Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 9 of 20
Found at i:245895 original size:24 final size:23
Alignment explanation
Indices: 245866--245950 Score: 106
Period size: 24 Copynumber: 3.8 Consensus size: 23
245856 GTCAAGACTG
245866 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
*
245890 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
245909 TCTTGAAAGGTCAGGACTCATTAT
1 TCTTGAAAGGTCAGGACTGATT-T
245933 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
245951 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATTT
Left flanking sequence: Indices 245366 -- 245865
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 245951 -- 246450
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATA
CCAAAAATTGTATGCTATTAGTACTCACTTGACAAAAAATTGTATGTCATTAGTACTCACTATAC
CAAAAAATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
Found at i:245936 original size:43 final size:43
Alignment explanation
Indices: 245725--245950 Score: 214
Period size: 43 Copynumber: 5.3 Consensus size: 43
245715 ACCTTACCAA
* *
245725 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTG
* * **
245768 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTTA-TC-AA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT--CATTATTCTTG
* * * * ***
245809 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTGA--CCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT--CATTATTCTTG
* *
245852 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTG
245895 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTG
*
245938 AAAGGTCAGGACT
1 AAAGGTCAAGACT
245951 CATTGCAATT
Statistics
Matches: 152, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
41 24 0.16
42 11 0.07
43 117 0.77
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTG
Left flanking sequence: Indices 245225 -- 245724
TCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 245951 -- 246450
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATA
CCAAAAATTGTATGCTATTAGTACTCACTTGACAAAAAATTGTATGTCATTAGTACTCACTATAC
CAAAAAATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
Found at i:245994 original size:28 final size:28
Alignment explanation
Indices: 245962--246138 Score: 322
Period size: 28 Copynumber: 6.3 Consensus size: 28
245952 ATTGCAATTC
245962 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
245990 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
246018 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
246046 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
246074 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
246102 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
246130 AATGCCATT
1 AATGCCATT
246139 TTCCATACCA
Statistics
Matches: 148, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 147 0.99
29 1 0.01
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTGTACAAACA
Left flanking sequence: Indices 245462 -- 245961
CTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGAC
TCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTATTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 246139 -- 246638
TTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACAAAAAATTGTATGTCATTAGTACTC
ACTATACCAAAAAATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTT
GATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAGGA
CTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
Found at i:246216 original size:32 final size:32
Alignment explanation
Indices: 246143--246230 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 32
246133 GCCATTTTCC
246143 ATACCAAAAATTGTATG-CTATTAGTACTCACT
1 ATACCAAAAATTGTATGTC-ATTAGTACTCACT
*
246175 -TGACAAAAAATTGTATGTCATTAGTACTCACT
1 AT-ACCAAAAATTGTATGTCATTAGTACTCACT
246207 ATACCAAAAA----ATGTCATTAGTACT
1 ATACCAAAAATTGTATGTCATTAGTACT
246231 TTTGAAGGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
28 14 0.27
31 1 0.02
32 34 0.67
33 2 0.04
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (32 bp):
ATACCAAAAATTGTATGTCATTAGTACTCACT
Left flanking sequence: Indices 245643 -- 246142
GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGG
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTATTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACA
AACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCC
Right flanking sequence: Indices 246231 -- 246730
TTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
ATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGT
Found at i:246293 original size:16 final size:16
Alignment explanation
Indices: 246272--246302 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
246262 AGGACTTGAT
246272 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
246288 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
246303 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 245772 -- 246271
GTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTATTCTTGAAAGGTCAGGACTCATTGCAATTCAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCT
ATTAGTACTCACTTGACAAAAAATTGTATGTCATTAGTACTCACTATACCAAAAAATGTCATTAG
TACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGAT
Right flanking sequence: Indices 246303 -- 246802
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
Found at i:246506 original size:43 final size:42
Alignment explanation
Indices: 246442--246611 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
246432 TTGTATGTCA
* * *
246442 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
246485 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
246523 TCAGGACTGATTCTT--C----TGGTCAATACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
246561 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
246604 TCAGGACT
1 TCAGGACT
246612 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 245942 -- 246441
GTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACAAAAAATTGTATGTCATTAGTAC
TCACTATACCAAAAAATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGAC
TTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 246612 -- 247111
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAA
GACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
Found at i:246783 original size:19 final size:19
Alignment explanation
Indices: 246759--246876 Score: 101
Period size: 19 Copynumber: 5.7 Consensus size: 19
246749 ACCTTACCAA
246759 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
246778 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
246802 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
246821 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* *
246845 AAAGGTCAGGACTGTCTGG
1 AAAGGTCAAGACTGTCTTG
246864 AAAGGTCAAGACT
1 AAAGGTCAAGACT
246877 CATTTGTATG
Statistics
Matches: 82, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
19 44 0.54
20 1 0.01
21 1 0.01
22 1 0.01
23 1 0.01
24 34 0.41
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 246259 -- 246758
GTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGA
AAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 246877 -- 247376
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTC
ATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTC
Found at i:246802 original size:24 final size:24
Alignment explanation
Indices: 246773--246858 Score: 119
Period size: 24 Copynumber: 3.8 Consensus size: 24
246763 GTCAAGACTG
246773 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
246797 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
246816 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
246840 TCTTGAAAGGTCAGGACTG
1 TCTTGAAAGGTCAGGACTG
246859 TCTGGAAAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 246273 -- 246772
GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAGGACTCT
CTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 246859 -- 247358
TCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCA
CCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
Found at i:246839 original size:43 final size:43
Alignment explanation
Indices: 246674--246880 Score: 208
Period size: 43 Copynumber: 4.9 Consensus size: 43
246664 ACCAAAAATG
* * * *
246674 GAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCA
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT-A
* * ** *
246715 AAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCA
1 GAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTCATTCTT-CTA
* * *
246758 AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTA
*
246801 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTA
* * *
246844 GAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
246881 TGTATGTCAT
Statistics
Matches: 145, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
41 16 0.11
42 11 0.08
43 114 0.79
44 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (43 bp):
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTA
Left flanking sequence: Indices 246174 -- 246673
TTGACAAAAAATTGTATGTCATTAGTACTCACTATACCAAAAAATGTCATTAGTACTTTTGAAGG
TTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
AAAAGTCAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 246881 -- 247380
TGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTT
GTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGA
Found at i:247111 original size:76 final size:78
Alignment explanation
Indices: 247023--247434 Score: 277
Period size: 76 Copynumber: 5.0 Consensus size: 78
247013 TTATCAAAAA
*
247023 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
247086 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
247099 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--T
* * ***
247164 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * * * * *
247181 GGACAGGACCAAT-TGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
1 GGTCAAGA-C--TGT-C--TT-TCA---CAGTCAGGACTAACCTTACCAAAAA--G--A--TCAA
* * *
247243 GACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
50 GACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
247278 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
247341 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
247354 GGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG-AA--
247418 TCAGGACTGATTCTTCT
62 TCAGGACTGATTCTTCT
247435 TGAAAGGTCA
Statistics
Matches: 262, Mismatches: 34, Indels: 75
0.71 0.09 0.20
Matches are distributed among these distances:
75 1 0.00
76 104 0.40
77 4 0.02
79 4 0.02
80 4 0.02
81 36 0.14
82 6 0.02
83 3 0.01
84 11 0.04
85 2 0.01
86 1 0.00
87 3 0.01
88 2 0.01
89 19 0.07
90 20 0.08
91 2 0.01
92 3 0.01
93 7 0.03
94 2 0.01
95 18 0.07
96 3 0.01
97 7 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 246523 -- 247022
TCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAG
GTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCC
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 247435 -- 247934
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
TTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTATGGAAAGGTCAGGATTCTT
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATTGTCA
TTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAA
TAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAA
GGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCAT
Found at i:247170 original size:43 final size:43
Alignment explanation
Indices: 247001--247156 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
246991 TTGTATGTCA
* * *
247001 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * * *
247044 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
247082 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
247120 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
247157 GAAAGGTCAG
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.13
35 1 0.01
37 5 0.06
38 19 0.22
39 5 0.06
41 1 0.01
43 45 0.52
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 246501 -- 247000
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCCAT
ACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 247157 -- 247656
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
CAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTAT
GGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTG
Found at i:247418 original size:19 final size:19
Alignment explanation
Indices: 247394--247468 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
247384 ACCTTACCAA
247394 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
247413 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
247437 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
247456 AAAGGTCAGGACT
1 AAAGGTCAAGACT
247469 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 30 0.62
24 18 0.38
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 246894 -- 247393
TACTCACCATACCAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCCATACC
AAACAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 247469 -- 247968
CATTCTTCTTGAACAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAA
TACAAAAAATTATGGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCA
CCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGT
CTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAA
TTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTC
Found at i:247426 original size:43 final size:42
Alignment explanation
Indices: 247234--247468 Score: 206
Period size: 43 Copynumber: 5.7 Consensus size: 42
247224 CCAAAAATGG
* *
247234 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* *
247275 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
247318 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * *
247353 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* ***
247394 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
247437 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
247469 CATTCTTCTT
Statistics
Matches: 156, Mismatches: 22, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
33 11 0.07
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 9 0.06
43 87 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 246734 -- 247233
TCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCACCTTA
CCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 247469 -- 247968
CATTCTTCTTGAACAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAA
TACAAAAAATTATGGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCA
CCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGT
CTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAA
TTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTC
Found at i:247437 original size:24 final size:24
Alignment explanation
Indices: 247408--247481 Score: 95
Period size: 24 Copynumber: 3.3 Consensus size: 24
247398 GTCAAGACTG
247408 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
247432 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
247451 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
247475 TCTTGAA
1 TCTTGAA
247482 CAGGACTCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
19 17 0.40
24 25 0.60
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 246908 -- 247407
AACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGAC
TTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 247482 -- 247981
CAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTAT
GGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
GTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAG
GACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Found at i:247474 original size:43 final size:43
Alignment explanation
Indices: 247354--247481 Score: 177
Period size: 43 Copynumber: 3.0 Consensus size: 43
247344 TGATTCTTCT
** * ***
247354 GGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAA
247397 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
*
247440 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
247482 CAGGACTCAT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 74 0.96
44 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (43 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
Left flanking sequence: Indices 246854 -- 247353
GACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGG
ACTCACCTTACCATACAAGACTCATTTGTATGTCCATACCAAACAGGTCAGGACTTTCCGGTCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 247482 -- 247981
CAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTAT
GGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
GTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAG
GACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Found at i:247532 original size:28 final size:28
Alignment explanation
Indices: 247500--247564 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
247490 ATTGCAATTC
247500 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
247528 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
247556 AATGCCATT
1 AATGCCATT
247565 TTCCATCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 247000 -- 247499
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATTGCAATTC
Right flanking sequence: Indices 247565 -- 248064
TTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTATGGAAAGGTCAGGATTCTT
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATTGTCA
TTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAA
TAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAA
GGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGA
Found at i:247637 original size:19 final size:20
Alignment explanation
Indices: 247613--247667 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 20
247603 AAAAATTATG
247613 GAAAGGTCAGGATTCTT-TT
1 GAAAGGTCAGGATTCTTCTT
247632 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGG----ATTCTTCTT
247656 GAAAGGTCAGGA
1 GAAAGGTCAGGA
247668 CTAATGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
19 11 0.35
20 1 0.03
23 6 0.19
24 13 0.42
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (20 bp):
GAAAGGTCAGGATTCTTCTT
Left flanking sequence: Indices 247113 -- 247612
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAA
GGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATTGCAATTCAAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTC
CATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTATG
Right flanking sequence: Indices 247668 -- 248167
CTAATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTT
ATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTT
AAAGATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGT
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGT
ACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAG
GTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
Found at i:247659 original size:24 final size:23
Alignment explanation
Indices: 247624--247669 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
247614 AAAGGTCAGG
247624 ATTCTTTTGAAAGGTCAGGACTC
1 ATTCTTTTGAAAGGTCAGGACTC
247647 ATTCTTCTTGAAAGGTCAGGACT
1 ATTCTT-TTGAAAGGTCAGGACT
247670 AATGAGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (23 bp):
ATTCTTTTGAAAGGTCAGGACTC
Left flanking sequence: Indices 247124 -- 247623
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATTGCAATTCAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATT
AGTGCTGACTATGGCATTAATACAAAAAATTATGGAAAGGTCAGG
Right flanking sequence: Indices 247670 -- 248169
AATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTAT
CAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAA
AGATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTAT
GCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTAC
TTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAGGT
CAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
Found at i:247780 original size:41 final size:41
Alignment explanation
Indices: 247721--247800 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
247711 ATCAACAATG
* * *
247721 AGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAATA
*
247762 AGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAA
247801 GATCAGGACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (41 bp):
AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAATA
Left flanking sequence: Indices 247221 -- 247720
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
TCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
ACAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTA
TGGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 247801 -- 248300
GATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAGGTC
AGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTC
AGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCA
GGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAA
Found at i:247846 original size:19 final size:19
Alignment explanation
Indices: 247822--247916 Score: 111
Period size: 19 Copynumber: 4.7 Consensus size: 19
247812 ATTTTCCTTA
247822 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAGGACTCTTTTG
* *
247841 AAAGGTCAAGACT-TGATTG
1 AAAGGTCAGGACTCT-TTTG
247860 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAGGA--C--TCTT-TTG
247884 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAGGACTCTTTTG
247903 AAAGGTCAGGACTC
1 AAAGGTCAGGACTC
247917 ATTGCAATTG
Statistics
Matches: 65, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
18 1 0.02
19 42 0.65
20 4 0.06
21 1 0.02
22 1 0.02
23 1 0.02
24 15 0.23
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (19 bp):
AAAGGTCAGGACTCTTTTG
Left flanking sequence: Indices 247322 -- 247821
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATTGCAATTCAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGT
GCTGACTATGGCATTAATACAAAAAATTATGGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCA
TCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACC
AAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTA
Right flanking sequence: Indices 247917 -- 248416
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CTTATGGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACC
CTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGTCATTAGTACTC
ACTGTACAACAAAATGTCATTAGTATTCACTATACCAAAAAGATG
Found at i:247869 original size:62 final size:62
Alignment explanation
Indices: 247798--247915 Score: 184
Period size: 62 Copynumber: 1.9 Consensus size: 62
247788 TACTGTCTTT
*
247798 AAAGATCAGGACTGATT-TTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTG
1 AAAGATCAGGACTCATTCTT-CTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTG
* * *
247860 AAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACT
1 AAAGATCAGGACTCATTCTTCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACT
247916 CATTGCAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
62 49 0.96
63 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (62 bp):
AAAGATCAGGACTCATTCTTCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTG
Left flanking sequence: Indices 247298 -- 247797
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAACAGGACTCATT
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTATGGAAAGGTCAG
GATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGT
CTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTT
Right flanking sequence: Indices 247916 -- 248415
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCTTATGGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGTCATTAGTACT
CACTGTACAACAAAATGTCATTAGTATTCACTATACCAAAAAGAT
Found at i:247886 original size:43 final size:42
Alignment explanation
Indices: 247834--247919 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 42
247824 AGGTCAGGAC
247834 TCTTTTGAAAGGTCAAGACT-TGATTGAAAGGTCAGGACTCAT
1 TCTTTTGAAAGGTCAAGACTCT-ATTGAAAGGTCAGGACTCAT
* *
247876 TCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCAT
1 TCTT-TTGAAAGGTCAAGACTCTATTGAAAGGTCAGGACTCAT
247919 T
1 T
247920 GCAATTGTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
42 4 0.10
43 35 0.88
44 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (42 bp):
TCTTTTGAAAGGTCAAGACTCTATTGAAAGGTCAGGACTCAT
Left flanking sequence: Indices 247334 -- 247833
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAACAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGC
ATTAATACAAAAAATTATGGAAAGGTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGT
ACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAAT
ACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTCAGGAC
Right flanking sequence: Indices 247920 -- 248419
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTT
ATGGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGTCATTAGTACTCACT
GTACAACAAAATGTCATTAGTATTCACTATACCAAAAAGATGCCA
Found at i:248092 original size:16 final size:17
Alignment explanation
Indices: 248053--248101 Score: 73
Period size: 16 Copynumber: 2.8 Consensus size: 17
248043 TTTCCTTATG
248053 GAAAGGTCAGGACTCTTTT
1 GAAAGGTCAGGACTC--TT
248072 GAAAGGTCAGGACTC-T
1 GAAAGGTCAGGACTCTT
248088 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
248102 AATGAGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 15 0.50
19 15 0.50
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (17 bp):
GAAAGGTCAGGACTCTT
Left flanking sequence: Indices 247553 -- 248052
ACAAATGCCATTTTCCATCAAAAATTAGTGCTGACTATGGCATTAATACAAAAAATTATGGAAAG
GTCAGGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAG
ACTGTCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGA
TTTTCCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTC
ACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCA
TTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATG
Right flanking sequence: Indices 248102 -- 248601
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGTC
ATTAGTACTCACTGTACAACAAAATGTCATTAGTATTCACTATACCAAAAAGATGCCATTAGTGC
TGACCATACCACAAATTGTATGCCATTATCCATCAAACAAATTGTATACCATTATCCATCAAACA
AATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTATA
GTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTC
Found at i:248170 original size:43 final size:43
Alignment explanation
Indices: 248122--248203 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
248112 ATTGAGGAAA
* * *
248122 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
*
248165 AGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTT
248204 GAAAGATCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (43 bp):
AGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 247622 -- 248121
GGATTCTTTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTG
TCTTTAAATAAGTACTAACCTTACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTT
CCTTAAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTT
GACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAG
TACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGACTCTTTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 248204 -- 248703
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAACAAAATGTCATTAGTACTCACTGTACAACAAAATGTCATTAGTATT
CACTATACCAAAAAGATGCCATTAGTGCTGACCATACCACAAATTGTATGCCATTATCCATCAAA
CAAATTGTATACCATTATCCATCAAACAAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCA
CACTCGCTTCGCTTTGGCTCTGCCTATAGTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGC
ACGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGATGGTTGCTTCAAAATGAAAATG
ACGTCAGCGTAGTTTGATAAAAACTGCGGAGCAAGCCTACATGGG
Found at i:248296 original size:28 final size:28
Alignment explanation
Indices: 248273--248424 Score: 191
Period size: 28 Copynumber: 5.4 Consensus size: 28
248263 TGACAATTGT
*
248273 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
248301 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
248329 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* *
248357 ATGTCATTAGTACTCAC-TGTACAACAAA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
* * *
248385 ATGTCATTAGTATTCACTAT-ACCAAAAAG
1 ATGCCATTAGTACTCACT-TGA-CAAAAAA
248414 ATGCCATTAGT
1 ATGCCATTAGT
248425 GCTGACCATA
Statistics
Matches: 111, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
27 2 0.02
28 93 0.84
29 15 0.14
30 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 247773 -- 248272
TACCAAAAAGGTCAATACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTCAGGACTCTT
TTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTG
AAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCT
CACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATG
CCATTAGTACTTTCCTTATGGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 248425 -- 248924
GCTGACCATACCACAAATTGTATGCCATTATCCATCAAACAAATTGTATACCATTATCCATCAAA
CAAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTA
TAGTTGTGCACTGACCTTGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTTG
CTCGTGACGTGACGTGATGGTTGCTTCAAAATGAAAATGACGTCAGCGTAGTTTGATAAAAACTG
CGGAGCAAGCCTACATGGGTGCGCGGTATCACCTGGGCGGGGCGGGGAGGTGCGAGCTTCCACTC
GAAACCCTTTTCGGTCACTCGCTTTAGGGCATTCCGATCGCTTCTCGTCAAACTCCCTCGCCCCT
GACTGGAAAGAAAAAAGGTCAGTTATCAGGGCCCTATGCATTCCATTCCGGAAAGGTTTTGGAAC
AAGCAAAAATAGGAATGAAGACCGATCGCGTCTCGAGTGGAATTT
Found at i:248466 original size:26 final size:26
Alignment explanation
Indices: 248437--248506 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
248427 TGACCATACC
248437 ACAAATTGTATGCCATTATCCATCAA
1 ACAAATTGTATGCCATTATCCATCAA
*
248463 ACAAATTGTATACCATTATCCATCAA
1 ACAAATTGTATGCCATTATCCATCAA
248489 ACAAATTGTATGCCATTA
1 ACAAATTGTATGCCATTA
248507 GTGTTTCCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (26 bp):
ACAAATTGTATGCCATTATCCATCAA
Left flanking sequence: Indices 247937 -- 248436
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCAT
ATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCTTATGGAAAGGTCAGGACT
CTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTC
ATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAACAAAATGTCATTAGTACTCACTGTACAACAAAATGTCAT
TAGTATTCACTATACCAAAAAGATGCCATTAGTGCTGACCATACC
Right flanking sequence: Indices 248507 -- 249006
GTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTCTGCCTATAGTTGTGCACTGACCT
TGACCTTTCAATTGCACAAAGCACGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGA
TGGTTGCTTCAAAATGAAAATGACGTCAGCGTAGTTTGATAAAAACTGCGGAGCAAGCCTACATG
GGTGCGCGGTATCACCTGGGCGGGGCGGGGAGGTGCGAGCTTCCACTCGAAACCCTTTTCGGTCA
CTCGCTTTAGGGCATTCCGATCGCTTCTCGTCAAACTCCCTCGCCCCTGACTGGAAAGAAAAAAG
GTCAGTTATCAGGGCCCTATGCATTCCATTCCGGAAAGGTTTTGGAACAAGCAAAAATAGGAATG
AAGACCGATCGCGTCTCGAGTGGAATTTTCCAGTCTTGCCCCGGAGTTACGGTAGACCAATTGGA
ATGACAAAGGATAGACTGGACCCAATTGACCATTCATTGGTCAAT
Found at i:260286 original size:19 final size:16
Alignment explanation
Indices: 260262--260308 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
260252 AAAAGTCAGG
260262 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTC---TGA
*
260281 AAGGTCAAGACTCTGA
1 AAGGTCAGGACTCTGA
260297 AAGGTCAGGACT
1 AAGGTCAGGACT
260309 AATGAGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 14 0.54
19 12 0.46
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (16 bp):
AAGGTCAGGACTCTGA
Left flanking sequence: Indices 259762 -- 260261
AGTCGTCTAGTCTTTTAGCTTATAGTGTCTAGAACTATAAGCACGAAAAAACAACAACCTTTCTT
AGCTTAGCGGGCGTCAAAGCACTCGCAAAGCGAAGAATGACGTCAGGGCTTTGCACAAAGCCCTC
TTTGCGAGTGCTTTGTGCAATCACGAGCTTTGCCAAAGCGAAGCGAGTGTGCTTTGCCCTGACGC
AATGACTTTCACTCATCAAAATGACATGAACTCTTTGGTCAGGGTCAGCATGAATGGCATACAAT
TGCCATTTTCCATCAAAAAGGGTCAGCACTTTTCAGGATTTGTCTGACCTGAATCAGTGACCTTC
AGTCTCATTAATGGAAAGGAAAGGATTTTATGGAAAGATTATGGAAAGGAAAGGCAAAATGGCAA
TTCTTTAGGAAAAGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAAGGTCAAGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 260309 -- 260808
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AACAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
Found at i:260525 original size:43 final size:43
Alignment explanation
Indices: 260376--260529 Score: 134
Period size: 43 Copynumber: 3.8 Consensus size: 43
260366 CTTATCAAAA
*
260376 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
1 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAC
* * * *
260419 CAAAAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--
1 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA-CCTTAC
* *
260456 C----TGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
1 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAC
*
260495 CAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 CAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
260530 TTTGATGGAA
Statistics
Matches: 85, Mismatches: 13, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
33 11 0.13
35 1 0.01
37 5 0.06
38 19 0.22
39 5 0.06
41 1 0.01
42 4 0.05
43 39 0.46
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (43 bp):
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAC
Left flanking sequence: Indices 259876 -- 260375
TTTGCACAAAGCCCTCTTTGCGAGTGCTTTGTGCAATCACGAGCTTTGCCAAAGCGAAGCGAGTG
TGCTTTGCCCTGACGCAATGACTTTCACTCATCAAAATGACATGAACTCTTTGGTCAGGGTCAGC
ATGAATGGCATACAATTGCCATTTTCCATCAAAAAGGGTCAGCACTTTTCAGGATTTGTCTGACC
TGAATCAGTGACCTTCAGTCTCATTAATGGAAAGGAAAGGATTTTATGGAAAGATTATGGAAAGG
AAAGGCAAAATGGCAATTCTTTAGGAAAAGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTCATTATGGAAAAGTCAGGAAGG
TCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 260530 -- 261029
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACA
AATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTC
Found at i:260639 original size:41 final size:43
Alignment explanation
Indices: 260593--260784 Score: 151
Period size: 43 Copynumber: 4.7 Consensus size: 43
260583 CCAAAAATGG
* * * *
260593 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
260634 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
260677 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * *
260712 --TGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
260753 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
260785 TTTGATGGAA
Statistics
Matches: 117, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 5 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 52 0.44
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 260093 -- 260592
ATTAATGGAAAGGAAAGGATTTTATGGAAAGATTATGGAAAGGAAAGGCAAAATGGCAATTCTTT
AGGAAAAGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAAGGTCAAGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAACAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 260785 -- 261284
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGA
CAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTA
CTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTTTCCATCAAAAATGAGTGCTG
ACCATACCAAAATTGCAATTGTATGCCATTAGTACTGACTATACCAAAAATTGTATGCCATTAGT
GTGTCATTGAAGATCAAAGAGAAAGACAATTCCAATTTCTCCTTTCCGTCAGAGCTTGACGAGTT
CCCTTAAGAAAGCACGCACTCGCAAAGCGTAGGGCTGATTCAGAC
Found at i:260827 original size:255 final size:255
Alignment explanation
Indices: 260376--260869 Score: 970
Period size: 255 Copynumber: 1.9 Consensus size: 255
260366 CTTATCAAAA
260376 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
1 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
* *
260441 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
66 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCA
260506 AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
131 AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
260571 GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
196 GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
260631 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
1 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
260696 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCA
66 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCA
260761 AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
131 AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
260826 GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
196 GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
260870 GGTCAGGACT
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 237 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (255 bp):
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTAT
Left flanking sequence: Indices 259876 -- 260375
TTTGCACAAAGCCCTCTTTGCGAGTGCTTTGTGCAATCACGAGCTTTGCCAAAGCGAAGCGAGTG
TGCTTTGCCCTGACGCAATGACTTTCACTCATCAAAATGACATGAACTCTTTGGTCAGGGTCAGC
ATGAATGGCATACAATTGCCATTTTCCATCAAAAAGGGTCAGCACTTTTCAGGATTTGTCTGACC
TGAATCAGTGACCTTCAGTCTCATTAATGGAAAGGAAAGGATTTTATGGAAAGATTATGGAAAGG
AAAGGCAAAATGGCAATTCTTTAGGAAAAGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAAGGTCAAGACTCATTATGGAAAAGTCAGGAAGG
TCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 260870 -- 261369
GGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGA
AAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTC
ACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGC
CATTAGTACTTTCCATATGCCATTTTCCATCAAAAATGAGTGCTGACCATACCAAAATTGCAATT
GTATGCCATTAGTACTGACTATACCAAAAATTGTATGCCATTAGTGTGTCATTGAAGATCAAAGA
GAAAGACAATTCCAATTTCTCCTTTCCGTCAGAGCTTGACGAGTTCCCTTAAGAAAGCACGCACT
CGCAAAGCGTAGGGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATT
GATGGACAATTGTCATTGATCTTCATTCTTTTGTTGATGGATAAT
Found at i:260891 original size:24 final size:23
Alignment explanation
Indices: 260862--260946 Score: 124
Period size: 24 Copynumber: 3.8 Consensus size: 23
260852 GTCAAGACTG
260862 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACT-ATTCT
260886 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACT-ATTCT
260910 TCTTGAAAGGTCAGGAC---TCT
1 TCTTGAAAGGTCAGGACTATTCT
260930 T-TTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
260947 CATTGCAATT
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
19 15 0.25
20 4 0.07
24 40 0.68
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTATTCT
Left flanking sequence: Indices 260362 -- 260861
TCACCTTATCAAAACAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 260947 -- 261446
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTTTCCATCAAAAATGAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAG
TACTGACTATACCAAAAATTGTATGCCATTAGTGTGTCATTGAAGATCAAAGAGAAAGACAATTC
CAATTTCTCCTTTCCGTCAGAGCTTGACGAGTTCCCTTAAGAAAGCACGCACTCGCAAAGCGTAG
GGCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTG
TCATTGATCTTCATTCTTTTGTTGATGGATAATGGCATACAATGACAATTGTATGCCATTAGTGC
TGACCATACCAAGAATCTCAATCAGCACTCTTTTAAACTTGAAGG
Found at i:260935 original size:43 final size:45
Alignment explanation
Indices: 260862--260950 Score: 137
Period size: 43 Copynumber: 2.0 Consensus size: 45
260852 GTCAAGACTG
260862 TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGAC---TTCTTCTTGAAAGGTCAGGACTCATTCT
260910 TCTTGAAAGGTCAGGAC-TCTT-TTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTTCTTCTTGAAAGGTCAGGACTCATT
260951 GCAATTGTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
43 20 0.49
44 4 0.10
48 17 0.41
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
TCTTGAAAGGTCAGGACTTCTTCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 260362 -- 260861
TCACCTTATCAAAACAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 260951 -- 261450
GCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATG
CCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCAT
ATGCCATTTTCCATCAAAAATGAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTACT
GACTATACCAAAAATTGTATGCCATTAGTGTGTCATTGAAGATCAAAGAGAAAGACAATTCCAAT
TTCTCCTTTCCGTCAGAGCTTGACGAGTTCCCTTAAGAAAGCACGCACTCGCAAAGCGTAGGGCT
GATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCAT
TGATCTTCATTCTTTTGTTGATGGATAATGGCATACAATGACAATTGTATGCCATTAGTGCTGAC
CATACCAAGAATCTCAATCAGCACTCTTTTAAACTTGAAGGTCAT
Found at i:260936 original size:19 final size:20
Alignment explanation
Indices: 260847--260947 Score: 98
Period size: 24 Copynumber: 4.8 Consensus size: 20
260837 ACCAAAAATG
* *
260847 GAAAGGTCAAGACT-GTCTT
1 GAAAGGTCAGGACTCTTCTT
260866 GAAAGGTCAGGACTGATTCTTCTT
1 GAAAGGTCAGGAC----TCTTCTT
260890 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGA--C--TCTTCTT
260914 GAAAGGTCAGGACTCTT-TT
1 GAAAGGTCAGGACTCTTCTT
260933 GAAAGGTCAGGACTC
1 GAAAGGTCAGGACTC
260948 ATTGCAATTG
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
19 29 0.40
20 4 0.05
22 1 0.01
23 1 0.01
24 37 0.51
26 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (20 bp):
GAAAGGTCAGGACTCTTCTT
Left flanking sequence: Indices 260347 -- 260846
GTATGTCATCAGTACTCACCTTATCAAAACAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 260948 -- 261447
ATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTC
CATATGCCATTTTCCATCAAAAATGAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGT
ACTGACTATACCAAAAATTGTATGCCATTAGTGTGTCATTGAAGATCAAAGAGAAAGACAATTCC
AATTTCTCCTTTCCGTCAGAGCTTGACGAGTTCCCTTAAGAAAGCACGCACTCGCAAAGCGTAGG
GCTGATTCAGACTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGT
CATTGATCTTCATTCTTTTGTTGATGGATAATGGCATACAATGACAATTGTATGCCATTAGTGCT
GACCATACCAAGAATCTCAATCAGCACTCTTTTAAACTTGAAGGT
Found at i:261038 original size:20 final size:20
Alignment explanation
Indices: 261013--261088 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
261003 TGACAACAAA
261013 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
*
261033 ATGCCATTAGTACTCACTGTGCAAACAA
1 ATGCCATTAGTACT---T-T-C---CAT
261061 ATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTTTCCAT
261081 ATGCCATT
1 ATGCCATT
261089 TTCCATCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
20 24 0.52
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.35
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGCCATTAGTACTTTCCAT
Left flanking sequence: Indices 260513 -- 261012
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTA
GTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAA
Right flanking sequence: Indices 261089 -- 261588
TTCCATCAAAAATGAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTACTGACTATAC
CAAAAATTGTATGCCATTAGTGTGTCATTGAAGATCAAAGAGAAAGACAATTCCAATTTCTCCTT
TCCGTCAGAGCTTGACGAGTTCCCTTAAGAAAGCACGCACTCGCAAAGCGTAGGGCTGATTCAGA
CTCACTCTGATAGACTATCAGACAAGAAGGGAACTCATATTGATGGACAATTGTCATTGATCTTC
ATTCTTTTGTTGATGGATAATGGCATACAATGACAATTGTATGCCATTAGTGCTGACCATACCAA
GAATCTCAATCAGCACTCTTTTAAACTTGAAGGTCATGTCACGTCAGAACAAAGCCTTCTTTTTC
ATCTGAAATGAACTCATCAGAAAAGTGCCCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTG
ACGTTCCCTAACGCAATTCTCATTGAAAGTTGCGACGGTGCATTC
Found at i:264838 original size:5 final size:5
Alignment explanation
Indices: 264828--264858 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
264818 GGGCTTTGCT
*
264828 CGTGA CGTGA CGTGA CGTGA CATGA CGTGA C
1 CGTGA CGTGA CGTGA CGTGA CGTGA CGTGA C
264859 ATTGCTTCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (5 bp):
CGTGA
Left flanking sequence: Indices 264328 -- 264827
TGTGACTTCGACGGAGCGGAAGGAAAATGGGTCTCAGGAGCGGGAATTTGGTTGCAGACACCCGA
TGGGATGTAGTTGCCGAGAGCTTTTCGACTGACCATCCACAAACAATGTTGCAGAATACGAGGCC
CGCAGTTTTGGTCTATGCCACCGAACTCCACGTTAAAGACCGACGGGTATTTGGAGATTCGAAGC
TTGTTATCAATCAATGTCGAGGAGAGTTCAAAGTGCTCGAGCCAAAGCTCATGGAGTACCACGCC
GTTGTACAGCACCTGATTGACTCTTTCGGTCTGATCGATTTTCGGCATATACCTCGATTGCAAAA
TGAGTTGACTGATTCAATGGCCAGGGCTGGCCGCCTTTTTTGTTCCCCAACGTCATTTTGACGAG
CAATTATTCAGACAAAATGACATTCACTATGTTATGGCTTCGCTTGACGAGTTCCCTTCTTTCAG
AAAGCACTCGCAAAGCGAAGCGTGAGGGTCGCTGGGGGCTTTGCT
Right flanking sequence: Indices 264859 -- 265358
ATTGCTTCGCTTTGCGAGTTTGGCGCACTCGCTTCGCTTTCGCTTCACTCGTTCCCTCACGCTTC
GCTTTGCGAGTGCTTTGACGATACATCAACAATTTCCATCTCCTTCGGAGAGATTGGCCATCCTG
CTTGCATCATGCCGCGGAACAATCCGTGTTTGTCACTGCCTCAAATAACGTGCTCAATGGTAGAA
AGATCTCGTCGAAACTATCGACACCCCAAAGAATCGACGAGAAGCTGCAAGAATTCGACGCCAAG
CAACTCGACCTCGATGACAATCGACTTATGCGTCGATCTGAGGACGACTGCTGCAATGTGTCGAA
AAGATCGGAGCCACTAAAGCGTTGCAATAGGCTCATGCCGGCGCATGTGGTGAGCACCAAGGGGG
ACTTCAGCTATCGCAGCGTATAATGAATGCGTGAAGGAAAAGGGCGATTCGTTCCAGTTTGAAAG
CTAAAGCATGTCGAAGATGTAAAGAACATGGGTTCCATGCGCCGC
Found at i:268591 original size:32 final size:32
Alignment explanation
Indices: 268545--268607 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
268535 CATCTCATTG
268545 CAATTTGTGATATGGTCAGCACT-AATGGCATA
1 CAATTTGTGATATGGTCAGCA-TGAATGGCATA
268577 CAATTTGTTG-TATGGTCAGCATGAATGGCAT
1 CAATTTG-TGATATGGTCAGCATGAATGGCAT
268608 CTCATTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 1 0.03
32 26 0.90
33 2 0.07
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (32 bp):
CAATTTGTGATATGGTCAGCATGAATGGCATA
Left flanking sequence: Indices 268045 -- 268544
TTGAACAATGGGTTATCCATAAAATAGATAGATCAAGAAAGCTGTTCCCTGAAAAAAGACTTGTC
GGAAGGAGCCGGTTGGCTTGGTCCGACCAAGAAAGGCATGGGAGTGGAGTTCCGAGGCTCCAGAA
TCGGGATGGGTCTTGCGTTCCAGAGAGAGATAGGAAAAGACACTCTCGGACCACGCGAAACCCTT
CTTTTTGTTCGTTCTTTATCTATGACAAAAGAAAAGATCTTTCCTTTGTACCCAAAAAGCACTCG
CAACTTTGAATGGCTGAAGGTCATGTCACGTCAGAGCAAAGCCTTCTTGTTCAGCTTTTTGTCAG
AGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGAC
CTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCAT
ACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTG
Right flanking sequence: Indices 268608 -- 269107
CTCATTGCAATTATGGACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTG
GTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTT
TTTTTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTC
CTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
Found at i:268730 original size:28 final size:28
Alignment explanation
Indices: 268689--268828 Score: 228
Period size: 28 Copynumber: 5.0 Consensus size: 28
268679 TGAGTACTCA
* *
268689 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
268717 TGTTTGTACAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
268745 TGTTTGTACAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
268773 TGTTTGTACAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
* *
268801 T-TTTTTTCAAGTGAGTACTAATGGCATT
1 TGTTTGTAC-AGTGAGTACTAATGGCATT
268829 GAATTGCAAT
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
27 5 0.05
28 102 0.95
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.41
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 268189 -- 268688
GCGTTCCAGAGAGAGATAGGAAAAGACACTCTCGGACCACGCGAAACCCTTCTTTTTGTTCGTTC
TTTATCTATGACAAAAGAAAAGATCTTTCCTTTGTACCCAAAAAGCACTCGCAACTTTGAATGGC
TGAAGGTCATGTCACGTCAGAGCAAAGCCTTCTTGTTCAGCTTTTTGTCAGAGTCAGCACTAATG
GCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACC
TTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCC
AAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACA
ATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGACACTAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 268829 -- 269328
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCA
GAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGA
CTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATG
Found at i:268864 original size:24 final size:24
Alignment explanation
Indices: 268836--268881 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
268826 ATTGAATTGC
268836 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
268860 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
268882 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 268336 -- 268835
CAGAGCAAAGCCTTCTTGTTCAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTT
TGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGA
CTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATA
ATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAG
CATGAATGGCATCTCATTGCAATTATGGACACTAATGGCATACAATTGCCATTGGGAGCACTAAT
GGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTAC
TAATGGCATTTTTTTTTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 268882 -- 269381
CAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCA
GGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGT
Found at i:268891 original size:19 final size:19
Alignment explanation
Indices: 268864--268933 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
268854 AAGAAGAATG
268864 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
268883 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
268902 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
268921 AGTCTTGACCTTT
1 AGTCCTGACCTTT
268934 TTGGTAAGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 32 0.80
20 1 0.03
21 3 0.08
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 268364 -- 268863
TGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTG
TCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCT
GACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATG
GTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGG
ACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTTTTTTTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 268934 -- 269433
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
Found at i:268906 original size:38 final size:38
Alignment explanation
Indices: 268855--268990 Score: 166
Period size: 38 Copynumber: 3.4 Consensus size: 38
268845 TGACCTTTCA
*
268855 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
268893 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
* * **
268931 TTTTTGGTAAG-GTCAGTCCTGACCTTGAAAGACAGTCTTGACC
1 -----AG-AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
268974 AGAAGAATCAGTCCTGA
1 AGAAGAATCAGTCCTGA
268991 TCAGATAGTC
Statistics
Matches: 84, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
37 3 0.04
38 48 0.57
43 30 0.36
44 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (38 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 268355 -- 268854
TCAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGT
CAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTC
ATTAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATT
TGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTG
CAATTATGGACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGT
GAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTTTTTTTCA
AGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCA
Right flanking sequence: Indices 268991 -- 269490
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGG
TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
Found at i:268963 original size:43 final size:42
Alignment explanation
Indices: 268900--269093 Score: 167
Period size: 43 Copynumber: 4.8 Consensus size: 42
268890 ACCAGAAGAA
**
268900 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
268943 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
268981 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
269019 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
269062 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
269094 CCATTTTTGG
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 21 0.17
39 3 0.02
41 21 0.17
43 60 0.50
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 268400 -- 268899
TTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGG
ACTAATGAGAATTGTATGTCATTAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGAT
AATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTGTTGTATGGTCA
GCATGAATGGCATCTCATTGCAATTATGGACACTAATGGCATACAATTGCCATTGGGAGCACTAA
TGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTA
CAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTTTTTTTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 269094 -- 269593
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTG
AAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTA
AGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTT
Found at i:268972 original size:19 final size:19
Alignment explanation
Indices: 268864--268973 Score: 53
Period size: 19 Copynumber: 5.5 Consensus size: 19
268854 AAGAAGAATG
**
268864 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTGAAAGAC
* *
268883 AGTCTTGACC-AG-AAGAATC
1 AGTCCTGACCTTGAAAG-A-C
**
268902 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTGAAAGAC
* * *
268921 AGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACC---TT-G-AAAGAC
268945 AGTCCTGACCTTGAAAGAC
1 AGTCCTGACCTTGAAAGAC
*
268964 AGTCTTGACC
1 AGTCCTGACC
268974 AGAAGAATCA
Statistics
Matches: 67, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 42 0.63
20 2 0.03
21 5 0.07
22 2 0.03
24 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTGAAAGAC
Left flanking sequence: Indices 268364 -- 268863
TGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTG
TCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCT
GACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATG
GTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGG
ACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTTTTTTTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 268974 -- 269473
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTA
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCC
TGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGA
Found at i:268980 original size:81 final size:76
Alignment explanation
Indices: 268864--269049 Score: 273
Period size: 76 Copynumber: 2.4 Consensus size: 76
268854 AAGAAGAATG
**
268864 AGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA----TC-AGACAGTCTTGA
268929 CCTTTTTGGTAAGGTC
61 CCTTTTTGGTAAGGTC
* *
268945 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTT
*
269010 TTGGTAAGGTT
66 TTGGTAAGGTC
*
269021 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
269050 TTTTTGATAA
Statistics
Matches: 99, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
76 53 0.54
77 2 0.02
81 44 0.44
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (76 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTT
TTGGTAAGGTC
Left flanking sequence: Indices 268364 -- 268863
TGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTG
TCTGACCTGAATCAGTGACCTTATGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTGCT
GACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATG
GTCAGCACTAATGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGG
ACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTTTTTTTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 269050 -- 269549
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
Found at i:269218 original size:43 final size:42
Alignment explanation
Indices: 269157--269326 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
269147 TTCCATCAAA
**
269157 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
269200 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * * *
269238 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTCAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
269276 AGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
269319 AGTACTGA
1 AGTCCTGA
269327 TGACATACAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 12 0.13
35 1 0.01
37 3 0.03
38 21 0.22
39 2 0.02
41 1 0.01
42 2 0.02
43 53 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 268657 -- 269156
TAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATTTTTTTTTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 269327 -- 269826
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAA
TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTT
Found at i:269461 original size:16 final size:16
Alignment explanation
Indices: 269437--269467 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
269427 CATTCTCATT
269437 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
269453 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
269468 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 268937 -- 269436
GTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 269468 -- 269967
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCT
Found at i:269485 original size:24 final size:24
Alignment explanation
Indices: 269453--269537 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
269443 GACCTTTCAG
*
269453 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
269477 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
*
269496 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
269520 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
269538 CAGTCTTGAC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.58
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 268953 -- 269452
CCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAG
TCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAG
TCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 269538 -- 270037
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
Found at i:269504 original size:19 final size:19
Alignment explanation
Indices: 269437--269551 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
269427 CATTCTCATT
269437 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
269453 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
269477 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
269496 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
269520 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
269539 AGTCTTGACCTTT
1 AGTCCTGACCTTT
269552 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 13 0.16
19 27 0.33
20 4 0.05
21 6 0.07
22 3 0.04
23 1 0.01
24 27 0.33
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 268937 -- 269436
GTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 269552 -- 270051
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
Found at i:269510 original size:43 final size:43
Alignment explanation
Indices: 269437--269551 Score: 209
Period size: 43 Copynumber: 2.7 Consensus size: 43
269427 CATTCTCATT
269437 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
269477 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
269520 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
269552 TTGGTAAGGT
Statistics
Matches: 72, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
43 56 0.78
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 268937 -- 269436
GTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 269552 -- 270051
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
Found at i:269567 original size:43 final size:43
Alignment explanation
Indices: 269437--269647 Score: 202
Period size: 43 Copynumber: 5.0 Consensus size: 43
269427 CATTCTCATT
*** *
269437 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*** *
269477 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
269520 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *
269563 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *
269606 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
269648 GAGTACTAAT
Statistics
Matches: 157, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
40 14 0.09
41 2 0.01
42 2 0.01
43 136 0.87
44 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 268937 -- 269436
GTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 269648 -- 270147
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:269590 original size:19 final size:19
Alignment explanation
Indices: 269563--269633 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
269553 TGGTAAGGTT
269563 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
269582 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
269606 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
269625 AGTCTTGAC
1 AGTCCTGAC
269634 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 269063 -- 269562
CAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 269634 -- 270133
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
Found at i:269878 original size:43 final size:42
Alignment explanation
Indices: 269831--269988 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
269821 ACCTTTCAAG
*
269831 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * *** * * *
269874 ACAGTATGGACCTTTCAAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
269914 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
269955 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
269989 TGACATACAA
Statistics
Matches: 85, Mismatches: 23, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
38 21 0.25
39 3 0.04
40 4 0.05
41 3 0.04
42 3 0.04
43 51 0.60
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 269331 -- 269830
ATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACA
TACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 269989 -- 270488
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAG
TCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGT
CCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTT
TGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTG
Found at i:270112 original size:24 final size:19
Alignment explanation
Indices: 270066--270141 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
270056 CTTCCATAAT
270066 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
270085 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
270108 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
270128 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
270142 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 269566 -- 270065
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCA
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 270142 -- 270641
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAG
TACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTT
GATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACA
ATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAG
Found at i:270155 original size:43 final size:42
Alignment explanation
Indices: 270065--270279 Score: 146
Period size: 43 Copynumber: 5.2 Consensus size: 42
270055 CCTTCCATAA
*** *
270065 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
270108 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * * * *
270151 TCAGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
270189 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
270227 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* *
270270 TGAGTACTGA
1 TCAGTCCTGA
270280 TGACATACAA
Statistics
Matches: 133, Mismatches: 25, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
33 10 0.08
37 3 0.02
38 21 0.16
39 3 0.02
41 1 0.01
42 2 0.02
43 90 0.68
44 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 269565 -- 270064
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTC
AAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 270280 -- 270779
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTT
TGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCAT
GAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAG
TCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
Found at i:270233 original size:76 final size:78
Alignment explanation
Indices: 270099--270257 Score: 223
Period size: 76 Copynumber: 2.0 Consensus size: 78
270089 CTTGACCTTT
270099 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
*
270164 TGAAATACAGTATTGA
63 TGAAAGACAGTATTGA
* * * *
270180 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
270243 AAGACAGTCTTGA
66 AAGACAGTATTGA
270256 CC
1 CC
270258 TTTTTGATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
76 51 0.71
77 2 0.03
81 19 0.26
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTATTGA
Left flanking sequence: Indices 269599 -- 270098
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 270258 -- 270757
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCT
TTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTG
TTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGT
GAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
Found at i:270347 original size:64 final size:62
Alignment explanation
Indices: 270229--270429 Score: 233
Period size: 64 Copynumber: 3.1 Consensus size: 62
270219 TGGTAAGGTT
* * *
270229 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACTTT-AAA-ACAGTCTTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
* *
270293 AGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGA-CTTT-AAAACAGTCTTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
* *** * *
270357 AGTCTTGTA-TGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTG-ACT-TTAA-AACAGTCTTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
270421 AGTCTTGAC
1 AGTCTTGAC
270430 CGACTCACCT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
63 4 0.03
64 106 0.90
65 8 0.07
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.33
Consensus pattern (62 bp):
AGTCTTGACTTTAAAACAGTCTTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 269729 -- 270228
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
Right flanking sequence: Indices 270430 -- 270929
CGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAG
GGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATC
ATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTG
TCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTCATT
Found at i:270517 original size:28 final size:29
Alignment explanation
Indices: 270474--270593 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
270464 GTTGATGGAA
270474 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
270502 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
270530 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
270558 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
270586 AATGGCAT
1 AATGGCAT
270594 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 269974 -- 270473
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
TACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
TATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 270594 -- 271093
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAGCTCA
TACTTTTCATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCTTCAA
TGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTATGGAA
AATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGA
Found at i:270711 original size:43 final size:43
Alignment explanation
Indices: 270663--270744 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
270653 CTGATCTTTC
* * * *
270663 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
270706 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
270745 TTTCCTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 270163 -- 270662
GTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGA
GTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAG
TCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 270745 -- 271244
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAA
TAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTCATTGATTTCAGGA
AGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACACTAATGGCATACAA
TTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCATCTTTTTGGTATAG
TGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCA
ATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Found at i:270806 original size:19 final size:16
Alignment explanation
Indices: 270765--270795 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
270755 CATTCTCATT
270765 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
270781 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
270796 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 270265 -- 270764
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGT
ATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTA
TGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 270796 -- 271295
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTT
CATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACA
CTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCA
TCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTAT
TAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTA
Found at i:270831 original size:75 final size:77
Alignment explanation
Indices: 270746--270887 Score: 236
Period size: 75 Copynumber: 1.9 Consensus size: 77
270736 GTTCTGACTT
*
270746 TTCCTCAATCATTCTCATTAGTCCTGACCTTT-C-AGAGTCCTGACCTTTCAA-AAGGGTCCTGT
1 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAAGAGTCCTGACCTTTCAATAA-AGTCCTGT
270808 CCTTCCATAATCA
65 CCTTCCATAATCA
270821 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTGT
1 TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCA-AGAGTCCTGACCTTTCAATAAAGTCCTGT
270886 CC
65 CC
270888 ATCATTTCCT
Statistics
Matches: 62, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
75 32 0.52
76 1 0.02
78 27 0.44
79 2 0.03
ACGTcount: A:0.23, C:0.31, G:0.12, T:0.35
Consensus pattern (77 bp):
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAAGAGTCCTGACCTTTCAATAAAGTCCTGTC
CTTCCATAATCA
Left flanking sequence: Indices 270246 -- 270745
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTG
AGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGACTCACCTG
TTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGAC
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTT
Right flanking sequence: Indices 270888 -- 271387
ATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTCATTGATTTCAGGAAGGGAACTCATCA
AAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGT
CAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGT
TGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCT
TTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTT
Found at i:270881 original size:19 final size:19
Alignment explanation
Indices: 270840--270884 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
270830 CATTCTCATT
* *
270840 AGTCCTGACCTTTCCAGAG
1 AGTCCTGACCTTTCAAGAA
*
270859 AGTCCTGACCTTTCAATAA
1 AGTCCTGACCTTTCAAGAA
270878 AGTCCTG
1 AGTCCTG
270885 TCCATCATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAA
Left flanking sequence: Indices 270340 -- 270839
CTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCGACTCACCTGTTTTGGTATGGTGAGTACTCATTGTTGAT
GGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGG
CATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATT
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAA
GACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTC
AAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 270885 -- 271384
TCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTCATTGATTTCAGGAAGGGAACTCA
TCAAAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTAT
GGTCAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCA
TGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTC
ATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGA
CCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACC
Found at i:271122 original size:28 final size:28
Alignment explanation
Indices: 271090--271190 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
271080 TGTTGGTATG
*
271090 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
271118 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
271146 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
271174 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
271191 ACAATTGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 270590 -- 271089
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
CTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACC
TTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAG
CTCATACTTTTCATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCT
TCAATGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTAT
GGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 271191 -- 271690
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTA
CTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
GAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
Found at i:271239 original size:24 final size:24
Alignment explanation
Indices: 271212--271330 Score: 118
Period size: 24 Copynumber: 5.4 Consensus size: 24
271202 GAGTCTTCAT
271212 CTTTCAAGAAGAATCAGTCCTGAC
1 CTTTCAAGAAGAATCAGTCCTGAC
*
271236 CTTTCAAGACAG--T-A-T--TAAC
1 CTTTCAAGA-AGAATCAGTCCTGAC
271255 CTTTCAAGAAGAATCAGTCCTGAC
1 CTTTCAAGAAGAATCAGTCCTGAC
*
271279 CTTTCAAGACAG--T-A-T--TAAC
1 CTTTCAAGA-AGAATCAGTCCTGAC
271298 CTTTCAAGAAGAATCAGTCCTGAC
1 CTTTCAAGAAGAATCAGTCCTGAC
271322 CTTTCAAGA
1 CTTTCAAGA
271331 CAGTATTGAC
Statistics
Matches: 77, Mismatches: 4, Indels: 28
0.71 0.04 0.26
Matches are distributed among these distances:
18 4 0.05
19 24 0.31
20 2 0.03
21 4 0.05
22 4 0.05
23 2 0.03
24 33 0.43
25 4 0.05
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (24 bp):
CTTTCAAGAAGAATCAGTCCTGAC
Left flanking sequence: Indices 270712 -- 271211
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAG
TTTGTGAGCTCATACTTTTCATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGT
CTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTT
CTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAAT
GGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
Right flanking sequence: Indices 271331 -- 271830
CAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGT
CCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
Found at i:271256 original size:19 final size:19
Alignment explanation
Indices: 271232--271347 Score: 92
Period size: 19 Copynumber: 5.6 Consensus size: 19
271222 GAATCAGTCC
271232 TGACCTTTCAAGACAGTAT
1 TGACCTTTCAAGACAGTAT
*
271251 TAACCTTTCAAGA-AGAATCAGT
1 TGACCTTTCAAGACAG--T-A-T
271273 CCTGACCTTTCAAGACAGTAT
1 --TGACCTTTCAAGACAGTAT
*
271294 TAACCTTTCAAGA-AGAATCAGT
1 TGACCTTTCAAGACAG--T-A-T
271316 CCTGACCTTTCAAGACAGTAT
1 --TGACCTTTCAAGACAGTAT
271337 TGACCTTTCAA
1 TGACCTTTCAA
271348 AAAAGGTCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 28
0.71 0.04 0.25
Matches are distributed among these distances:
18 4 0.05
19 35 0.44
20 2 0.03
21 4 0.05
22 4 0.05
23 2 0.03
24 24 0.30
25 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (19 bp):
TGACCTTTCAAGACAGTAT
Left flanking sequence: Indices 270732 -- 271231
GTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAA
AAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGT
CCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTC
ATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACAC
TAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCAT
CTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCC
Right flanking sequence: Indices 271348 -- 271847
AAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:271377 original size:86 final size:86
Alignment explanation
Indices: 271212--271387 Score: 259
Period size: 86 Copynumber: 2.0 Consensus size: 86
271202 GAGTCTTCAT
271212 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTG
1 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTG
*
271277 ACCTTTCAAGACAGTATTAAC
66 ACCTTTAAAGACAGTATTAAC
*
271298 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAA-AA-AAGGTCAGTCC
1 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAA--TCAGTCC
* * *
271361 TGA-CTTTGAAATACAGTCTTGAC
64 TGACCTTT-AAAGACAGTATTAAC
271384 CTTT
1 CTTT
271388 TTGATAAGGT
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
84 2 0.02
85 6 0.07
86 74 0.90
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (86 bp):
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTG
ACCTTTAAAGACAGTATTAAC
Left flanking sequence: Indices 270712 -- 271211
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAG
TTTGTGAGCTCATACTTTTCATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGT
CTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTT
CTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAAT
GGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
Right flanking sequence: Indices 271388 -- 271887
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
Found at i:271387 original size:43 final size:43
Alignment explanation
Indices: 271212--271364 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
271202 GAGTCTTCAT
271212 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
1 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
271255 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
1 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
*
271298 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGAC
1 CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
271341 CTTTCAA-AA-AAGGTCAGTCCTGAC
1 CTTTCAAGAAGAA--TCAGTCCTGAC
271365 TTTGAAATAC
Statistics
Matches: 107, Mismatches: 1, Indels: 4
0.96 0.01 0.04
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 103 0.96
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAAC
Left flanking sequence: Indices 270712 -- 271211
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCCAGAGAGTCCTGACCTTTCAATAAAGTCCTGTCCATCATTTCCTTTCCATGAG
TTTGTGAGCTCATACTTTTCATTGATTTCAGGAAGGGAACTCATCAAAGTTTGATGGACAATTGT
CTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGTCAGCACTAATGGCATCTTT
CTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAAT
GGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCAT
Right flanking sequence: Indices 271365 -- 271864
TTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTG
ACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
Found at i:271496 original size:19 final size:16
Alignment explanation
Indices: 271453--271500 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 16
271443 CATTCTCATT
271453 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
271469 AGTCTTGACCTTTCAAG
1 AGTCCTGACCTTTC-AG
271486 ACAGTCCTGACCTTT
1 --AGTCCTGACCTTT
271501 TTGGTATGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 13 0.48
17 2 0.07
19 12 0.44
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 270953 -- 271452
AAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACACTAATGGCATACAATTGGTTGTATGGT
CAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCATCTTTTTGGTATAGTGAGTACTCATGT
TGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCT
TTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 271501 -- 272000
TTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAG
Found at i:271571 original size:113 final size:113
Alignment explanation
Indices: 271373--271599 Score: 427
Period size: 113 Copynumber: 2.0 Consensus size: 113
271363 ACTTTGAAAT
*
271373 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
1 ACAGTCCTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
271438 TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
66 TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
* *
271486 ACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
1 ACAGTCCTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
271551 TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
66 TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
271599 A
1 A
271600 AGAATCAGTC
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (113 bp):
ACAGTCCTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
Left flanking sequence: Indices 270873 -- 271372
AATAAAGTCCTGTCCATCATTTCCTTTCCATGAGTTTGTGAGCTCATACTTTTCATTGATTTCAG
GAAGGGAACTCATCAAAGTTTGATGGACAATTGTCTTTCTCTTCAATGACACACTAATGGCATAC
AATTGGTTGTATGGTCAGCACTAATGGCATCTTTCTTGGTATGGAAAATGGCATCTTTTTGGTAT
AGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTG
CAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAAT
Right flanking sequence: Indices 271600 -- 272099
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
AAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTT
GAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
Found at i:271590 original size:16 final size:16
Alignment explanation
Indices: 271566--271596 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
271556 CATTCTCATT
271566 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
271582 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
271597 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 271066 -- 271565
ATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAAT
TGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 271597 -- 272096
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
Found at i:271651 original size:43 final size:43
Alignment explanation
Indices: 271566--271690 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
271556 CATTCTCATT
*** *
271566 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
271606 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *
271649 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
271691 GAGTACTAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 52 0.71
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 271066 -- 271565
ATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAAT
TGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTT
CAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 271691 -- 272190
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Found at i:271789 original size:19 final size:19
Alignment explanation
Indices: 271762--271836 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
271752 CAGAAGAATG
271762 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
271781 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
271805 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
271824 AGTCTTGACCTTT
1 AGTCCTGACCTTT
271837 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 271262 -- 271761
GAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 271837 -- 272336
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
Found at i:271790 original size:43 final size:43
Alignment explanation
Indices: 271737--272039 Score: 242
Period size: 43 Copynumber: 7.3 Consensus size: 43
271727 CTTCCATAAT
* * *
271737 CAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
271780 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*** * ** *
271823 CAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGA
271866 CAGTCTTGA-C---C-AGAAGAATCAGTCCTGA----TC-AGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
* * *** * * *
271899 TAGTCTTGATCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAAGA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTT-CAAGA
** * * *
271942 CAGTCTTGACCTTTTTGATAAG-GTCAGTACTGA--TTTCAAGA
1 CAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*
271983 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
272026 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
272040 TTGGTAAGGT
Statistics
Matches: 207, Mismatches: 36, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
33 10 0.05
34 1 0.00
37 3 0.01
38 21 0.10
39 3 0.01
40 6 0.03
41 25 0.12
42 4 0.02
43 127 0.61
44 7 0.03
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 271237 -- 271736
TTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTT
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTT
TGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGAC
CTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 272040 -- 272539
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
Found at i:271819 original size:24 final size:24
Alignment explanation
Indices: 271734--271822 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
271724 GTCCTTCCAT
*
271734 AATCAGTCCTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
271758 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
271779 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
271801 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
271823 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 271234 -- 271733
ACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGA
CTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCT
GACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 271823 -- 272322
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGT
CCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCA
Found at i:271928 original size:76 final size:78
Alignment explanation
Indices: 271762--271952 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
271752 CAGAAGAATG
**
271762 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-C---C-AGAAGAATCAGTCCTGA-C--TCAAGACAGT
271827 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
271848 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
271911 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
271924 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
271953 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 17 0.18
82 1 0.01
85 1 0.01
86 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 271262 -- 271761
GAAGAATCAGTCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTATTGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 271953 -- 272452
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGT
CCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
Found at i:271999 original size:19 final size:19
Alignment explanation
Indices: 271975--272039 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
271965 TCAGTACTGA
271975 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
271994 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
272018 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
272037 TTT
1 TTT
272040 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 271475 -- 271974
GACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 272040 -- 272539
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
Found at i:272053 original size:43 final size:43
Alignment explanation
Indices: 271900--272177 Score: 242
Period size: 43 Copynumber: 6.7 Consensus size: 43
271890 CTGATCAGAT
* *
271900 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
* * *
271943 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGAC
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
*** * ** *
271984 AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTT-CAAGAC
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTTTGAAAGAC
*
272027 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATAC
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
* * * *
272070 AGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--CAGAT
1 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTTGAAAGAC
* *
272103 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
* * *
272146 AGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
272178 TGACATACAA
Statistics
Matches: 184, Mismatches: 36, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
33 11 0.06
35 1 0.01
37 3 0.02
38 21 0.11
39 3 0.02
41 30 0.16
42 7 0.04
43 108 0.59
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (43 bp):
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 271400 -- 271899
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTT
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 272178 -- 272677
TGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
TAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCA
Found at i:272121 original size:203 final size:203
Alignment explanation
Indices: 271772--272178 Score: 787
Period size: 203 Copynumber: 2.0 Consensus size: 203
271762 AGTCCTGACC
*
271772 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
271837 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
271902 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
271967 AGTACTGA
196 AGTACTGA
271975 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
272040 TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
*
272105 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
272170 AGTACTGA
196 AGTACTGA
272178 T
1 T
272179 GACATACAAA
Statistics
Matches: 201, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 201 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 271272 -- 271771
TCCTGACCTTTCAAGACAGTATTAACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTAT
TGACCTTTCAAAAAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCA
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 272179 -- 272678
GACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA
GACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGT
CCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
TGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAG
Found at i:272135 original size:76 final size:76
Alignment explanation
Indices: 271943--272478 Score: 339
Period size: 76 Copynumber: 6.7 Consensus size: 76
271933 TTTGAAAGAC
* * * * *
271943 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGACAGTCTTGACCTTTCAAGAAAAA
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA-C---C-AGAAGAA
*
272006 TCAGTCCTGACCTTTCAAGAC
61 TCAGTCCTGA----TC-AGAT
* *
272027 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGT
272092 CCTGATCAGAT
66 CCTGATCAGAT
* *
272103 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA-AG
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC----AGA-AGA-
* * * * *
272167 GTGAGTACTGATGACAT
60 ATCAGTCCTGATCAGAT
**** * * * ** ** *
272184 ACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGA-CAT
1 AGTCTTGA-CCTT-TTTGGTAAGGTTAGTCCTGA-C--TTT-G-AAAGACAGT-CT--TGACCAG
* * * * *
272248 ACA-AATGAGTCTTGACCGGAA
56 A-AGAATCAGTCCTGATCAGAT
* *** * * *
272269 AGTCCTGACCTTTCAAG-AAGAATGAGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCA
1 AGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCA
*
272332 GTCCTGACCTTTCAAGAC
64 GTCCTGA----TC-AGAT
*
272350 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGT
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGT
272415 CCTGATCAGAT
66 CCTGATCAGAT
*
272426 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
272479 TTTTTGATAA
Statistics
Matches: 357, Mismatches: 67, Indels: 64
0.73 0.14 0.13
Matches are distributed among these distances:
75 4 0.01
76 120 0.34
77 6 0.02
78 4 0.01
80 7 0.02
81 92 0.26
82 11 0.03
83 32 0.09
84 34 0.10
85 17 0.05
86 18 0.05
87 1 0.00
88 5 0.01
89 2 0.01
90 1 0.00
91 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (76 bp):
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGAT
Left flanking sequence: Indices 271443 -- 271942
CATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
Right flanking sequence: Indices 272479 -- 272978
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTG
GTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTTG
GTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTA
Found at i:272320 original size:19 final size:19
Alignment explanation
Indices: 272293--272362 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
272283 AAGAAGAATG
272293 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
272312 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
272331 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
272350 AGTCTTGACCTTT
1 AGTCCTGACCTTT
272363 TTGGTAAGGT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 32 0.80
20 1 0.03
21 3 0.08
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 271793 -- 272292
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACA
TACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 272363 -- 272862
TTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCT
Found at i:272326 original size:38 final size:38
Alignment explanation
Indices: 272284--272359 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
272274 TGACCTTTCA
*
272284 AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
272322 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
272360 TTTTTGGTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (38 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 271784 -- 272283
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCA
Right flanking sequence: Indices 272360 -- 272859
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGA
Found at i:272392 original size:43 final size:41
Alignment explanation
Indices: 272345--272522 Score: 149
Period size: 43 Copynumber: 4.4 Consensus size: 41
272335 CTGACCTTTC
*
272345 AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-T-TGA
* *
272388 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA-T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGATTGA
* * * *
272421 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA--TTGA
* * **
272464 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGATTGA
272505 AAGACAGTCTTGACCTTT
1 AAGACAGTCTTGACCTTT
272523 CCATTTTTGG
Statistics
Matches: 106, Mismatches: 17, Indels: 26
0.71 0.11 0.17
Matches are distributed among these distances:
33 12 0.11
35 1 0.01
37 3 0.03
38 20 0.19
39 3 0.03
41 21 0.20
43 46 0.43
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (41 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGATTGA
Left flanking sequence: Indices 271845 -- 272344
GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
Right flanking sequence: Indices 272523 -- 273022
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAA
GGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGT
CAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGT
ACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATT
Found at i:272650 original size:43 final size:43
Alignment explanation
Indices: 272586--272755 Score: 139
Period size: 43 Copynumber: 4.2 Consensus size: 43
272576 TTCCATCAAA
*
272586 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
272629 AGTCCTGACTTTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
272667 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
272705 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
272748 AGTACTGA
1 AGTCCTGA
272756 TGACATACAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 3 0.03
38 22 0.23
39 3 0.03
41 1 0.01
42 4 0.04
43 52 0.54
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 272086 -- 272585
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCT
GACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 272756 -- 273255
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACTCAT
TGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTA
CTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGAT
CTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTG
ACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCAT
Found at i:272823 original size:64 final size:64
Alignment explanation
Indices: 272705--272839 Score: 200
Period size: 64 Copynumber: 2.1 Consensus size: 64
272695 TGGTAAGGTC
* * *
272705 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
1 AGTCTTGACTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
* * *
272769 AGTCTTGACCTTTCAAA-ACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATG
1 AGTCTTGA-CTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
272833 AGTCTTG
1 AGTCTTG
272840 TATGGTAAGG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 57 0.89
65 7 0.11
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (64 bp):
AGTCTTGACTTTCAAAGACAGTCTTCACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 272205 -- 272704
AGGTGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCGGAAA
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
Right flanking sequence: Indices 272840 -- 273339
TATGGTAAGGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCT
GACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGAT
CTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTG
ACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTG
TCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTT
TTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTC
Found at i:272940 original size:28 final size:29
Alignment explanation
Indices: 272897--273016 Score: 212
Period size: 28 Copynumber: 4.3 Consensus size: 29
272887 GTTGATGGAA
272897 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
272925 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
272953 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
272981 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
273009 AATGGCAT
1 AATGGCAT
273017 ACAATTGTCA
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.04
28 81 0.91
29 4 0.04
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 272397 -- 272896
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTAAGGTG
AGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 273017 -- 273516
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTGGTCAGACAAATCCTGAAATTGACCCTGACCAGAAAGGAAAGGT
TGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCT
AGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGA
Found at i:273134 original size:43 final size:43
Alignment explanation
Indices: 273086--273169 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
273076 CTGATCTTTC
* * * *
273086 AAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
273129 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
273170 TCCTCAATCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 272586 -- 273085
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
AAGGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 273170 -- 273669
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGT
AAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGG
TCAGACAAATCCTGAAATTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGA
CAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCA
GGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGA
Found at i:273229 original size:19 final size:16
Alignment explanation
Indices: 273188--273218 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
273178 CATTCTCATT
273188 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
273204 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
273219 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 272688 -- 273187
ATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 273219 -- 273718
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTGGTCAGACAAATCCTGAAATTGACCCTGACCAGAAAGGAAAGGTTGTCATT
GTATGCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGG
TGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGA
CCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAA
GACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGA
Found at i:273349 original size:73 final size:70
Alignment explanation
Indices: 273134--273362 Score: 273
Period size: 73 Copynumber: 3.2 Consensus size: 70
273124 TTTGAAAGAC
*
273134 AGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
1 AGTCCTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
273199 TTCAG
66 TTCAG
* * ** * **
273204 AGTCCTGACC--TTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTC
1 AGTCCTGACCTTTTTGATAA-GGT-GAGTTCTGAC-T--T--TTCCTCAATCATTCTCATTAGTC
273267 CTGACCTTTCCAGAG
59 CTGACCTTT-C--AG
*
273282 AGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
1 AGTCCTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
273347 TTCAG
66 TTCAG
273352 AGTCCTGACCT
1 AGTCCTGACCT
273363 GGTCAGACAA
Statistics
Matches: 131, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
68 6 0.05
69 3 0.02
70 27 0.21
71 1 0.01
72 1 0.01
73 33 0.25
75 33 0.25
76 1 0.01
77 1 0.01
78 17 0.13
79 3 0.02
80 5 0.04
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.38
Consensus pattern (70 bp):
AGTCCTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAG
Left flanking sequence: Indices 272634 -- 273133
TGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTTTTTGGTATGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTAAGGTGAGTCCTGACCTGTTTTGGTATGGTGAGTACTCATTGTTGATG
GAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGC
ATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTG
TCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAG
ACAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGAC
Right flanking sequence: Indices 273363 -- 273862
GGTCAGACAAATCCTGAAATTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAA
GACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAG
ATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACA
Found at i:273571 original size:16 final size:16
Alignment explanation
Indices: 273550--273580 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
273540 AGGACCCTTT
273550 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
273566 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
273581 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 273050 -- 273549
TCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCA
TTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTT
CTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAAT
CCTGAAATTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAGAAAT
TGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 273581 -- 274080
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGAT
Found at i:273647 original size:43 final size:42
Alignment explanation
Indices: 273599--273696 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
273589 TGATTGAGGA
* * * *
273599 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
273642 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
273684 AAAGATCAGAACT
1 AAAG-TCAGAACT
273697 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 273099 -- 273598
TCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCT
GACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCT
GTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTT
TTTGGTAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTG
ACCTGGTCAGACAAATCCTGAAATTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGG
AAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 273697 -- 274196
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAAACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACT
CACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
Found at i:273775 original size:28 final size:28
Alignment explanation
Indices: 273752--273871 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
273742 TGACAATTGT
273752 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
273780 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
273808 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
273836 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
273864 ATGCCATT
1 ATGCCATT
273872 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 273252 -- 273751
TCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTTGGTAAGGTGAGTTCTGACTT
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTGGTCAGACAAATCCTGAAA
TTGACCCTGACCAGAAAGGAAAGGTTGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATT
CTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 273872 -- 274371
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGGACTCACCTTACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
Found at i:274011 original size:64 final size:64
Alignment explanation
Indices: 273929--274063 Score: 200
Period size: 64 Copynumber: 2.1 Consensus size: 64
273919 CCTTACCATA
* *
273929 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGT-TTTGAAAGGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAA-GT
* * *
273993 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAGT
*
274057 CAGGACT
1 CAAGACT
274064 GACCTTACCA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 58 0.91
65 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCTTTCAAAGT
Left flanking sequence: Indices 273429 -- 273928
ACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGA
AAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTC
AGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGA
TCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAA
TGAGTACTCACCATACCAAAACAGGTCAGGACTCACCTTACCATA
Right flanking sequence: Indices 274064 -- 274563
GACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTT
Found at i:274078 original size:43 final size:42
Alignment explanation
Indices: 274013--274439 Score: 166
Period size: 43 Copynumber: 10.2 Consensus size: 42
274003 TTGTATGTCA
* * *
274013 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
274056 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
274094 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCAAAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
274132 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** * * * * * *
274175 TCAGGACTGA--TTATGGAAGGACAGGACCAATTGCAATTGTATGC-CA-
1 TCAGGACTGACCTTA-CCAA--AAAGG-TCAA--G--ACTGTCTTCAAAG
* * * * *
274221 TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTACC--AAA----AAGGTCAAGACTGTCTTCAAAG
* *
274268 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * *
274311 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * *
274349 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
274387 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
274430 TCAGGACTGA
1 TCAGGACTGA
274440 TTCTTCTGGT
Statistics
Matches: 276, Mismatches: 63, Indels: 90
0.64 0.15 0.21
Matches are distributed among these distances:
33 20 0.07
35 2 0.01
37 10 0.04
38 38 0.14
39 10 0.04
41 20 0.07
42 16 0.06
43 105 0.38
44 4 0.01
45 6 0.02
46 12 0.04
47 16 0.06
48 4 0.01
49 7 0.03
50 3 0.01
51 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 273513 -- 274012
ATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTA
AAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAA
AACAGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 274440 -- 274939
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:274161 original size:76 final size:78
Alignment explanation
Indices: 274035--274475 Score: 329
Period size: 76 Copynumber: 5.4 Consensus size: 78
274025 TTATCAAAAA
* * *
274035 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
274098 GACTGATTCTTCT
66 GACTGATTCTTCT
* * *
274111 GGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* ***
274176 CAGGACTGATTATGGAA
63 CAGGACTGATTCT-TCT
* * * ** * * * * *
274193 GGACAGGACCAAT-TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGA-C--TGT-C-TTTCAAAG---TCAGGACTAACCTTACC---AA---AAAGGTCAAGA
* * *
274257 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
274290 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
274353 GACTGATTCTTCT
66 GACTGATTCTTCT
*
274366 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
274431 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
*
274447 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
274476 CATTCTTCTT
Statistics
Matches: 287, Mismatches: 44, Indels: 63
0.73 0.11 0.16
Matches are distributed among these distances:
76 105 0.37
77 4 0.01
79 4 0.01
80 6 0.02
81 62 0.22
82 5 0.02
83 3 0.01
84 15 0.05
85 1 0.00
86 4 0.01
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 13 0.05
94 2 0.01
95 25 0.09
96 1 0.00
97 7 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 273535 -- 274034
AGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGGACTCACCTTAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 274476 -- 274975
CATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCAT
ACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
CCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
Found at i:274430 original size:19 final size:19
Alignment explanation
Indices: 274406--274475 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
274396 ACCTTACCAA
274406 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
274425 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
274445 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
274463 AAAGGTCAGGACT
1 AAAGGTCAAGACT
274476 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
19 32 0.80
21 4 0.10
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 273906 -- 274405
AGGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAA
GATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 274476 -- 274975
CATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCAT
ACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
CCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
Found at i:274460 original size:38 final size:38
Alignment explanation
Indices: 274409--274484 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
274399 TTACCAAAAA
*
274409 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
274447 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
274485 TGAAAGGTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Left flanking sequence: Indices 273909 -- 274408
TCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGAT
GAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 274485 -- 274984
TGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAG
ATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTACCATACAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Found at i:274599 original size:21 final size:21
Alignment explanation
Indices: 274575--274640 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
274565 AAAGGTCAAG
274575 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
** *
274596 ACTCACCT-TA--CCATACAAG-
1 ACTCATTTGTATGTCAT-C-AGT
274615 ACTCATTTGTATGTCATCAGT
1 ACTCATTTGTATGTCATCAGT
274636 ACTCA
1 ACTCA
274641 CCTTATCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
18 3 0.09
19 7 0.21
20 8 0.24
21 12 0.36
22 3 0.09
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.35
Consensus pattern (21 bp):
ACTCATTTGTATGTCATCAGT
Left flanking sequence: Indices 274075 -- 274574
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAG
Right flanking sequence: Indices 274641 -- 275140
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
Found at i:274694 original size:43 final size:42
Alignment explanation
Indices: 274631--274800 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
274621 TTGTATGTCA
* * *
274631 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
274674 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
274712 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
274750 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
274793 TCAGGACT
1 TCAGGACT
274801 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 5 0.05
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 274131 -- 274630
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 274801 -- 275300
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGA
Found at i:274779 original size:76 final size:78
Alignment explanation
Indices: 274652--275044 Score: 260
Period size: 76 Copynumber: 4.8 Consensus size: 78
274642 CTTATCAAAA
* *
274652 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCA
1 AGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAATCA
274715 GGACTGATTCTTC
66 GGACTGATTCTTC
* * *
274728 TGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTG-AA--
* * **
274793 TCAGGACT-TTTGATGGA
63 TCAGGACTGATT-CT-TC
* * ** * * * * *
274810 AGGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
1 AGGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACC---AA---AAAGGTCAAG
* * *
274874 ACTGTCTTGAAATCAGTACTGACCTT-ATC
52 ACTATCTTG-AATCAGGACTGA--TTCTTC
* *
274903 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-
1 ----AGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGA
274966 ATCAGGACTGATTCTTC
62 ATCAGGACTGATTCTTC
* * * *
274983 TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAA
275045 AGGTCAGGAC
Statistics
Matches: 241, Mismatches: 44, Indels: 62
0.69 0.13 0.18
Matches are distributed among these distances:
76 103 0.43
77 4 0.02
78 1 0.00
79 3 0.01
80 4 0.02
81 25 0.10
82 7 0.03
83 2 0.01
84 14 0.06
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.09
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (78 bp):
AGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTATCTTGAATCA
GGACTGATTCTTC
Left flanking sequence: Indices 274152 -- 274651
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATA
CCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 275045 -- 275544
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTAC
TCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACA
AATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGA
AAGACCATTTTGTCCTAATTAGCTCATAATTGAATGGCATTAGTGCTTTTGATCAGAAAAAGATC
AGACTTCGCTTTGGCTTCCCTATAGTCCGTCATGAGCACTGAAAA
Found at i:274910 original size:41 final size:43
Alignment explanation
Indices: 274864--275055 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
274854 CCAAAAATGG
* * * *
274864 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
274905 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
274948 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
274983 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
275024 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
275056 TTTGATGGAA
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 274364 -- 274863
CTGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACT
GTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 275056 -- 275555
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCA
AAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCC
TTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTT
GTCCTAATTAGCTCATAATTGAATGGCATTAGTGCTTTTGATCAGAAAAAGATCAGACTTCGCTT
TGGCTTCCCTATAGTCCGTCATGAGCACTGAAAAGCGAGTGCTTT
Found at i:274913 original size:255 final size:255
Alignment explanation
Indices: 274630--275140 Score: 1004
Period size: 255 Copynumber: 2.0 Consensus size: 255
274620 TTTGTATGTC
274630 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
274695 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
274760 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
274825 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
*
274885 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
274950 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
275015 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
275080 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
196 GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
275140 A
1 A
275141 GGTCAGGACT
Statistics
Matches: 254, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
255 254 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (255 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
Left flanking sequence: Indices 274130 -- 274629
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTTTCCGGTCAAGACTCATTTG
TATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTACCATACAAGACTCATTTGTATGTC
Right flanking sequence: Indices 275141 -- 275640
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTC
CCAATGGCAATTGTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTAT
GCCATTAGTGCTGACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTCATAATT
GAATGGCATTAGTGCTTTTGATCAGAAAAAGATCAGACTTCGCTTTGGCTTCCCTATAGTCCGTC
ATGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTCACGTCACGAGCAAAGCCCTACGCTTTG
CGAGTGCTTTGCTCGTGACGTGACTTTGCGAGTGCTTTGTGGGCT
Found at i:275133 original size:95 final size:99
Alignment explanation
Indices: 275024--275217 Score: 263
Period size: 99 Copynumber: 2.0 Consensus size: 99
275014 ACCTTACCAA
* *
275024 AAAGGTCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
275085 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* *
275119 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
275184 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
275218 CCATTAGTAC
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
95 30 0.35
97 1 0.01
98 2 0.02
99 46 0.54
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (99 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 274524 -- 275023
TCATCAGTACTCACCATACCAAAAAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 275218 -- 275717
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATT
GTATGCCATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCT
GACTATCACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTCATAATTGAATGGCATTAG
TGCTTTTGATCAGAAAAAGATCAGACTTCGCTTTGGCTTCCCTATAGTCCGTCATGAGCACTGAA
AAGCGAGTGCTTTGTGCAATCACGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGC
TCGTGACGTGACTTTGCGAGTGCTTTGTGGGCTTTGCTCATCAATTGACGTAGGGGGAAGTTTCC
AAAATTTGATCGCACCGCACCCTCTATAGGCCTGGAGGAGCGAGA
Found at i:275162 original size:24 final size:24
Alignment explanation
Indices: 275133--275178 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
275123 GTCAAGACTG
275133 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
275157 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
275179 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 274633 -- 275132
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 275179 -- 275678
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCAC
CATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATACAACAAATT
GTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTATCACATTAATAACAAGAAAGA
CCATTTTGTCCTAATTAGCTCATAATTGAATGGCATTAGTGCTTTTGATCAGAAAAAGATCAGAC
TTCGCTTTGGCTTCCCTATAGTCCGTCATGAGCACTGAAAAGCGAGTGCTTTGTGCAATCACGTC
ACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGCTCGTGACGTGACTTTGCGAGTGCTTT
GTGGGCTTTGCTCATCAATTGACGTAGGGGGAAGTTTCCAAAATT
Found at i:275297 original size:28 final size:28
Alignment explanation
Indices: 275186--275288 Score: 206
Period size: 28 Copynumber: 3.7 Consensus size: 28
275176 ATTGCAATTC
275186 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
275214 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
275242 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
275270 AATGCCATTAGTACTCACT
1 AATGCCATTAGTACTCACT
275289 ATACCAACAT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 274686 -- 275185
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 275289 -- 275788
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTTTCCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACTAT
CACATTAATAACAAGAAAGACCATTTTGTCCTAATTAGCTCATAATTGAATGGCATTAGTGCTTT
TGATCAGAAAAAGATCAGACTTCGCTTTGGCTTCCCTATAGTCCGTCATGAGCACTGAAAAGCGA
GTGCTTTGTGCAATCACGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTTGCTCGTGA
CGTGACTTTGCGAGTGCTTTGTGGGCTTTGCTCATCAATTGACGTAGGGGGAAGTTTCCAAAATT
TGATCGCACCGCACCCTCTATAGGCCTGGAGGAGCGAGAGCGCGACGCATGATTCGCATTGTTCC
ATATACCGGAACAACCATTAGTTGTTGCCTTTTTGAAAACCAACA
Found at i:278711 original size:43 final size:43
Alignment explanation
Indices: 278663--278790 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
278653 ATTAGTACTC
* *
278663 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
278706 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * *
278749 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
278791 GATTCTTCTG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 5 0.06
43 73 0.94
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 278163 -- 278662
GGAGAAGCAAAGATATCAACGGAGGCCGGTTCGTCCTATTCAGCACGACAAAGAGGAACTTCCAG
TTCTTTCGGATAGGCCCAGAAAGGAAGGCTGGAATGCCTACATACGTCTATTATCTATCTAATTA
ACCCGATCCGATAGTACCCTTTGGAACGTCCAGTGCCAAAGTAACTTAATGGGTCAGTCGCCAAT
CCCTCTGACTATGTAATGTACTTTATTTGACGGGTGACAGGCGGGCATTTTCCAGAAGTTTCTAT
CGTATCAATCTACCCTTGTGTTATTCCTGTTGAAACATATACTCACTCGGGGAAAAAGCACTCGC
AAAGCGAAGCTTCAGGGAAAAGCGAAATCTTGAACAAAGCACTCGCAACTTTGAATTGAATGGCA
TGAATTTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 278791 -- 279290
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAA
TACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAA
Found at i:278747 original size:19 final size:19
Alignment explanation
Indices: 278677--278747 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
278667 TATCAAAAAG
* *
278677 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
278696 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
278719 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
278739 GTCAGGACT
1 GTCAAGACT
278748 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 278177 -- 278676
ATCAACGGAGGCCGGTTCGTCCTATTCAGCACGACAAAGAGGAACTTCCAGTTCTTTCGGATAGG
CCCAGAAAGGAAGGCTGGAATGCCTACATACGTCTATTATCTATCTAATTAACCCGATCCGATAG
TACCCTTTGGAACGTCCAGTGCCAAAGTAACTTAATGGGTCAGTCGCCAATCCCTCTGACTATGT
AATGTACTTTATTTGACGGGTGACAGGCGGGCATTTTCCAGAAGTTTCTATCGTATCAATCTACC
CTTGTGTTATTCCTGTTGAAACATATACTCACTCGGGGAAAAAGCACTCGCAAAGCGAAGCTTCA
GGGAAAAGCGAAATCTTGAACAAAGCACTCGCAACTTTGAATTGAATGGCATGAATTTCAGACCA
ATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 278748 -- 279247
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
Found at i:278783 original size:19 final size:19
Alignment explanation
Indices: 278759--278868 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
278749 ACCTTACCAA
278759 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
278778 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
278798 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
278816 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
278840 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
278856 AAAGGTCAGGACT
1 AAAGGTCAAGACT
278869 AATGAGAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
16 12 0.17
17 5 0.07
19 33 0.46
20 2 0.03
21 6 0.08
22 1 0.01
23 1 0.01
24 12 0.17
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 278259 -- 278758
GAATGCCTACATACGTCTATTATCTATCTAATTAACCCGATCCGATAGTACCCTTTGGAACGTCC
AGTGCCAAAGTAACTTAATGGGTCAGTCGCCAATCCCTCTGACTATGTAATGTACTTTATTTGAC
GGGTGACAGGCGGGCATTTTCCAGAAGTTTCTATCGTATCAATCTACCCTTGTGTTATTCCTGTT
GAAACATATACTCACTCGGGGAAAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAATCTT
GAACAAAGCACTCGCAACTTTGAATTGAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGAC
GATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 278869 -- 279368
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCAC
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAG
TCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
Found at i:278813 original size:38 final size:38
Alignment explanation
Indices: 278762--278839 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
278752 TTACCAAAAA
278762 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
278800 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
278838 GG
1 GG
278840 AAAGGTCAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 278262 -- 278761
TGCCTACATACGTCTATTATCTATCTAATTAACCCGATCCGATAGTACCCTTTGGAACGTCCAGT
GCCAAAGTAACTTAATGGGTCAGTCGCCAATCCCTCTGACTATGTAATGTACTTTATTTGACGGG
TGACAGGCGGGCATTTTCCAGAAGTTTCTATCGTATCAATCTACCCTTGTGTTATTCCTGTTGAA
ACATATACTCACTCGGGGAAAAAGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAATCTTGAA
CAAAGCACTCGCAACTTTGAATTGAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGACGAT
TTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 278840 -- 279339
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACC
TTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
Found at i:278974 original size:43 final size:42
Alignment explanation
Indices: 278915--279774 Score: 346
Period size: 43 Copynumber: 20.2 Consensus size: 42
278905 TTGTATGTCA
* * *
278915 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGT-CTTCAAAG
* * *
278958 TCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCACAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGT-CTTCAAAG
* * *
279001 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
* * ** *
279044 TCAGGACTGA-TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTATC-AAAAAGGTCAAGACTGTCTTCAAAG
* *
279085 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
279128 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
* * ** *
279171 TCAGGACTGATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
* * * ** * * *
279214 TCAGGACTCATTCTTCT-TGAAAGGTCAGGACTCAT-TATGGAAAAG
1 TCAGGACTGA-CCTTATCAAAAAGGTCAAGACT-GTCT-T--CAAAG
* * ** *
279259 TCAGGAAGGTGAGGACTT-TCTTGAAAGGTCAAGAC--TC-TGAAAGG
1 TCAGG-A-CTGA--CCTTATC-AAAAAGGTCAAGACTGTCTTCAAA-G
** * * *** * ** *
279303 TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATG
1 TCAGGAC---TGA-CCTTA-TCA--AA--AAGGTCAAGACT-GTCTTCAAAG
* *
279354 TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 ---TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * * *
279400 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
279438 TCAGGACTGA--TTCTTC----TGGTCAATACTGTATTTCAAAG
1 TCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
279476 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
* * ** *
279519 TCAGGACTGA-TTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTGACCTTATC-AAAAAGGTCAAGACTGTCTTCAAAG
*
279560 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * * *
279603 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
279641 TCAGGACTGA--TTCTTC----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGT-CTTCAAAG
* * *
279679 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
* * ** *
279722 TCAGGACTGATTCTTCT-GGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTATCAAAAAGGTCAAGACTGTCTTCAAA-G
279765 TCAGGACTGA
1 TCAGGACTGA
279775 TTCTTCTTGA
Statistics
Matches: 622, Mismatches: 128, Indels: 134
0.70 0.14 0.15
Matches are distributed among these distances:
33 19 0.03
35 2 0.00
36 4 0.01
37 4 0.01
38 37 0.06
39 4 0.01
40 4 0.01
41 52 0.08
42 40 0.06
43 362 0.58
44 18 0.03
45 19 0.03
46 10 0.02
47 6 0.01
48 3 0.00
49 23 0.04
50 2 0.00
51 3 0.00
52 4 0.01
54 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (42 bp):
TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 278415 -- 278914
GTTTCTATCGTATCAATCTACCCTTGTGTTATTCCTGTTGAAACATATACTCACTCGGGGAAAAA
GCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAATCTTGAACAAAGCACTCGCAACTTTGAATT
GAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAA
AGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 279775 -- 280274
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTT
GACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATT
AGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAA
AAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
Found at i:278990 original size:24 final size:24
Alignment explanation
Indices: 278924--278990 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 24
278914 ATCAGTACTC
278924 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
*
278948 TA--TT-TC--AAA-GTCAGGACTG
1 -ACCTTATCAAAAAGGTCAAGACTG
*
278967 ACCTTATCAAAAAGGTCAATACTG
1 ACCTTATCAAAAAGGTCAAGACTG
278991 TATTTCACAG
Statistics
Matches: 33, Mismatches: 3, Indels: 13
0.67 0.06 0.27
Matches are distributed among these distances:
18 1 0.03
19 9 0.27
20 5 0.15
21 2 0.06
22 2 0.06
23 5 0.15
24 8 0.24
25 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 278424 -- 278923
GTATCAATCTACCCTTGTGTTATTCCTGTTGAAACATATACTCACTCGGGGAAAAAGCACTCGCA
AAGCGAAGCTTCAGGGAAAAGCGAAATCTTGAACAAAGCACTCGCAACTTTGAATTGAATGGCAT
GAATTTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTT
GATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
Right flanking sequence: Indices 278991 -- 279490
TATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTA
TGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTA
Found at i:279044 original size:19 final size:19
Alignment explanation
Indices: 279020--279084 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
279010 ACCTTACCAA
279020 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279039 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
279063 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
279082 AAA
1 AAA
279085 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 278520 -- 279019
AACAAAGCACTCGCAACTTTGAATTGAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGACG
ATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 279085 -- 279584
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
Found at i:279113 original size:170 final size:170
Alignment explanation
Indices: 278914--279245 Score: 479
Period size: 170 Copynumber: 2.0 Consensus size: 170
278904 TTTGTATGTC
* *
278914 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAA
* * *
278979 AGGTCAATACTGTATTTCACA-GTCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
66 AGGTCAAGACTGT-CTTCAAAGGTCAGGACTGAACCTT-CCAAAAAGGTCAAGACTGTCTTGAAA
* *
279042 GGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
129 GGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
* * *
279084 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAA
* ** ***
279149 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGG
66 AGGTCAAGACTGTCTTCAAAGGTCAGGACTGAACCTTCCAAAAAGGTCAAGACTGTCTTGAAAGG
*
279214 TCAGGACTCATTCTTCTTGAAAGGTCAGGACT
131 TCAGGACTCATTCTTCTTGAAAGGTCAAGACT
279246 CATTATGGAA
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
169 4 0.03
170 135 0.94
171 4 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (170 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAA
AGGTCAAGACTGTCTTCAAAGGTCAGGACTGAACCTTCCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
Left flanking sequence: Indices 278414 -- 278913
AGTTTCTATCGTATCAATCTACCCTTGTGTTATTCCTGTTGAAACATATACTCACTCGGGGAAAA
AGCACTCGCAAAGCGAAGCTTCAGGGAAAAGCGAAATCTTGAACAAAGCACTCGCAACTTTGAAT
TGAATGGCATGAATTTCAGACCAATGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGT
CAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAA
AAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 279246 -- 279745
CATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
Found at i:279171 original size:19 final size:19
Alignment explanation
Indices: 279147--279221 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
279137 ACCTTACCAA
279147 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279166 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
279190 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279209 AAAGGTCAGGACT
1 AAAGGTCAAGACT
279222 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 278647 -- 279146
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 279222 -- 279721
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAA
GACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
Found at i:279246 original size:24 final size:24
Alignment explanation
Indices: 279161--279249 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
279151 GTCAAGACTG
*
279161 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
279185 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
279204 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
279228 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
279250 ATGGAAAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 1 0.02
23 1 0.02
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 278661 -- 279160
TCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAA
TACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 279250 -- 279749
ATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
Found at i:279301 original size:16 final size:16
Alignment explanation
Indices: 279280--279310 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
279270 AGGACTTTCT
279280 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
279296 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
279311 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 278780 -- 279279
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCT
Right flanking sequence: Indices 279311 -- 279810
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGT
Found at i:279505 original size:76 final size:80
Alignment explanation
Indices: 279378--279610 Score: 244
Period size: 76 Copynumber: 2.9 Consensus size: 80
279368 CTTATCAAAA
* *
279378 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGT-TTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
279440 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
* *
279455 -GGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGT-TTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
279519 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * * *
279537 GAAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
1 ---AGGTCAAGACTGTTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TT-GA
279601 AGTCAGGACT
61 AGTCAGGACT
279611 AACCTTACCA
Statistics
Matches: 132, Mismatches: 12, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
76 51 0.39
77 2 0.02
79 1 0.01
81 15 0.11
82 1 0.01
84 42 0.32
85 9 0.07
86 11 0.08
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (80 bp):
AGGTCAAGACTGTTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 278878 -- 279377
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGG
TGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 279611 -- 280110
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATAT
GCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTG
TACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAA
Found at i:279519 original size:19 final size:19
Alignment explanation
Indices: 279495--279559 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
279485 ACCTTACCAA
279495 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279514 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
279538 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
279557 AAA
1 AAA
279560 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 278995 -- 279494
TCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
TTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 279560 -- 280059
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGT
CAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAAC
AAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCA
CTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTAC
Found at i:279690 original size:76 final size:79
Alignment explanation
Indices: 279582--279740 Score: 243
Period size: 76 Copynumber: 2.0 Consensus size: 79
279572 TTATCAAAAA
*
279582 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
279644 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * *
279658 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
279723 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
279739 GG
1 GG
279741 AAAGGTCAAG
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 52 0.70
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 279082 -- 279581
AAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTT
TCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTC
AAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 279741 -- 280240
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATAT
GCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTG
TACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
Found at i:279705 original size:203 final size:203
Alignment explanation
Indices: 279356--279762 Score: 760
Period size: 203 Copynumber: 2.0 Consensus size: 203
279346 TTTGTATGTC
279356 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
* *
279421 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
* *
279486 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
279551 GTCTTGAA
196 GTCTTGAA
*
279559 ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
1 ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
*
279624 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAA
66 AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
279689 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
131 CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
279754 GTCTTGAA
196 GTCTTGAA
279762 A
1 A
279763 GGTCAGGACT
Statistics
Matches: 198, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
203 198 1.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (203 bp):
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACT
GTCTTGAA
Left flanking sequence: Indices 278856 -- 279355
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAA
TACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAAAGTCAGGAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 279763 -- 280262
GGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTC
TTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTA
TGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAA
ACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTAC
TCACCATACCAAAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
Found at i:279722 original size:19 final size:19
Alignment explanation
Indices: 279698--279773 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
279688 ACCTTACCAA
279698 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279717 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
279741 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
279760 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
279774 ATTCTTCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 279198 -- 279697
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTGAGGACTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 279774 -- 280273
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCAT
TAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCA
AAAAGATGGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
ACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
Found at i:279743 original size:24 final size:24
Alignment explanation
Indices: 279712--279912 Score: 160
Period size: 24 Copynumber: 8.8 Consensus size: 24
279702 GTCAAGACTG
279712 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
* *
279736 TCTGGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
279755 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
279779 TCTTGAAAGGTCAGGACTCA---T
1 TCTTGAAAGGTCAGGACTGATTCT
* * * * *
279800 TATGGAAAAGTCAGGAAGGTCAGGACTCT
1 TCTTGAAAGGTCAGG-A---C-TGATTCT
*
279829 T-TTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
279847 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
279871 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
279895 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
279913 CATTGCAATT
Statistics
Matches: 142, Mismatches: 16, Indels: 38
0.72 0.08 0.19
Matches are distributed among these distances:
18 1 0.01
19 32 0.23
21 13 0.09
22 1 0.01
23 1 0.01
24 79 0.56
25 1 0.01
26 1 0.01
27 1 0.01
28 10 0.07
29 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 279212 -- 279711
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTT
TCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTC
AAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 279913 -- 280412
CATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAA
AATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
Found at i:279750 original size:119 final size:122
Alignment explanation
Indices: 279455--279781 Score: 326
Period size: 119 Copynumber: 2.6 Consensus size: 122
279445 TGATTCTTCT
* * * * *
279455 GGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
* * * * * * *
279520 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGT-CTTGA-AATCAGTACTGACCTTATCAAAAA
64 CAGGACTGATTCTTC-T----GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
279582 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
279644 GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
66 GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
* ** *** * *
279701 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAG
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAAAAAGATCAAGACTATCTTG-AA-
279764 GTCAGGACTGATTCTTCT
62 GTCAGGACTGATTCTTCT
279782 TGAAAGGTCA
Statistics
Matches: 171, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
117 12 0.07
118 8 0.05
119 57 0.33
120 6 0.04
121 1 0.01
122 16 0.09
124 18 0.11
126 2 0.01
127 51 0.30
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (122 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
Left flanking sequence: Indices 278955 -- 279454
AAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 279782 -- 280281
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACA
AAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTT
TCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATG
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCT
TACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
Done.