Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 3 of 20
Found at i:65900 original size:24 final size:21
Alignment explanation
Indices: 65871--65934 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 21
65861 CAAGACTGTC
65871 TTGAAAGGTCAGGACTCATTCT
1 TTGAAAGGTCAGGACTCATT-T
65893 TCTGGAAAGGTCAGGACTC--TT
1 T-T-GAAAGGTCAGGACTCATTT
*
65914 TTGAAAGGTCAAGACTCATTT
1 TTGAAAGGTCAGGACTCATTT
65935 GTATGTCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
21 4 0.11
22 2 0.05
23 1 0.03
24 15 0.41
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (21 bp):
TTGAAAGGTCAGGACTCATTT
Left flanking sequence: Indices 65371 -- 65870
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Right flanking sequence: Indices 65935 -- 66434
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGACTGTATTTCAAA
GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
Found at i:65918 original size:43 final size:43
Alignment explanation
Indices: 65852--65933 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
65842 TGACCAAAAA
* *
65852 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
* *
65895 TGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATT
1 TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATT
65934 TGTATGTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (43 bp):
TGGAAAGGTCAAGACTCTCTTGAAAGGTCAAGACTCATTCTTC
Left flanking sequence: Indices 65352 -- 65851
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Right flanking sequence: Indices 65934 -- 66433
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGACTGTATTTCAA
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGT
CAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
Found at i:66008 original size:43 final size:42
Alignment explanation
Indices: 65943--66117 Score: 137
Period size: 43 Copynumber: 4.2 Consensus size: 42
65933 TTGTATGTCA
* * *
65943 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
65986 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * * *
66028 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
66067 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
66110 TCAGGACT
1 TCAGGACT
66118 TTTGATGGAA
Statistics
Matches: 99, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
37 3 0.03
38 17 0.17
39 6 0.06
42 11 0.11
43 58 0.59
44 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 65443 -- 65942
GGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 66118 -- 66617
TTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGA
CTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATT
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTA
CTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGAC
Found at i:66190 original size:326 final size:328
Alignment explanation
Indices: 65592--66202 Score: 1163
Period size: 326 Copynumber: 1.9 Consensus size: 328
65582 CCTGACCATA
65592 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
65657 AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGG
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTT---AGG
*
65722 TCCATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCA
128 TCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCA
65787 GGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
193 GGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
65852 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTG
258 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTG
65917 AAAGGT
323 AAAGGT
65923 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
1 CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
65988 AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-GGTCA
66 AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTAGGTCA
*
66051 ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
131 ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
66116 CTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
196 CTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
66181 AAAGGTCAAGACTGTCTTGAAA
261 AAAGGTCAAGACTGTCTTGAAA
66203 TCAGTACTGA
Statistics
Matches: 278, Mismatches: 2, Indels: 5
0.98 0.01 0.02
Matches are distributed among these distances:
326 155 0.56
330 1 0.00
331 122 0.44
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (328 bp):
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTAGGTCA
ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAA
GGT
Left flanking sequence: Indices 65092 -- 65591
AGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
Right flanking sequence: Indices 66203 -- 66702
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGACTGTATTTCAAAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGT
ATGTCATTAGTCCTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTC
TGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
Found at i:66274 original size:43 final size:42
Alignment explanation
Indices: 66181--66376 Score: 201
Period size: 43 Copynumber: 4.7 Consensus size: 42
66171 CCAAAAATGG
* * *
66181 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTAACCTTACCAA
*
66222 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTAACCTTACCAA
* * *
66265 AAAGATCAAGACTATCTTGAAAGATCAGGACTGA--TT-CTC--
1 AAAGGTCAAGACTGTCTTGAAAG-TCAGGACTAACCTTAC-CAA
* * *
66304 --TGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTAACCTTACCAA
66345 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
66377 GATTCTTCTG
Statistics
Matches: 125, Mismatches: 17, Indels: 24
0.75 0.10 0.14
Matches are distributed among these distances:
37 19 0.15
38 6 0.05
39 3 0.02
40 2 0.02
41 19 0.15
42 16 0.13
43 60 0.48
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 65681 -- 66180
AAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC
AAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 66377 -- 66876
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCAT
TGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGT
ACTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGACAAAACAAAATAGCAATTCT
TTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
Found at i:66323 original size:80 final size:80
Alignment explanation
Indices: 66225--66414 Score: 301
Period size: 80 Copynumber: 2.4 Consensus size: 80
66215 TTATCAAAAA
66225 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGT-TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
66290 CAGGACTGATTC-TCT
65 CAGGACTGATTCTTCT
* * *
66305 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGT-TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
66370 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
* *
66386 GGTCAAGACTGTCTTGAAAGGTCAGGACT
1 GGTCAAGACTGTTTTCAAA-GTCAGGACT
66415 CATTCTTCTT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
80 78 0.76
81 24 0.24
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (80 bp):
GGTCAAGACTGTTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCT
Left flanking sequence: Indices 65725 -- 66224
ATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 66415 -- 66914
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTT
CCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTT
GAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
Found at i:66369 original size:19 final size:19
Alignment explanation
Indices: 66345--66414 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
66335 ACCTTACCAA
66345 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
66364 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
66384 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
66402 AAAGGTCAGGACT
1 AAAGGTCAAGACT
66415 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
19 32 0.80
21 4 0.10
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 65845 -- 66344
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGAC
TCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGAT
TCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGAT
TCTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 66415 -- 66914
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTT
CCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTT
GAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
Found at i:66399 original size:38 final size:38
Alignment explanation
Indices: 66270--66423 Score: 152
Period size: 38 Copynumber: 3.9 Consensus size: 38
66260 ACCAAAAAGA
* *
66270 TCAAGACTATCTTGAAAGATCAGGACTGATTC-TCTGG
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
* * ** *
66307 TCAAGACTGTATTTCAAA-GTCAGGACT-AACCTTACCAAAAAGG
1 TCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT--C----TGG
66350 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
*
66388 TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
66424 TGAAAGGTCA
Statistics
Matches: 94, Mismatches: 13, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
36 2 0.02
37 18 0.19
38 42 0.45
39 1 0.01
42 6 0.06
43 21 0.22
44 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (38 bp):
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 65770 -- 66269
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
Right flanking sequence: Indices 66424 -- 66923
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAA
AAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGACA
AAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
Found at i:66426 original size:24 final size:24
Alignment explanation
Indices: 66397--66442 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
66387 GTCAAGACTG
66397 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
66421 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
66443 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 65897 -- 66396
GAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
Right flanking sequence: Indices 66443 -- 66942
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTA
CTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGACAAAACAAAATAGCAATTCTT
TAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTC
TGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
Found at i:66482 original size:28 final size:28
Alignment explanation
Indices: 66450--66542 Score: 186
Period size: 28 Copynumber: 3.3 Consensus size: 28
66440 ATTGCAATTC
66450 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
66478 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
66506 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
66534 AATGCCATT
1 AATGCCATT
66543 TTCCATACCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 65950 -- 66449
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 66543 -- 67042
TTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCCTT
TTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Found at i:66799 original size:43 final size:42
Alignment explanation
Indices: 66736--66905 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
66726 TTGTATGTCA
* * *
66736 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
66779 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
66817 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
66855 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
66898 TCAGGACT
1 TCAGGACT
66906 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 66236 -- 66735
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTCTGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAAAAATTGT
ATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGACAAAACAAA
ATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 66906 -- 67405
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT
TGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCTCAC
ATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTAT
Found at i:67123 original size:76 final size:79
Alignment explanation
Indices: 67013--67169 Score: 221
Period size: 76 Copynumber: 2.0 Consensus size: 79
67003 TTATCAAAAA
*
67013 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
67075 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
67089 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
67154 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
67170 TGAAAGGTCA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
76 50 0.71
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 66513 -- 67012
TTAGTACTCACTTGACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCAC
TTGACCAAAAATTGTATGTCATTAGTCCTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGA
AAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 67170 -- 67669
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTGCA
ATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCTCACATTA
AACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTCTCCATACCACAAATGCA
ATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAATTGATGGAATCTTGAAAGAAACCATCAAAA
AAGGAACCATACAACAAATTGTATGCCATTAGTGCTGACTATCACATTAATACCAAAAAGCTTAT
GGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAA
Found at i:67137 original size:43 final size:43
Alignment explanation
Indices: 66969--67205 Score: 142
Period size: 43 Copynumber: 5.8 Consensus size: 43
66959 CCAAAAATGG
* * * * *
66969 AAAGGTCAAGACTGT-CTTGAA-ATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * *
67010 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * * *
67053 AAAGATCAAGAC--TA--TC-TGATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* *
67088 --TGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* ** * ***
67129 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* **
67172 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA
67206 TTCTTCTTGA
Statistics
Matches: 153, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
33 7 0.05
35 2 0.01
37 6 0.04
38 20 0.13
39 6 0.04
41 16 0.10
42 4 0.03
43 89 0.58
44 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 66469 -- 66968
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCA
TTAGTCCTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 67206 -- 67705
TTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCC
ATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTCTCCATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAAT
TGATGGAATCTTGAAAGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGCT
GACTATCACATTAATACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
Found at i:67153 original size:19 final size:19
Alignment explanation
Indices: 67129--67204 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
67119 ACCTTACCAA
67129 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
67148 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
67172 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
67191 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
67205 ATTCTTCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 66629 -- 67128
GCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 67205 -- 67704
ATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAAT
GCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTC
CATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAA
TTGTATGCCATTCTCCATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAA
TTGATGGAATCTTGAAAGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGC
TGACTATCACATTAATACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAG
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
Found at i:67172 original size:24 final size:24
Alignment explanation
Indices: 67143--67227 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
67133 GTCAAGACTG
67143 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
67167 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
67186 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
67210 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
67228 CATTGCAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.33
24 36 0.67
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 66643 -- 67142
AAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 67228 -- 67727
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCT
CACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTCTCCATACCAC
AAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAATTGATGGAATCTTGAAAGAAACC
ATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGCTGACTATCACATTAATACCAAAA
AGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
Found at i:67206 original size:43 final size:43
Alignment explanation
Indices: 67129--67227 Score: 189
Period size: 43 Copynumber: 2.3 Consensus size: 43
67119 ACCTTACCAA
67129 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
67172 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
67215 AAAGGTCAGGACT
1 AAAGGTCAAGACT
67228 CATTGCAATT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 66629 -- 67128
GCAATTCTTTAGGAAAAGTTAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 67228 -- 67727
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCT
CACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTCTCCATACCAC
AAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAATTGATGGAATCTTGAAAGAAACC
ATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGCTGACTATCACATTAATACCAAAA
AGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
Found at i:67271 original size:28 final size:28
Alignment explanation
Indices: 67239--67331 Score: 170
Period size: 28 Copynumber: 3.3 Consensus size: 28
67229 ATTGCAATTC
67239 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
67267 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
67295 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
67323 AATGCCATT
1 AATGCCATT
67332 TTCCATCAAC
Statistics
Matches: 63, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
27 2 0.03
28 59 0.94
29 2 0.03
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 66739 -- 67238
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 67332 -- 67831
TTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGG
CAATTGTATGCCATTCTCCATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAG
CAATTGATGGAATCTTGAAAGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAG
TGCTGACTATCACATTAATACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
ATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGT
Found at i:67670 original size:16 final size:16
Alignment explanation
Indices: 67649--67679 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
67639 AGGACCCTTT
67649 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
67665 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
67680 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 67149 -- 67648
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAA
TGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCC
ATTCTCCATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAATTGATGGAA
TCTTGAAAGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGCTGACTATCA
CATTAATACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 67680 -- 68179
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTCAGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGAC
AGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATT
Found at i:67746 original size:43 final size:42
Alignment explanation
Indices: 67698--67795 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
67688 TGATTGAGGA
* * *
67698 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
67741 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
67783 AAAGATCAGAACT
1 AAAG-TCAGAACT
67796 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 67198 -- 67697
AGGACTGATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTTTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCA
ATGGCAATTGTATGCCATTCTCCATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGA
AAAGCAATTGATGGAATCTTGAAAGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCA
TTAGTGCTGACTATCACATTAATACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 67796 -- 68295
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAAACAGGTCAGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACA
ACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
Found at i:67874 original size:28 final size:28
Alignment explanation
Indices: 67851--67970 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
67841 TGACAATTGT
67851 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
67879 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
67907 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
67935 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
67963 ATGCCATT
1 ATGCCATT
67971 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.03
28 84 0.93
29 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 67351 -- 67850
TGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTCTCC
ATACCACAAATGCAATTGTATGCCATTAGTACTTTTGAAGGAAAAGCAATTGATGGAATCTTGAA
AGAAACCATCAAAAAAGGAACCATACAACAAATTGTATGCCATTAGTGCTGACTATCACATTAAT
ACCAAAAAGCTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 67971 -- 68470
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGAACTTTCTTGAAAGGTAAGGACTC
TTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATT
CTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGAC
AATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
TTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTCACTTGACCAAAAATTG
TATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
Found at i:68041 original size:19 final size:19
Alignment explanation
Indices: 68005--68160 Score: 116
Period size: 19 Copynumber: 7.6 Consensus size: 19
67995 ATACCAAAAC
*
68005 AGGTCAGAACT-TTCTTGAA
1 AGGTCAGGACTCTT-TTGAA
*
68024 AGGTAAGGACTCTTTTGAA
1 AGGTCAGGACTCTTTTGAA
* * *
68043 AGGTCAAGACTGTCTTGAA
1 AGGTCAGGACTCTTTTGAA
68062 AGGTCAGGACTCATTCTTCTTGAA
1 AGGTCAGGA--C--TCTT-TTGAA
68086 AGGTCAGGACTCATTCTTCTTGAA
1 AGGTCAGGA--C--TCTT-TTGAA
* *
68110 AGGTCAGGACTCATTATGGA
1 AGGTCAGGACTC-TTTTGAA
* *
68130 AGGACAGGACCCTTTTGAA
1 AGGTCAGGACTCTTTTGAA
68149 AGGTCAGGACTC
1 AGGTCAGGACTC
68161 ATGACAATTG
Statistics
Matches: 113, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
19 52 0.46
20 17 0.15
21 3 0.03
22 1 0.01
23 2 0.02
24 38 0.34
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (19 bp):
AGGTCAGGACTCTTTTGAA
Left flanking sequence: Indices 67505 -- 68004
ACAACAAATTGTATGCCATTAGTGCTGACTATCACATTAATACCAAAAAGCTTATGGAAAGGTTA
TGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAG
GTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 68161 -- 68660
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTA
GTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTCACTTGACCAAA
AATTGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCA
Found at i:68084 original size:24 final size:24
Alignment explanation
Indices: 68055--68124 Score: 140
Period size: 24 Copynumber: 2.9 Consensus size: 24
68045 GTCAAGACTG
68055 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
68079 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
68103 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
68125 ATGGAAGGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 67555 -- 68054
CTTATGGAAAGGTTATGGAAAAGTAAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGA
GGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACA
GGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTC
AGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTG
Right flanking sequence: Indices 68125 -- 68624
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAA
ATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTGCAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGTTATTAGTACTCACCATACC
AAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGT
Found at i:68195 original size:28 final size:28
Alignment explanation
Indices: 68172--68357 Score: 171
Period size: 28 Copynumber: 7.0 Consensus size: 28
68162 TGACAATTGT
*
68172 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
68200 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
68228 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
68256 TTG-TA-T-GTCTCTCACTTGACAACAAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
* *
68282 ATGCCATTAGTACT---TT--C---CAT
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
68302 ATGCCATTAGTACTCACTGTG-CAAACAA
1 ATGCCATTAGTACTCACT-TGACAAAAAA
*
68330 ATGCCATTAGTACTCACTTGACCAAAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
68358 TTGTATGTTA
Statistics
Matches: 132, Mismatches: 13, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
20 15 0.11
23 2 0.02
24 1 0.01
25 5 0.04
26 19 0.14
27 4 0.03
28 84 0.64
29 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 67672 -- 68171
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCT
TCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCAT
ACCAAAACAGGTCAGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 68358 -- 68857
TTGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACT
CATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCC
Found at i:68289 original size:54 final size:56
Alignment explanation
Indices: 68172--68351 Score: 199
Period size: 54 Copynumber: 3.4 Consensus size: 56
68162 TGACAATTGT
68172 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
* *
68228 ATGCCATTAGTACTCACTTGAC-AACAAATTG-TA-T-GTCTCTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGCCATTAGT-ACTCACTTGACAACAAA
*
68282 ATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCACTGTG-CAA-ACAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT-TGACAACA-AA
68330 ATGCCATTAGTACTCACTTGAC
1 ATGCCATTAGTACTCACTTGAC
68352 CAAAAATTGT
Statistics
Matches: 107, Mismatches: 5, Indels: 27
0.77 0.04 0.19
Matches are distributed among these distances:
46 2 0.02
47 5 0.05
48 26 0.24
49 5 0.05
51 4 0.04
53 3 0.03
54 31 0.29
55 7 0.07
56 24 0.22
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 67672 -- 68171
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCT
TCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCAT
ACCAAAACAGGTCAGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 68352 -- 68851
CAAAAATTGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATG
AAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACA
Found at i:68411 original size:19 final size:17
Alignment explanation
Indices: 68387--68434 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
68377 ACCATACCAA
68387 AAAGGTCAGGACTGTCTTG
1 AAAGGTCAGGACT-TC-TG
*
68406 AAAGGTCAAGAC-TCTG
1 AAAGGTCAGGACTTCTG
68422 AAAGGTCAGGACT
1 AAAGGTCAGGACT
68435 AATGAGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 13 0.50
17 2 0.08
19 11 0.42
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (17 bp):
AAAGGTCAGGACTTCTG
Left flanking sequence: Indices 67887 -- 68386
AGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTCAGAACTT
TCTTGAAAGGTAAGGACTCTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTG
AAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACA
ACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTA
CTCACTTGACCAAAAATTGTATGTTATTAGTACTCACCATACCAA
Right flanking sequence: Indices 68435 -- 68934
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATTAGTACTCA
CCATACCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCA
Found at i:68544 original size:43 final size:43
Alignment explanation
Indices: 68481--68693 Score: 207
Period size: 43 Copynumber: 5.2 Consensus size: 43
68471 TTGTATGTCA
* * *
68481 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
68524 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** *
68562 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
68600 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
*
68643 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
68686 TCAGGACT
1 TCAGGACT
68694 TTTGATGGAA
Statistics
Matches: 136, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.08
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.04
41 1 0.01
42 4 0.03
43 92 0.68
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 67981 -- 68480
AATGAGTACTCACCATACCAAAACAGGTCAGAACTTTCTTGAAAGGTAAGGACTCTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTTTCCATATGC
CATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGTTATTA
GTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 68694 -- 69193
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAACATTAGTACTC
ACCATACCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACTCGCAAAGCGTA
GGGCTTTGCACAAAGCACTCGCAAAGCTTTGCGTTAGGGCTTTGCTCGCTCGGCTAAGCTATTTC
ATAACCTTCGCTTTCCTTAACCAGCTGACTTTCATAAAGCCTCCCTTTCCTTATAGTTCGACTAA
GTGACTTCGTCACCCTTAACGTACTTGTTTCGTACTTTCTCTGCCTTCGCCACTTCAAACAAACA
TCCCGGGCCTCTTTTTTTTGTTGAATTAGAAAGAACGGGACGGGG
Found at i:68602 original size:19 final size:19
Alignment explanation
Indices: 68580--68650 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
68570 GATTCTTCTG
68580 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
68599 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
*
68622 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCAAA
*
68642 GTCAGGACT
1 GTCAAGACT
68651 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 68080 -- 68579
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGA
CAACAAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAG
TACTCACTTGACCAAAAATTGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTT
GAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 68651 -- 69150
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTATACCAACATTAGTACTCACCATACCCAATGGCAATTGTA
TGCCATTAGTGTTTCCACAAATCATAAGCACTCGCAAAGCGTAGGGCTTTGCACAAAGCACTCGC
AAAGCTTTGCGTTAGGGCTTTGCTCGCTCGGCTAAGCTATTTCATAACCTTCGCTTTCCTTAACC
AGCTGACTTTCATAAAGCCTCCCTTTCCTTATAGTTCGACTAAGTGACTTCGTCACCCTTAACGT
ACTTGTTTCGTACTTTCTCTGCCTTCGCCACTTCAAACAAACATC
Found at i:68631 original size:24 final size:24
Alignment explanation
Indices: 68599--68675 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
68589 GTCTTTCAAA
*
68599 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
* *
68623 GTCAAGACTG-TCTT-TC--ACA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
68642 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
68666 GTCAAGACTG
1 GTCAAGACTG
68676 TCTTGAAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 5 0.13
24 17 0.45
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 68099 -- 68598
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTA
CTTTCCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTCACTTGACCAAAAAT
TGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAA
Right flanking sequence: Indices 68676 -- 69175
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
ATACCAACATTAGTACTCACCATACCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCAT
AAGCACTCGCAAAGCGTAGGGCTTTGCACAAAGCACTCGCAAAGCTTTGCGTTAGGGCTTTGCTC
GCTCGGCTAAGCTATTTCATAACCTTCGCTTTCCTTAACCAGCTGACTTTCATAAAGCCTCCCTT
TCCTTATAGTTCGACTAAGTGACTTCGTCACCCTTAACGTACTTGTTTCGTACTTTCTCTGCCTT
CGCCACTTCAAACAAACATCCCGGGCCTCTTTTTTTTGTTGAATT
Found at i:68857 original size:28 final size:28
Alignment explanation
Indices: 68825--68879 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
68815 TTGCAATTGT
*
68825 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTATACAAACAA
*
68853 ATGCCATTAGTACTCACTATACCAACA
1 ATGCCATTAGTACTCACTATACAAACA
68880 TTAGTACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.25
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTATACAAACAA
Left flanking sequence: Indices 68325 -- 68824
AACAAATGCCATTAGTACTCACTTGACCAAAAATTGTATGTTATTAGTACTCACCATACCAAAAA
GGTCAGGACTGTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGAC
TAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 68880 -- 69379
TTAGTACTCACCATACCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACTCG
CAAAGCGTAGGGCTTTGCACAAAGCACTCGCAAAGCTTTGCGTTAGGGCTTTGCTCGCTCGGCTA
AGCTATTTCATAACCTTCGCTTTCCTTAACCAGCTGACTTTCATAAAGCCTCCCTTTCCTTATAG
TTCGACTAAGTGACTTCGTCACCCTTAACGTACTTGTTTCGTACTTTCTCTGCCTTCGCCACTTC
AAACAAACATCCCGGGCCTCTTTTTTTTGTTGAATTAGAAAGAACGGGACGGGGGGATGAAAGAA
AAAGAAAGGGATCAGGGGGCTTGATGATCGGATAAAGGGAAGGGGCGTGGTTGGTGTCTCACTTG
GTTGGTGGGGGAACCCGGGGGACGACCCGCTTCATTCCCATCAGAAATCGCCAACATGAACACAA
ACGAAAGATGGAATTGCGTATAGAAACAAAAACGAACCACTGACT
Found at i:68881 original size:21 final size:21
Alignment explanation
Indices: 68857--68896 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
68847 AAACAAATGC
*
68857 CATTAGTACTCACTATACCAA
1 CATTAGTACTCACCATACCAA
68878 CATTAGTACTCACCATACC
1 CATTAGTACTCACCATACC
68897 CAATGGCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.33, G:0.05, T:0.28
Consensus pattern (21 bp):
CATTAGTACTCACCATACCAA
Left flanking sequence: Indices 68357 -- 68856
ATTGTATGTTATTAGTACTCACCATACCAAAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGAC
TCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGC
Right flanking sequence: Indices 68897 -- 69396
CAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACTCGCAAAGCGTAGGGCTTTG
CACAAAGCACTCGCAAAGCTTTGCGTTAGGGCTTTGCTCGCTCGGCTAAGCTATTTCATAACCTT
CGCTTTCCTTAACCAGCTGACTTTCATAAAGCCTCCCTTTCCTTATAGTTCGACTAAGTGACTTC
GTCACCCTTAACGTACTTGTTTCGTACTTTCTCTGCCTTCGCCACTTCAAACAAACATCCCGGGC
CTCTTTTTTTTGTTGAATTAGAAAGAACGGGACGGGGGGATGAAAGAAAAAGAAAGGGATCAGGG
GGCTTGATGATCGGATAAAGGGAAGGGGCGTGGTTGGTGTCTCACTTGGTTGGTGGGGGAACCCG
GGGGACGACCCGCTTCATTCCCATCAGAAATCGCCAACATGAACACAAACGAAAGATGGAATTGC
GTATAGAAACAAAAACGAACCACTGACTTCTATTCTCGGAGCGGA
Found at i:77188 original size:28 final size:28
Alignment explanation
Indices: 77148--77268 Score: 226
Period size: 28 Copynumber: 4.3 Consensus size: 28
77138 GTTGATGGAA
77148 AATGGCATTTGTTTGT-ACAGTGAGTACT
1 AATGGCATTTGTTTGTCA-AGTGAGTACT
77176 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
77204 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
77232 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
77260 AATGGCATT
1 AATGGCATT
77269 GAATTGCAAT
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
28 91 0.99
29 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.39
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 76648 -- 77147
CATTGATTTCGTCCGCTTCCACCGTTCCTCCCAAAAAGCAAGGCTTGACGAGCGCAGATGAGGAA
GCGGGAGCAAGAAAACCAAGAATCTATTTCAGAACCTTCTATCTACTTCAGGGGCAAAGAGAGGC
GCTTTCGCTACTGAGAAAGCGAACGGTCAGCGCGAAGGTTCCAGACTGAGCCGAGCGTTAGCGAA
GCGGAACGAAGCGTCGGTTCGGAGCTGACTTTCTTTGATGCGGCGCCTCGGTAGCGAAGCACCCT
AATAAGGAAGCGTCGGTAGCAAAGCTGACAACGCGTCGCGTTAGCGAAGCGAACGTCACGAGATT
AGATTAGCAAAGCCCAAAAAGCCCTCGCAAAGCGAAGCAAAGCCCTCTTTGAAAGCCAAAGCGAA
GCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGC
ATTTGTTTTGTTTAATGTGAGAGTCAGCACTCATTGTTGATGGAA
Right flanking sequence: Indices 77269 -- 77768
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
Found at i:77304 original size:24 final size:24
Alignment explanation
Indices: 77276--77321 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
77266 ATTGAATTGC
77276 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
77300 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
77322 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 76776 -- 77275
GCGCTTTCGCTACTGAGAAAGCGAACGGTCAGCGCGAAGGTTCCAGACTGAGCCGAGCGTTAGCG
AAGCGGAACGAAGCGTCGGTTCGGAGCTGACTTTCTTTGATGCGGCGCCTCGGTAGCGAAGCACC
CTAATAAGGAAGCGTCGGTAGCAAAGCTGACAACGCGTCGCGTTAGCGAAGCGAACGTCACGAGA
TTAGATTAGCAAAGCCCAAAAAGCCCTCGCAAAGCGAAGCAAAGCCCTCTTTGAAAGCCAAAGCG
AAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATG
GCATTTGTTTTGTTTAATGTGAGAGTCAGCACTCATTGTTGATGGAAAATGGCATTTGTTTGTAC
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 77322 -- 77821
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
Found at i:77463 original size:43 final size:42
Alignment explanation
Indices: 77416--77568 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
77406 ACCTTTCAAG
77416 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
77459 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
77494 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
77535 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
77569 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 76916 -- 77415
AGCGTCGGTAGCAAAGCTGACAACGCGTCGCGTTAGCGAAGCGAACGTCACGAGATTAGATTAGC
AAAGCCCAAAAAGCCCTCGCAAAGCGAAGCAAAGCCCTCTTTGAAAGCCAAAGCGAAGCGAGTGT
GCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTT
TGTTTAATGTGAGAGTCAGCACTCATTGTTGATGGAAAATGGCATTTGTTTGTACAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 77569 -- 78068
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:77674 original size:19 final size:19
Alignment explanation
Indices: 77646--77721 Score: 80
Period size: 19 Copynumber: 3.7 Consensus size: 19
77636 CTTCCATAAT
77646 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
77665 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
*
77688 TGAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
77708 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
77722 TTGGTAAGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 26 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 13 0.28
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 77146 -- 77645
AAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 77722 -- 78221
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
Found at i:77737 original size:43 final size:42
Alignment explanation
Indices: 77645--77881 Score: 183
Period size: 43 Copynumber: 5.8 Consensus size: 42
77635 CCTTCCATAA
*** *
77645 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
*
77688 TGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * * *
77731 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
77769 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* ** *
77807 TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGG
*
77850 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTT
77882 CCATTTTTGG
Statistics
Matches: 153, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
33 11 0.07
37 3 0.02
38 21 0.14
39 3 0.02
41 19 0.12
42 1 0.01
43 92 0.60
44 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 77145 -- 77644
GAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTG
CAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 77882 -- 78381
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAAT
Found at i:78009 original size:43 final size:42
Alignment explanation
Indices: 77962--78114 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
77952 ACCTTTCAAG
77962 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
78005 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
78040 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
78081 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
78115 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 77462 -- 77961
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 78115 -- 78614
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATT
CCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTT
CAAGATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCTGT
TCTCATAGCGATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGTG
CTAATGCTGAGCCAAGGACGCTCCGCGTTATCTTTATATATAAGC
Found at i:78098 original size:298 final size:284
Alignment explanation
Indices: 77434--78047 Score: 713
Period size: 291 Copynumber: 2.1 Consensus size: 284
77424 GATCTTTTTG
* * * *
77434 GTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
1 GTAAGATCAGTCCTGAC--TCAAATA-AGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCT
* *
77499 TGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
63 TGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
*
77564 ACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
128 ACTGATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
* *
77629 TCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTC
193 TCCTGTCCTTCCATAATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
** *
77694 CTGACCTTTCAAGACAGTCTTGACCTTTTTG
258 CTGACCTTGAAAGACAGTCTTGACC----TA
* * * *
77725 GTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
1 GTAAGATCAGTCCTGA-C-TCAAATA-AGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCT
*
77790 TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
63 TGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
** ** * *
77855 ACTGATTTCAAGACAGTCTTGACCTTTCCATT-TTTGGTCAGGTGAGTACTAATGGCATACAATT
128 ACTGATGAC-AGACA--AATGA---GT-C-TTGTATGGTCAGGTGAGTACTAATGGCATACAATT
***
77919 GCAATTGGTCCTGTCCTTCCATCAA-AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
185 GCAATTGGTCCTGTCCTTCCAT-AATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-A
* *
77983 AG-GTCAGTCCTGA-CTGTGAAATACAGTCTTGACC-A
248 AGAATCAGTCCTGACCT-TGAAAGACAGTCTTGACCTA
*
78018 G-AAGAATCAGTCCTGA-TCAGAT-AGTCTTGA
1 GTAAG-ATCAGTCCTGACTCAAATAAGTCTTGA
78048 TCTTTTTGGT
Statistics
Matches: 286, Mismatches: 24, Indels: 29
0.84 0.07 0.09
Matches are distributed among these distances:
288 8 0.03
290 4 0.01
291 131 0.46
292 8 0.03
293 11 0.04
294 3 0.01
297 3 0.01
298 111 0.39
299 7 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (284 bp):
GTAAGATCAGTCCTGACTCAAATAAGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCTTGA
TCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACT
GATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATAATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTGAAAGACAGTCTTGACCTA
Left flanking sequence: Indices 76934 -- 77433
GACAACGCGTCGCGTTAGCGAAGCGAACGTCACGAGATTAGATTAGCAAAGCCCAAAAAGCCCTC
GCAAAGCGAAGCAAAGCCCTCTTTGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAA
CACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTTGTTTTGTTTAATGTGAGAGTCA
GCACTCATTGTTGATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTG
Right flanking sequence: Indices 78048 -- 78547
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTT
TTCAAGATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCT
GTTCTCATAGCGATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGT
Found at i:78149 original size:19 final size:19
Alignment explanation
Indices: 78122--78202 Score: 72
Period size: 19 Copynumber: 4.0 Consensus size: 19
78112 TGATGACATA
* *
78122 CAAATGAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
78141 CAAAAGAGTCCTGACCTTT
1 CAAAAGAGTCCTGACCTTT
78160 CAAGAAGAATCAGTCCTGACCTTT
1 CAA-AAG----AGTCCTGACCTTT
* * *
78184 CAAGACAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
78203 TTGGTAAGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 32 0.62
20 3 0.06
23 1 0.02
24 16 0.31
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (19 bp):
CAAAAGAGTCCTGACCTTT
Left flanking sequence: Indices 77622 -- 78121
CAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 78203 -- 78702
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATCACCTTTCCATG
AGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCTGTTCTCATAGCGATAGCGAGGCGCT
TCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGTGCTAATGCTGAGCCAAGGACGCTC
CGCGTTATCTTTATATATAAGCAGTCAACTGAGTTCTGAACGGATCAGCTCCTTGGTAATGGCTC
AATCTATAGATAGAGAGCCCTATGATGGGAAACTACCACGTGAGG
Found at i:78199 original size:43 final size:43
Alignment explanation
Indices: 78128--78264 Score: 152
Period size: 43 Copynumber: 3.2 Consensus size: 43
78118 CATACAAATG
* * * *
78128 AGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
78171 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
**
78214 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTCAAGAAGAATC
78257 AGTCCTGA
1 AGTCCTGA
78265 TCAGATAGTC
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
42 5 0.06
43 69 0.90
44 3 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 77628 -- 78127
GTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 78265 -- 78764
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATCACCTTTCC
ATGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCTGTTCTCATAGCGATAGCGAGGC
GCTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGTGCTAATGCTGAGCCAAGGACG
CTCCGCGTTATCTTTATATATAAGCAGTCAACTGAGTTCTGAACGGATCAGCTCCTTGGTAATGG
CTCAATCTATAGATAGAGAGCCCTATGATGGGAAACTACCACGTGAGGTTTGGAGAGAGATGAGA
CCGGTTATATATAGAAAAGGGGGCGGATGCAAGCTTTTTCTTTCA
Found at i:78299 original size:81 final size:83
Alignment explanation
Indices: 78147--78326 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 83
78137 CTTTCAAAAG
*
78147 AGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGG
78212 TCAGTCCTGACTGTGAAAGAC
63 TCAGTCCTGACTGTGAAAGAC
* * *
78233 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTA
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
*
78296 GTCCTGACTTTGAAAGAC
66 GTCCTGACTGTGAAAGAC
78314 AGTCTTGACCTTT
1 AGTCTTGACCTTT
78327 TTGATAAGGT
Statistics
Matches: 89, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
81 56 0.63
82 2 0.02
86 31 0.35
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (83 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 77647 -- 78146
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAG
Right flanking sequence: Indices 78327 -- 78826
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATCACCTT
TCCATGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCTGTTCTCATAGCGATAGCGA
GGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGTGCTAATGCTGAGCCAAGG
ACGCTCCGCGTTATCTTTATATATAAGCAGTCAACTGAGTTCTGAACGGATCAGCTCCTTGGTAA
TGGCTCAATCTATAGATAGAGAGCCCTATGATGGGAAACTACCACGTGAGGTTTGGAGAGAGATG
AGACCGGTTATATATAGAAAAGGGGGCGGATGCAAGCTTTTTCTTTCATTTCCATAGCCGGCCAA
ATGACTACAGGATCATCGGTCTACTCCACCTCAATTCACCATTTC
Found at i:78335 original size:43 final size:42
Alignment explanation
Indices: 78169--78345 Score: 157
Period size: 43 Copynumber: 4.2 Consensus size: 42
78159 TCAAGAAGAA
* *
78169 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGATAAGG
* ** * *
78212 TCAGTCCTGACTGTGAAAGACAGTCTTGACC-TTTCAAGAAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGATAAG-G
* * * *
78255 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
78293 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
* *
78336 TGAGTACTGA
1 TCAGTCCTGA
78346 TGACATACAA
Statistics
Matches: 103, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
38 21 0.20
39 6 0.06
41 1 0.01
42 8 0.08
43 67 0.65
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 77669 -- 78168
CTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTC
AAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 78346 -- 78845
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAAGTCCTGACTTTTCAAGATTCCATCACCTTTCCATGAGCTAATGCCATT
CAAAGTTGCGAGTGCTTTGACCGTTCTGTTCTCATAGCGATAGCGAGGCGCTTCGAGTTAGCGAA
GCGCTGTAGTAGCGCCTTTGCCCTATGTGCTAATGCTGAGCCAAGGACGCTCCGCGTTATCTTTA
TATATAAGCAGTCAACTGAGTTCTGAACGGATCAGCTCCTTGGTAATGGCTCAATCTATAGATAG
AGAGCCCTATGATGGGAAACTACCACGTGAGGTTTGGAGAGAGATGAGACCGGTTATATATAGAA
AAGGGGGCGGATGCAAGCTTTTTCTTTCATTTCCATAGCCGGCCAAATGACTACAGGATCATCGG
TCTACTCCACCTCAATTCACCATTTCGAACCTTATACAGAAGGTT
Found at i:78343 original size:231 final size:226
Alignment explanation
Indices: 77945--78366 Score: 790
Period size: 231 Copynumber: 1.8 Consensus size: 226
77935 TTCCATCAAA
*
77945 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
78010 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
78075 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
78140 TCAAAAGAGTCCTGACCTTTCAAGAAGAATC
196 TCAAAAGAGTCCTGACCTTTCAAGAAGAATC
78171 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
78236 CTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
66 CTTGA-C---C-AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
78301 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
126 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
78366 A
191 A
78367 TGGTCATTCC
Statistics
Matches: 190, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
226 69 0.36
227 1 0.01
230 1 0.01
231 119 0.63
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (226 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCAAAAGAGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 77445 -- 77944
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 78367 -- 78866
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAAGTCC
TGACTTTTCAAGATTCCATCACCTTTCCATGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGAC
CGTTCTGTTCTCATAGCGATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGC
CCTATGTGCTAATGCTGAGCCAAGGACGCTCCGCGTTATCTTTATATATAAGCAGTCAACTGAGT
TCTGAACGGATCAGCTCCTTGGTAATGGCTCAATCTATAGATAGAGAGCCCTATGATGGGAAACT
ACCACGTGAGGTTTGGAGAGAGATGAGACCGGTTATATATAGAAAAGGGGGCGGATGCAAGCTTT
TTCTTTCATTTCCATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCCACCTCAATTCACC
ATTTCGAACCTTATACAGAAGGTTTCTCCGTACCAGCTTCTTCTA
Found at i:78435 original size:19 final size:17
Alignment explanation
Indices: 78392--78460 Score: 59
Period size: 19 Copynumber: 3.9 Consensus size: 17
78382 CATTCTCATT
78392 AGTCCTGACCTTT-CAG
1 AGTCCTGACCTTTCCAG
*
78408 AGTCTTGACCTTTCCAG
1 AGTCCTGACCTTTCCAG
* *
78425 AAAGTCCTGACTTTTCAAG
1 --AGTCCTGACCTTTCCAG
* *
78444 ATTCCATCACCTTTCCA
1 AGTCC-TGACCTTTCCA
78461 TGAGCTAATG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
16 12 0.29
17 7 0.17
18 8 0.20
19 14 0.34
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (17 bp):
AGTCCTGACCTTTCCAG
Left flanking sequence: Indices 77892 -- 78391
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCC
TGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACTGTGAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 78461 -- 78960
TGAGCTAATGCCATTCAAAGTTGCGAGTGCTTTGACCGTTCTGTTCTCATAGCGATAGCGAGGCG
CTTCGAGTTAGCGAAGCGCTGTAGTAGCGCCTTTGCCCTATGTGCTAATGCTGAGCCAAGGACGC
TCCGCGTTATCTTTATATATAAGCAGTCAACTGAGTTCTGAACGGATCAGCTCCTTGGTAATGGC
TCAATCTATAGATAGAGAGCCCTATGATGGGAAACTACCACGTGAGGTTTGGAGAGAGATGAGAC
CGGTTATATATAGAAAAGGGGGCGGATGCAAGCTTTTTCTTTCATTTCCATAGCCGGCCAAATGA
CTACAGGATCATCGGTCTACTCCACCTCAATTCACCATTTCGAACCTTATACAGAAGGTTTCTCC
GTACCAGCTTCTTCTACATATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGGCTCTTTCTGGT
CAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACC
Found at i:83964 original size:24 final size:23
Alignment explanation
Indices: 83936--83984 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
83926 GCATTGGTTG
* *
83936 ATGGATAATGGCATCTTTCTTGGT
1 ATGGAAAATGGCATCTGT-TTGGT
83960 ATGGAAAATGGCATCTGTTTGGT
1 ATGGAAAATGGCATCTGTTTGGT
83983 AT
1 AT
83985 AGTGAGTACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (23 bp):
ATGGAAAATGGCATCTGTTTGGT
Left flanking sequence: Indices 83436 -- 83935
GCCCTCAGTCCCATGTCTCGTAGACCCGCGCGCAATCAATATGGAAAGGCCCGGCGGATCGGTTG
AAATCAAGATCGGGCTCTTCGGGATCGGCTAGGTGATCGACGAGTGAGTGTGAAGCATACCAAAA
ACCACATCAAAGCCATCTTTCAAGTTCAAGCCCGTCTTCCTTCTTCAAGGAGAATGCCTAGAAAG
GGGGACGAAGCATGGCAGCACGAGGCCCCTACTTCTTAAAGCAAGACAAGACCCATCAGGCGAAT
CAAAAGGCTTTTTTTTGGCTATGGTACAGACCGAACGAATTCGGTTTGGAACCCTATTGGGTTTG
ATTCCGCCTACAGCACCTGACCCCGGGCAGGGCCTTCGTTACCGCAACAACCTGCAAAAAAATCT
TCTTTCCTCAACGTCTAAAAACATTGAAAAGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCA
TTGCAATTGTCTTTCTCTTCAATGAAACACTAATGGCATTGGTTG
Right flanking sequence: Indices 83985 -- 84484
AGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTG
CAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAA
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
Found at i:84039 original size:28 final size:28
Alignment explanation
Indices: 84007--84107 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
83997 TGTTGGTATG
*
84007 GTGAGCACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
84035 GTGAGTACTAATGGCATTTGTTTGT-CAA
1 GTGAGTACTAATGGCATTTGTTTGTAC-A
84063 GTGAGTACTAATGGCATTTGTTTGTACA
1 GTGAGTACTAATGGCATTTGTTTGTACA
84091 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
84108 ACAATTGCAA
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 68 0.97
29 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.37
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTACA
Left flanking sequence: Indices 83507 -- 84006
AGATCGGGCTCTTCGGGATCGGCTAGGTGATCGACGAGTGAGTGTGAAGCATACCAAAAACCACA
TCAAAGCCATCTTTCAAGTTCAAGCCCGTCTTCCTTCTTCAAGGAGAATGCCTAGAAAGGGGGAC
GAAGCATGGCAGCACGAGGCCCCTACTTCTTAAAGCAAGACAAGACCCATCAGGCGAATCAAAAG
GCTTTTTTTTGGCTATGGTACAGACCGAACGAATTCGGTTTGGAACCCTATTGGGTTTGATTCCG
CCTACAGCACCTGACCCCGGGCAGGGCCTTCGTTACCGCAACAACCTGCAAAAAAATCTTCTTTC
CTCAACGTCTAAAAACATTGAAAAGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGCAA
TTGTCTTTCTCTTCAATGAAACACTAATGGCATTGGTTGATGGATAATGGCATCTTTCTTGGTAT
GGAAAATGGCATCTGTTTGGTATAGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 84108 -- 84607
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
Found at i:84269 original size:95 final size:98
Alignment explanation
Indices: 84091--84270 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
84081 TGTTTGTACA
* *
84091 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
84156 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
84190 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
84251 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
84271 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 83591 -- 84090
TCAAGCCCGTCTTCCTTCTTCAAGGAGAATGCCTAGAAAGGGGGACGAAGCATGGCAGCACGAGG
CCCCTACTTCTTAAAGCAAGACAAGACCCATCAGGCGAATCAAAAGGCTTTTTTTTGGCTATGGT
ACAGACCGAACGAATTCGGTTTGGAACCCTATTGGGTTTGATTCCGCCTACAGCACCTGACCCCG
GGCAGGGCCTTCGTTACCGCAACAACCTGCAAAAAAATCTTCTTTCCTCAACGTCTAAAAACATT
GAAAAGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGCAATTGTCTTTCTCTTCAATGA
AACACTAATGGCATTGGTTGATGGATAATGGCATCTTTCTTGGTATGGAAAATGGCATCTGTTTG
GTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 84271 -- 84770
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
Found at i:84300 original size:43 final size:43
Alignment explanation
Indices: 84253--84451 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 43
84243 CTGACCTTTC
* *
84253 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
84296 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
84339 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * *
84372 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
84415 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
84452 TGACATACAA
Statistics
Matches: 126, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 20 0.16
39 3 0.02
41 1 0.01
43 86 0.68
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 83753 -- 84252
TGGGTTTGATTCCGCCTACAGCACCTGACCCCGGGCAGGGCCTTCGTTACCGCAACAACCTGCAA
AAAAATCTTCTTTCCTCAACGTCTAAAAACATTGAAAAGCGAGTGCTTTCTGAAAGAAGGGAATG
GATGGTCATTGCAATTGTCTTTCTCTTCAATGAAACACTAATGGCATTGGTTGATGGATAATGGC
ATCTTTCTTGGTATGGAAAATGGCATCTGTTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGC
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 84452 -- 84951
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACT
GTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
Found at i:84309 original size:19 final size:19
Alignment explanation
Indices: 84282--84352 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
84272 TGGTCAGGTT
84282 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
84301 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
84325 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
84344 AGTCTTGAC
1 AGTCCTGAC
84353 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 83782 -- 84281
CCCGGGCAGGGCCTTCGTTACCGCAACAACCTGCAAAAAAATCTTCTTTCCTCAACGTCTAAAAA
CATTGAAAAGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGCAATTGTCTTTCTCTTCA
ATGAAACACTAATGGCATTGGTTGATGGATAATGGCATCTTTCTTGGTATGGAAAATGGCATCTG
TTTGGTATAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 84353 -- 84852
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAG
Found at i:84522 original size:16 final size:16
Alignment explanation
Indices: 84498--84528 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84488 CATTCTCATT
84498 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
84514 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
84529 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 83998 -- 84497
GTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 84529 -- 85028
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
Found at i:84583 original size:43 final size:43
Alignment explanation
Indices: 84498--84622 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 43
84488 CATTCTCATT
*** *
84498 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
84538 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
84581 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGT
84623 GAGTACTAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 4 0.05
43 51 0.69
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 83998 -- 84497
GTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 84623 -- 85122
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:84711 original size:180 final size:168
Alignment explanation
Indices: 84354--84684 Score: 391
Period size: 180 Copynumber: 1.9 Consensus size: 168
84344 AGTCTTGACC
* * *
84354 AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
1 AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
* *
84419 CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
66 CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTCCT
* * *
84484 CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCA
128 C-A-CA-T-TAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
*
84529 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
* * *
84594 AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG-CA-ATTGGTCCTG
61 AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATA-TGGTCAT-
84657 TCCTTC-CA-TAATCAGTCCTGACCTTTCA
124 TCC-TCACATTAATCAGTCCTGACCTTTCA
84685 AGAAGAATGA
Statistics
Matches: 137, Mismatches: 11, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
172 18 0.13
175 20 0.15
176 6 0.04
177 4 0.03
178 2 0.01
179 2 0.01
180 85 0.62
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (168 bp):
AGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATATGGTCATTCCTCAC
ATTAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCA
Left flanking sequence: Indices 83854 -- 84353
AAGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGCAATTGTCTTTCTCTTCAATGAAAC
ACTAATGGCATTGGTTGATGGATAATGGCATCTTTCTTGGTATGGAAAATGGCATCTGTTTGGTA
TAGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATT
GCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
Right flanking sequence: Indices 84685 -- 85184
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
Found at i:85064 original size:19 final size:19
Alignment explanation
Indices: 85036--85106 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
85026 CTTCCATAAT
85036 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
85055 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
85073 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
85093 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
85107 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 84536 -- 85035
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 85107 -- 85606
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTG
Found at i:85084 original size:38 final size:38
Alignment explanation
Indices: 85033--85163 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
85023 GTCCTTCCAT
85033 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
85071 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* ** *
85115 -GTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
85152 AATCAGTCCTGA
1 AATCAGTCCTGA
85164 TCAGATAGTC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.56
43 29 0.37
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 84533 -- 85032
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 85164 -- 85663
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTA
Found at i:85119 original size:286 final size:290
Alignment explanation
Indices: 84789--85358 Score: 929
Period size: 286 Copynumber: 2.0 Consensus size: 290
84779 TTCCATCAAA
* *
84789 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGA-CTGTGAAAGACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAG
84853 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
* *
84918 TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TT
130 TTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT
*
84978 GTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCC
195 -TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCC
85042 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
258 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
*
85075 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
85140 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
** ** *
85205 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCA
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCCA
*
85270 TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
193 TTTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
85335 TGACCTTTCAAGACAGTCTTGACC
258 TGACCTTTCAAGACAGTCTTGACC
85359 TTTTTGGTAA
Statistics
Matches: 262, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
286 165 0.63
287 6 0.02
289 3 0.01
292 1 0.00
293 83 0.32
294 4 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (290 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCAGAAGAATC
Left flanking sequence: Indices 84289 -- 84788
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 85359 -- 85858
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGT
GAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
Found at i:85139 original size:43 final size:42
Alignment explanation
Indices: 85073--85266 Score: 158
Period size: 43 Copynumber: 4.8 Consensus size: 42
85063 ACCAGAAGAA
**
85073 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
85116 TCAGTCCTGACCTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
85154 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
85192 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
85235 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
85267 CCATTTTTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 3 0.03
38 21 0.18
39 3 0.03
41 21 0.18
43 59 0.50
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 84573 -- 85072
GTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 85267 -- 85766
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATA
ATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTT
GTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
Found at i:85215 original size:76 final size:78
Alignment explanation
Indices: 85035--85222 Score: 265
Period size: 76 Copynumber: 2.4 Consensus size: 78
85025 CCTTCCATAA
*
85035 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCT
85099 TGACCTTTTTGGTAAGG
62 TGACCTTTTTGGTAAGG
* * * *
85116 TCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGAT
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
85179 CTTTTTGGTAAGG
66 CTTTTTGGTAAGG
*
85192 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACC
85223 TTTTTGATAA
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
76 52 0.53
77 2 0.02
80 3 0.03
81 41 0.42
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (78 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGAC
CTTTTTGGTAAGG
Left flanking sequence: Indices 84535 -- 85034
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAAGACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 85223 -- 85722
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGG
TATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
Found at i:85391 original size:43 final size:42
Alignment explanation
Indices: 85330--85499 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
85320 TTCCATCAAA
**
85330 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
85373 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
85411 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
85449 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
85492 AGTACTGA
1 AGTCCTGA
85500 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 84830 -- 85329
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 85500 -- 85999
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATG
TTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
Found at i:85670 original size:28 final size:28
Alignment explanation
Indices: 85638--85767 Score: 235
Period size: 28 Copynumber: 4.6 Consensus size: 28
85628 TGTTGGTATG
*
85638 GTGAGCACTAATGGCATTTGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
85666 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
85694 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
85722 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
85750 GTGAGTACTAATGGCATT
1 GTGAGTACTAATGGCATT
85768 GAATTGCAAT
Statistics
Matches: 100, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
28 99 0.99
29 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 85138 -- 85637
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTC
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAA
TGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATG
Right flanking sequence: Indices 85768 -- 86267
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
CTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
Found at i:85803 original size:24 final size:24
Alignment explanation
Indices: 85779--85863 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
85769 AATTGCAATG
*
85779 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
85803 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
* *
85822 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
85846 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
85864 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 85279 -- 85778
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCAC
CTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 85864 -- 86363
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
Found at i:85830 original size:19 final size:19
Alignment explanation
Indices: 85803--85877 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
85793 AAGAAGAATG
85803 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
85822 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
85846 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
85865 AGTCTTGACCTTT
1 AGTCCTGACCTTT
85878 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 85303 -- 85802
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 85878 -- 86377
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA
Found at i:85832 original size:43 final size:43
Alignment explanation
Indices: 85779--85917 Score: 172
Period size: 43 Copynumber: 3.2 Consensus size: 43
85769 AATTGCAATG
* *
85779 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*
85822 AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
*** * ** *
85865 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACCTTGAAATAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAGAC
85908 AGTCTTGACC
1 AGTCTTGACC
85918 AGAAGAATCA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 82 0.96
44 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 85279 -- 85778
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCAC
CTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 85918 -- 86417
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
Found at i:85969 original size:76 final size:78
Alignment explanation
Indices: 85803--85993 Score: 233
Period size: 76 Copynumber: 2.4 Consensus size: 78
85793 AAGAAGAATG
**
85803 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTGAAAGACAGTCTTGA-----CCAGAAGAATCAGTCCTGA-C--TCAAGACAGT
85868 CTTGACCTTTTTGGTAAGGTC
58 CTTGACCTTTTTGGTAAGGTC
* * *
85889 AGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
85952 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
*
85965 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTGAAAGACAGTCTTGACC
85994 TTTTTGATAA
Statistics
Matches: 97, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
76 52 0.54
77 2 0.02
81 19 0.20
86 24 0.25
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (78 bp):
AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 85303 -- 85802
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 85994 -- 86493
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTC
Found at i:85989 original size:43 final size:41
Alignment explanation
Indices: 85941--86037 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 41
85931 CTGATCAGAT
* * * *
85941 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-AAAGAC
*
85984 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
86025 AGTCTTGACCTTT
1 AGTCTTGACCTTT
86038 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTAAAGAC
Left flanking sequence: Indices 85441 -- 85940
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CGGAAAGTAGTCCTGTCCATAATGAGTCCTCACCTGTTTTGGTATGGTGAGTACTCATGTTGGTA
TGGTGAGCACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 86038 -- 86537
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGT
CAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGT
Found at i:86162 original size:43 final size:42
Alignment explanation
Indices: 86101--86270 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
86091 TTCCATCAAA
**
86101 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
86144 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
86182 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
86220 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
86263 AGTACTGA
1 AGTCCTGA
86271 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 85601 -- 86100
CACCTGTTTTGGTATGGTGAGTACTCATGTTGGTATGGTGAGCACTAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAG
AAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 86271 -- 86770
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAA
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATG
Found at i:86305 original size:19 final size:19
Alignment explanation
Indices: 86278--86401 Score: 86
Period size: 19 Copynumber: 6.0 Consensus size: 19
86268 TGATGACATA
* *
86278 CAAATGAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
86297 CAAAAGAGTCCTGACCTTT
1 CAAAAGAGTCCTGACCTTT
86316 CAAGAAGAATGAGTCCTGACCTTT
1 C---AA-AA-GAGTCCTGACCTTT
* * *
86340 CAAGACAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
86359 CAAGAAGAATCAGTCCTGACCTTT
1 CAA-AAG----AGTCCTGACCTTT
* * *
86383 CAAGACAGTCTTGACCTTT
1 CAAAAGAGTCCTGACCTTT
86402 TTGGTAAGGT
Statistics
Matches: 84, Mismatches: 11, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
19 45 0.54
20 2 0.02
21 2 0.02
22 2 0.02
23 3 0.04
24 30 0.36
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (19 bp):
CAAAAGAGTCCTGACCTTT
Left flanking sequence: Indices 85778 -- 86277
GAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Right flanking sequence: Indices 86402 -- 86901
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGG
Found at i:86334 original size:24 final size:24
Alignment explanation
Indices: 86280--86387 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 24
86270 ATGACATACA
*
86280 AATGAGTCTTGACCTTTC---AA-
1 AATGAGTCCTGACCTTTCAAGAAG
86300 AA-GAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
86323 AATGAGTCCTGACCTTTC---AAG
1 AATGAGTCCTGACCTTTCAAGAAG
* *
86344 -A-CAGTCTTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
*
86366 AATCAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
86388 CAGTCTTGAC
Statistics
Matches: 74, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
19 27 0.36
20 3 0.04
21 3 0.04
22 5 0.07
23 3 0.04
24 33 0.45
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 85780 -- 86279
GTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 86388 -- 86887
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCC
TGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
Found at i:86336 original size:43 final size:43
Alignment explanation
Indices: 86284--86695 Score: 366
Period size: 43 Copynumber: 9.7 Consensus size: 43
86274 CATACAAATG
* * * * *
86284 AGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
86327 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
86370 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** *
86413 AGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * *
86451 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-AAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA--TC
* *
86494 AGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
86535 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** *
86578 AGTCCTGA-CTGTGAAATACAGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * * *** * *
86621 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAG-GTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
*
86664 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
86696 TTGATAAGGT
Statistics
Matches: 301, Mismatches: 49, Indels: 38
0.78 0.13 0.10
Matches are distributed among these distances:
37 3 0.01
38 25 0.08
39 1 0.00
41 34 0.11
42 15 0.05
43 213 0.71
44 10 0.03
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 85784 -- 86283
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 86696 -- 87195
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
Found at i:86417 original size:86 final size:85
Alignment explanation
Indices: 86327--86695 Score: 480
Period size: 86 Copynumber: 4.4 Consensus size: 85
86317 AAGAAGAATG
*
86327 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
86392 CTTGACCTTTTTGGTAAGGTC
65 CTTGACCTTTTTGGTAAGGTC
* * * *
86413 AGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAGAATCAGTCCTGATCTTTCAAGATAGT
1 AGTCCTGA-CTTTAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
* *****
86473 CTTGATCTTTCAAAAAAGGTC
65 CTTGACCTTTTTGGTAAGGTC
* * *
86494 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTC
1 AGTCCTGACTTTAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
86558 TTGACCTTTTTGGTAAGGTC
66 TTGACCTTTTTGGTAAGGTC
* * * *
86578 AGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGT
1 AGTCCTGACT-TTAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
* *
86643 CTTGATCTTTTTGGTAAGGTT
65 CTTGACCTTTTTGGTAAGGTC
86664 AGTCCTGACTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACTTT-AAAGACAGTCTTGACCTTT
86696 TTGATAAGGT
Statistics
Matches: 240, Mismatches: 35, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
79 14 0.06
80 1 0.00
81 51 0.21
82 1 0.00
83 1 0.00
84 50 0.21
85 3 0.01
86 119 0.50
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (85 bp):
AGTCCTGACTTTAAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 85827 -- 86326
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGT
CCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 86696 -- 87195
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTC
AAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
GATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
Found at i:86526 original size:19 final size:19
Alignment explanation
Indices: 86502--86566 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
86492 TCAGTACTGA
86502 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
86521 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
86545 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
86564 TTT
1 TTT
86567 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 86002 -- 86501
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGA
Right flanking sequence: Indices 86567 -- 87066
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCT
TTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
Found at i:86755 original size:19 final size:19
Alignment explanation
Indices: 86728--86803 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 19
86718 CATACAAATG
* *
86728 AGTCTTGACCTTTCCAGAC
1 AGTCCTGACCTTTCAAGAC
*
86747 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
86771 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
86790 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
86804 CATTTTTGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 26 0.55
20 1 0.02
21 3 0.06
22 2 0.04
23 1 0.02
24 14 0.30
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 86228 -- 86727
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAA
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 86804 -- 87303
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
Found at i:86930 original size:43 final size:43
Alignment explanation
Indices: 86883--87035 Score: 121
Period size: 43 Copynumber: 3.8 Consensus size: 43
86873 ACCTTTCAAG
86883 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
** * * *
86926 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* *
86961 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
87002 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
87036 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 86383 -- 86882
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAG
TCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 87036 -- 87535
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCC
Found at i:87141 original size:19 final size:19
Alignment explanation
Indices: 87113--87183 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
87103 CTTCCATAAT
87113 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
* **
87132 CAGTCTTGACC--AGAAGAA
1 CAGTCCTGACCTTTCAAG-A
87150 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
87170 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
87184 TTGGTAAGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 33 0.80
20 1 0.02
21 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 86613 -- 87112
GAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCC
AGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 87184 -- 87683
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
Found at i:87161 original size:38 final size:38
Alignment explanation
Indices: 87110--87240 Score: 165
Period size: 38 Copynumber: 3.3 Consensus size: 38
87100 GTCCTTCCAT
87110 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
*
87148 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC-----AG-AAG
* **
87192 -GTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
87229 AATCAGTCCTGA
1 AATCAGTCCTGA
87241 TCAGATAGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
37 3 0.04
38 44 0.55
43 30 0.38
44 3 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (38 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
Left flanking sequence: Indices 86610 -- 87109
CAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 87241 -- 87740
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
Found at i:87186 original size:286 final size:290
Alignment explanation
Indices: 86866--87435 Score: 929
Period size: 286 Copynumber: 2.0 Consensus size: 290
86856 TTCCATCAAA
* *
86866 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAG
86930 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
* *
86995 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TT
130 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT
*
87055 GTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCC
195 -TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCC
87119 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
258 TGACCTTTCAAGACAGTCTTGACCAGAAGAATC
87152 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
*
87217 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
** ** *
87282 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCA
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCCA
*
87347 TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
193 TTTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
87412 TGACCTTTCAAGACAGTCTTGACC
258 TGACCTTTCAAGACAGTCTTGACC
87436 TTTTTGGTAA
Statistics
Matches: 262, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
286 165 0.63
287 6 0.02
289 3 0.01
292 1 0.00
293 83 0.32
294 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (290 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCAGAAGAATC
Left flanking sequence: Indices 86366 -- 86865
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAG
TACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 87436 -- 87935
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACA
Found at i:87213 original size:43 final size:42
Alignment explanation
Indices: 87150--87343 Score: 167
Period size: 43 Copynumber: 4.8 Consensus size: 42
87140 ACCAGAAGAA
**
87150 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
87193 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
87231 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
87269 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
87312 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
87344 CCATTTTTGG
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 21 0.17
39 3 0.02
41 21 0.17
43 60 0.50
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 86650 -- 87149
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
TGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 87344 -- 87843
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
Found at i:87216 original size:81 final size:76
Alignment explanation
Indices: 87112--87299 Score: 277
Period size: 76 Copynumber: 2.4 Consensus size: 76
87102 CCTTCCATAA
**
87112 TCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA----TC-AGACAGTCTT
87177 GACCTTTTTGGTAAGG
61 GACCTTTTTGGTAAGG
* *
87193 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
87258 TTTTGGTAAGG
66 TTTTGGTAAGG
* *
87269 TTAGTCCTGACTTTGAAAGACAGTCTTGACC
1 TCAGTCCTGACCTTGAAAGACAGTCTTGACC
87300 TTTTTGATAA
Statistics
Matches: 101, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
76 53 0.52
77 2 0.02
81 46 0.46
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (76 bp):
TCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCT
TTTTGGTAAGG
Left flanking sequence: Indices 86612 -- 87111
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
CAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 87300 -- 87799
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTG
ATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGAT
Found at i:87222 original size:19 final size:19
Alignment explanation
Indices: 87113--87223 Score: 55
Period size: 19 Copynumber: 5.6 Consensus size: 19
87103 CTTCCATAAT
**
87113 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTGAAAGA
* *
87132 CAGTCTTGACC-AG-AAGAA
1 CAGTCCTGACCTTGAAAG-A
**
87150 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTGAAAGA
* * *
87170 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACC---TT-G-AAAGA
87194 CAGTCCTGACCTTGAAAGA
1 CAGTCCTGACCTTGAAAGA
*
87213 CAGTCTTGACC
1 CAGTCCTGACC
87224 AGAAGAATCA
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 43 0.63
20 2 0.03
21 5 0.07
22 2 0.03
24 12 0.18
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (19 bp):
CAGTCCTGACCTTGAAAGA
Left flanking sequence: Indices 86613 -- 87112
GAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCC
AGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 87224 -- 87723
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
Found at i:87471 original size:43 final size:43
Alignment explanation
Indices: 87424--87581 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 43
87414 ACCTTTCAAG
87424 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
87467 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGATCTTTCAAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-CTGTGAA-AT
*
87507 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * * *
87548 ACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
87582 TGACATACAA
Statistics
Matches: 90, Mismatches: 14, Indels: 22
0.71 0.11 0.17
Matches are distributed among these distances:
37 3 0.03
38 20 0.22
39 5 0.06
40 2 0.02
41 2 0.02
42 5 0.06
43 50 0.56
44 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 86924 -- 87423
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 87582 -- 88081
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
Found at i:87542 original size:81 final size:81
Alignment explanation
Indices: 87407--87559 Score: 270
Period size: 81 Copynumber: 1.9 Consensus size: 81
87397 TTCCATCAAA
87407 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
*
87472 CTTGACCAGAAGAATC
66 ATTGACCAGAAGAATC
* * *
87488 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
87553 ATTGACC
66 ATTGACC
87560 TTTTTGATAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (81 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATTGACCAGAAGAATC
Left flanking sequence: Indices 86907 -- 87406
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 87560 -- 88059
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGAT
Found at i:87936 original size:113 final size:113
Alignment explanation
Indices: 87777--87982 Score: 369
Period size: 113 Copynumber: 1.8 Consensus size: 113
87767 CTGACTGTGA
87777 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
*
87842 TTCCAT-AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
66 TTCCATCAA-AAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
* *
87890 AAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
87955 TTCCATCAAAAGTCCTGACCTTTCAAGA
66 TTCCATCAAAAGTCCTGACCTTTCAAGA
87983 CAGTCTTGAT
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
113 87 0.98
114 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (113 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTC
Left flanking sequence: Indices 87277 -- 87776
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Right flanking sequence: Indices 87983 -- 88482
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGGACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGAC
TGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
Found at i:88026 original size:43 final size:42
Alignment explanation
Indices: 87965--88134 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
87955 TTCCATCAAA
**
87965 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* ** *
88008 AGTCCTGACTGTGAAAGACAGTATTGA-C----CAG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGATCTTTTTGGTAAG-GTC
* * *
88046 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
* * *
88084 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
*
88127 AGTACTGA
1 AGTCCTGA
88135 TGACATACAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
34 1 0.01
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 3 0.03
43 52 0.55
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 87465 -- 87964
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGT
CCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 88135 -- 88634
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGGACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTT
TTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
GAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTAT
Found at i:88240 original size:19 final size:19
Alignment explanation
Indices: 88212--88287 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
88202 CTTCCATAAT
88212 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
88231 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
88254 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
88274 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
88288 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 87712 -- 88211
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGGACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 88288 -- 88787
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAG
TCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGA
CAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGT
CAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTT
Found at i:88258 original size:24 final size:24
Alignment explanation
Indices: 88209--88273 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
88199 GTCCTTCCAT
88209 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
88230 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
88252 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
88274 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 87709 -- 88208
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGGACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 88274 -- 88773
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGAC
ATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAAT
Found at i:88303 original size:43 final size:42
Alignment explanation
Indices: 88211--88468 Score: 187
Period size: 43 Copynumber: 6.2 Consensus size: 42
88201 CCTTCCATAA
* *** *
88211 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
*
88254 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
88297 TTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
88340 TCAGTCCTGACTGTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
88378 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
88416 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
88459 TGAGTACTGA
1 TCAGTCCTGA
88469 TGACATACAA
Statistics
Matches: 174, Mismatches: 27, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
33 11 0.06
37 3 0.02
38 20 0.11
39 3 0.02
41 1 0.01
42 2 0.01
43 131 0.75
44 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 87711 -- 88210
TCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGGACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 88469 -- 88968
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGAC
ATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAG
AGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
Found at i:88326 original size:19 final size:19
Alignment explanation
Indices: 88299--88369 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
88289 TGGTAAGGTT
88299 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
* *
88318 AGTCTTGACCTTTTTGATAAGGT-C
1 AGTCCTGA-C--TGTGA-AA--TAC
88342 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
*
88361 AGTCTTGAC
1 AGTCCTGAC
88370 CAGAAGAATC
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.03
19 16 0.40
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 8 0.20
25 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTGTGAAATAC
Left flanking sequence: Indices 87799 -- 88298
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTATTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGGACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 88370 -- 88869
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAA
CAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTT
GGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGG
CATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAG
Found at i:88622 original size:19 final size:16
Alignment explanation
Indices: 88579--88624 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 16
88569 CATTCTCATT
88579 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
88595 AGTCTTGACCTTTCCAG
1 AGTCCTGACCTTT-CAG
88612 ACAGTCCTGACCT
1 --AGTCCTGACCT
88625 GTTTTGGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 12 0.48
17 3 0.12
19 10 0.40
ACGTcount: A:0.20, C:0.33, G:0.17, T:0.30
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 88079 -- 88578
AGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTCAGGTGAGGACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 88625 -- 89124
GTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACT
AATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
TTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTT
Found at i:88667 original size:28 final size:28
Alignment explanation
Indices: 88636--88762 Score: 156
Period size: 28 Copynumber: 4.6 Consensus size: 28
88626 TTTTGGTATG
* *
88636 GTGAGTACTAATGACATTGGTTTGT-ACA
1 GTGAGTACTAATGGCATTTGTTTGTCA-A
88664 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
88692 GTGAGTACTAATGGCATTTGTTTGTCAA
1 GTGAGTACTAATGGCATTTGTTTGTCAA
* *
88720 GTGAG-A-GACAT-ACAATTTG-TTGTCAA
1 GTGAGTACTA-ATGGC-ATTTGTTTGTCAA
88746 GTGAGTACTAATGGCAT
1 GTGAGTACTAATGGCAT
88763 ACAATTGCAA
Statistics
Matches: 87, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
26 14 0.16
27 13 0.15
28 59 0.68
29 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.35
Consensus pattern (28 bp):
GTGAGTACTAATGGCATTTGTTTGTCAA
Left flanking sequence: Indices 88136 -- 88635
GACATACAAATGAGTCTTGTATGGTCAGGTGAGGACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTT
TTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATG
Right flanking sequence: Indices 88763 -- 89262
ACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAG
Found at i:88856 original size:16 final size:16
Alignment explanation
Indices: 88835--88865 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
88825 CATTCTCATT
88835 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
88851 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
88866 AAAGAGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 88335 -- 88834
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
AGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 88866 -- 89365
AAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATC
Found at i:88873 original size:19 final size:19
Alignment explanation
Indices: 88835--88926 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 19
88825 CATTCTCATT
88835 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
88851 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
* *
88870 AGTCTTCACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
88894 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
88913 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
88927 CATTTTTGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
16 14 0.23
19 27 0.44
20 1 0.02
21 2 0.03
22 2 0.03
23 2 0.03
24 13 0.21
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 88335 -- 88834
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTG
TACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
AGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 88927 -- 89426
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTAT
GGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
Found at i:88904 original size:24 final size:22
Alignment explanation
Indices: 88849--88911 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
88839 CTGACCTTTC
88849 AGAGTCCTGACCTTTC---AAA
1 AGAGTCCTGACCTTTCAAGAAA
* *
88868 AGAGTCTTCACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAA-A
88891 ATGAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
88912 CAGTCTTGAC
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 14 0.40
22 2 0.06
23 2 0.06
24 17 0.49
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (22 bp):
AGAGTCCTGACCTTTCAAGAAA
Left flanking sequence: Indices 88349 -- 88848
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAA
TGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTC
CAGACAGTCCTGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTG
TTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTAT
GGAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 88912 -- 89411
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGT
AAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
AAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
Found at i:89053 original size:43 final size:43
Alignment explanation
Indices: 88989--89163 Score: 134
Period size: 43 Copynumber: 4.2 Consensus size: 43
88979 TTCCATCAAA
* *
88989 AGTCCTGACCTTT-CAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
* ** *
89032 AGTCCTGACTGTGAAATACAGTCTTGA-C----CAG-AAGAATC
1 AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAG-GTC
* *
89070 AGTCCTGATCTTTCAAGAT--AGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTGAA-ATACAGTCTTGATCTTTTTGGTAAGGTC
* * * *
89113 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
*
89156 AGTACTGA
1 AGTCCTGA
89164 TGACATACAA
Statistics
Matches: 102, Mismatches: 18, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
37 3 0.03
38 19 0.19
39 6 0.06
40 2 0.02
41 1 0.01
42 10 0.10
43 58 0.57
44 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (43 bp):
AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 88489 -- 88988
ACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCC
TGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTG
AGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGAC
TTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 89164 -- 89663
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTT
TCCAGAGAGTCCTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACT
AATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCAT
ATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACA
Found at i:89128 original size:81 final size:81
Alignment explanation
Indices: 88989--89141 Score: 261
Period size: 81 Copynumber: 1.9 Consensus size: 81
88979 TTCCATCAAA
*
88989 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
89054 CTTGACCAGAAGAATC
66 CTTGACCAGAAGAATC
* * * *
89070 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
89135 CTTGACC
66 CTTGACC
89142 TTTTTGATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
CTTGACCAGAAGAATC
Left flanking sequence: Indices 88489 -- 88988
ACCTTTCAAAACAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGA
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCC
TGACCTGTTTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTG
AGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGAC
TTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 89142 -- 89641
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTTCCATAATTGTGCAATTATGGAAGGCATAC
AATTTGTTGTATGGTCAACACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTTGTTT
GTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTT
Found at i:89287 original size:24 final size:19
Alignment explanation
Indices: 89241--89316 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
89231 CTTCCATAAT
89241 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
89260 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
89283 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
89303 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
89317 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 88741 -- 89240
GTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATGG
AATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGA
GTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAG
AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 89317 -- 89816
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTTCCATAATTG
TGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTTGTTTGTACAGTGA
GTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTT
GTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCT
TTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTT
Found at i:89330 original size:43 final size:42
Alignment explanation
Indices: 89240--89454 Score: 164
Period size: 43 Copynumber: 5.2 Consensus size: 42
89230 CCTTCCATAA
*** *
89240 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-G
89283 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
** * *
89326 TCAGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
89364 TCAGTCCTGA---TC-AGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
89402 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
* *
89445 TGAGTACTGA
1 TCAGTCCTGA
89455 TGACATACAA
Statistics
Matches: 137, Mismatches: 21, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
33 12 0.09
37 3 0.02
38 21 0.15
39 3 0.02
41 1 0.01
42 2 0.01
43 92 0.67
44 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (42 bp):
TCAGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 88740 -- 89239
TGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAAAGAGTCCTGTATG
GAATCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAG
AGTCTTCACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 89455 -- 89954
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTTCCATAATTGTGCAATTA
TGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTTGTTTGTACAGTGAGTACTAAT
GGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAA
GTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAG
GGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAG
Found at i:89408 original size:76 final size:78
Alignment explanation
Indices: 89274--89432 Score: 241
Period size: 76 Copynumber: 2.0 Consensus size: 78
89264 CTTGACCTTT
89274 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
89339 TGAAAGACAGTCTTGA
63 TGAAAGACAGTCTTGA
* * * *
89355 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
89418 AAGACAGTCTTGA
66 AAGACAGTCTTGA
89431 CC
1 CC
89433 TTTTTGATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
76 53 0.72
77 2 0.03
81 19 0.26
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 88774 -- 89273
GAGTCCTGACCTTTCAAAAGAGTCCTGTATGGAATCTGACTTTTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCTTCACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 89433 -- 89932
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAG
TCCTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATT
TGTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGT
ACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTC
ATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGG
TGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
Found at i:89582 original size:28 final size:28
Alignment explanation
Indices: 89551--89748 Score: 185
Period size: 28 Copynumber: 7.4 Consensus size: 28
89541 TATGGTCAAC
*
89551 ACTAATGACATTTGTTTGT-ACAGTGAGT
1 ACTAATGGCATTTGTTTGTCA-AGTGAGT
89579 ACTAATGGCATTTTGTTTGT-ACAGTGAGT
1 ACTAATGGCA-TTTGTTTGTCA-AGTGAGT
*
89608 ACTAATGGCATATG---G--AA---AGT
1 ACTAATGGCATTTGTTTGTCAAGTGAGT
89628 ACTAATGGCATTT-TGTTGTCAAGTGAG-
1 ACTAATGGCATTTGT-TTGTCAAGTGAGT
* *
89655 A-GACAT-ACAATTTG-TTGTCAAGTGAGT
1 ACTA-ATGGC-ATTTGTTTGTCAAGTGAGT
89682 ACTAATGGCATTT-TGTTGTCAAGTGAGT
1 ACTAATGGCATTTGT-TTGTCAAGTGAGT
89710 ACTAATGGCATTTGTTTGTCAAGTGAGT
1 ACTAATGGCATTTGTTTGTCAAGTGAGT
89738 ACTAATGGCAT
1 ACTAATGGCAT
89749 ACAATTGTCA
Statistics
Matches: 144, Mismatches: 7, Indels: 38
0.76 0.04 0.20
Matches are distributed among these distances:
20 15 0.10
23 2 0.01
24 1 0.01
25 3 0.02
26 14 0.10
27 14 0.10
28 66 0.46
29 29 0.20
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (28 bp):
ACTAATGGCATTTGTTTGTCAAGTGAGT
Left flanking sequence: Indices 89051 -- 89550
AGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTTCCA
TAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAAC
Right flanking sequence: Indices 89749 -- 90248
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
Found at i:89707 original size:54 final size:55
Alignment explanation
Indices: 89625--89748 Score: 182
Period size: 54 Copynumber: 2.3 Consensus size: 55
89615 GCATATGGAA
89625 AGTACTAATGGCATTTTGTTGTCAAGTGAGAGAC-AT-ACAATTTG-TTGTCAAGTG
1 AGTACTAATGGCATTTTGTTGTCAAGTGAG-GACAATGAC-ATTTGTTTGTCAAGTG
* *
89679 AGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTTGTTGTCAAGTGAGGAC-AATGACATTTGTTTGTCAAGTG
89735 AGTACTAATGGCAT
1 AGTACTAATGGCAT
89749 ACAATTGTCA
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
53 2 0.03
54 30 0.47
55 7 0.11
56 25 0.39
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.36
Consensus pattern (55 bp):
AGTACTAATGGCATTTTGTTGTCAAGTGAGGACAATGACATTTGTTTGTCAAGTG
Left flanking sequence: Indices 89125 -- 89624
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTTCCATAATTGTGC
AATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTTGTTTGTACAGTGAGTA
CTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 89749 -- 90248
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTT
Found at i:89756 original size:28 final size:28
Alignment explanation
Indices: 89669--89758 Score: 126
Period size: 28 Copynumber: 3.2 Consensus size: 28
89659 ATACAATTTG
**
89669 TTGTCAAGTGAGTACTAATGGCATTTTG
1 TTGTCAAGTGAGTACTAATGGCATTTAA
**
89697 TTGTCAAGTGAGTACTAATGGCATTTGT
1 TTGTCAAGTGAGTACTAATGGCATTTAA
**
89725 TTGTCAAGTGAGTACTAATGGCATACAA
1 TTGTCAAGTGAGTACTAATGGCATTTAA
89753 TTGTCA
1 TTGTCA
89759 TGAGTCCTGA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (28 bp):
TTGTCAAGTGAGTACTAATGGCATTTAA
Left flanking sequence: Indices 89169 -- 89668
TACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAG
AGAGTCCTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGA
CATTTGTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTG
Right flanking sequence: Indices 89759 -- 90258
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGT
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAA
GAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATG
GTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGA
AGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGT
Found at i:89958 original size:19 final size:19
Alignment explanation
Indices: 89920--90015 Score: 99
Period size: 19 Copynumber: 4.9 Consensus size: 19
89910 CATTCTCATT
89920 AGTCCTGACCTTTC---AG
1 AGTCCTGACCTTTCAAAAG
89936 AGTCCTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAG
89955 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AA-AA-G
* *
89979 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAG
*
89998 AGTCTTGACCTTTCAAAA
1 AGTCCTGACCTTTCAAAA
90016 ATGGTGAGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
16 14 0.21
19 32 0.47
20 1 0.01
21 2 0.03
22 2 0.03
23 2 0.03
24 15 0.22
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAG
Left flanking sequence: Indices 89420 -- 89919
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGA
CCTTTCCAGAGAGTCCTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAA
CACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATG
GCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGA
GTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 90016 -- 90515
ATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGA
AGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGA
CCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCA
TTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAA
Found at i:89986 original size:24 final size:22
Alignment explanation
Indices: 89934--89996 Score: 87
Period size: 24 Copynumber: 2.9 Consensus size: 22
89924 CTGACCTTTC
89934 AGAGTCCTGACCTTTC---AAA
1 AGAGTCCTGACCTTTCAAGAAA
89953 AGAGTCCTGACCTTTCAAGAAGA
1 AGAGTCCTGACCTTTCAAGAA-A
89976 ATGAGTCCTGACCTTTCAAGA
1 A-GAGTCCTGACCTTTCAAGA
89997 CAGTCTTGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.41
22 2 0.05
23 2 0.05
24 19 0.49
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (22 bp):
AGAGTCCTGACCTTTCAAGAAA
Left flanking sequence: Indices 89434 -- 89933
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGT
CCTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTT
GTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTA
CTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATT
TTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCA
TGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACA
GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGT
GAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
Right flanking sequence: Indices 89997 -- 90496
CAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAG
TGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTA
ATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAA
GGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAAT
CATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGT
Found at i:90024 original size:43 final size:43
Alignment explanation
Indices: 89935--90016 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
89925 TGACCTTTCA
* *
89935 GAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAAT
1 GAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAAAAGAAT
* *
89978 GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAA
1 GAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAAAA
90017 TGGTGAGTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GAGTCCTGACCTTTCAAAACAGTCCTGACCTTTCAAAAAGAAT
Left flanking sequence: Indices 89435 -- 89934
TTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTC
CTTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTTG
TTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTAC
TAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTT
TGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCAT
GAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTG
AGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCA
Right flanking sequence: Indices 90017 -- 90516
TGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGT
GAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAA
GAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCAT
TAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAAT
Found at i:90171 original size:28 final size:28
Alignment explanation
Indices: 90042--90161 Score: 240
Period size: 28 Copynumber: 4.3 Consensus size: 28
90032 GTTGATGGAA
90042 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90070 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90098 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90126 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90154 AATGGCAT
1 AATGGCAT
90162 ACAATTGTCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 89542 -- 90041
ATGGTCAACACTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAG
TACTAATGGCATATGGAAAGTACTAATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTG
TCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAA
GAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACA
GTATTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 90162 -- 90661
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAA
AATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTT
GTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAA
Found at i:90279 original size:43 final size:43
Alignment explanation
Indices: 90231--90314 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
90221 CTGATCTTTC
* * *
90231 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
90274 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
90315 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 89731 -- 90230
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAA
GAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
AATACAGTATTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 90315 -- 90814
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGAT
GGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATT
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACC
Found at i:90374 original size:19 final size:16
Alignment explanation
Indices: 90333--90363 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
90323 CATTCTCATT
90333 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
90349 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
90364 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 89833 -- 90332
TTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTTCTGA
CTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 90364 -- 90863
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTG
AGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGA
AGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTC
Found at i:90432 original size:19 final size:19
Alignment explanation
Indices: 90408--90485 Score: 84
Period size: 19 Copynumber: 3.8 Consensus size: 19
90398 CATTCTCATT
*
90408 AGTCCTGACCTTTCCAGAG
1 AGTCCTGACCTTTCAAGAG
90427 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-G
*
90451 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAG
*
90470 AGTCTTGACCTTTCAA
1 AGTCCTGACCTTTCAA
90486 AAATGGTGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
19 29 0.57
20 1 0.02
21 3 0.06
22 2 0.04
23 1 0.02
24 15 0.29
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAG
Left flanking sequence: Indices 89908 -- 90407
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGAT
GGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATT
GTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTC
AAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 90486 -- 90985
AAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAA
GAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCCAGAGAATCCTGACCTTTCCATAATTGCCTTTCTTTTCCATAACCTT
TCCATTAATGATACTGAAGGTCACTGATTCAGGTCAGACAAATCC
Found at i:90472 original size:472 final size:472
Alignment explanation
Indices: 89936--90912 Score: 1927
Period size: 472 Copynumber: 2.1 Consensus size: 472
89926 GACCTTTCAG
* *
89936 AGTCCTGACCTTTCAAAAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
90001 CTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAG
66 CTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAG
90066 TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
131 TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
90131 CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
196 CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
90196 CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
261 CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
90261 GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
326 GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
90326 TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
391 TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
90391 CCTCAATCATTCTCATT
456 CCTCAATCATTCTCATT
90408 AGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
90473 CTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAG
66 CTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAG
90538 TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
131 TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
90603 CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
196 CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
90668 CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
261 CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
90733 GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
326 GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
90798 TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
391 TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
90863 CCTCAATCATTCTCATT
456 CCTCAATCATTCTCATT
*
90880 AGTCCTGACCTTTCCAGAGAATCCTGACCTTTC
1 AGTCCTGACCTTTCCAGAGAGTCCTGACCTTTC
90913 CATAATTGCC
Statistics
Matches: 502, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
472 502 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (472 bp):
AGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAG
TACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGT
CCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATT
CCTCAATCATTCTCATT
Left flanking sequence: Indices 89436 -- 89935
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCC
TTCCATAATTGTGCAATTATGGAAGGCATACAATTTGTTGTATGGTCAACACTAATGACATTTGT
TTGTACAGTGAGTACTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACT
AATGGCATTTTGTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATTTT
GTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGA
GTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 90913 -- 91412
CATAATTGCCTTTCTTTTCCATAACCTTTCCATTAATGATACTGAAGGTCACTGATTCAGGTCAG
ACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTATGCCTGGAAAAGA
CAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCA
GGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG
Found at i:90643 original size:28 final size:28
Alignment explanation
Indices: 90514--90633 Score: 240
Period size: 28 Copynumber: 4.3 Consensus size: 28
90504 GTTGATGGAA
90514 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90542 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90570 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90598 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
90626 AATGGCAT
1 AATGGCAT
90634 ACAATTGTCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.38
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 90014 -- 90513
AAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAA
GAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCT
CATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 90634 -- 91133
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAATCCTGACCTTTCCATAATTGCCTTTCTTTTCCATAACCTTTCCATTAATGATACTGAA
GGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTC
ATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAA
AGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGA
Found at i:90751 original size:43 final size:43
Alignment explanation
Indices: 90703--90786 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
90693 CTGATCTTTC
* * *
90703 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
*
90746 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTT
90787 TCCTCAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 90203 -- 90702
TTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAAT
CATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 90787 -- 91286
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTT
CCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAATCCTGACCTTTCCATA
ATTGCCTTTCTTTTCCATAACCTTTCCATTAATGATACTGAAGGTCACTGATTCAGGTCAGACAA
ATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTATGCCTGGAAAAGACAGG
AGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
Found at i:90846 original size:19 final size:16
Alignment explanation
Indices: 90805--90835 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
90795 CATTCTCATT
90805 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
90821 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
90836 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 90305 -- 90804
TTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGG
TCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACT
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 90836 -- 91335
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAA
TCCTGACCTTTCCATAATTGCCTTTCTTTTCCATAACCTTTCCATTAATGATACTGAAGGTCACT
GATTCAGGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTAT
GCCTGGAAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAG
GACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCT
TTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
GTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCT
Found at i:91184 original size:16 final size:16
Alignment explanation
Indices: 91163--91193 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
91153 AGGACCCTTT
91163 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
91179 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
91194 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 90663 -- 91162
AGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCA
ATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAA
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAATCCTGACCTTTCCATAATTGCC
TTTCTTTTCCATAACCTTTCCATTAATGATACTGAAGGTCACTGATTCAGGTCAGACAAATCCTG
AAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTATGCCTGGAAAAGACAGGAGAAAT
TGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 91194 -- 91693
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAA
AGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGC
CATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTT
TCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACC
Found at i:91260 original size:43 final size:42
Alignment explanation
Indices: 91212--91309 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
91202 TGATTGAGGA
* * *
91212 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
91255 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
91297 AAAGATCAGAACT
1 AAAG-TCAGAACT
91310 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 90712 -- 91211
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGG
TCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAATCCTGA
CCTTTCCATAATTGCCTTTCTTTTCCATAACCTTTCCATTAATGATACTGAAGGTCACTGATTCA
GGTCAGACAAATCCTGAAAAGTGCTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTATGCCTGG
AAAAGACAGGAGAAATTGCAATTCTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 91310 -- 91809
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCA
TTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAA
TGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAAATGCCATTACCAAGAAG
ATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAACAAAAAAGGACAATTGTATGC
CATTCATGCTGACCCTGACCAAAGAGTTCATATCTTTGTCTGAGA
Found at i:91388 original size:28 final size:28
Alignment explanation
Indices: 91365--91484 Score: 240
Period size: 28 Copynumber: 4.3 Consensus size: 28
91355 TGACAATTGT
91365 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
91393 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
91421 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
91449 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
91477 ATGCCATT
1 ATGCCATT
91485 TTCCATCAAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 90865 -- 91364
TCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAATCCTGACCTTTCCATAATTGCCTTTCTTT
TCCATAACCTTTCCATTAATGATACTGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTG
CTGACCCTGACCAGAAAGGAAAGTTTGTCATTGTATGCCTGGAAAAGACAGGAGAAATTGCAATT
CTTGATAAAGGAAAGGATAAATTCTAGAAAGGTGAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 91485 -- 91984
TTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTTTCCGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAAC
AAAATGCCATTACCAAGAAGATGCCATTTTCCATCAAAATGAGTGCTGACTCTCACATGAATAAC
AAAAAAGGACAATTGTATGCCATTCATGCTGACCCTGACCAAAGAGTTCATATCTTTGTCTGAGA
TAAGCGCACTCGCAAAGCTCACATGCTTTGCGAGTGATTGCACAAAGAACTCGCAAAGCGAATCG
ACAAAGCACTCGCAAAGCGAAGCGTGAGGGTCGCTGGGGGCTTTGCTCGTGACATGACGTTGGGC
TACGCTTTGAATTGCATTAGGGCTTTGCTTATCAAAATGACATGA
Found at i:94713 original size:38 final size:37
Alignment explanation
Indices: 94627--94717 Score: 104
Period size: 32 Copynumber: 2.5 Consensus size: 37
94617 TAGTGTCCAT
94627 AATTGCAATTAGATGCCATTAATGCTGACCATACAACA
1 AATTGCAA-TAGATGCCATTAATGCTGACCATACAACA
*
94665 AATTG---T--ATGCCATTAGTGCTGACCATATC-ACA
1 AATTGCAATAGATGCCATTAATGCTGACCATA-CAACA
94697 AATTGCAATGAGATGCCATTA
1 AATTGCAAT-AGATGCCATTA
94718 TCCATCAACC
Statistics
Matches: 45, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
32 28 0.62
33 1 0.02
34 1 0.02
35 1 0.02
38 14 0.31
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (37 bp):
AATTGCAATAGATGCCATTAATGCTGACCATACAACA
Left flanking sequence: Indices 94127 -- 94626
AATGCTCGGCTCATCAGCTGGGGAACCACCTCATGGAAGGCGTGGATCCAGACGTCCCGTGCAAA
ACGCCTAGACCCTAAGCCGACGTCGGACTCCCTCTCGTGCTTGCCGACCGCATACGGTCTCCAAA
CCACCTGTCCAAACAAGAAGAATGATCGCATATGGAAAGGAAAAGAGGAGCATAGAAGGAATACC
TGATCAAAGCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTT
AAGGGCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCA
CGAGCAAAGCCCCCAGCGTCACGTCACGAGCAAAGCCCTCTTTTTTCGCTTTGCGAGTGCTTTGT
GCAATTTAAAGATAAAGGTCAGCGCACAACTATAGGCAGAGCCAAAGCTTTGCGAGTGTGCTTAT
GATTTGTGGAAACACTAATGGCAATTGTATGCCATTAGTGTCCAT
Right flanking sequence: Indices 94718 -- 95217
TCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCT
CTTCTTTAAGAAAGCACTCCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGA
AGGTCAGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCA
GAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGA
CCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGG
Found at i:95157 original size:43 final size:42
Alignment explanation
Indices: 95094--95471 Score: 189
Period size: 43 Copynumber: 9.2 Consensus size: 42
95084 TTGTATGTCA
* * * *
95094 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
95137 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * *
95175 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
*
95213 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
95256 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * ***** * *
95297 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * *
95339 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
*
95378 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
95421 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
95464 TCAGGACT
1 TCAGGACT
95472 GATTATGGAA
Statistics
Matches: 258, Mismatches: 52, Indels: 50
0.72 0.14 0.14
Matches are distributed among these distances:
33 11 0.04
35 1 0.00
37 8 0.03
38 35 0.14
39 12 0.05
41 36 0.14
42 8 0.03
43 141 0.55
44 6 0.02
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 94594 -- 95093
CACTAATGGCAATTGTATGCCATTAGTGTCCATAATTGCAATTAGATGCCATTAATGCTGACCAT
ACAACAAATTGTATGCCATTAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATC
AACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCTCTTCTT
TAAGAAAGCACTCCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCA
GATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCA
GCACTAATGGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAA
TCAGTGACCTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 95472 -- 95971
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTT
TTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACA
Found at i:95256 original size:19 final size:19
Alignment explanation
Indices: 95232--95472 Score: 87
Period size: 19 Copynumber: 11.7 Consensus size: 19
95222 ACCTTACCAA
95232 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
95251 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
95275 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
95294 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
95316 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
95335 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** *
95355 -CTGGTCAAGACTGTCTTTC
1 AAAGGTCAAGACTGTC-TTG
* * ** *
95374 ACA-GTCAGGACTAACCTG
1 AAAGGTCAAGACTGTCTTG
95392 ACCAAAAAGGTCAAGACTGTCTTG
1 ----AA-AGGTCAAGACTGTCTTG
*
95416 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
95440 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
95459 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
95473 ATTATGGAAG
Statistics
Matches: 168, Mismatches: 26, Indels: 56
0.67 0.10 0.22
Matches are distributed among these distances:
17 5 0.03
18 3 0.02
19 83 0.49
20 6 0.04
21 9 0.05
22 14 0.08
23 2 0.01
24 46 0.27
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 94732 -- 95231
CCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCTCTTCTTTAAGAAAG
CACTCCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCAGATAAGTC
AGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAAT
GGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGAC
CTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 95473 -- 95972
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAA
Found at i:95318 original size:41 final size:42
Alignment explanation
Indices: 95192--95473 Score: 231
Period size: 43 Copynumber: 6.7 Consensus size: 42
95182 TGATTCTTCT
* * * * ***
95192 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGTCAGGACTGACTTTTCTTGAAA
*
95235 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAA-GTCAGGACTGACTTTTCTTGAAA
*
95278 GGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTTT-TTGAAA
1 GGTCAAGACTGTCTTGAAAGTCAGGACTGA-CTTTTCTTGAAA
* *
95319 GATCAAGACTATCTTGAAAGATCAGGACTGA-TTCTTC-T----
1 GGTCAAGACTGTCTTGAAAG-TCAGGACTGACTT-TTCTTGAAA
* * * * ** ***
95357 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGTCAGGACTGACTTTTCTTGAAA
*
95400 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-TTCTTCTGGAAA
1 GGTCAAGACTGTCTTGAAA-GTCAGGACTGACTT-TTCTTGAAA
95443 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTGAAA-GTCAGGACTGA
95474 TTATGGAAGG
Statistics
Matches: 193, Mismatches: 31, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
38 21 0.11
39 6 0.03
41 34 0.18
42 16 0.08
43 116 0.60
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (42 bp):
GGTCAAGACTGTCTTGAAAGTCAGGACTGACTTTTCTTGAAA
Left flanking sequence: Indices 94692 -- 95191
TCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAA
TGACAATTCCAATGACCATCCATTCTCTTCTTTAAGAAAGCACTCCTTTCAATCTGATCTTGAAG
GAAAATGGAATTGTTGAAGCTTCTGAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCA
AAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAATGGCATACAATTGCAATTTTGGTATG
GTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGACCTTCCGGTCAGGACTCATTTCTTGA
AAGGTGAGGACTGTTTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 95474 -- 95973
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTT
GAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
Found at i:95472 original size:43 final size:43
Alignment explanation
Indices: 95232--95475 Score: 249
Period size: 43 Copynumber: 5.8 Consensus size: 43
95222 ACCTTACCAA
*
95232 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
95275 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTG
* * *
95316 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * ** * ***
95357 ---GGTCAAGACTGTCTTTCACA-GTCAGGACT-AACCTGACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCT-TCTTG
*
95397 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
95440 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
95476 ATGGAAGGAC
Statistics
Matches: 165, Mismatches: 21, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
37 3 0.02
38 20 0.12
39 4 0.02
41 34 0.21
42 9 0.05
43 92 0.56
44 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 94732 -- 95231
CCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCTCTTCTTTAAGAAAG
CACTCCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTGAAGCTTCTGAAGGTCAGATAAGTC
AGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGCTTTTTGTCAGAGTCAGCACTAAT
GGCATACAATTGCAATTTTGGTATGGTCAGCACTTGTCAGGATTTGTCTGACCTGAATCAGTGAC
CTTCCGGTCAGGACTCATTTCTTGAAAGGTGAGGACTGTTTTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 95476 -- 95975
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCCTTATGGAAGGACAGGACCCTTTTGA
AAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAAT
Found at i:95719 original size:43 final size:43
Alignment explanation
Indices: 95550--95705 Score: 145
Period size: 43 Copynumber: 3.9 Consensus size: 43
95540 TTGTATGTCA
* * * *
95550 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* *
95593 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* * *
95631 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTTCACAG
95669 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
95706 GAAAGGTCAG
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.13
35 1 0.01
37 5 0.06
38 20 0.23
39 5 0.06
41 1 0.01
43 44 0.51
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 95050 -- 95549
TGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATAAAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 95706 -- 96205
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTCCTTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACT
GTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTC
ATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTGTT
Found at i:95855 original size:20 final size:20
Alignment explanation
Indices: 95800--95878 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 20
95790 AAGACTGTCT
*
95800 TGAAAGGTCAGGACTCATTCTTCT
1 TGAAAGGTCAGGACTC---CTT-A
95824 TGAAAGGTCAGGACTCCTTA
1 TGAAAGGTCAGGACTCCTTA
* * *
95844 TGGAAGGACAGGAC-CCTTT
1 TGAAAGGTCAGGACTCCTTA
95863 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
95879 ATGACAATTG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.33
20 13 0.27
21 3 0.06
24 16 0.33
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (20 bp):
TGAAAGGTCAGGACTCCTTA
Left flanking sequence: Indices 95300 -- 95799
GTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 95879 -- 96378
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATT
GGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTG
TTGTATGCCATTAGTGTTCACAAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTC
CCTTCTTGTCTGATAGTGAATTTTGTCTTGAGAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGC
AAAGCCCTACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATCAAT
Found at i:95869 original size:19 final size:20
Alignment explanation
Indices: 95799--95878 Score: 90
Period size: 24 Copynumber: 3.9 Consensus size: 20
95789 CAAGACTGTC
95799 TTGAAAGGTCAGGACTCATTCTT
1 TTGAAAGGTCAGGACTC---CTT
95822 CTTGAAAGGTCAGGACTCCTT
1 -TTGAAAGGTCAGGACTCCTT
* * *
95843 ATGGAAGGACAGGAC-CCTT
1 TTGAAAGGTCAGGACTCCTT
95862 TTGAAAGGTCAGGACTC
1 TTGAAAGGTCAGGACTC
95879 ATGACAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 16 0.33
20 13 0.27
21 3 0.06
24 17 0.35
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (20 bp):
TTGAAAGGTCAGGACTCCTT
Left flanking sequence: Indices 95299 -- 95798
AGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATAAAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
Right flanking sequence: Indices 95879 -- 96378
ATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTT
CCATATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGCCATACCAAAATCCATCCAAATT
GGTTGATGGATAATGGCATCTCATTGCAATTTGTGATATGGTCAGCACTAATGGCATACAATTTG
TTGTATGCCATTAGTGTTCACAAAAAGAATGAAGATCAATGACAATTGTCCATCAATATGAGTTC
CCTTCTTGTCTGATAGTGAATTTTGTCTTGAGAAGCCCTACGCTTTGCGAGTGCGTGCTTTGTGC
AAAGCCCTACGCTTTGCGAGTGCTTTGTGGGCTTTGCTCATCAAT
Done.