGAAAGCGACGACTCCGGCCCTTTCCATCCATCTTTTGGTTACAATAGC
TGTTTTGCGAGACCCAACGTCAATTGATGAGCAAAGCCCACAAAGCACTCGCAAAGATTGCTCGT
GACTTTGCGAGTGCTTTGTGCAAAGCCCTACGCTTTGCACAAAGCACTCGCAACTTTGAATGCTG
AAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 287583 -- 288082
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAAAAATG
GCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Found at i:287592 original size:28 final size:28
Alignment explanation
Indices: 287482--287582 Score: 193
Period size: 28 Copynumber: 3.6 Consensus size: 28
287472 TTGCAATTGT
287482 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
287510 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
287538 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
287566 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
287583 CATACCAACA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 286982 -- 287481
TGCAAAGCCCTACGCTTTGCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTT
TGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATT
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTG
ACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACA
ATGAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGT
Right flanking sequence: Indices 287583 -- 288082
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAAAAATG
GCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Found at i:287795 original size:43 final size:42
Alignment explanation
Indices: 287731--288113 Score: 216
Period size: 43 Copynumber: 9.2 Consensus size: 42
287721 TTGTATGTCA
* * * *
287731 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
287774 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * *
287812 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
*
287850 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
287893 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * ***** * *
287934 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** *** * * *
287976 ATCAGGACTGATTCTT-CTTGAAAGGTCAATACTGTATTTCAAAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
288020 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
288063 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
288106 TCAGGACT
1 TCAGGACT
288114 CATTCTTCTT
Statistics
Matches: 267, Mismatches: 53, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
33 11 0.04
35 1 0.00
37 5 0.02
38 16 0.06
39 6 0.02
41 36 0.13
42 13 0.05
43 166 0.62
44 13 0.05
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 287231 -- 287730
GGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGA
CAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
TTCCATCAACAATGAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTA
GTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCC
ATTTTCCATCACAAAAATGGAAAAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 288114 -- 288613
CATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCA
TACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
Found at i:287893 original size:19 final size:19
Alignment explanation
Indices: 287869--288113 Score: 91
Period size: 19 Copynumber: 11.7 Consensus size: 19
287859 ACCTTACCAA
287869 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
287888 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
287912 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
287931 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
287953 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
287972 AAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* * *
287996 AAAGGTCAATACTGTATTTC
1 AAAGGTCAAGACTGT-CTTG
* ** *
288016 AAA-GTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACT-GTCTT----G
288039 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
288058 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
288082 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
288101 AAAGGTCAGGACT
1 AAAGGTCAAGACT
288114 CATTCTTCTT
Statistics
Matches: 171, Mismatches: 26, Indels: 58
0.67 0.10 0.23
Matches are distributed among these distances:
17 3 0.02
19 80 0.47
20 7 0.04
21 2 0.01
22 10 0.06
23 6 0.04
24 63 0.37
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 287369 -- 287868
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCA
ACAATGAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAAC
AAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCA
TCACAAAAATGGAAAAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCT
GGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 288114 -- 288613
CATTCTTCTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCA
TACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
Found at i:287915 original size:24 final size:23
Alignment explanation
Indices: 287883--288156 Score: 118
Period size: 24 Copynumber: 12.8 Consensus size: 23
287873 GTCAAGACTG
287883 TCTTGAAAGGTCAGGACTGATTTT
1 TCTTGAAAGGTCAGGACTGA-TTT
*
287907 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
287926 TCTTGAAA--TCAGTACTGACCTTT
1 TCTTGAAAGGTCAGGACTGA--TTT
* *
287949 T-TTGAAAGATCAAGACT-A---
1 TCTTGAAAGGTCAGGACTGATTT
*
287967 TCTTGAAAGATCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
**
287991 TCTTGAAAGGTCAATACTG-TATT
1 TCTTGAAAGGTCAGGACTGAT-TT
* *
288014 TC---AAA-GTCAGGACTAACCTT
1 TCTTGAAAGGTCAGGACTGA-TTT
* *** *
288034 ACCAAAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
288053 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
*
288077 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
288096 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
* *
288120 TCTTGAAAGGTGAGGAC---TCT
1 TCTTGAAAGGTCAGGACTGATTT
288140 T-TTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
288157 CTGAAAGGTC
Statistics
Matches: 191, Mismatches: 27, Indels: 68
0.67 0.09 0.24
Matches are distributed among these distances:
17 7 0.04
18 1 0.01
19 75 0.39
20 9 0.05
21 1 0.01
22 6 0.03
23 9 0.05
24 83 0.43
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATTT
Left flanking sequence: Indices 287383 -- 287882
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCA
CCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATG
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTG
CTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAA
AAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 288157 -- 288656
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAA
AGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAA
CCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAA
Found at i:288119 original size:43 final size:43
Alignment explanation
Indices: 287869--288157 Score: 311
Period size: 43 Copynumber: 6.8 Consensus size: 43
287859 ACCTTACCAA
* *
287869 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* *
287912 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT--CATTCTTCTTG
* * * *
287953 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * ** ***
287996 AAAGGTCAATACTGTATTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTCATTCTT-CTTG
*
288039 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
288082 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * *
288125 AAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
288158 TGAAAGGTCA
Statistics
Matches: 204, Mismatches: 32, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
41 32 0.16
42 13 0.06
43 150 0.74
44 9 0.04
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 287369 -- 287868
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCA
ACAATGAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAAC
AAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCA
TCACAAAAATGGAAAAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCT
GGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 288158 -- 288657
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAA
GGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAAC
CAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAG
Found at i:288146 original size:19 final size:20
Alignment explanation
Indices: 288039--288158 Score: 102
Period size: 19 Copynumber: 5.8 Consensus size: 20
288029 ACCTTACCAA
* *
288039 AAAGGTCAAGACT-GTCTTG
1 AAAGGTCAGGACTCTTCTTG
288058 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAGGAC----TCTTCTTG
* *
288082 AAAGGTCAAGACT-GTCTTG
1 AAAGGTCAGGACTCTTCTTG
288101 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAGGA--C--TCTTCTTG
*
288125 AAAGGTGAGGACTCTT-TTG
1 AAAGGTCAGGACTCTTCTTG
288144 AAAGGTCAGGACTCT
1 AAAGGTCAGGACTCT
288159 GAAAGGTCAG
Statistics
Matches: 83, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
19 43 0.52
20 5 0.06
21 1 0.01
22 1 0.01
23 2 0.02
24 31 0.37
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (20 bp):
AAAGGTCAGGACTCTTCTTG
Left flanking sequence: Indices 287539 -- 288038
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCAC
TATACCAAAAAGATGCCATTTTCCATCACAAAAATGGAAAAATGGCAATTGTATGCCTTCAAGAA
TTGCACAATTATGGAAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
TGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 288159 -- 288658
GAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACC
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGA
Found at i:288163 original size:16 final size:17
Alignment explanation
Indices: 288120--288172 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 17
288110 GACTCATTCT
*
288120 TCTTGAAAGGTGAGGAC
1 TCTTGAAAGGTCAGGAC
288137 TCTTTTGAAAGGTCAGGAC
1 TC--TTGAAAGGTCAGGAC
288156 TC-TGAAAGGTCAGGAC
1 TCTTGAAAGGTCAGGAC
288172 T
1 T
288173 AATGAGAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 15 0.45
17 2 0.06
19 16 0.48
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (17 bp):
TCTTGAAAGGTCAGGAC
Left flanking sequence: Indices 287620 -- 288119
CATTTTCCATCACAAAAATGGAAAAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAA
GGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTG
TATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
Right flanking sequence: Indices 288173 -- 288672
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
CATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTAC
TCACCATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGAT
Found at i:288320 original size:28 final size:28
Alignment explanation
Indices: 288245--288371 Score: 147
Period size: 28 Copynumber: 4.6 Consensus size: 28
288235 TTGCAATTGT
288245 ATGCCATTAGTACTCACTTGAC-AACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* *
288272 ATTG-TA-T-GTCTCTCACTTGACAAACAA
1 A-TGCCATTAGT-ACTCACTTGACAAACAA
288299 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
* *
288327 ATGTCATTAGTACTCAC-TGTACAAACCA
1 ATGCCATTAGTACTCACTTG-ACAAACAA
*
288355 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
288372 CATACCAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
25 2 0.02
26 13 0.15
27 11 0.13
28 59 0.68
29 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 287745 -- 288244
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAA
TACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTGAGG
ACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 288372 -- 288871
CATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATA
CTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
Found at i:288388 original size:28 final size:28
Alignment explanation
Indices: 288303--288388 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
288293 AAACAAATGC
* *
288303 CATTAGTACTCA-CTTGAC-AAACAAATGT
1 CATTAGTACTCACCAT-ACAAAAC-AAGGT
** * *
288331 CATTAGTACTCACTGTACAAACCAATGT
1 CATTAGTACTCACCATACAAAACAAGGT
288359 CATTAGTACTCACCATACCAAAAC-AGGT
1 CATTAGTACTCACCATA-CAAAACAAGGT
288387 CA
1 CA
288389 GGACTTTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 39 0.81
29 9 0.19
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (28 bp):
CATTAGTACTCACCATACAAAACAAGGT
Left flanking sequence: Indices 287803 -- 288302
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAA
AGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
Right flanking sequence: Indices 288389 -- 288888
GGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
Found at i:288491 original size:43 final size:42
Alignment explanation
Indices: 288426--288803 Score: 162
Period size: 43 Copynumber: 9.2 Consensus size: 42
288416 TTGTATGTCA
* * * *
288426 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
288469 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * * * *
288507 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
*
288545 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
288588 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * ***** * *
288629 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * * * *
288671 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
288710 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
288753 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
288796 TCAGGACT
1 TCAGGACT
288804 CATTCTTCTT
Statistics
Matches: 252, Mismatches: 58, Indels: 50
0.70 0.16 0.14
Matches are distributed among these distances:
33 9 0.04
35 1 0.00
37 9 0.04
38 33 0.13
39 12 0.05
41 36 0.14
42 8 0.03
43 137 0.54
44 7 0.03
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 287926 -- 288425
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCA
TTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAA
ACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 288804 -- 289303
CATTCTTCTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACT
CACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACC
AACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAA
ATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAAT
Found at i:288588 original size:19 final size:19
Alignment explanation
Indices: 288564--288628 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
288554 ACCTTACCAA
288564 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
288583 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
288607 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
288626 AAA
1 AAA
288629 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 288064 -- 288563
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACT
CACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCA
GGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 288629 -- 289128
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACT
Found at i:288753 original size:19 final size:19
Alignment explanation
Indices: 288729--288862 Score: 103
Period size: 19 Copynumber: 6.7 Consensus size: 19
288719 ACCTTACCAA
*
288729 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAGGACTGTCTTG
288748 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAGGACTG-----TCTTG
*
288772 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAGGACTGTCTTG
*
288791 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAGGA--C--T-GTCTTG
* *
288815 AAAGGTCAGGACTTTCTGG
1 AAAGGTCAGGACTGTCTTG
*
288834 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAGGACTGTCTTG
288850 AAAGGTCAGGACT
1 AAAGGTCAGGACT
288863 AATGAGAATG
Statistics
Matches: 96, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
16 12 0.12
17 2 0.02
19 44 0.46
20 1 0.01
21 1 0.01
22 1 0.01
23 1 0.01
24 34 0.35
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAGGACTGTCTTG
Left flanking sequence: Indices 288229 -- 288728
GACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGT
CATTAGTACTCACCATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 288863 -- 289362
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCAC
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCT
CTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTAC
Found at i:288772 original size:24 final size:24
Alignment explanation
Indices: 288743--288827 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
288733 GTCAAGACTG
288743 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
288767 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
288786 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
288810 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
288828 TTCTGGAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 288243 -- 288742
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACC
ATACCAAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 288828 -- 289327
TTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAA
AAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATG
TTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCTCTATTCATGA
Found at i:288809 original size:43 final size:43
Alignment explanation
Indices: 288564--288847 Score: 257
Period size: 43 Copynumber: 6.8 Consensus size: 43
288554 ACCTTACCAA
* *
288564 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* *
288607 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT--CATTCTTCTTG
* * * *
288648 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * * ** ***
288689 ---GGTCAATACTGTATTTCACA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTCATTCTT-CTTG
*
288729 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
288772 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* * * *
288815 AAAGGTCAGGACTTTCTGGAAAGGTCAAGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
288848 TGAAAGGTCA
Statistics
Matches: 194, Mismatches: 32, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
37 4 0.02
38 18 0.09
39 4 0.02
41 32 0.16
42 9 0.05
43 123 0.63
44 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 288064 -- 288563
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACT
CACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCA
GGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 288848 -- 289347
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTA
CCAAAAAGGTTAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTG
CAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAAT
GCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACA
ACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAA
TGCTTCGCTTTGGCTCTATTCATGAGCCACTTTGATGAAATGCAA
Found at i:288854 original size:16 final size:16
Alignment explanation
Indices: 288813--288862 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 16
288803 TCATTCTTCT
288813 TGAAAGGTCAGGACTTTC
1 TGAAAGGTCAGGAC--TC
*
288831 TGGAAAGGTCAAGACTC
1 T-GAAAGGTCAGGACTC
288848 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
288863 AATGAGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 13 0.45
17 3 0.10
18 1 0.03
19 12 0.41
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 288313 -- 288812
CACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACC
AAAACAGGTCAGGACTTTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTAT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 288863 -- 289362
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCAC
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCT
CTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTAC
Found at i:289197 original size:28 final size:28
Alignment explanation
Indices: 289115--289187 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
289105 TTGCAATTGT
289115 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
289143 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
289171 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
289188 CATACCAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 288615 -- 289114
AGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACT
GATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTTAATACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 289188 -- 289687
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCCAACCAAAAGCTTTGAATGCTTCGCTTTGGCT
CTATTCATGAGCCACTTTGATGAAATGCAAAGCAAAGTCATGTACGCTGACCTTGACTTTGAAAA
TGGCTCGTGACGTGACCTGAATAAGCTTCAGCAATTTCAAGTTGCGAGTGCTTTTATCGCACGGA
GAGCGAGCGAGCGAAGACAAGCCGCGAGCCATGAGCCGCCTATCGGCAAGGCTCCCTTACTTCAC
TGAACTGATTCACGCAGGTCCAAACCTGCGCTGGCTCATTTTTCCTTTACGAGATCTCGGCTCTT
CGGAATGGTTTGAGAGAGCCCCGCCCCCTCTTGTCAGGCGCCGGGCCCGAGGGGGGTTTTCCTGA
AAGATCGTTTCGTTCCGGCCGGCAGGAGGGCCCCTGATCTATCCA
Found at i:293909 original size:76 final size:78
Alignment explanation
Indices: 293777--293933 Score: 210
Period size: 76 Copynumber: 2.0 Consensus size: 78
293767 TCATCTTTCA
293777 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTG
*
293842 AAATACAGTATTGACC
63 AAAGACAGTATTGACC
* * * * *
293858 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAA
*
293921 GACAGTCTTGACC
66 GACAGTATTGACC
293934 TTTTTGATAA
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
76 50 0.72
77 2 0.03
81 17 0.25
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAA
GACAGTATTGACC
Left flanking sequence: Indices 293277 -- 293776
GAAAAAGCAAGACAGAAACGATCTCTTTGACTGACGTCAAGCAATACGTGGAGTCACTCCCGATA
TTGCAGTAAAAGCAAGCAAGACGTGTAGGCGGATCGATCAGGAAGTCAATCTTTCGAATACCGTT
CTTTCGTATCTAGCCCCTCTGTCAAGCGACAGCCGGCAGAGAGAAAGTGCTTTATCGGGTTGCCG
AAGTTTTCGGGCAACGAGCAAAGCCCTAATGCAATTCAAAGCGTAGCCCAACGTCATGTCACGTC
ACGTTATTAGCAAAGCCCACAAAGCACTCTGAACAAGAGGGCTTTGCTCTGACCTGAATCACTTC
ATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAAT
TGTCATTGATCTTCAATGAAACACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTAT
AGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCA
Right flanking sequence: Indices 293934 -- 294433
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTC
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
Found at i:294027 original size:24 final size:24
Alignment explanation
Indices: 293999--294083 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
293989 TTCCATAATG
*
293999 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
294023 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
* *
294042 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
294066 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
294084 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 293499 -- 293998
AATGCAATTCAAAGCGTAGCCCAACGTCATGTCACGTCACGTTATTAGCAAAGCCCACAAAGCAC
TCTGAACAAGAGGGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGA
GTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAA
TGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATACAATTGCA
ATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTTTGGTA
AGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 294084 -- 294583
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTT
Found at i:294050 original size:19 final size:19
Alignment explanation
Indices: 294023--294097 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
294013 AAGAAGAATG
294023 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
294042 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
294066 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
294085 AGTCTTGACCTTT
1 AGTCCTGACCTTT
294098 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 293523 -- 294022
CGTCATGTCACGTCACGTTATTAGCAAAGCCCACAAAGCACTCTGAACAAGAGGGCTTTGCTCTG
ACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGG
ATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAATGGCATTGTTTTGGTATGGTGAGT
ACTCATGTTGGTATAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 294098 -- 294597
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTA
Found at i:294053 original size:43 final size:43
Alignment explanation
Indices: 293999--294137 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 43
293989 TTCCATAATG
* *
293999 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*
294042 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * **
294085 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAAGAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGAC
294128 AGTCTTGACC
1 AGTCTTGACC
294138 AGAAGAATCA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 83 0.97
44 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 293499 -- 293998
AATGCAATTCAAAGCGTAGCCCAACGTCATGTCACGTCACGTTATTAGCAAAGCCCACAAAGCAC
TCTGAACAAGAGGGCTTTGCTCTGACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGA
GTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAA
TGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATACAATTGCA
ATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTTTGGTA
AGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTCCTGACTTTTCCATAATG
Right flanking sequence: Indices 294138 -- 294637
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTC
TGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTA
Found at i:294189 original size:76 final size:78
Alignment explanation
Indices: 294023--294213 Score: 242
Period size: 76 Copynumber: 2.4 Consensus size: 78
294013 AAGAAGAATG
**
294023 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACAGT
294088 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* *
294109 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
294172 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
294185 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
294214 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
76 53 0.54
77 2 0.02
81 19 0.19
86 25 0.25
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 293523 -- 294022
CGTCATGTCACGTCACGTTATTAGCAAAGCCCACAAAGCACTCTGAACAAGAGGGCTTTGCTCTG
ACCTGAATCACTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGG
ATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAATGGCATTGTTTTGGTATGGTGAGT
ACTCATGTTGGTATAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 294214 -- 294713
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
Found at i:294209 original size:43 final size:41
Alignment explanation
Indices: 294161--294257 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
294151 CTGATCAGAT
* * * *
294161 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
294204 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
294245 AGTCTTGACCTTT
1 AGTCTTGACCTTT
294258 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 293661 -- 294160
TGGAATTGTCATTGATCTTCAATGAAACACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGT
TGGTATAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTAACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 294258 -- 294757
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTT
TTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TGAATTGCAATGAGTCCTGACCTTTCTATAAGGAGTCCTGACCTT
Found at i:294382 original size:43 final size:43
Alignment explanation
Indices: 294335--294490 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
294325 CTGACCTTTC
294335 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
294378 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
294411 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
294454 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
294491 TGACATACAA
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.14
35 1 0.01
37 3 0.03
38 21 0.24
39 3 0.03
41 1 0.01
43 46 0.53
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 293835 -- 294334
GACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 294491 -- 294990
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACT
AATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCTATAAGGAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
Found at i:294644 original size:28 final size:28
Alignment explanation
Indices: 294612--294713 Score: 179
Period size: 28 Copynumber: 3.6 Consensus size: 28
294602 TGTTGGTATG
*
294612 GTGAGCACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
294640 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
294668 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
294696 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
294714 GAATTGCAAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
28 71 0.99
29 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 294112 -- 294611
CCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 294714 -- 295213
GAATTGCAATGAGTCCTGACCTTTCTATAAGGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCA
Found at i:294777 original size:24 final size:24
Alignment explanation
Indices: 294721--294830 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 24
294711 ATTGAATTGC
* *
294721 AATGAGTCCTGACCTTTCTATAAG
1 AATGAGTCCTGACCTTTCAAGAAG
294745 ---GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
294766 AATGAGTCCTGACCTTTC---AAG
1 AATGAGTCCTGACCTTTCAAGAAG
* * *
294787 -A-CAGTCTTGACCTTTCCAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
*
294809 AATCAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
294831 CAGTCTTGAC
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
19 13 0.18
20 1 0.01
21 22 0.31
22 3 0.04
23 1 0.01
24 32 0.44
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 294221 -- 294720
TAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTAT
GGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 294831 -- 295330
CAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGT
CTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAC
Found at i:294797 original size:19 final size:19
Alignment explanation
Indices: 294770--294844 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
294760 AAGAAGAATG
294770 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
294789 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
294813 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
294832 AGTCTTGACCTTT
1 AGTCCTGACCTTT
294845 TTGGTCAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 294270 -- 294769
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTG
ACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGA
GTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
AGTCCTGACCTTTCTATAAGGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 294845 -- 295344
TTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTT
Found at i:294936 original size:76 final size:78
Alignment explanation
Indices: 294770--294960 Score: 224
Period size: 76 Copynumber: 2.4 Consensus size: 78
294760 AAGAAGAATG
**
294770 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACAGT
*
294835 CTTGACCTTTTTGGTCAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
294856 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
294919 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
294932 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
294961 TTTTTGATAA
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
76 51 0.53
77 2 0.02
81 19 0.20
86 24 0.25
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 294270 -- 294769
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTG
ACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGA
GTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
AGTCCTGACCTTTCTATAAGGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 294961 -- 295460
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGT
CTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTA
TGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTC
Found at i:295007 original size:19 final size:19
Alignment explanation
Indices: 294983--295047 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
294973 TCAGTACTGA
294983 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
295002 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
295026 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
295045 TTT
1 TTT
295048 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 294483 -- 294982
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTCAATCATTC
TCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGG
TGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCTATA
AGGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 295048 -- 295547
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGG
TTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATG
Found at i:295061 original size:43 final size:42
Alignment explanation
Indices: 294770--295185 Score: 255
Period size: 43 Copynumber: 10.2 Consensus size: 42
294760 AAGAAGAATG
* *** *
294770 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* *
294813 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
294856 AGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
294894 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
294932 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *** * **
294975 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
295016 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * * *
295059 AGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
295097 AGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
295135 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
295178 AGTACTGA
1 AGTCCTGA
295186 TGACATACAA
Statistics
Matches: 284, Mismatches: 61, Indels: 56
0.71 0.15 0.14
Matches are distributed among these distances:
33 21 0.07
37 5 0.02
38 42 0.15
39 6 0.02
41 31 0.11
42 5 0.02
43 172 0.61
44 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 294270 -- 294769
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTG
ACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGA
GTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
AGTCCTGACCTTTCTATAAGGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 295186 -- 295685
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGAC
ATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTC
CTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGAC
Found at i:295129 original size:203 final size:203
Alignment explanation
Indices: 294780--295186 Score: 753
Period size: 203 Copynumber: 2.0 Consensus size: 203
294770 AGTCCTGACC
* *
294780 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
* *
294845 TTGGTCAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
294910 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
294975 AGTACTGA
196 AGTACTGA
294983 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
295048 TTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
66 TTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATA
295112 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
130 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
*
295177 GAGTACTGA
195 CAGTACTGA
295186 T
1 T
295187 GACATACAAA
Statistics
Matches: 198, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
202 2 0.01
203 196 0.99
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 294280 -- 294779
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTTCTGACTTTTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGT
TGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACC
TTTCTATAAGGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 295187 -- 295686
GACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAG
TGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACA
TACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
Found at i:295339 original size:19 final size:16
Alignment explanation
Indices: 295296--295341 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
295286 CATTCTCATT
295296 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
295312 AGTCTTGACCTTTCAAG
1 AGTCCTGACCTTTC-AG
295329 ACAGTCCTGACCT
1 --AGTCCTGACCT
295342 GTTTTGGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 13 0.52
17 2 0.08
19 10 0.40
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 294796 -- 295295
ACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTCAGTCC
TGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 295342 -- 295841
GTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCC
TGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTG
Found at i:295532 original size:28 final size:28
Alignment explanation
Indices: 295353--295535 Score: 243
Period size: 28 Copynumber: 6.6 Consensus size: 28
295343 TTTTGGTATG
* *
295353 GTGAGTACTAATGACATTGGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
*
295381 GTGAGTACTAATGACATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
295409 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
* *
295437 GTGAG-A-GACAT-ACAATTTG-TTGTCAA
1 GTGAGTACTA-ATGGC-ATTTGTTTGTCAA
295463 GTGAGTACTAATGGCATTT-TGTTGTCAA
1 GTGAGTACTAATGGCATTTGT-TTGTCAA
295491 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
295519 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
295536 ACAATTGTCA
Statistics
Matches: 140, Mismatches: 6, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
26 14 0.10
27 15 0.11
28 109 0.78
29 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 294853 -- 295352
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 295536 -- 296035
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTTCAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Found at i:295653 original size:43 final size:43
Alignment explanation
Indices: 295605--295688 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
295595 CTGATCTTTC
* * * *
295605 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
295648 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
295689 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 295105 -- 295604
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAAT
GACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 295689 -- 296188
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTCA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
Found at i:295748 original size:19 final size:16
Alignment explanation
Indices: 295707--295737 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
295697 CATTCTCATT
295707 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
295723 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
295738 AAAGAGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 295207 -- 295706
CCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCT
GACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGT
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 295738 -- 296237
AAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCT
TTCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTT
CAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGT
Found at i:295767 original size:69 final size:69
Alignment explanation
Indices: 295688--295816 Score: 258
Period size: 69 Copynumber: 1.9 Consensus size: 69
295678 GTTCTGACTT
295688 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATG
1 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATG
295753 GTCA
66 GTCA
295757 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCT
1 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCT
295817 CACCTTTCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (69 bp):
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGTATG
GTCA
Left flanking sequence: Indices 295188 -- 295687
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTT
GACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGT
GAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACAT
ACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
Right flanking sequence: Indices 295817 -- 296316
CACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCT
TTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAATCCTGAAAAG
Found at i:295797 original size:16 final size:16
Alignment explanation
Indices: 295776--295825 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 16
295766 CATTCTCATT
295776 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
295792 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTC---AG
*
295811 AGTCCTCACCTTTCA
1 AGTCCTGACCTTTCA
295826 AGAAGAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 15 0.50
19 15 0.50
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 295276 -- 295775
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACC
TGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGT
CAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 295826 -- 296325
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGA
GTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTGGTCAGACAAATCCTGAAAAGTGCTCACCC
Found at i:295814 original size:19 final size:19
Alignment explanation
Indices: 295776--295909 Score: 94
Period size: 19 Copynumber: 6.7 Consensus size: 19
295766 CATTCTCATT
295776 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
295792 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
*
295811 AGTCCTCACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
295835 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
295854 AGTCTTGACCTTTCAAGAAG
1 AGTCCTGACCTTTCAA-AAG
* *
295874 AATCAGTCCTGACCTTTCAAGAC
1 ----AGTCCTGACCTTTCAAAAG
*
295897 AGTCTTGACCTTT
1 AGTCCTGACCTTT
295910 TTGGTCAGGT
Statistics
Matches: 94, Mismatches: 11, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
16 14 0.15
19 42 0.45
20 2 0.02
21 2 0.02
22 2 0.02
23 3 0.03
24 29 0.31
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 295276 -- 295775
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACC
TGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGT
CAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTAC
TAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 295910 -- 296409
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTC
AGACAAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAA
GACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTA
Found at i:295845 original size:24 final size:23
Alignment explanation
Indices: 295790--295895 Score: 102
Period size: 24 Copynumber: 4.9 Consensus size: 23
295780 CTGACCTTTC
295790 AGAGTCCTGACCTTTC---AA-A
1 AGAGTCCTGACCTTTCAAGAAGA
*
295809 AGAGTCCTCACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAAGA
295832 ATGAGTCCTGACCTTTC---AAG-
1 A-GAGTCCTGACCTTTCAAGAAGA
* *
295852 ACAGTCTTGACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAAGA
*
295875 ATCAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
295896 CAGTCTTGAC
Statistics
Matches: 72, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
19 28 0.39
20 1 0.01
21 3 0.04
22 5 0.07
23 3 0.04
24 32 0.44
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (23 bp):
AGAGTCCTGACCTTTCAAGAAGA
Left flanking sequence: Indices 295290 -- 295789
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGT
GAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAG
TCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCT
TGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
TCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGT
CCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 295896 -- 296395
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCT
GACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCCTGACCTGGTCAGACAAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATT
GTATGCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGA
Found at i:295865 original size:43 final size:43
Alignment explanation
Indices: 295791--295909 Score: 193
Period size: 43 Copynumber: 2.8 Consensus size: 43
295781 TGACCTTTCA
* * * *
295791 GAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAAT
1 GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
295834 GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
1 GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
*
295877 CAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 GAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
295910 TTGGTCAGGT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
Left flanking sequence: Indices 295291 -- 295790
TCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTGTTTTGGTATGGTG
AGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGT
CCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTT
GATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTT
CTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTC
CTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
Right flanking sequence: Indices 295910 -- 296409
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTC
AGACAAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAA
GACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTA
Found at i:295925 original size:43 final size:43
Alignment explanation
Indices: 295835--296173 Score: 198
Period size: 43 Copynumber: 8.2 Consensus size: 43
295825 AAGAAGAATG
*** *
295835 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* *
295878 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
295921 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * * * ** *
295964 AGTACTGATGACATACAA-ATGAGTCTTGACC--TTT-CAAAAG--
1 AGTCCTGA--CCTTTCAAGA-CAGTCTTGACCTTTTTGGTAAGGTC
296004 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
296047 AGTCCTGA-CTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
296085 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
296123 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
296166 AGTACTGA
1 AGTCCTGA
296174 TGACATACAA
Statistics
Matches: 227, Mismatches: 44, Indels: 50
0.71 0.14 0.16
Matches are distributed among these distances:
33 12 0.05
37 3 0.01
38 36 0.16
39 4 0.02
40 10 0.04
41 3 0.01
42 9 0.04
43 133 0.59
44 3 0.01
45 12 0.05
46 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 295335 -- 295834
CTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGACATTT
GTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGT
GAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTT
CTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAG
TCCTGACCTTTCAAAAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGAGTCCTCACCTTTCAAGAAGAATG
Right flanking sequence: Indices 296174 -- 296673
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTG
AGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGAC
AAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACA
GGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAG
GTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
Found at i:296006 original size:19 final size:19
Alignment explanation
Indices: 295979--296035 Score: 78
Period size: 19 Copynumber: 3.0 Consensus size: 19
295969 TGATGACATA
*
295979 CAAATGAGTCTTGACCTTT
1 CAAAAGAGTCTTGACCTTT
*
295998 CAAAAGAGTCCTGACCTTT
1 CAAAAGAGTCTTGACCTTT
* *
296017 CAAGACAGTCTTGACCTTT
1 CAAAAGAGTCTTGACCTTT
296036 TTGGTAAGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (19 bp):
CAAAAGAGTCTTGACCTTT
Left flanking sequence: Indices 295479 -- 295978
TTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGT
CATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGA
CAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAA
AAGAGTCCTGTATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTT
TCAAAAGAGTCCTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 296036 -- 296535
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTG
GTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCT
GGTCAGACAAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGG
AAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCT
CTGGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
Found at i:296540 original size:43 final size:42
Alignment explanation
Indices: 296475--296895 Score: 264
Period size: 43 Copynumber: 10.2 Consensus size: 42
296465 TTGTATGTCA
* * *
296475 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
296518 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
296556 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
296594 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
* ** * *** *
296637 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * *
296678 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
296721 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** *** * * *
296759 TCAGGACTGATTCTT-CTTGAAAGGTCAATACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
296802 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
296845 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
296888 TCAGGACT
1 TCAGGACT
296896 CATTCTTCTT
Statistics
Matches: 291, Mismatches: 63, Indels: 48
0.72 0.16 0.12
Matches are distributed among these distances:
33 11 0.04
35 1 0.00
37 5 0.02
38 37 0.13
39 11 0.04
40 1 0.00
41 29 0.10
42 18 0.06
43 174 0.60
44 4 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 295975 -- 296474
CATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAA
GGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTC
AGACAAATCCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAA
GACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGG
AAAGGTCAGGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 296896 -- 297395
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAG
GACCTTACTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
Found at i:296623 original size:76 final size:80
Alignment explanation
Indices: 296496--296728 Score: 253
Period size: 76 Copynumber: 2.9 Consensus size: 80
296486 CTTATCAAAA
* *
296496 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGTCTTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
296558 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
*
296573 -GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
296637 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * * *
296655 GAAAGGTCAAGACTGTC-TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
1 ---AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TT-GA
296719 AGTCAGGACT
61 AGTCAGGACT
296729 AACCTTACCA
Statistics
Matches: 134, Mismatches: 9, Indels: 19
0.83 0.06 0.12
Matches are distributed among these distances:
75 1 0.01
76 51 0.38
77 2 0.01
79 1 0.01
81 15 0.11
82 1 0.01
84 43 0.32
85 7 0.05
86 13 0.10
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (80 bp):
AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 295996 -- 296495
TTCAAAAGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAATCCTGAAAAGTGCT
CACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATTCT
TGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTTGATTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 296729 -- 297228
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTA
TTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATT
ATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAGGACCTTACTAAAAGGTCAAGACTGTCTT
GGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAGACTGTCTT
Found at i:296637 original size:19 final size:19
Alignment explanation
Indices: 296613--296677 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
296603 ACCTTACCAA
296613 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
296632 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
296656 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
296675 AAA
1 AAA
296678 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 296113 -- 296612
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTT
CTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAAT
CCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAG
AAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCA
GGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 296678 -- 297177
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCACAGTCAGGA
CTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
AAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTTACAAGGACAGGACCTTACTAAAAGGTCAAGAC
Found at i:296845 original size:19 final size:19
Alignment explanation
Indices: 296821--296895 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
296811 ACCTTACCAA
296821 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
296840 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
296864 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
296883 AAAGGTCAGGACT
1 AAAGGTCAAGACT
296896 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 296321 -- 296820
CACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATTCT
TGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTTGATTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
TGAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 296896 -- 297395
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAG
GACCTTACTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
Found at i:296901 original size:43 final size:43
Alignment explanation
Indices: 296613--297504 Score: 335
Period size: 43 Copynumber: 20.7 Consensus size: 43
296603 ACCTTACCAA
*
296613 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * **
296656 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TG
* ** ***
296697 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
* *
296740 AAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * ** ***
296778 AAAGGTCAATACTGTATTTCACA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTG
*
296821 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
296864 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * ** *
296907 AAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTGAGGACTTTCTGG
1 AAAGGTCAAGACT-GTCT-T-GAAAGGTCAGG-A-CTGA-TTC-TTCTTG
*** **
296956 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAGAATGATTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---TGATTCTTCTTG
* * * * * * * * * **
296999 AGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTCA-CCTTATCAA
1 A--AA-G---GTCAAGACT-GTCTTGAAAG--GTCAGGACTGATTCTTCT-TG
* ** ***
297050 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
* *
297093 AAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * *
297129 ---GGTCAAGACTGTCTTTTACAAGGACAGGAC-----CTTAC-TA
1 AAAGGTCAAGACTGTC-TTGA-AAGGTCAGGACTGATTCTT-CTTG
* **
297166 AAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWT-TGATTGAG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT-TCTTCTT--G
*
297211 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTG
* * *
297252 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * ** ***
297295 AAAGGTCAATACTGTATTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTG
297338 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
297381 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * *
297424 AAAGGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTCAGGACTCTT-TTG
1 AAAGGTCAAGACT-GTCT-T-GAAAGGTCAGG-A---C-TGATTCTTCTTG
*
297473 AAAGGTCAAGACTTTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
297505 CATTGCAATT
Statistics
Matches: 640, Mismatches: 126, Indels: 167
0.69 0.14 0.18
Matches are distributed among these distances:
33 11 0.02
35 4 0.01
36 2 0.00
38 41 0.06
39 12 0.02
40 23 0.04
41 50 0.08
42 27 0.04
43 294 0.46
44 32 0.05
45 56 0.09
46 8 0.01
47 12 0.02
48 4 0.01
49 42 0.07
50 8 0.01
51 3 0.00
52 5 0.01
54 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 296113 -- 296612
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTT
CTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAAT
CCTGAAAAGTGCTCACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAG
AAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCA
GGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 297505 -- 298004
CATTGCAATTGTATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCC
ATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATAC
CAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATT
GTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAGATGCCATT
TTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGCCATTCATG
CTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTCTTTGTTCA
GGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTC
Found at i:296920 original size:24 final size:24
Alignment explanation
Indices: 296835--296923 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
296825 GTCAAGACTG
*
296835 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
296859 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
296878 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
296902 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
296924 ATGGAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 1 0.02
23 1 0.02
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 296335 -- 296834
AGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGG
ATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTTGAAAGGTCAATAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 296924 -- 297423
ATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAGGACCTTACTAAAAGGTCAAGACTGTCTT
GGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTT
TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTT
CAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Found at i:297362 original size:19 final size:19
Alignment explanation
Indices: 297338--297412 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
297328 ACCTTACCAA
297338 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
297357 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
297381 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
297400 AAAGGTCAGGACT
1 AAAGGTCAAGACT
297413 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 30 0.62
24 18 0.38
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 296838 -- 297337
TGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAGGACCTTA
CTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
TGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 297413 -- 297912
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTTTCCATATGCCA
TTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACA
AACCAATGTCATTAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGT
CTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AAATGCCATTACCAAGAAGATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACA
AAAAAGGACAATTGTATGCCATTCATGCTGACCCTGACCATTTAT
Found at i:297381 original size:24 final size:24
Alignment explanation
Indices: 297352--297436 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
297342 GTCAAGACTG
297352 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
297376 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
297395 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
297419 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
297437 CATTATGGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 296852 -- 297351
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAGGACCTTACTAAAAGGTCAAGA
CTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATAC
TGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 297437 -- 297936
CATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTTCTTGAAAGGTCAGG
ACTCATTGCAATTGTATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAAT
GCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCA
TACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCA
ATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAGATGCC
ATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGCCATTC
ATGCTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCAT
Found at i:297479 original size:19 final size:20
Alignment explanation
Indices: 297455--297505 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
297445 AAAAGTCAGG
297455 AAGGTCAGGACTCTT-TTGA
1 AAGGTCAGGACTCTTCTTGA
*
297474 AAGGTCAAGACT-TTCTTGA
1 AAGGTCAGGACTCTTCTTGA
297493 AAGGTCAGGACTC
1 AAGGTCAGGACTC
297506 ATTGCAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 2 0.07
19 26 0.93
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (20 bp):
AAGGTCAGGACTCTTCTTGA
Left flanking sequence: Indices 296955 -- 297454
GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAA
GGACAGGACCTTACTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAG
GTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAG
GACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 297506 -- 298005
ATTGCAATTGTATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACC
AAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAG
TACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAGATGCCATTT
TCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGCCATTCATGC
TGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTCTTTGTTCAG
GAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCA
Found at i:297541 original size:20 final size:20
Alignment explanation
Indices: 297516--297598 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 20
297506 ATTGCAATTG
297516 TATGCCATTAGTACTTTCCA
1 TATGCCATTAGTACTTTCCA
297536 TATGCCATTAGTACTCACTGTGCAAACA
1 TATGCCATTAGTACT---T-T-C---CA
*
297564 AATGCCATTAGTACTTTCCA
1 TATGCCATTAGTACTTTCCA
297584 TATGCCATTAGTACT
1 TATGCCATTAGTACT
297599 CACTGTACAA
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
20 31 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.30
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (20 bp):
TATGCCATTAGTACTTTCCA
Left flanking sequence: Indices 297016 -- 297515
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTT
ACAAGGACAGGACCTTACTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAG
AAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGA
TCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTT
TGAAAGGTCAAGACTTTCTTGAAAGGTCAGGACTCATTGCAATTG
Right flanking sequence: Indices 297599 -- 298098
CACTGTACAAACCAATGTCATTAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGA
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTACAAACAAAATGCCATTACCAAGAAGATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACA
TGAATAACAAAAAAGGACAATTGTATGCCATTCATGCTGACCCTGACCATTTATGTAATGAAAAG
GATCAATTGTCATTGTATGCCATTAGTCTTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGG
ACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATT
Found at i:297577 original size:28 final size:27
Alignment explanation
Indices: 297537--297629 Score: 92
Period size: 28 Copynumber: 3.6 Consensus size: 27
297527 TACTTTCCAT
297537 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACTCACTGT-CAAACAA
*
297565 ATGCCATTAGTACT---T-TC---CAT
1 ATGCCATTAGTACTCACTGTCAAACAA
*
297585 ATGCCATTAGTACTCACTGTACAAACCA
1 ATGCCATTAGTACTCACTGT-CAAACAA
*
297613 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
297630 CATACCAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
20 16 0.30
23 2 0.04
24 2 0.04
25 2 0.04
28 31 0.58
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (27 bp):
ATGCCATTAGTACTCACTGTCAAACAA
Left flanking sequence: Indices 297037 -- 297536
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTACAAGGACAGGACCTTACTAA
AAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAA
AGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTTCTTG
AAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 297630 -- 298129
CATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTG
CAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
CATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAGATG
CCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGCCAT
TCATGCTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTCTTT
GTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAA
Found at i:297633 original size:48 final size:48
Alignment explanation
Indices: 297517--297626 Score: 193
Period size: 48 Copynumber: 2.3 Consensus size: 48
297507 TTGCAATTGT
*
297517 ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAA
*
297565 ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCA
1 ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAA
*
297613 ATGTCATTAGTACT
1 ATGCCATTAGTACT
297627 CACCATACCA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.33
Consensus pattern (48 bp):
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 297017 -- 297516
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTTA
CAAGGACAGGACCTTACTAAAAGGTCAAGACTGTCTTGGAAGGTCAGGACTGATWTTGATTGAGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTT
GAAAGGTCAAGACTTTCTTGAAAGGTCAGGACTCATTGCAATTGT
Right flanking sequence: Indices 297627 -- 298126
CACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
TTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAA
TGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAG
ATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGC
CATTCATGCTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTC
TTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAA
Found at i:298076 original size:16 final size:16
Alignment explanation
Indices: 298055--298085 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
298045 AGGACCCTTT
298055 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
298071 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
298086 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 297555 -- 298054
GTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCAT
TAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGAC
AAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTAC
CAAGAAGATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAAT
TGTATGCCATTCATGCTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCC
ATTAGTCTTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 298086 -- 298585
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
Found at i:298152 original size:43 final size:42
Alignment explanation
Indices: 298104--298201 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
298094 TGATTGAGGA
* * * *
298104 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
298147 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
298189 AAAGATCAGAACT
1 AAAG-TCAGAACT
298202 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 297604 -- 298103
TACAAACCAATGTCATTAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCAT
TCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGT
ATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACA
AACAAAATGCCATTACCAAGAAGATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAAT
AACAAAAAAGGACAATTGTATGCCATTCATGCTGACCCTGACCATTTATGTAATGAAAAGGATCA
ATTGTCATTGTATGCCATTAGTCTTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 298202 -- 298701
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
Found at i:298280 original size:28 final size:28
Alignment explanation
Indices: 298257--298376 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
298247 TGACAATTGT
298257 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
298285 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
298313 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
298341 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
298369 ATGCCATT
1 ATGCCATT
298377 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 297757 -- 298256
TGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAG
ATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGC
CATTCATGCTGACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTC
TTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 298377 -- 298876
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Found at i:298459 original size:43 final size:43
Alignment explanation
Indices: 298398--298525 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 43
298388 ATGAGTACTC
* * *
298398 ACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
298441 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * *
298484 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
298526 GATTCTTCTG
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 5 0.06
43 72 0.94
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 297898 -- 298397
ACCCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTCTTTGTTCAGGA
AAAGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 298526 -- 299025
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Found at i:298463 original size:24 final size:24
Alignment explanation
Indices: 298431--298507 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
298421 GTATTTCACA
*
298431 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
298455 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
298474 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
298498 GTCAAGACTG
1 GTCAAGACTG
298508 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 297931 -- 298430
TGTCATTGTATGCCATTAGTCTTTGTTCAGGAAAAGTTATGGAAAGGAAAAGGTCAGGACTCTCT
GGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAA
AGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATT
AGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAA
CAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 298508 -- 299007
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTGT
Found at i:298518 original size:19 final size:19
Alignment explanation
Indices: 298494--298569 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
298484 ACCTTACCAA
298494 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
298513 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
298537 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
298556 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
298570 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 297994 -- 298493
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 298570 -- 299069
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
Found at i:298541 original size:43 final size:44
Alignment explanation
Indices: 298400--298572 Score: 176
Period size: 43 Copynumber: 4.0 Consensus size: 44
298390 GAGTACTCAC
* * * * * *
298400 CTTATCAAAAAGGTCAATACTGTATTTCACA-GTCAGGACTGA-C
1 CTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATT
* * **
298443 CTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AAC
1 CTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATT
298486 CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
***
298530 CTT-CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
298573 ATGGAAGGAC
Statistics
Matches: 116, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
42 6 0.05
43 106 0.91
44 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
Left flanking sequence: Indices 297900 -- 298399
CCTGACCATTTATGTAATGAAAAGGATCAATTGTCATTGTATGCCATTAGTCTTTGTTCAGGAAA
AGTTATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCAC
Right flanking sequence: Indices 298573 -- 299072
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
Found at i:298812 original size:43 final size:42
Alignment explanation
Indices: 298647--298816 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
298637 TTGTATGTCA
* * * *
298647 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
298690 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
298728 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
298766 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
298809 TCAGGACT
1 TCAGGACT
298817 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 298147 -- 298646
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCA
AAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 298817 -- 299316
TTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
Found at i:298981 original size:119 final size:113
Alignment explanation
Indices: 298799--299048 Score: 385
Period size: 119 Copynumber: 2.2 Consensus size: 113
298789 ATCAAGACTG
*
298799 TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTC
1 TCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTC
298864 ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
66 ACCTGACC---AA---AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
*
298918 TCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
1 TCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACT
*
298982 CACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
65 CACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
* *
299031 TCTGGAAAGGTCAAGACT
1 TCTTGAAAGGTCAGGACT
299049 CTGAAAGGTC
Statistics
Matches: 125, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
113 53 0.42
116 2 0.02
119 68 0.54
120 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (113 bp):
TCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 298299 -- 298798
CACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
Right flanking sequence: Indices 299049 -- 299548
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCCATA
CCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCA
GGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATTTAAAGGTTAAGACTGTCTTGAA
Found at i:299017 original size:19 final size:19
Alignment explanation
Indices: 298993--299064 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
298983 ACCTGACCAA
298993 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
299012 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
299036 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
299052 AAAGGTCAGGACT
1 AAAGGTCAAGACT
299065 AATGAGAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 13 0.30
20 2 0.05
21 2 0.05
22 1 0.02
23 1 0.02
24 12 0.27
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 298493 -- 298992
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAA
Right flanking sequence: Indices 299065 -- 299564
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGAC
TCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAA
AAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATTTAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:299186 original size:16 final size:16
Alignment explanation
Indices: 299165--299195 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
299155 AGGACTGTCT
299165 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
299181 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
299196 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 298665 -- 299164
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCCATACCAAAC
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCT
Right flanking sequence: Indices 299196 -- 299695
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATTTAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCA
TTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACC
Found at i:299305 original size:43 final size:43
Alignment explanation
Indices: 299242--299464 Score: 245
Period size: 43 Copynumber: 5.2 Consensus size: 43
299232 TTGTATGTCA
* * *
299242 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
299285 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *** * *
299327 ATCAGGACTGATTCTT-CTTGAAAGGTCAATACTGTATTTCAAAG
1 -TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
299371 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
299414 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
299457 TCAGGACT
1 TCAGGACT
299465 TTTGATGGAA
Statistics
Matches: 148, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
42 13 0.09
43 126 0.85
44 9 0.06
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 298742 -- 299241
TCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTG
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTC
ATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 299465 -- 299964
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATTTAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGC
AATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACCAAAAAGCTCA
TCACTTTTCATAAGCACACTCGCTTCGCTTTGGCTTCCCTATAGTCCGTCATGTCATTTTGTCTT
ATAGTGCCCACAAAGCCCTACGCTTTGCTCATGACGTACAAAGCACTCGCTTTGAAGCAAGAGGG
CTTTGCTCGTGACGTTGGGGCAGGGGCTCTTTAACAGAGAATTTA
Found at i:299379 original size:19 final size:19
Alignment explanation
Indices: 299357--299421 Score: 51
Period size: 19 Copynumber: 3.2 Consensus size: 19
299347 AAAGGTCAAT
299357 ACTGTATTTCAAAGTCAGG
1 ACTGTATTTCAAAGTCAGG
*
299376 ACTG-ACCTTATCAAAAAGGTCAAG
1 ACTGTA--TT-TC--AAA-GTCAGG
*
299400 ACTGTATTTCACAGTCAGG
1 ACTGTATTTCAAAGTCAGG
299419 ACT
1 ACT
299422 AACCTTACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
18 1 0.03
19 12 0.33
20 4 0.11
21 2 0.06
22 2 0.06
23 5 0.14
24 9 0.25
25 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (19 bp):
ACTGTATTTCAAAGTCAGG
Left flanking sequence: Indices 298857 -- 299356
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCCATACCA
AACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAT
Right flanking sequence: Indices 299422 -- 299921
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATTTAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGA
GTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATAC
AACAAATTGTATGCCATTAGTGCTGACCATACCAAAAAGCTCATCACTTTTCATAAGCACACTCG
CTTCGCTTTGGCTTCCCTATAGTCCGTCATGTCATTTTGTCTTATAGTGCCCACAAAGCCCTACG
CTTTGCTCATGACGTACAAAGCACTCGCTTTGAAGCAAGAGGGCT
Found at i:299678 original size:28 final size:28
Alignment explanation
Indices: 299596--299669 Score: 148
Period size: 28 Copynumber: 2.6 Consensus size: 28
299586 TTGCAATTGT
299596 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
299624 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
299652 ATGCCATTAGTACTCACT
1 ATGCCATTAGTACTCACT
299670 ATACCAACAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 299096 -- 299595
CTCATTTGTATGTCCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACT
GTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAA
TACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATTTAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 299670 -- 300169
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACCAAAAAGCTCATCACTTTTCA
TAAGCACACTCGCTTCGCTTTGGCTTCCCTATAGTCCGTCATGTCATTTTGTCTTATAGTGCCCA
CAAAGCCCTACGCTTTGCTCATGACGTACAAAGCACTCGCTTTGAAGCAAGAGGGCTTTGCTCGT
GACGTTGGGGCAGGGGCTCTTTAACAGAGAATTTATTGCTATTGTTAGCCAACATCTTCTTCATT
CCTGACCACATCGATAACTAGAGTGAAAAAAGGGGAATGTCAACTTGATCTCTAGATCTGGGAAG
AAACGATCCATAGACCTGCTCAAGAACCGAACCATAGAGTAGTTAGCACAGGCGCCACGGAAAGG
TATGTTTTGATATCTCGCATGGTCCTTCTTGATTTCACACATCAC
Found at i:301791 original size:16 final size:16
Alignment explanation
Indices: 301770--301800 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
301760 AGGACCCTTT
301770 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
301786 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
301801 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 301270 -- 301769
ATTGAAAGGTCTTTCTATGTTGTAGGGCGTCGATGCGCAGATCTCTTCGTACTGCCGTCCGTACC
CCCGCACTCTTTCTTTCTTCGGACCAGAAGAGGATTCGAAGAAAGCAATTCATGCCAGCCATTCC
GCTCCAGCTCCCCCGGCACATAAGAAAGAGTCAAGGAATAGGACCAAAACCGGGGCCCTTGTCTA
CTTTCGAGCGAGGCAATCGAGGCGGCCCATCTCTCCACCTCCGAACTCCAAACCTTCCCATGGTG
GGTCGCCGCACCCACTGCCTGCAGACAGACCCACTTTTTAAGTCGAGTCTCTGCGGATGGAGCTT
CACTGCTGACCCTCTCCCCCAACGTAATTTTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTG
AATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 301801 -- 302300
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
Found at i:301867 original size:43 final size:42
Alignment explanation
Indices: 301819--301916 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 42
301809 TGATTGAGGA
* * *
301819 AAAGTCAGAACTCACCT-TCTCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGAC-CAAAAAGATCAAGACTGTC-TTC
* *
301862 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
301904 AAAGATCAGAACT
1 AAAG-TCAGAACT
301917 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 6 0.13
43 40 0.85
44 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 301319 -- 301818
TACTGCCGTCCGTACCCCCGCACTCTTTCTTTCTTCGGACCAGAAGAGGATTCGAAGAAAGCAAT
TCATGCCAGCCATTCCGCTCCAGCTCCCCCGGCACATAAGAAAGAGTCAAGGAATAGGACCAAAA
CCGGGGCCCTTGTCTACTTTCGAGCGAGGCAATCGAGGCGGCCCATCTCTCCACCTCCGAACTCC
AAACCTTCCCATGGTGGGTCGCCGCACCCACTGCCTGCAGACAGACCCACTTTTTAAGTCGAGTC
TCTGCGGATGGAGCTTCACTGCTGACCCTCTCCCCCAACGTAATTTTGACGAGCAAAGCCCACAA
AGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATG
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 301917 -- 302416
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:301995 original size:28 final size:28
Alignment explanation
Indices: 301972--302091 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
301962 TGACAATTGT
301972 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
302000 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
302028 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
302056 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
302084 ATGCCATT
1 ATGCCATT
302092 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 301472 -- 301971
GCGAGGCAATCGAGGCGGCCCATCTCTCCACCTCCGAACTCCAAACCTTCCCATGGTGGGTCGCC
GCACCCACTGCCTGCAGACAGACCCACTTTTTAAGTCGAGTCTCTGCGGATGGAGCTTCACTGCT
GACCCTCTCCCCCAACGTAATTTTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCTG
AAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 302092 -- 302591
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
Found at i:302154 original size:19 final size:19
Alignment explanation
Indices: 302127--302197 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
302117 TATCAAAAAG
302127 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
302146 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
*
302169 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCAAA
*
302189 GTCAGGACT
1 GTCAAGACT
302198 AACCTGACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 301627 -- 302126
ACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGATCAAGGTTTGACGGA
TTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 302198 -- 302697
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCA
ATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
Found at i:302174 original size:43 final size:43
Alignment explanation
Indices: 302113--302242 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
302103 ATGAGTACTC
302113 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* *
302156 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * *
302199 ACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
302242 A
1 A
302243 TTCTTCTGGT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 4 0.05
43 75 0.95
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
Left flanking sequence: Indices 301613 -- 302112
CCAACGTAATTTTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGAT
CAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 302243 -- 302742
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAA
Found at i:302178 original size:24 final size:24
Alignment explanation
Indices: 302113--302179 Score: 81
Period size: 19 Copynumber: 3.0 Consensus size: 24
302103 ATGAGTACTC
302113 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* *
302137 -TCTT-TC--AAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
302156 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
302180 TCTTTCACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.26
20 6 0.18
21 2 0.06
22 2 0.06
23 6 0.18
24 9 0.26
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 301613 -- 302112
CCAACGTAATTTTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGAT
CAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTCTCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 302180 -- 302679
TCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGAC
Found at i:302233 original size:19 final size:19
Alignment explanation
Indices: 302209--302279 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
302199 ACCTGACCAA
302209 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
302228 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
302248 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
302266 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
302280 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 301709 -- 302208
ATGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTCT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
Right flanking sequence: Indices 302280 -- 302779
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
Found at i:302420 original size:43 final size:42
Alignment explanation
Indices: 302357--302526 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
302347 TTGTATGTCA
* * * *
302357 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
302400 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
302438 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
302476 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
302519 TCAGGACT
1 TCAGGACT
302527 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 301857 -- 302356
CTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTC
TTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 302527 -- 303026
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCA
TTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTT
GATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCAT
CAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAA
Found at i:302611 original size:95 final size:99
Alignment explanation
Indices: 302495--302688 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
302485 ACCTTACCAA
* *
302495 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
302556 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
302590 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
302655 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
302689 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 301995 -- 302494
AACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 302689 -- 303188
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTA
CTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTG
CAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAG
TGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGA
TAATGGCATACAATGACAATTGATCCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAA
AGTTGTCCCTGAAGCTTCGCTTTGCGAGTGCTTTTTTCATTCGCATTCGCGGAAGGCCAATGTGT
GAGTTTCGATCTGATGTGTGAAGCGTCATTCGCTTGCATCTGTTCTCTGCTCGCTAGCTTTGAGT
GACCGGGGCTCGTTCCGAAACTCTTCAGCGGATGACTCGCGGAGT
Found at i:302633 original size:24 final size:24
Alignment explanation
Indices: 302604--302649 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
302594 GTCAAGACTG
302604 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
302628 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
302650 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 302104 -- 302603
TGAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 302650 -- 303149
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCA
TATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAA
ATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCC
TTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCTTTGCG
AGTGCTTTTTTCATTCGCATTCGCGGAAGGCCAATGTGTGAGTTTCGATCTGATGTGTGAAGCGT
CATTCGCTTGCATCTGTTCTCTGCTCGCTAGCTTTGAGTGACCGG
Found at i:302689 original size:28 final size:28
Alignment explanation
Indices: 302657--302839 Score: 318
Period size: 28 Copynumber: 6.5 Consensus size: 28
302647 ATTGCAATTC
302657 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
302685 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
302713 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
302741 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
302769 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
302797 AATGCCATTAGTACTCACTGTG-CAAACA
1 AATGCCATTAGTACTCACT-TGACAAACA
302825 AATGCCATTAGTACT
1 AATGCCATTAGTACT
302840 TTCCATATGC
Statistics
Matches: 152, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
27 2 0.01
28 146 0.96
29 4 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 302157 -- 302656
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 302840 -- 303339
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCA
TCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATT
GATCCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTGAAGCTTCGCT
TTGCGAGTGCTTTTTTCATTCGCATTCGCGGAAGGCCAATGTGTGAGTTTCGATCTGATGTGTGA
AGCGTCATTCGCTTGCATCTGTTCTCTGCTCGCTAGCTTTGAGTGACCGGGGCTCGTTCCGAAAC
TCTTCAGCGGATGACTCGCGGAGTATACTGCGCTCGTTCGCTCGTTGCTCATATCGCAAGCAACT
ACTCAAGGCAAGCCGCTTCTCATACAGCTCGTGGAGTGCTTATGATCTCCCCCGAGGCCGTGTCC
TCCTTTCGAACAGGCGGGTTTTGGTCAAGTCCTTCGGATTCTCCC
Found at i:302894 original size:48 final size:48
Alignment explanation
Indices: 302798--302894 Score: 140
Period size: 48 Copynumber: 2.0 Consensus size: 48
302788 TGACAAACAA
* * **
302798 ATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
* *
302846 ATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
302894 A
1 A
302895 CCAAAATCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (48 bp):
ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
Left flanking sequence: Indices 302298 -- 302797
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAA
Right flanking sequence: Indices 302895 -- 303394
CCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATAC
AATGACAATTGATCCTTTCCATCAACCATCAAACCTTGATGTCCTGAAAGTCAAAGTTGTCCCTG
AAGCTTCGCTTTGCGAGTGCTTTTTTCATTCGCATTCGCGGAAGGCCAATGTGTGAGTTTCGATC
TGATGTGTGAAGCGTCATTCGCTTGCATCTGTTCTCTGCTCGCTAGCTTTGAGTGACCGGGGCTC
GTTCCGAAACTCTTCAGCGGATGACTCGCGGAGTATACTGCGCTCGTTCGCTCGTTGCTCATATC
GCAAGCAACTACTCAAGGCAAGCCGCTTCTCATACAGCTCGTGGAGTGCTTATGATCTCCCCCGA
GGCCGTGTCCTCCTTTCGAACAGGCGGGTTTTGGTCAAGTCCTTCGGATTCTCCCTCCCGGGCAA
GTCACTCGGGCAGAACCCAAGCATGTACAAGTAGCCGTGAAGATG
Found at i:304036 original size:31 final size:31
Alignment explanation
Indices: 303998--304072 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
303988 GGTTGGTCAA
* *
303998 GGGAGAGGGAGTGAGAACTCTCTCGATCTAG
1 GGGAGAGGGAGTGAGAACTCACTCGACCTAG
304029 GGGAGAGGGAGTGAGAACTCACTCGACCTAG
1 GGGAGAGGGAGTGAGAACTCACTCGACCTAG
*
304060 GGGGGAGGGAGTG
1 GGGAGAGGGAGTG
304073 GAGGCGCCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.25, C:0.15, G:0.45, T:0.15
Consensus pattern (31 bp):
GGGAGAGGGAGTGAGAACTCACTCGACCTAG
Left flanking sequence: Indices 303498 -- 303997
CAAAGGTGTATCAATTGCGAAATGCTTTGATATAGATATGTTTATCAGAAAAGGTGTAGATTCGC
GGAGTTAGGAGCGAGACTCATAACAGGAGTTGCTGAGATGAAGAAGTAAACTAGAAACTTGGATT
GCGCCTTTGACTCGAGAACTCGATCAACGGAATCTGAAACTCAAAACTAGAAATGCTACAGTAGA
GTGCTCACGCACTGCACGATCCCGATACACCAACGGAAACAATCTTTCACTCCTGACGTCGTTTG
ACGCATCAGATCTCTCCATTTTGTCTGAACTTTCGCTCGCGCCTTTATCAACTTGCCTTTATATG
CTTTTTTATATGCTGACGCGTATAAACTCTAAAAGCCACCCGTTCGCCCCAAACTCTTTTTCAAA
GAATCACCGTCAACTCGGTTCGCTAATCCAGTAAATTGGGATCATTCGTTTGAGGTCCCGTGTCT
GTACTTTGGGCCTGATACGCGTAGGTACAGTCGAGGGTTGGTCAA
Right flanking sequence: Indices 304073 -- 304572
GAGGCGCCGGACAGGACGAGTCTTGTCCGGTAGTTAAGGCCAACAACCTTGAAGAGGAGGTGTCC
ATAGTGCATTGTTGGTGGGTCGTGCTCTTTGGTTAATTACGAGATACCCTGGTTCCGTTTGATTA
CTCAAACATAGAGAAGATATGCCTGGCATTGGTGTTTGCAGTACAAAAGCTCAGTTCCTGGAACA
TCCCGTTCGGCTCATATCGAAAGCAGATCCGCAGATTCCACACCATAAAGCCAACTTTGCTCTCG
AGCCTGTCTTTTGGGAGCTATATTAGCACTAGTCTTTCAGACTGGAGGATAGGGGACAGGCGGGG
GACAGGGATTGTCTTCATGACCCCAGAAAGGTCCAAGATCCCTGACTCGTTCACACTGACTTCAG
CAGCTTCAAACAACGGAATATTCAGCCTGGGTCTCACTTTGGAGCCTCTGACAGTGTATGGAAAA
GATCGTTAATCAACTGAAAGGGATCTACACTATTCAGAAAGAGGA
Found at i:311058 original size:22 final size:22
Alignment explanation
Indices: 311028--311092 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 22
311018 ATCAGTGACC
311028 TTATGGAAAGGTCAGGACTCAT
1 TTATGGAAAGGTCAGGACTCAT
* * *
311050 TTCTTGAAAGGTGAGGA--C-T
1 TTATGGAAAGGTCAGGACTCAT
*
311069 TTATGGAAAGGTCAAGACTCAT
1 TTATGGAAAGGTCAGGACTCAT
311091 TT
1 TT
311093 GTATGTCATC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
19 14 0.42
20 1 0.03
21 1 0.03
22 17 0.52
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (22 bp):
TTATGGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 310528 -- 311027
TCCGCGATACAACGAGCAAAGCACTCGCAAAGCCCTGACGCAATTTGCGAGTGTCCATCACGTCA
CGTCACGTCACGAGCAAAGCCCCCAGCTTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAA
TGCTGAAAGAAGGGAAAAGGTACATAGTGAATCTCATTTTGTCTGAATCAGCCCTACGCTTTGCG
AGTGCTTTGTGGGCACTTTTCTGATGAGTTCATTTCAGATGAAAAAGAAGGCTTTGTTCTGACGT
GACATGACCTTCAAGTTTAAAAGAGTGCTGATTGAGGCAAAATGAGATTCACTATGTACCTTGAT
GTCCTTTCAAGTCCAAAAAAATGACATTCACTCTGATAGTGGTTCGTTTGGACATTGAAAGCCAA
AGCGAAGCGAGTGTGCTTTGTCAAAGGTCAAGCCAAAGCTTTGCGAGTGTGCTTCAGATTTGTGG
TATGGTCAGCACTTTTCAGGATTTGTCTGACCTGAATCAGTGACC
Right flanking sequence: Indices 311093 -- 311592
GTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAAAAGGTGAAGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:311144 original size:19 final size:17
Alignment explanation
Indices: 311120--311167 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
311110 ACCATACCAA
311120 AAAGGTCAGGACTTTCTGG
1 AAAGGTCAGGAC-TTCT-G
*
311139 AAAGGTCAAGAC-TCTG
1 AAAGGTCAGGACTTCTG
311155 AAAGGTCAGGACT
1 AAAGGTCAGGACT
311168 AATGAGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 12 0.46
17 3 0.12
19 11 0.42
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (17 bp):
AAAGGTCAGGACTTCTG
Left flanking sequence: Indices 310620 -- 311119
TTGACGAGCAAAGCCCACAAAGCACTCGCAACTTTGAATGCTGAAAGAAGGGAAAAGGTACATAG
TGAATCTCATTTTGTCTGAATCAGCCCTACGCTTTGCGAGTGCTTTGTGGGCACTTTTCTGATGA
GTTCATTTCAGATGAAAAAGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGTTTAAAAGAGTG
CTGATTGAGGCAAAATGAGATTCACTATGTACCTTGATGTCCTTTCAAGTCCAAAAAAATGACAT
TCACTCTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAAAGG
TCAAGCCAAAGCTTTGCGAGTGTGCTTCAGATTTGTGGTATGGTCAGCACTTTTCAGGATTTGTC
TGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Right flanking sequence: Indices 311168 -- 311667
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGGTGAAGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTAC
Found at i:311426 original size:76 final size:78
Alignment explanation
Indices: 311300--311713 Score: 306
Period size: 76 Copynumber: 5.0 Consensus size: 78
311290 TTATCAAAAA
* *
311300 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
311363 GACTGATTCTTCT
66 GACTGATTCTTCT
*
311376 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
311441 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * *
311458 GGACAGGACCAAT-TGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
1 GGTCAAGA-C--TGT-C--TT-TCA---CAGTCAGGACTAACCTTACC---AA---AAAGGTCAA
* * *
311520 GACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
50 GACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
311555 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
311618 GACTGATTCTTCT
66 GACTGATTCTTCT
311631 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
311696 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
311712 GG
1 GG
311714 AAAGGTCAAG
Statistics
Matches: 265, Mismatches: 34, Indels: 73
0.71 0.09 0.20
Matches are distributed among these distances:
76 106 0.40
77 4 0.02
79 4 0.02
80 4 0.02
81 38 0.14
82 6 0.02
83 3 0.01
84 15 0.06
85 2 0.01
87 5 0.02
88 1 0.00
89 14 0.05
90 15 0.06
91 1 0.00
92 5 0.02
93 7 0.03
94 2 0.01
95 23 0.09
96 3 0.01
97 7 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 310800 -- 311299
AAGTTTAAAAGAGTGCTGATTGAGGCAAAATGAGATTCACTATGTACCTTGATGTCCTTTCAAGT
CCAAAAAAATGACATTCACTCTGATAGTGGTTCGTTTGGACATTGAAAGCCAAAGCGAAGCGAGT
GTGCTTTGTCAAAGGTCAAGCCAAAGCTTTGCGAGTGTGCTTCAGATTTGTGGTATGGTCAGCAC
TTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAG
GTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGG
TCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTTGATTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 311714 -- 312213
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCA
Found at i:311447 original size:43 final size:43
Alignment explanation
Indices: 311278--311433 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
311268 TTGTATGTCA
* * *
311278 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * * *
311321 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
311359 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
311397 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
311434 GAAAGGTCAG
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.13
35 1 0.01
37 5 0.06
38 19 0.22
39 5 0.06
41 1 0.01
43 45 0.52
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 310778 -- 311277
GTTCTGACGTGACATGACCTTCAAGTTTAAAAGAGTGCTGATTGAGGCAAAATGAGATTCACTAT
GTACCTTGATGTCCTTTCAAGTCCAAAAAAATGACATTCACTCTGATAGTGGTTCGTTTGGACAT
TGAAAGCCAAAGCGAAGCGAGTGTGCTTTGTCAAAGGTCAAGCCAAAGCTTTGCGAGTGTGCTTC
AGATTTGTGGTATGGTCAGCACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAG
GTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGGAAAGGTCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAAAAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGGTGAAGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 311434 -- 311933
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTCAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
Found at i:311604 original size:43 final size:42
Alignment explanation
Indices: 311511--311745 Score: 170
Period size: 43 Copynumber: 5.7 Consensus size: 42
311501 CCAAAAATGG
* * * *
311511 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTCAAAGTCAGGACTAACCTTACCAA
311552 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCAAAGTCAGGACTAACCTTACCAA
* * * **
311595 AAAGATCAAGACTATC-T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTCAAAGTCAGGACT-AACCTTACCAA
* *
311630 --TGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTCAAAGTCAGGACTAACCTTACCAA
* ** ***
311671 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTCAAA-GTCAGGACT-AACCTTACCAA
*
311714 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTCAAA-GTCAGGACT
311746 CATTCTTCTG
Statistics
Matches: 155, Mismatches: 23, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
33 11 0.07
35 1 0.01
37 6 0.04
38 16 0.10
39 6 0.04
41 17 0.11
42 9 0.06
43 85 0.55
44 4 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 311011 -- 311510
GACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTCATTTCTTGAAAGGTGAGGACTTTATGGA
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTTCTGGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTTGATTGAAAGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 311746 -- 312245
CATTCTTCTGGAAAGGTCAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
Found at i:311695 original size:19 final size:19
Alignment explanation
Indices: 311671--311804 Score: 112
Period size: 19 Copynumber: 6.7 Consensus size: 19
311661 ACCTTACCAA
*
311671 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAGGACTGTCTTG
311690 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAGGACTG--TC-T-T-G
*
311714 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAGGACTGTCTTG
*
311733 AAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAGGACT--GTC-T-T-G
*
311757 AAAGGTCAGGACTTTCTTG
1 AAAGGTCAGGACTGTCTTG
*
311776 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAGGACTGTCTTG
311792 AAAGGTCAGGACT
1 AAAGGTCAGGACT
311805 AATGAGAATG
Statistics
Matches: 98, Mismatches: 6, Indels: 24
0.77 0.05 0.19
Matches are distributed among these distances:
16 13 0.13
17 2 0.02
19 38 0.39
20 2 0.02
21 6 0.06
22 7 0.07
23 2 0.02
24 28 0.29
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (19 bp):
AAAGGTCAGGACTGTCTTG
Left flanking sequence: Indices 311171 -- 311670
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GGTGAAGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 311805 -- 312304
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGAT
Found at i:311716 original size:24 final size:24
Alignment explanation
Indices: 311689--311769 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
311679 AGACTGTCTT
311689 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
311713 GAAAGGTCAAGACTG--TC-T-T-
1 GAAAGGTCAGGACTGATTCTTCTG
*
311732 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
311756 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
311770 TTCTTGAAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 28 0.57
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 311189 -- 311688
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTGAAGACTTGATTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 311770 -- 312269
TTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
Found at i:311751 original size:43 final size:43
Alignment explanation
Indices: 311671--311789 Score: 202
Period size: 43 Copynumber: 2.8 Consensus size: 43
311661 ACCTTACCAA
*
311671 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
311714 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
* * *
311757 AAAGGTCAGGACTTTCTTGAAAGGTCAAGACTC
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
311790 TGAAAGGTCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 311171 -- 311670
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GGTGAAGACTTGATTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 311790 -- 312289
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
AGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGA
Found at i:311795 original size:16 final size:16
Alignment explanation
Indices: 311774--311804 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
311764 AGGACTTTCT
311774 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
311790 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
311805 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 311274 -- 311773
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTTTCT
Right flanking sequence: Indices 311805 -- 312304
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGAT
Done.