123.fas.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  4  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95890--96071	28	6.5	28	96	3	316	37	24	11	25	1.89
96301--96362	34	1.9	31	87	12	90	14	25	29	30	1.95
97675--97713	18	2.2	17	86	4	51	15	30	23	30	1.95
99994--100053	18	3.0	20	75	15	63	33	15	38	13	1.86
106844--106926	28	3.0	28	92	0	139	24	10	26	38	1.88
106910--107089	95	1.9	98	84	6	251	27	22	17	32	1.96
107072--107270	43	4.9	43	74	14	204	26	17	23	32	1.97
107101--107171	19	3.5	19	68	17	52	26	19	22	30	1.98
107317--107389	19	3.7	19	74	20	62	23	28	16	31	1.96
107466--107579	43	2.7	43	92	0	192	26	15	22	35	1.94
107514--107579	19	3.0	24	70	21	79	24	16	21	37	1.93
107495--107565	19	3.5	19	70	17	52	28	18	22	30	1.97
107746--107915	43	4.2	42	70	18	144	25	18	22	33	1.96
107993--108063	19	3.7	19	73	14	74	26	28	16	28	1.97
108049--108244	43	4.8	43	74	14	198	26	16	22	34	1.95
108075--108145	19	3.5	19	67	23	54	26	19	21	32	1.97
108011--108244	119	1.9	121	91	4	382	26	18	22	32	1.97
108299--108425	28	4.6	28	83	12	165	28	11	24	36	1.89
108498--108528	16	1.9	16	100	0	62	19	32	16	32	1.94
108498--108588	19	4.7	19	75	16	71	26	26	16	30	1.97
108512--108574	24	2.9	22	79	11	69	31	23	17	26	1.97
108557--108693	43	3.2	43	90	2	195	25	17	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108600--108664	19	3.2	19	70	19	58	27	18	20	33	1.96
108575--108684	24	5.0	24	65	23	80	24	16	20	38	1.93
109099--109192	48	2.0	48	93	0	161	30	11	25	31	1.91
109123--109214	25	3.8	25	76	18	104	32	11	26	29	1.92
109226--109275	19	2.6	19	84	6	66	26	28	14	32	1.94
109294--109473	43	4.3	43	70	12	133	26	20	19	33	1.96
109299--109473	81	2.1	83	89	5	264	26	19	19	34	1.96
109316--109492	43	4.2	42	71	11	148	25	18	20	35	1.95
109614--109698	24	3.8	24	81	15	126	30	25	16	27	1.97
109614--109712	24	4.7	19	78	17	90	28	26	16	29	1.97
109614--109712	43	2.3	43	98	0	189	28	26	16	29	1.97
109636--109893	43	6.2	43	74	13	177	26	19	20	32	1.97
109940--109970	16	1.9	16	93	0	53	19	29	16	35	1.93
109940--110064	43	3.0	43	82	8	125	25	20	20	32	1.97
109796--110126	180	1.9	168	82	11	400	26	20	19	33	1.97
110052--110262	119	1.8	117	87	7	313	25	22	18	33	1.96
110248--110400	43	3.8	42	68	19	119	26	16	22	33	1.96
110478--110548	19	3.7	19	73	14	74	26	28	16	28	1.97
110475--110605	38	3.3	38	79	14	156	29	24	19	27	1.98
110515--110889	43	9.2	43	70	15	251	26	19	20	33	1.97
110477--110664	76	2.4	76	88	4	259	27	21	19	31	1.98
110687--110751	19	3.2	19	76	19	76	29	24	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110489--110890	203	2.0	198	93	3	689	27	19	20	32	1.97
110898--110957	19	2.9	21	70	12	61	28	26	13	31	1.94
111371--111402	16	2.0	16	100	0	64	50	6	25	18	1.70
117577--117638	19	3.1	21	77	11	76	32	16	27	24	1.96
117648--117720	28	2.6	28	97	0	137	35	26	12	26	1.91
119739--119839	28	3.6	28	93	5	177	25	11	25	36	1.90
119985--120140	43	3.9	43	69	19	145	26	16	24	32	1.96
120116--120267	64	2.4	65	86	5	220	26	17	21	34	1.95
120282--120345	28	2.3	29	94	5	114	26	10	25	37	1.89
120294--120360	28	2.5	28	85	4	84	29	10	23	35	1.89
120489--120519	16	1.9	16	100	0	62	16	32	19	32	1.94
120672--120721	19	2.6	19	87	0	73	26	28	16	30	1.96
120734--120824	24	4.0	24	81	13	129	31	24	17	26	1.97
120740--120838	24	4.7	19	78	17	90	28	26	16	29	1.97
120672--120881	43	4.7	43	81	9	210	26	24	17	31	1.97
120850--120920	19	3.5	19	70	17	52	26	19	21	32	1.97
120762--120943	43	4.2	43	86	4	208	25	20	20	33	1.97
121352--121533	28	6.5	28	97	2	316	25	11	24	37	1.89
121543--121596	19	2.8	19	77	2	63	22	27	18	31	1.97
121581--121626	24	1.9	24	100	0	92	32	21	19	26	1.97
121609--121778	43	4.2	43	69	18	139	25	18	21	34	1.96
121786--121826	19	2.2	19	90	0	64	29	24	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121792--121866	19	3.7	20	78	16	73	26	25	17	30	1.97
121833--122004	43	4.2	42	67	18	121	26	18	22	33	1.96
121826--121982	76	2.0	78	86	6	219	28	19	21	31	1.97
121584--122472	226	4.0	225	95	1	1597	28	18	21	32	1.96
122056--122225	43	4.2	42	66	18	117	26	17	22	33	1.96
122239--122313	19	3.7	19	73	16	69	28	25	13	33	1.93
122273--122429	76	2.0	78	91	6	255	27	19	20	33	1.96
121585--122472	447	2.0	447	97	0	1668	28	18	20	32	1.96
122514--122579	24	2.8	24	92	0	105	30	24	18	27	1.98
122238--122757	280	1.9	277	93	4	891	27	19	19	33	1.96
122562--122736	43	4.2	42	73	14	164	25	18	21	33	1.96
122553--122714	81	2.0	81	92	0	270	27	19	21	31	1.98
122745--122804	19	2.9	21	70	12	61	28	26	13	31	1.94
122978--123008	16	1.9	16	100	0	62	32	16	32	19	1.94
123180--123299	28	4.3	28	95	4	208	38	25	10	25	1.88
123343--123415	19	3.6	19	75	15	74	26	19	26	28	1.98
123373--123418	24	1.9	24	100	0	92	26	19	21	32	1.97
123481--123562	20	3.7	20	74	22	83	29	24	12	34	1.91
124023--124087	22	3.1	22	69	13	64	30	12	26	30	1.92
124096--124358	43	6.2	42	79	9	225	33	20	20	25	1.97
124200--124270	19	3.5	19	67	23	54	32	21	19	26	1.97
124096--124324	124	1.8	124	92	0	386	33	21	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124282--124357	19	3.7	19	79	16	89	30	15	28	25	1.96
124435--124592	43	3.8	43	69	17	134	34	22	15	27	1.94
124457--124620	81	2.0	81	97	0	310	31	20	19	28	1.97
124477--124652	43	4.2	43	70	13	143	32	19	21	26	1.97
124587--124652	19	3.2	19	76	19	78	27	16	28	27	1.97
124595--124680	24	3.8	23	77	16	108	27	16	26	29	1.97
124578--124677	43	2.3	43	92	0	164	30	17	26	27	1.97
124777--124848	19	3.7	19	72	22	60	31	16	27	23	1.96
124724--124848	43	3.0	43	82	8	125	33	20	22	24	1.97
124914--125117	86	2.4	85	88	1	300	35	17	20	26	1.95
125043--125117	19	3.7	19	73	16	69	33	13	25	28	1.93
124895--125076	43	4.2	42	75	6	168	36	20	17	25	1.94
124914--125117	43	4.7	43	71	7	146	35	17	20	26	1.95
125083--125123	19	2.2	19	86	0	55	31	9	26	31	1.89
125131--125384	43	6.2	42	72	13	215	33	20	19	26	1.97
125269--125427	19	7.7	19	69	23	90	31	17	23	27	1.97
125150--125412	84	3.2	84	83	9	330	31	20	20	27	1.97
125269--125431	43	3.8	43	81	6	197	31	17	23	27	1.97
124917--125610	310	2.2	312	94	0	1203	32	20	19	27	1.97
125441--125610	43	4.2	42	68	18	126	32	22	18	25	1.97
125718--125876	76	2.0	79	87	6	234	30	21	20	27	1.98
125834--125908	19	3.7	19	78	16	87	30	16	28	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125674--125908	43	5.7	42	74	14	197	32	20	20	26	1.97
125834--125932	43	2.3	43	94	0	171	29	17	26	27	1.97
125848--125933	24	3.8	24	74	14	101	26	18	25	29	1.98
125894--125972	19	3.8	20	80	10	79	27	20	26	25	1.99
125893--125972	24	3.8	20	80	9	90	27	20	26	26	1.99
125984--126165	28	6.5	28	98	1	348	37	24	11	25	1.89
128761--128942	28	6.5	28	98	1	348	25	11	24	37	1.89
128952--129005	19	2.8	19	77	2	63	22	27	18	31	1.97
128990--129035	24	1.9	24	100	0	92	32	21	19	26	1.97
129113--129282	43	4.2	42	69	18	126	25	17	22	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20