Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 2 of 20
Found at i:43447 original size:43 final size:43
Alignment explanation
Indices: 43384--43596 Score: 180
Period size: 43 Copynumber: 5.2 Consensus size: 43
43374 TTGTATGTCA
* * *
43384 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* * *
43427 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
** * * * *
43465 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
43503 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
* *
43546 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
43589 TCAGGACT
1 TCAGGACT
43597 TTTGATGGAA
Statistics
Matches: 132, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
33 9 0.07
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.05
41 1 0.01
42 5 0.04
43 89 0.67
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAG
Left flanking sequence: Indices 42884 -- 43383
AAAAAGAAAAGGCGGTAATAAATGAAAGATCCTTGTAGTTCCGATACCAGAGACGGAAAGGAACT
TAAGGAAAGGAGATTATGGAAATGATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTG
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 43597 -- 44096
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAG
GACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGG
Found at i:43534 original size:24 final size:24
Alignment explanation
Indices: 43502--43578 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
43492 GTATTTCACA
*
43502 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
43526 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
43545 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
43569 GTCAAGACTG
1 GTCAAGACTG
43579 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 43002 -- 43501
CAGGATTCTCTGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 43579 -- 44078
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGA
CTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACC
AAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATG
Found at i:43771 original size:16 final size:16
Alignment explanation
Indices: 43750--43780 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
43740 AAGACTATTT
43750 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
43766 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
43781 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 43250 -- 43749
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTATTT
Right flanking sequence: Indices 43781 -- 44280
AATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTA
TGGAAGGACAGGACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAG
TACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAG
GTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCA
AGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
Found at i:43857 original size:20 final size:19
Alignment explanation
Indices: 43814--43859 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
43804 CAGATTCCAT
*
43814 ACAGGACTCTTTTGAAAGG
1 ACAGGACTCTTATGAAAGG
* *
43833 TCAGGACTCATTATGGAAGG
1 ACAGGACTC-TTATGAAAGG
43853 ACAGGAC
1 ACAGGAC
43860 CAATTGCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (19 bp):
ACAGGACTCTTATGAAAGG
Left flanking sequence: Indices 43314 -- 43813
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAG
TACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGA
AAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGGACTCTGA
AAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCAT
Right flanking sequence: Indices 43860 -- 44359
CAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
CAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTG
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAA
GATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
Found at i:43912 original size:28 final size:28
Alignment explanation
Indices: 43872--44027 Score: 198
Period size: 28 Copynumber: 5.6 Consensus size: 28
43862 ATTGCAATTC
43872 AATGCCATTAGTACTCACTTGACAACAA
1 AATGCCATTAGTACTCACTTGACAACAA
43900 AATGCCATTAGTACTCACTTGACAACAA
1 AATGCCATTAGTACTCACTTGACAACAA
* * *
43928 ATTG-TA-T-GTCTCTCACTTGACAACAA
1 AATGCCATTAGT-ACTCACTTGACAACAA
43954 AATGCCATTAGTACTCACTTGACAA-ACA
1 AATGCCATTAGTACTCACTTGACAACA-A
43982 AATGCCATTAGTACTCAC-TGTACAA-ACA
1 AATGCCATTAGTACTCACTTG-ACAACA-A
*
44010 AATGTCATTAGTACTCAC
1 AATGCCATTAGTACTCAC
44028 CATACCAAAA
Statistics
Matches: 115, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
25 2 0.02
26 19 0.17
27 5 0.04
28 87 0.76
29 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAACAA
Left flanking sequence: Indices 43372 -- 43871
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTT
GAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTC
Right flanking sequence: Indices 44028 -- 44527
CATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATT
ATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTG
ACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
Found at i:44134 original size:16 final size:16
Alignment explanation
Indices: 44113--44143 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44103 AGGACCCTTT
44113 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
44129 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
44144 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 43613 -- 44112
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAAG
ACTATTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGA
TTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGT
ACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 44144 -- 44643
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAAC
AGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCA
Found at i:44210 original size:43 final size:42
Alignment explanation
Indices: 44162--44259 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
44152 TGATTGAGGA
* * * *
44162 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
44205 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
44247 AAAGATCAGAACT
1 AAAG-TCAGAACT
44260 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 43662 -- 44161
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAG
GACCAATTGCAATTCAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGA
CAACAAATTGTATGTCTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 44260 -- 44759
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTT
CTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
Found at i:44338 original size:28 final size:28
Alignment explanation
Indices: 44315--44434 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
44305 TGACAATTGT
44315 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
44343 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
44371 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
44399 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
44427 ATGCCATT
1 ATGCCATT
44435 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 43815 -- 44314
CAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTCAATGCCAT
TAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 44435 -- 44934
TTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAAGACT
GTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCAT
GACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGT
ACTTTCCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCATA
Found at i:44518 original size:16 final size:16
Alignment explanation
Indices: 44497--44527 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44487 TCATTCTTCT
44497 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
44513 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
44528 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 43997 -- 44496
CACTGTACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGA
ACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCA
CTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGT
ACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCT
Right flanking sequence: Indices 44528 -- 45027
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTG
TACAAACACAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTGTTGACCATACAACAA
ATTGTATGCCTTCCATAATTGCAATGAGATGCCATTAATGCTGACCATACAACAAATTGTATGCC
ATTAGTGCTGACCATATCACAAATTGCAATTAGATGCCATTAGTG
Found at i:44727 original size:28 final size:28
Alignment explanation
Indices: 44704--44901 Score: 161
Period size: 28 Copynumber: 7.4 Consensus size: 28
44694 TGACAATTGT
*
44704 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
44732 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
44760 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAAAAA
* * * *
44788 TTG-TA-T-GTCTCTCACTTGACAAACAA
1 ATGCCATTAGT-ACTCACTTGACAAAAAA
* *
44814 ATGCCATTAGTACT---TT--C---CAT
1 ATGCCATTAGTACTCACTTGACAAAAAA
*
44834 ATGCCATTAGTACTCAC-TGTACAAACACA
1 ATGCCATTAGTACTCACTTG-ACAAA-AAA
*
44863 ATGCCATTAGTACTCAC-TGTACAAACAA
1 ATGCCATTAGTACTCACTTG-ACAAAAAA
*
44891 ATGTCATTAGT
1 ATGCCATTAGT
44902 GTTGACCATA
Statistics
Matches: 139, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
20 16 0.12
22 1 0.01
23 1 0.01
25 5 0.04
26 17 0.12
27 2 0.01
28 70 0.50
29 27 0.19
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAAAAA
Left flanking sequence: Indices 44204 -- 44703
CAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACC
AAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 44902 -- 45401
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTAATGCTGACCATA
CAACAAATTGTATGCCATTAGTGCTGACCATATCACAAATTGCAATTAGATGCCATTAGTGCTGA
CCATACAACAAATTGTATGCCATTAGTACTGACTATCACAAAAATTGAAATGAACTTAGGAAAGA
AAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAATCGAATAGCTACAGTGTTTGAGGG
TCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGAGGGCAGAACGCGTAGAGGAACCC
GAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCTAGTGGATGAAATGCGGGCGGCGA
GGGACGATTCACAGCCTGATCACTCACTAGTGGAACTACTGGAATGATGCTCATTTTTTCCGCCC
AAGCTTCCAACGAAGCTATTTGAGTCAATTACCATGGCCTGGGAT
Found at i:44730 original size:389 final size:382
Alignment explanation
Indices: 44112--44821 Score: 1305
Period size: 389 Copynumber: 1.8 Consensus size: 382
44102 CAGGACCCTT
44112 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
1 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
44177 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
66 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
44242 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
131 TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
44307 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
196 ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
44372 TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT-ACTCACTTGACAAACAAATGCCATTT
261 TGCCATTAGTACTCACTTGACAACAAAATG-CA-T-GTCACTCACTTGACAAACAAATGCCATTT
44436 TCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
323 TCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
44496 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
1 TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
*
44561 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAA
66 CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGA-C----CAAAAAGATCAA
44626 GACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGAC
126 GACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGAC
44691 TCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
191 TCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
* * *
44756 CAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCAT
256 CAAAATGCCATTAGTACTCACTTGACAACAAAATGCATGTCACTCACTTGACAAACAAATGCCAT
44821 T
321 T
44822 AGTACTTTCC
Statistics
Matches: 316, Mismatches: 4, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
384 111 0.35
385 1 0.00
386 2 0.01
387 25 0.08
388 1 0.00
389 176 0.56
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (382 bp):
TTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTG
TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAACAAAATGCATGTCACTCACTTGACAAACAAATGCCATTTTCC
ATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTC
Left flanking sequence: Indices 43612 -- 44111
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAA
GACTATTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAG
ATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCAATTGCAATTC
AATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGT
CTCTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTCTCTGGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTT
Right flanking sequence: Indices 44822 -- 45321
AGTACTTTCCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAA
ACAAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCAATGAGATGCCA
TTAATGCTGACCATACAACAAATTGTATGCCATTAGTGCTGACCATATCACAAATTGCAATTAGA
TGCCATTAGTGCTGACCATACAACAAATTGTATGCCATTAGTACTGACTATCACAAAAATTGAAA
TGAACTTAGGAAAGAAAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAATCGAATAGC
TACAGTGTTTGAGGGTCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGAGGGCAGAA
CGCGTAGAGGAACCCGAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCTAGTGGATG
AAATGCGGGCGGCGAGGGACGATTCACAGCCTGATCACTCACTAG
Found at i:44823 original size:54 final size:56
Alignment explanation
Indices: 44704--44901 Score: 192
Period size: 54 Copynumber: 3.7 Consensus size: 56
44694 TGACAATTGT
44704 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
* *
44760 ATGCCATTAGTACTCACTTGAC-AACAAATTG-TA-T-GTCTCTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAAACAAA-TGCCATTAGT-ACTCACTTGACAACA-AA
* *
44814 ATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCAC-TGTACAAACACA
1 ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG-AC-AACAAA
*
44863 ATGCCATTAGTACTCAC-TGTACAAACAAATGTCATTAGT
1 ATGCCATTAGTACTCACTTG-ACAAACAAATGCCATTAGT
44902 GTTGACCATA
Statistics
Matches: 116, Mismatches: 8, Indels: 35
0.73 0.05 0.22
Matches are distributed among these distances:
46 2 0.02
47 6 0.05
48 8 0.07
49 20 0.17
50 1 0.01
51 3 0.03
53 3 0.03
54 30 0.26
55 7 0.06
56 24 0.21
57 12 0.10
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (56 bp):
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 44204 -- 44703
CAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACC
AAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 44902 -- 45401
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTAATGCTGACCATA
CAACAAATTGTATGCCATTAGTGCTGACCATATCACAAATTGCAATTAGATGCCATTAGTGCTGA
CCATACAACAAATTGTATGCCATTAGTACTGACTATCACAAAAATTGAAATGAACTTAGGAAAGA
AAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAATCGAATAGCTACAGTGTTTGAGGG
TCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGAGGGCAGAACGCGTAGAGGAACCC
GAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCTAGTGGATGAAATGCGGGCGGCGA
GGGACGATTCACAGCCTGATCACTCACTAGTGGAACTACTGGAATGATGCTCATTTTTTCCGCCC
AAGCTTCCAACGAAGCTATTTGAGTCAATTACCATGGCCTGGGAT
Found at i:44867 original size:29 final size:28
Alignment explanation
Indices: 44834--44901 Score: 118
Period size: 29 Copynumber: 2.4 Consensus size: 28
44824 TACTTTCCAT
44834 ATGCCATTAGTACTCACTGTACAAACACA
1 ATGCCATTAGTACTCACTGTACAAACA-A
44863 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
44891 ATGTCATTAGT
1 ATGCCATTAGT
44902 GTTGACCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 11 0.29
29 27 0.71
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 44334 -- 44833
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACC
AAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAT
TGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCAT
Right flanking sequence: Indices 44902 -- 45401
GTTGACCATACAACAAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTAATGCTGACCATA
CAACAAATTGTATGCCATTAGTGCTGACCATATCACAAATTGCAATTAGATGCCATTAGTGCTGA
CCATACAACAAATTGTATGCCATTAGTACTGACTATCACAAAAATTGAAATGAACTTAGGAAAGA
AAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAATCGAATAGCTACAGTGTTTGAGGG
TCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGAGGGCAGAACGCGTAGAGGAACCC
GAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCTAGTGGATGAAATGCGGGCGGCGA
GGGACGATTCACAGCCTGATCACTCACTAGTGGAACTACTGGAATGATGCTCATTTTTTCCGCCC
AAGCTTCCAACGAAGCTATTTGAGTCAATTACCATGGCCTGGGAT
Found at i:44982 original size:32 final size:32
Alignment explanation
Indices: 44946--45078 Score: 153
Period size: 32 Copynumber: 4.0 Consensus size: 32
44936 TTGCAATGAG
*
44946 ATGCCATTAATGCTGACCATACAACAAATTGT
1 ATGCCATTAGTGCTGACCATACAACAAATTGT
44978 ATGCCATTAGTGCTGACCATATC-ACAAATTGCAATT
1 ATGCCATTAGTGCTGACCATA-CAACAAATTG----T
45014 AGATGCCATTAGTGCTGACCATACAACAAATTGT
1 --ATGCCATTAGTGCTGACCATACAACAAATTGT
* *
45048 ATGCCATTAGTACTGACTATCACAA-AAATTG
1 ATGCCATTAGTGCTGACCAT-ACAACAAATTG
45079 AAATGAACTT
Statistics
Matches: 89, Mismatches: 3, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
32 52 0.58
33 5 0.06
34 1 0.01
36 1 0.01
37 1 0.01
38 29 0.33
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (32 bp):
ATGCCATTAGTGCTGACCATACAACAAATTGT
Left flanking sequence: Indices 44446 -- 44945
ATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAAGACTGTCTTGAAAGA
TCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTTTCCATAT
GCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAG
TGTTGACCATACAACAAATTGTATGCCTTCCATAATTGCAATGAG
Right flanking sequence: Indices 45079 -- 45578
AAATGAACTTAGGAAAGAAAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAATCGAAT
AGCTACAGTGTTTGAGGGTCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGAGGGCA
GAACGCGTAGAGGAACCCGAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCTAGTGG
ATGAAATGCGGGCGGCGAGGGACGATTCACAGCCTGATCACTCACTAGTGGAACTACTGGAATGA
TGCTCATTTTTTCCGCCCAAGCTTCCAACGAAGCTATTTGAGTCAATTACCATGGCCTGGGATAT
CCGATGCCAGAGGTCTTCATTGTTGCCCGGTGCAATCGAGTCTGGTGCGATCGAGGTATTTGTGC
AAACCGATTCCCCATCTGCTCTGCTAGTTGGTTGGGGGCGGGGACAAGAAGAGAACTATCGGACG
TCGGGAGATTCTCATCTCCTTCCGATTCAAAGAATTTCAAGGCTT
Found at i:45029 original size:38 final size:38
Alignment explanation
Indices: 44934--45046 Score: 150
Period size: 38 Copynumber: 3.1 Consensus size: 38
44924 TGCCTTCCAT
* *
44934 AATTGCAATGAGATGCCATTAATGCTGACCATACAACA
1 AATTGCAATTAGATGCCATTAGTGCTGACCATACAACA
44972 AATTG----T--ATGCCATTAGTGCTGACCATATC-ACA
1 AATTGCAATTAGATGCCATTAGTGCTGACCATA-CAACA
45004 AATTGCAATTAGATGCCATTAGTGCTGACCATACAACA
1 AATTGCAATTAGATGCCATTAGTGCTGACCATACAACA
45042 AATTG
1 AATTG
45047 TATGCCATTA
Statistics
Matches: 65, Mismatches: 2, Indels: 16
0.78 0.02 0.19
Matches are distributed among these distances:
32 28 0.43
33 1 0.02
36 1 0.02
37 1 0.02
38 34 0.52
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (38 bp):
AATTGCAATTAGATGCCATTAGTGCTGACCATACAACA
Left flanking sequence: Indices 44434 -- 44933
TTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAAGAC
TGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCA
TGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAA
AATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAG
TACTTTCCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAAC
AAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCAT
Right flanking sequence: Indices 45047 -- 45546
TATGCCATTAGTACTGACTATCACAAAAATTGAAATGAACTTAGGAAAGAAAGAGAAAACTCTAA
TGATAACAAACACACACACGCTCTAATCGAATAGCTACAGTGTTTGAGGGTCGAGGGGCTTCCCT
TCCTCGAGAGAAGCCGGAACAGGTTGAGGGCAGAACGCGTAGAGGAACCCGAAAGAACCAATGGA
TACGTTTCAGAATCCCCACCTACGCCTAGTGGATGAAATGCGGGCGGCGAGGGACGATTCACAGC
CTGATCACTCACTAGTGGAACTACTGGAATGATGCTCATTTTTTCCGCCCAAGCTTCCAACGAAG
CTATTTGAGTCAATTACCATGGCCTGGGATATCCGATGCCAGAGGTCTTCATTGTTGCCCGGTGC
AATCGAGTCTGGTGCGATCGAGGTATTTGTGCAAACCGATTCCCCATCTGCTCTGCTAGTTGGTT
GGGGGCGGGGACAAGAAGAGAACTATCGGACGTCGGGAGATTCTC
Found at i:45078 original size:70 final size:70
Alignment explanation
Indices: 44934--45073 Score: 239
Period size: 70 Copynumber: 2.0 Consensus size: 70
44924 TGCCTTCCAT
*
44934 AATTGCAATGAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTGCTGACCATA
1 AATTGCAATGAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTACTGACCATA
44999 TCACA
66 TCACA
* *
45004 AATTGCAATTAGATGCCATTAGTGCTGACCATACAACAAATTGTATGCCATTAGTACTGA-C-TA
1 AATTGCAATGAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTACTGACCATA
45067 TCACA
66 TCACA
45072 AA
1 AA
45074 AATTGAAATG
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
68 9 0.13
69 1 0.01
70 57 0.85
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (70 bp):
AATTGCAATGAGATGCCATTAATGCTGACCATACAACAAATTGTATGCCATTAGTACTGACCATA
TCACA
Left flanking sequence: Indices 44434 -- 44933
TTTCCATCAACAATGAGTACTCACCATACCAAAACAGGTGAGTCGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAACAAAAAGATCAAGAC
TGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCA
TGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAA
AATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAG
TACTTTCCATATGCCATTAGTACTCACTGTACAAACACAATGCCATTAGTACTCACTGTACAAAC
AAATGTCATTAGTGTTGACCATACAACAAATTGTATGCCTTCCAT
Right flanking sequence: Indices 45074 -- 45573
AATTGAAATGAACTTAGGAAAGAAAGAGAAAACTCTAATGATAACAAACACACACACGCTCTAAT
CGAATAGCTACAGTGTTTGAGGGTCGAGGGGCTTCCCTTCCTCGAGAGAAGCCGGAACAGGTTGA
GGGCAGAACGCGTAGAGGAACCCGAAAGAACCAATGGATACGTTTCAGAATCCCCACCTACGCCT
AGTGGATGAAATGCGGGCGGCGAGGGACGATTCACAGCCTGATCACTCACTAGTGGAACTACTGG
AATGATGCTCATTTTTTCCGCCCAAGCTTCCAACGAAGCTATTTGAGTCAATTACCATGGCCTGG
GATATCCGATGCCAGAGGTCTTCATTGTTGCCCGGTGCAATCGAGTCTGGTGCGATCGAGGTATT
TGTGCAAACCGATTCCCCATCTGCTCTGCTAGTTGGTTGGGGGCGGGGACAAGAAGAGAACTATC
GGACGTCGGGAGATTCTCATCTCCTTCCGATTCAAAGAATTTCAA
Found at i:50738 original size:25 final size:25
Alignment explanation
Indices: 50661--50747 Score: 129
Period size: 25 Copynumber: 3.4 Consensus size: 25
50651 GTTGATGGAA
50661 AATGGCATATGGTCAAGTGAGTACT
1 AATGGCATATGGTCAAGTGAGTACT
* *
50686 AATGGCATTTGTTTGCACAGTGAGTACT
1 AATGGCATATG-GT-CA-AGTGAGTACT
50714 AATGGCATATGGTCAAGTGAGTACT
1 AATGGCATATGGTCAAGTGAGTACT
50739 AATGGCATA
1 AATGGCATA
50748 CAATTGCAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
25 29 0.53
26 3 0.05
27 3 0.05
28 20 0.36
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (25 bp):
AATGGCATATGGTCAAGTGAGTACT
Left flanking sequence: Indices 50161 -- 50660
GCCGAGTGGAACAGAAGATAGAGCCGGCACTTTTTCCAGTACGGGAGCTAGAGGAGAGAGAGTTG
GAGCCTGCGACTTCAAACGAGAATCTCCCTTTTTGTTGGTGTCTAACCGCAGCAAGCAAGTAGAG
CCGTGAAGTCAGCAGTTACAGGCGAGGTTGATTTCTCAAAGAGAATTCCTTTAACGGCTAGGGGC
TAGTGATAGAGTCTCTTTTCCGTTCCAGTGCAGTTCCTGACCGTCTTGGCGATTCCACTTTCCAT
CTCGAAAAAGCCATCTCGACTCACGACTACTTGAAAGTCAAGCTAACAAAAGTCTTTCTTCTTCT
GGTCAGGTAGCCAGGTAGGGGTAGGCGAGTTTAGGGTAGGCGGTTAAGGTCATGGACTCGTGGTA
GGCTACTTCTAGGCTCAGTTGCAAGCAAAAAGCACTCCTTTCAATCTGATCTTGAAGGAAAATGG
AATTGTTTTCTTTTTTGTGATAGTCAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 50748 -- 51247
CAATTGCAATTAGTCCTGACCTTTCAATCAAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTG
ACTTTTCCATAATGAGTCTTGACCTTTTAAGAAAAATCAGTCCTGATCTTTAAAGACAGTATTTA
CCTTTCAAAAAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACTTTTCCTAAAGAATTGCCATTTTGCTTTTTCTTTTCCTTCAAAAGCACTAATGGCATCT
CATTTTTGGTATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTGGTATGGTTCCTTTTTT
GATGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTT
TGATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTT
CTGAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAA
Found at i:50800 original size:19 final size:19
Alignment explanation
Indices: 50759--50808 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
50749 AATTGCAATT
*
50759 AGTCCTGACCTTTCAATCA
1 AGTCCTGACCTTTCAATAA
*
50778 AGTCTTGACCTTTCAA-AA
1 AGTCCTGACCTTTCAATAA
50796 GAGTCCTGACCTT
1 -AGTCCTGACCTT
50809 CCTGACTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 26 0.96
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAATAA
Left flanking sequence: Indices 50259 -- 50758
TGTTGGTGTCTAACCGCAGCAAGCAAGTAGAGCCGTGAAGTCAGCAGTTACAGGCGAGGTTGATT
TCTCAAAGAGAATTCCTTTAACGGCTAGGGGCTAGTGATAGAGTCTCTTTTCCGTTCCAGTGCAG
TTCCTGACCGTCTTGGCGATTCCACTTTCCATCTCGAAAAAGCCATCTCGACTCACGACTACTTG
AAAGTCAAGCTAACAAAAGTCTTTCTTCTTCTGGTCAGGTAGCCAGGTAGGGGTAGGCGAGTTTA
GGGTAGGCGGTTAAGGTCATGGACTCGTGGTAGGCTACTTCTAGGCTCAGTTGCAAGCAAAAAGC
ACTCCTTTCAATCTGATCTTGAAGGAAAATGGAATTGTTTTCTTTTTTGTGATAGTCAGTACTCA
TTGTTGATGGAAAATGGCATATGGTCAAGTGAGTACTAATGGCATTTGTTTGCACAGTGAGTACT
AATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATT
Right flanking sequence: Indices 50809 -- 51308
CCTGACTTTTCCATAATGAGTCTTGACCTTTTAAGAAAAATCAGTCCTGATCTTTAAAGACAGTA
TTTACCTTTCAAAAAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACTTTTCCTAAAGAATTGCCATTTTGCTTTTTCTTTTCCTTCAAAAGCACTAATGGC
ATCTCATTTTTGGTATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTGGTATGGTTCCTT
TTTTGATGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCT
TTTTTGATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCA
GTTTCTGAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAGATAAGGCCAGA
GCAAAGTCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTT
Found at i:51226 original size:15 final size:15
Alignment explanation
Indices: 51206--51244 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
51196 TCAGTTTCTG
*
51206 AAGGTCAG-GTCATAT
1 AAGGTCAGAG-CAAAT
51221 AAGGTCAGAGCAAAT
1 AAGGTCAGAGCAAAT
51236 AAGGTCAGA
1 AAGGTCAGA
51245 TAAGTCAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.18
Consensus pattern (15 bp):
AAGGTCAGAGCAAAT
Left flanking sequence: Indices 50706 -- 51205
TGAGTACTAATGGCATATGGTCAAGTGAGTACTAATGGCATACAATTGCAATTAGTCCTGACCTT
TCAATCAAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCTTGAC
CTTTTAAGAAAAATCAGTCCTGATCTTTAAAGACAGTATTTACCTTTCAAAAAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACTTTTCCTAAAGAATTGC
CATTTTGCTTTTTCTTTTCCTTCAAAAGCACTAATGGCATCTCATTTTTGGTATTAATGTGATAG
TCAGCACTAATGGCATACAATTTGTGGTATGGTTCCTTTTTTGATGGTTTCTTTCAAGATTCCAT
CAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTTTGATGGTTTCTTTCAAGATTCCA
TCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTTCTG
Right flanking sequence: Indices 51245 -- 51744
TAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTA
TGGAAAGGTTATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTT
TGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
Found at i:51350 original size:19 final size:19
Alignment explanation
Indices: 51323--51390 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
51313 AAAGGTTATG
51323 GAAAGGTCAGGACTTTCTT
1 GAAAGGTCAGGACTTTCTT
* *
51342 GAAAAGTCAGGACTTTCTG
1 GAAAGGTCAGGACTTTCTT
*
51361 GAAAGGTCAAGAC--TC-T
1 GAAAGGTCAGGACTTTCTT
51377 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
51391 AATGAGAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
16 12 0.29
17 2 0.05
19 28 0.67
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (19 bp):
GAAAGGTCAGGACTTTCTT
Left flanking sequence: Indices 50823 -- 51322
AATGAGTCTTGACCTTTTAAGAAAAATCAGTCCTGATCTTTAAAGACAGTATTTACCTTTCAAAA
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACTTTT
CCTAAAGAATTGCCATTTTGCTTTTTCTTTTCCTTCAAAAGCACTAATGGCATCTCATTTTTGGT
ATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTGGTATGGTTCCTTTTTTGATGGTTTCT
TTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTTTGATGGTTTC
TTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTTCTGAAGGTCA
GGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAGTCAGCAAA
GCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAGGTTATG
Right flanking sequence: Indices 51391 -- 51890
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTG
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGA
Found at i:51515 original size:19 final size:19
Alignment explanation
Indices: 51493--51563 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
51483 GATTCTTCTG
51493 GTCAAGACTGTCTTTCAAA
1 GTCAAGACTGTCTTTCAAA
* *
51512 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
*
51535 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCAAA
*
51555 GTCAGGACT
1 GTCAAGACT
51564 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 6 0.15
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 50993 -- 51492
GCACTAATGGCATCTCATTTTTGGTATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTGG
TATGGTTCCTTTTTTGATGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAA
TGGCATCTCCTTTTTTGATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAG
GTCAGGTTTCAGTTTCTGAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAG
ATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAGG
TTATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 51564 -- 52063
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATG
GAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGACTAATGAC
AATGATTGAGGAAAAGTCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTC
ACCATACCAAAACAGTCAGGACTCTCTTGAAAGGTCAGGACTAAT
Found at i:51544 original size:24 final size:24
Alignment explanation
Indices: 51512--51588 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
51502 GTCTTTCAAA
*
51512 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
* *
51536 GTCAAGACTG-TCTT-TC--ACA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
51555 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
51579 GTCAAGACTG
1 GTCAAGACTG
51589 TCTTGAAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 5 0.13
24 17 0.45
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 51012 -- 51511
TTTGGTATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTGGTATGGTTCCTTTTTTGATG
GTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTTTGAT
GGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTTCTGA
AGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAGTC
AGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAGGTTATGGAAAGGTCAGGACT
TTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGA
TTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAA
Right flanking sequence: Indices 51589 -- 52088
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGT
CATTAGTACTCACCATACCAAAAAGGTCAGGACTAATGACAATGATTGAGGAAAAGTCAGAACTC
ATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGTCAGGACTCT
CTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
Found at i:51558 original size:43 final size:43
Alignment explanation
Indices: 51492--51881 Score: 340
Period size: 43 Copynumber: 9.2 Consensus size: 43
51482 TGATTCTTCT
* **
51492 GGTCAAGACTGTCTTTCAAA-GTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTTATCTGAAA
* * * * **
51535 GGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTTATCTGAAA
* *
51578 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTATCTGAAA
* *
51621 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-TTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTATC-TGAAA
* * *
51664 GGTCAAGACTGTCTTGAAA--TCAGTACTGACCTTTTTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTATCTGAAA
* * * *
51705 GATCAAGACTATCTTGAAAGATCAGGACTGA--TTCTTCT----
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTT-ATCTGAAA
* ** * **
51743 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTATCTGAAA
* *
51786 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTATCTGAAA
* *
51829 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTATCTGAAA
*
51872 GGTCAGGACT
1 GGTCAAGACT
51882 CATTATGGAA
Statistics
Matches: 294, Mismatches: 38, Indels: 30
0.81 0.10 0.08
Matches are distributed among these distances:
38 25 0.09
39 1 0.00
40 2 0.01
41 36 0.12
42 11 0.04
43 213 0.72
44 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTATCTGAAA
Left flanking sequence: Indices 50992 -- 51491
AGCACTAATGGCATCTCATTTTTGGTATTAATGTGATAGTCAGCACTAATGGCATACAATTTGTG
GTATGGTTCCTTTTTTGATGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTA
ATGGCATCTCCTTTTTTGATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCA
GGTCAGGTTTCAGTTTCTGAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCA
GATAAGGCCAGAGCAAAGTCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAG
GTTATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 51882 -- 52381
CATTATGGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGAC
TAATGACAATGATTGAGGAAAAGTCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATG
AGTACTCACCATACCAAAACAGTCAGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTACCAAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCAT
CAACAATGAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAA
Found at i:51599 original size:19 final size:19
Alignment explanation
Indices: 51575--51858 Score: 135
Period size: 19 Copynumber: 13.7 Consensus size: 19
51565 ACCTTACCAA
51575 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
51594 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
51618 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
51637 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
51661 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
51680 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
51702 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
51721 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
51741 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
51759 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
51783 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
51802 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
51826 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
51845 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
51859 ATTCTTCTTG
Statistics
Matches: 206, Mismatches: 28, Indels: 62
0.70 0.09 0.21
Matches are distributed among these distances:
17 6 0.03
19 108 0.52
20 4 0.02
21 6 0.03
22 10 0.05
23 3 0.01
24 69 0.33
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 51075 -- 51574
TGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTTTG
ATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTTCT
GAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAG
TCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAGGTTATGGAAAGGTCAGGA
CTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 51859 -- 52358
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATTAGTACT
CACCATACCAAAAAGGTCAGGACTAATGACAATGATTGAGGAAAAGTCAGAACTCATTGTCATTA
TATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGTCAGGACTCTCTTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGACAGGACCCTTT
TGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
Found at i:51618 original size:24 final size:23
Alignment explanation
Indices: 51575--51907 Score: 134
Period size: 19 Copynumber: 15.8 Consensus size: 23
51565 ACCTTACCAA
51575 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
51594 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
51618 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
51637 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGA-TTTTCTTG
51661 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
51680 AAA--TC-AGTACTGACCTTTT-TTG
1 AAAGGTCAAG-ACTGA--TTTTCTTG
*
51702 AAAGATCAAGACT-A---TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
* *
51721 AAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGATT-TTCTTG
51743 ---GGTCAAGACTGTA-TTTC---
1 AAAGGTCAAGACTG-ATTTTCTTG
* * * ***
51760 -AAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGA-TTTTCTTG
51783 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
51802 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
51826 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
51845 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
* * * *
51869 AAAGGTCAGGACTCA--TTATGG
1 AAAGGTCAAGACTGATTTTCTTG
*
51890 AAAGGTCAAGACTCATTT
1 AAAGGTCAAGACTGATTT
51908 GTATGTCATT
Statistics
Matches: 246, Mismatches: 21, Indels: 90
0.69 0.06 0.25
Matches are distributed among these distances:
16 2 0.01
17 6 0.02
18 5 0.02
19 106 0.43
20 5 0.02
21 18 0.07
22 6 0.02
23 4 0.02
24 92 0.37
25 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTTTCTTG
Left flanking sequence: Indices 51075 -- 51574
TGGTTTCTTTCAAGATTCCATCAATTGCTTTTTCTTCAAAAGTACTAATGGCATCTCCTTTTTTG
ATGGTTTCTTTCAAGATTCCATCAAGTCCTGACCTTTCCATAAATCAGGTCAGGTTTCAGTTTCT
GAAGGTCAGGTCATATAAGGTCAGAGCAAATAAGGTCAGATAAGTCAGATAAGGCCAGAGCAAAG
TCAGCAAAGCCTTCTTTTGAAGATCTCTTTTGTGAGCTTATGGAAAGGTTATGGAAAGGTCAGGA
CTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 51908 -- 52407
GTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGACTAATGACAATGATTGAGGAAAAGTCA
GAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGTCAG
GACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAA
AAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAG
Found at i:52169 original size:28 final size:28
Alignment explanation
Indices: 52146--52265 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
52136 TGACAATTGT
52146 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
52174 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
52202 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
52230 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
52258 ATGCCATT
1 ATGCCATT
52266 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 3 0.03
28 84 0.93
29 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 51646 -- 52145
GACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAA
GACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCAT
TTGTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGACTAATGACAATGATTGAGGAAAAGT
CAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGTC
AGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCA
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 52266 -- 52765
TTCCATCAACAATGAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
Found at i:52381 original size:43 final size:42
Alignment explanation
Indices: 52318--52535 Score: 180
Period size: 43 Copynumber: 5.2 Consensus size: 42
52308 TTGTATGTCA
* * * *
52318 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
52361 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * * *
52403 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCAAAG
1 -TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
*
52442 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ***
52485 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
52528 TCAGGACT
1 TCAGGACT
52536 CATTCTTCTT
Statistics
Matches: 140, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
37 3 0.02
38 19 0.14
39 7 0.05
42 12 0.09
43 93 0.66
44 6 0.04
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 51818 -- 52317
TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTC
ATTATGGAAAGGTCAAGACTCATTTGTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGACT
AATGACAATGATTGAGGAAAAGTCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGA
GTACTCACCATACCAAAACAGTCAGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCAAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 52536 -- 53035
CATTCTTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
Found at i:52479 original size:81 final size:81
Alignment explanation
Indices: 52340--52501 Score: 288
Period size: 81 Copynumber: 2.0 Consensus size: 81
52330 TTATCAAAAA
*
52340 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
52405 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * *
52421 GGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
52486 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
52502 TGAAAGGTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 51840 -- 52339
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCA
TTTGTATGTCATTAGTACTCACCATACCAAAAAGGTCAGGACTAATGACAATGATTGAGGAAAAG
TCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGT
CAGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
AAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 52502 -- 53001
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
Found at i:52492 original size:19 final size:19
Alignment explanation
Indices: 52470--52535 Score: 78
Period size: 19 Copynumber: 3.2 Consensus size: 19
52460 AAAAGATCAA
52470 GACTGTCTTGAAAGGTCAG
1 GACTGTCTTGAAAGGTCAG
*
52489 GACTGATTCTTCTTGAAAGGTCAA
1 GACTG-----TCTTGAAAGGTCAG
52513 GACTGTCTTGAAAGGTCAG
1 GACTGTCTTGAAAGGTCAG
52532 GACT
1 GACT
52536 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
19 22 0.55
24 18 0.45
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (19 bp):
GACTGTCTTGAAAGGTCAG
Left flanking sequence: Indices 51970 -- 52469
TCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGT
CAGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
AAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAA
Right flanking sequence: Indices 52536 -- 53035
CATTCTTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
Found at i:52504 original size:24 final size:24
Alignment explanation
Indices: 52475--52583 Score: 156
Period size: 24 Copynumber: 4.8 Consensus size: 24
52465 ATCAAGACTG
52475 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
52499 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
52518 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
52542 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
52566 TCTTGAAAGGTCAAGACT
1 TCTTGAAAGGTCAGGACT
52584 CATTTGTATG
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.23
24 58 0.77
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 51975 -- 52474
ACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAAACAGTCAGGA
CTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTG
Right flanking sequence: Indices 52584 -- 53083
CATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGA
CTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
Found at i:52541 original size:43 final size:43
Alignment explanation
Indices: 52461--52587 Score: 173
Period size: 43 Copynumber: 2.8 Consensus size: 43
52451 ACCTTACCAA
* *
52461 AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
52504 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
* *
52547 AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCATT
1 AAAGGTCAAGACTG-----TCTTGAAAGGTCAGGACTCATT
52588 TGTATGTCAT
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
43 54 0.72
48 21 0.28
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Left flanking sequence: Indices 51961 -- 52460
GAGGAAAAGTCAGAACTCATTGTCATTATATGCCATTTTCCATCAACAATGAGTACTCACCATAC
CAAAACAGTCAGGACTCTCTTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACT
CACCTTACCAAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 52588 -- 53087
TGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
Found at i:52691 original size:64 final size:65
Alignment explanation
Indices: 52568--52711 Score: 211
Period size: 64 Copynumber: 2.2 Consensus size: 65
52558 CTGATTCTTC
* *
52568 TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGT-T
1 TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCT
* * *
52632 TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
1 TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCT
* *
52697 TTCAAA-GTCAGGACT
1 TTGAAAGGTCAAGACT
52712 AACCTTACCA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
64 66 0.92
65 6 0.08
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (65 bp):
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATCAAGACTGTCT
Left flanking sequence: Indices 52068 -- 52567
ATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGACAGGACCCTTTTGAAAGGTCAGGAC
TCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTTTCCATCAACAATGAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTAC
CAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTCTTC
Right flanking sequence: Indices 52712 -- 53211
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:52726 original size:43 final size:42
Alignment explanation
Indices: 52661--52873 Score: 124
Period size: 43 Copynumber: 5.2 Consensus size: 42
52651 TTGTATGTCA
* * *
52661 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
52704 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
52742 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
52780 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
52823 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
52866 TCAGGACT
1 TCAGGACT
52874 GATTATGGAA
Statistics
Matches: 130, Mismatches: 26, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 10 0.08
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.05
41 1 0.01
42 4 0.03
43 84 0.65
44 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 52161 -- 52660
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCT
GACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
GGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGATGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 52874 -- 53373
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Found at i:52809 original size:76 final size:79
Alignment explanation
Indices: 52683--52841 Score: 234
Period size: 76 Copynumber: 2.0 Consensus size: 79
52673 TTATCAAAAA
*
52683 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
52745 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
52759 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
52824 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
52840 GG
1 GG
52842 AAAGGTCAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.70
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 52183 -- 52682
GTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 52842 -- 53341
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCA
AAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAA
Found at i:52823 original size:19 final size:19
Alignment explanation
Indices: 52799--52874 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
52789 ACCTTACCAA
52799 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
52818 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
52842 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
52861 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
52875 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 52299 -- 52798
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATA
CTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TGATTCTTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 52875 -- 53374
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:53015 original size:43 final size:42
Alignment explanation
Indices: 52952--53121 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
52942 TTGTATGTCA
* * * *
52952 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
52995 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
53033 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
53071 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
53114 TCAGGACT
1 TCAGGACT
53122 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 52452 -- 52951
CCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAACAGATGAAGACTGTTTTGAAAGGTCAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 53122 -- 53621
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATT
Found at i:53336 original size:43 final size:43
Alignment explanation
Indices: 53288--53415 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
53278 ATTAGTACTC
* *
53288 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
53331 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * *
53374 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
53416 GATTCTTCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 5 0.06
43 73 0.94
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 52788 -- 53287
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 53416 -- 53915
GATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
GAACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAT
ACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:53372 original size:19 final size:19
Alignment explanation
Indices: 53302--53372 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
53292 TATCAAAAAG
* *
53302 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
53321 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
53344 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
53364 GTCAGGACT
1 GTCAAGACT
53373 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 52802 -- 53301
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 53373 -- 53872
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGA
CTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAAT
ACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAAGTCAGGACT
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCAC
Found at i:53431 original size:43 final size:43
Alignment explanation
Indices: 53288--53457 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
53278 ATTAGTACTC
* * * * *
53288 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTA
* *
53331 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTA
53374 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A
** ***
53418 TTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
53457 A
1 A
53458 TGAGAATGAT
Statistics
Matches: 113, Mismatches: 11, Indels: 10
0.84 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 15 0.13
41 2 0.02
42 5 0.04
43 86 0.76
44 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
Left flanking sequence: Indices 52788 -- 53287
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 53458 -- 53957
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGA
CTGACCTTATCAAAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
Found at i:53446 original size:16 final size:16
Alignment explanation
Indices: 53425--53455 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
53415 TGATTCTTCT
53425 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
53441 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
53456 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 52925 -- 53424
GACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCA
AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGA
CTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 53456 -- 53955
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTC
Found at i:53581 original size:43 final size:42
Alignment explanation
Indices: 53518--53783 Score: 221
Period size: 43 Copynumber: 6.2 Consensus size: 42
53508 TTGTATGTCA
* * *
53518 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
53561 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** *** * * *
53603 ATCAGGACTGATTCTTA-TTGAAAGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* * * *
53647 TCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
53690 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
53733 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
53776 TCAGGACT
1 TCAGGACT
53784 GATTATGGAA
Statistics
Matches: 183, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
42 15 0.08
43 154 0.84
44 14 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 53018 -- 53517
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCA
Right flanking sequence: Indices 53784 -- 54283
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
Found at i:53733 original size:19 final size:19
Alignment explanation
Indices: 53709--53784 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
53699 ACCTTACCAA
53709 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
53728 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
53752 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
53771 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
53785 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 53209 -- 53708
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 53785 -- 54284
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTT
Found at i:53757 original size:129 final size:129
Alignment explanation
Indices: 53518--53766 Score: 417
Period size: 129 Copynumber: 1.9 Consensus size: 129
53508 TTGTATGTCA
* *
53518 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
*
53583 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAG
66 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAAGACTGTATTTCACAG
* *
53647 TCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
* * * *
53712 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
66 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAAGACTGT
53767 CTTGAAAGGT
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
129 111 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (129 bp):
TCAGGACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAAGACTGTATTTCACAG
Left flanking sequence: Indices 53018 -- 53517
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCA
Right flanking sequence: Indices 53767 -- 54266
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCA
GGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
Found at i:53884 original size:172 final size:169
Alignment explanation
Indices: 53476--53940 Score: 485
Period size: 172 Copynumber: 2.7 Consensus size: 169
53466 ATTGAGGAAA
* *
53476 AGTCAGAACTCACCTTACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAG
1 AGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
53541 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
66 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
* * ** * *
53606 AGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCAC
131 AGGACTGATTATGAAGGAAAGGCCAATACTGTATTGCAC
* * * * * * * * *
53645 AGTCAGGACTGACCTTATCA-AAAAG-GTCAATACTGTATTTCAAAGTCAGGACTAACCTTACCA
1 AGTCAGGACTCACCTTACCATACAAGACTC-AT-TTGTATGTC--A-TCAGTACTCACCTTATCA
* ** *** * *
53708 AAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTG
61 AAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAAAAAGATCAAGACTATCTTG
* * *
53771 AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA-TGC-C
124 AAAGATCAGGACTGATTAT-GAAGGAAAGG-CCAA-T---ACTGTATTGCAC
* * *
53821 A-TTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
1 AGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
53885 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
66 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
53941 GATCAGGACT
Statistics
Matches: 231, Mismatches: 48, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
167 2 0.01
168 5 0.02
169 24 0.10
171 10 0.04
172 133 0.58
173 16 0.07
174 3 0.01
175 21 0.09
176 8 0.03
177 4 0.02
178 5 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (169 bp):
AGTCAGGACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTATGAAGGAAAGGCCAATACTGTATTGCAC
Left flanking sequence: Indices 52976 -- 53475
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 53941 -- 54440
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
Found at i:53925 original size:43 final size:42
Alignment explanation
Indices: 53862--54031 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
53852 TTGTATGTCA
* * * *
53862 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
53905 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
53943 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
53981 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
54024 TCAGGACT
1 TCAGGACT
54032 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 53362 -- 53861
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCATACAAGACTCCTTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATT
GAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTATTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 54032 -- 54531
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
Found at i:54278 original size:43 final size:43
Alignment explanation
Indices: 54198--54282 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
54188 ATTAGTACTC
* * *
54198 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTG
*
54241 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTACCAAAAAGGTCAAGACTGTACTTCAAA-GTCAGGACT
54283 TTTGATGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 4 0.11
43 33 0.89
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTACTTCAAAGTCAGGACTG
Left flanking sequence: Indices 53698 -- 54197
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 54283 -- 54782
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
Found at i:54484 original size:43 final size:42
Alignment explanation
Indices: 54421--54590 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
54411 TTGTATGTCA
* * *
54421 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
54464 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
54502 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
54540 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
54583 TCAGGACT
1 TCAGGACT
54591 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 53921 -- 54420
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATT
GTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 54591 -- 55090
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
Found at i:54808 original size:76 final size:80
Alignment explanation
Indices: 54697--54890 Score: 252
Period size: 76 Copynumber: 2.4 Consensus size: 80
54687 CTTATCAAAA
* *
54697 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTC
54759 AGGACTGATTCTTCT
66 AGGACTGATTCTTCT
* *
54774 -GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTG-AA-G
54838 TCAGGACTGATTCTTCT
64 TCAGGACTGATTCTTCT
**
54855 GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ----AGGTCAAGACTGTCTTTCAAGGTCAGGACTGA
54891 TTATGGAAGG
Statistics
Matches: 101, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
76 52 0.51
77 2 0.02
79 1 0.01
81 17 0.17
86 29 0.29
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (80 bp):
AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTC
AGGACTGATTCTTCT
Left flanking sequence: Indices 54197 -- 54696
CACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAA
Right flanking sequence: Indices 54891 -- 55390
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
Found at i:54838 original size:19 final size:19
Alignment explanation
Indices: 54814--54889 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
54804 ACCTTACCAA
54814 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
54833 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
54857 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
54876 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
54890 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 54314 -- 54813
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 54890 -- 55389
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
Found at i:54846 original size:43 final size:42
Alignment explanation
Indices: 54654--54890 Score: 210
Period size: 43 Copynumber: 5.8 Consensus size: 42
54644 CCAAAAATGG
* *
54654 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* *
54695 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
54738 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * *
54773 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* ***
54814 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
54857 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA
54891 TTATGGAAGG
Statistics
Matches: 158, Mismatches: 22, Indels: 30
0.75 0.10 0.14
Matches are distributed among these distances:
33 11 0.07
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 9 0.06
43 89 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 54154 -- 54653
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 54891 -- 55390
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
Found at i:55030 original size:43 final size:42
Alignment explanation
Indices: 54967--55179 Score: 124
Period size: 43 Copynumber: 5.2 Consensus size: 42
54957 TTGTATGTCA
* * *
54967 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
55010 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
55048 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
55086 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
** *** *
55129 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
55172 TCAGGACT
1 TCAGGACT
55180 CATTCTTCTT
Statistics
Matches: 130, Mismatches: 26, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 10 0.08
35 1 0.01
37 5 0.04
38 16 0.12
39 6 0.05
41 1 0.01
42 4 0.03
43 84 0.65
44 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 54467 -- 54966
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 55180 -- 55679
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATT
GTATGTCATTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTT
GATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGA
CTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATC
Found at i:55073 original size:291 final size:296
Alignment explanation
Indices: 54559--55237 Score: 1052
Period size: 291 Copynumber: 2.3 Consensus size: 296
54549 ACCTTACCAA
* *
54559 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTCATGGAAGGACAGGACCAATTGCAATTGTA
* * *
54624 TGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
66 TGCCATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCT
54689 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
129 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
*
54754 TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAG
194 TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAG
54818 GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
258 GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
54857 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTCATGGAAGGACAGGACCAATTGCAATTGT
* ** **
54921 ATGCCATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCT
65 ATGCCATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCT
54980 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
129 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
55045 TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
194 TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
55110 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
259 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
* * *
55148 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC-ATTGCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A---TTCATGGAAGGACAGGAC-CAATTGCAA
** *
55212 TTCAATGCCATTAGTACTCACTTGAC
61 TTGTATGCCATTAGTACTCACCTGAC
55238 AAACAAATGC
Statistics
Matches: 356, Mismatches: 17, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
291 213 0.60
292 4 0.01
293 1 0.00
294 4 0.01
295 43 0.12
296 1 0.00
297 1 0.00
298 84 0.24
299 5 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (296 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTCATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 54059 -- 54558
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 55238 -- 55737
AAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTA
CTCACTGTACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACC
AAAAATTGTATGTCATTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTT
AGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACC
ATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAG
GTCAGGACTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:55115 original size:76 final size:79
Alignment explanation
Indices: 54989--55147 Score: 234
Period size: 76 Copynumber: 2.0 Consensus size: 79
54979 TTATCAAAAA
*
54989 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
55051 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
55065 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
55130 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
55146 GG
1 GG
55148 AAAGGTCAAG
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.70
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 54489 -- 54988
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 55148 -- 55647
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
TCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATACCAAAAATT
GTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTTTTGAAAAGACAAAACA
AAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGG
Found at i:55129 original size:19 final size:19
Alignment explanation
Indices: 55105--55179 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
55095 ACCTTACCAA
55105 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
55124 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
55148 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
55167 AAAGGTCAGGACT
1 AAAGGTCAAGACT
55180 CATTCTTCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 54605 -- 55104
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 55180 -- 55679
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATT
GTATGTCATTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTT
GATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGA
CTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATC
Found at i:55185 original size:43 final size:43
Alignment explanation
Indices: 55105--55203 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
55095 ACCTTACCAA
*
55105 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
55148 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
55191 AAAGGTCAGGACT
1 AAAGGTCAAGACT
55204 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 54605 -- 55104
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 55204 -- 55703
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATA
CCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTTTTGAAAA
GACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
Found at i:55204 original size:24 final size:24
Alignment explanation
Indices: 55119--55207 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
55109 GTCAAGACTG
*
55119 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
55143 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
55162 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
55186 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
55208 GCAATTCAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.26
20 1 0.02
21 1 0.02
23 1 0.02
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 54619 -- 55118
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 55208 -- 55707
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCATACCAA
AAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTTTTGAAAAGACA
AAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCA
TACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGA
Found at i:55247 original size:28 final size:28
Alignment explanation
Indices: 55215--55391 Score: 322
Period size: 28 Copynumber: 6.3 Consensus size: 28
55205 ATTGCAATTC
55215 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
55243 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
55271 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
55299 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
55327 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
55355 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
55383 AATGCCATT
1 AATGCCATT
55392 TTCCATACCA
Statistics
Matches: 148, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
27 2 0.01
28 146 0.99
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 54715 -- 55214
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 55392 -- 55891
TTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTT
TTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAG
GAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTA
Found at i:55529 original size:16 final size:16
Alignment explanation
Indices: 55508--55538 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55498 AGGACTTGAT
55508 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
55524 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
55539 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 55008 -- 55507
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCCAT
ACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTTTTGAAA
AGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGAT
Right flanking sequence: Indices 55539 -- 56038
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGT
Found at i:55742 original size:43 final size:42
Alignment explanation
Indices: 55678--55847 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
55668 TTGTATGTCA
* * *
55678 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
55721 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
55759 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
55797 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
55840 TCAGGACT
1 TCAGGACT
55848 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 5 0.05
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 55178 -- 55677
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTTTCCATACCAAAAATTGTATGCTATTAGTACTCACTTGACCAAAAA
TTGTATGTCATTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGAC
TTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAG
GACTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 55848 -- 56347
TTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAT
ACTGTCTTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
Found at i:56054 original size:81 final size:81
Alignment explanation
Indices: 55955--56116 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
55945 TTATCAAAAA
55955 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
56020 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * ***** * * *
56036 GGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
56101 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
56117 TGAAAGGTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (81 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 55455 -- 55954
TTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
TCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTC
AGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 56117 -- 56616
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCA
Found at i:56088 original size:24 final size:22
Alignment explanation
Indices: 56053--56154 Score: 81
Period size: 19 Copynumber: 4.7 Consensus size: 22
56043 ACTGTCTTTC
*
56053 AAGGTCAGGACTGACCTTTTTTGA
1 AAGGTCAAGACTGA--TTTTTTGA
*
56077 AAGGTCAAGACTG---TCTTGA
1 AAGGTCAAGACTGATTTTTTGA
*
56096 AAGGTCAGGACTGATTCTTCTTGA
1 AAGGTCAAGACTGATT-TT-TTGA
*
56120 AAGGTCAAGACTG---TCTTGA
1 AAGGTCAAGACTGATTTTTTGA
*
56139 AAGGTCAGGACTGATT
1 AAGGTCAAGACTGATT
56155 ATGGAAGGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
19 33 0.52
20 1 0.02
23 1 0.02
24 28 0.44
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (22 bp):
AAGGTCAAGACTGATTTTTTGA
Left flanking sequence: Indices 55553 -- 56052
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACT
TGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAATT
GTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTC
Right flanking sequence: Indices 56155 -- 56654
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:56151 original size:43 final size:43
Alignment explanation
Indices: 55910--56154 Score: 208
Period size: 43 Copynumber: 5.9 Consensus size: 43
55900 ACCAAAAATG
* * * *
55910 GAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCA
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-T
* * ** **
55951 AAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCA
1 GAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTT
* * * *
55994 AAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
* **
56036 ----GGTCAATACTGTCTTTCAAGGTCAGGACTGACCTT-TT-TT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTT
56075 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
56118 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
56155 ATGGAAGGAC
Statistics
Matches: 168, Mismatches: 21, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
38 25 0.15
39 3 0.02
40 2 0.01
41 18 0.11
42 13 0.08
43 103 0.61
44 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
Left flanking sequence: Indices 55410 -- 55909
ATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTCTTTTTGAAAAGACAAAACAAA
ATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAA
AAAAGTCAGGACTTGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 56155 -- 56654
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:56394 original size:43 final size:42
Alignment explanation
Indices: 56229--56398 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
56219 TTGTATGTCA
* * * *
56229 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
56272 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
56310 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
56348 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
56391 TCAGGACT
1 TCAGGACT
56399 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 19 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 55729 -- 56228
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCA
AGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 56399 -- 56898
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
Found at i:56631 original size:113 final size:116
Alignment explanation
Indices: 56386--56631 Score: 306
Period size: 119 Copynumber: 2.1 Consensus size: 116
56376 GACTGTCTTG
*
56386 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
56450 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
56505 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * *
56569 TATC-AA-AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
56618 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
56632 TCTTGAAAGG
Statistics
Matches: 114, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 5 0.04
116 2 0.02
119 62 0.54
120 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 55886 -- 56385
TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTTTTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 56632 -- 57131
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCAT
Found at i:56665 original size:43 final size:43
Alignment explanation
Indices: 56565--57085 Score: 355
Period size: 43 Copynumber: 12.0 Consensus size: 43
56555 ATTAGTACTC
* *
56565 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
56608 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
56651 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAG
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---T--G
** ** * *** * * * * * *
56696 AATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 -A-CCTT-ACCAA-AAAGGTCAAGACT-GTCTTGAAAG--GTCAGGACTG
* * * * *
56745 ACCTTATCAAAAAGGTCAATACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
* * *
56788 ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* *** * *
56831 ATTCTT-CTTGAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 A-CCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
56874 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
** * *** *
56917 ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* * **
56958 ACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
57001 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
57044 ATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
57086 CATTCTTCTT
Statistics
Matches: 364, Mismatches: 87, Indels: 54
0.72 0.17 0.11
Matches are distributed among these distances:
40 14 0.04
41 32 0.09
42 16 0.04
43 247 0.68
44 14 0.04
45 9 0.02
46 9 0.02
47 2 0.01
48 1 0.00
49 8 0.02
51 1 0.00
52 5 0.01
54 6 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 56065 -- 56564
GACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 57086 -- 57585
CATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
Found at i:56680 original size:16 final size:16
Alignment explanation
Indices: 56659--56689 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56649 TGATTCTTCT
56659 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
56675 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
56690 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 56159 -- 56658
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 56690 -- 57189
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
Found at i:56861 original size:86 final size:85
Alignment explanation
Indices: 56755--57109 Score: 419
Period size: 86 Copynumber: 4.2 Consensus size: 85
56745 ACCTTATCAA
* * * *
56755 AAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
1 AAAGGTCAAGACTGT-CTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
*
56820 GATCAGGACTGATTCTTCTTG
65 GGTCAGGACTGATTCTTCTTG
56841 AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTC-TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
*
56906 GGTCAGGACTGATTTTTCTTG
65 GGTCAGGACTGATTCTTCTTG
* * * * * **
56927 AAAGGTCAAGACTGTCTTGA-AATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAG
1 AAAGGTCAAGACTGTCTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* ***
56991 GTCAGGACTGA-CCTTACCAA
66 GTCAGGACTGATTCTT-CTTG
* * * ***
57011 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAA
1 AAAGGTCAAGACTGTCTTCACA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAA
*
57075 AGGTCAGGACTCATTCTTCTTG
64 AGGTCAGGACTGATTCTTCTTG
*
57097 AAAGGTCAGGACT
1 AAAGGTCAAGACT
57110 CTTTTGAAAG
Statistics
Matches: 229, Mismatches: 34, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
83 2 0.01
84 70 0.31
85 4 0.02
86 147 0.64
87 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (85 bp):
AAAGGTCAAGACTGTCTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 56255 -- 56754
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 57110 -- 57609
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTATTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
Found at i:56908 original size:19 final size:19
Alignment explanation
Indices: 56884--57128 Score: 100
Period size: 19 Copynumber: 11.7 Consensus size: 19
56874 ACCTTACCAA
56884 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
56903 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
56927 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
56946 AAA--TC-AGTACTGACCTTATCAA
1 AAAGGTCAAG-ACTG-TC-T-T--G
* *
56968 AAAGGTCAATACTGTCTTT
1 AAAGGTCAAGACTGTCTTG
* * * *
56987 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
57011 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
57030 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
57054 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
57073 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* * *
57097 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTGTCTTG
57116 AAAGGTCAAGACT
1 AAAGGTCAAGACT
57129 CATTTGTATG
Statistics
Matches: 174, Mismatches: 23, Indels: 58
0.68 0.09 0.23
Matches are distributed among these distances:
16 2 0.01
17 6 0.03
18 1 0.01
19 73 0.42
20 6 0.03
21 5 0.03
22 8 0.05
23 6 0.03
24 66 0.38
25 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 56384 -- 56883
TGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
TGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 57129 -- 57628
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATAC
TGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAA
TTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
Found at i:57001 original size:170 final size:170
Alignment explanation
Indices: 56779--57118 Score: 425
Period size: 170 Copynumber: 2.0 Consensus size: 170
56769 TATTTCACAG
* ***
56779 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT-CTTGAA
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGA-CCTTACCAAAA
*
56843 AGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAA
65 AGGTCAAGACTGTC-TTCAAAGGTCAGGACTGATCCTT-CCAAAAAGGTCAAGACTGTCTTGAAA
* * *
56906 GGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
128 GGTCAGGACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAA
* * * * * ** *
56949 TCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAA
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGACCTTACCAAAAA
* * ***
57014 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
66 GGTCAAGACTGTCTTCAAAGGTCAGGACTGATCCTTCCAAAAAGGTCAAGACTGTCTTGAAAGGT
* *
57079 CAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAA
131 CAGGACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAA
57119 GGTCAAGACT
Statistics
Matches: 144, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
169 7 0.05
170 134 0.93
171 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (170 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTCAAAGGTCAGGACTGATCCTTCCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAAGACTCTCTTGAAA
Left flanking sequence: Indices 56279 -- 56778
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAG
Right flanking sequence: Indices 57119 -- 57618
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAA
AGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGA
CTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
Found at i:57008 original size:127 final size:127
Alignment explanation
Indices: 56841--57075 Score: 427
Period size: 127 Copynumber: 1.9 Consensus size: 127
56831 ATTCTTCTTG
56841 AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
* *
56906 GGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
66 GGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
*
56968 AAAGGTCAATACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
1 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
57032 AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
65 AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
57076 GGTCAGGACT
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
126 1 0.01
127 103 0.99
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (127 bp):
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
Left flanking sequence: Indices 56341 -- 56840
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
Right flanking sequence: Indices 57076 -- 57575
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCAAAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
Found at i:57091 original size:43 final size:43
Alignment explanation
Indices: 56798--57128 Score: 332
Period size: 43 Copynumber: 7.7 Consensus size: 43
56788 ACCTTACCAA
* * * *
56798 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* * * * *
56841 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTAG
* *
56884 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* * * *
56927 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-AG
* ** * * *
56968 AAAGGTCAATACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTAG
*
57011 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* *
57054 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
* * * *
57097 AAAGGTCAGGACTCTTTTGAAAGGTCAAGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
57129 CATTTGTATG
Statistics
Matches: 238, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
40 3 0.01
41 28 0.12
42 7 0.03
43 191 0.80
44 9 0.04
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAG
Left flanking sequence: Indices 56298 -- 56797
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 57129 -- 57628
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATAC
TGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAA
TTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
Found at i:57110 original size:24 final size:24
Alignment explanation
Indices: 57025--57132 Score: 101
Period size: 24 Copynumber: 4.9 Consensus size: 24
57015 GTCAAGACTG
*
57025 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* * *
57049 TCTGGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
57068 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
57092 TCTTGAAAGGTCAGGA--C--TCT
1 TCTTGAAAGGTCAGGACTCATTCT
*
57112 T-TTGAAAGGTCAAGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
57133 TGTATGTCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
19 27 0.40
20 5 0.07
21 2 0.03
22 1 0.01
23 2 0.03
24 30 0.45
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 56525 -- 57024
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 57133 -- 57632
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTA
TTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTT
TCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAAC
Found at i:57179 original size:193 final size:197
Alignment explanation
Indices: 56731--57511 Score: 755
Period size: 213 Copynumber: 3.8 Consensus size: 197
56721 CTCATTTGTA
* * * *
56731 TGTC-ATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTAC
1 TGTCAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA-AGTCAGGACTAACCTTAC
* * *
56795 CAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTT
65 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-TGAAAGGTCAAGACTGTC-TT
* * * * *** * * * *
56860 CACA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
128 GAAAGGTCAGGACTCATTCTT-CTTGAAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCA---TT
56923 CTTGAAAGGTCAAGAC
189 CTT---A-GT--A-AC
* *
56939 TGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACC
1 TGTC----AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA-GTCAGGACTAACC
57004 TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGT
61 TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-GAAAGGTCAAGACTGT
*
57069 CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCA-T-
125 CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCATTC
57132 TT-GT-A-
190 TTAGTAAC
*
57137 TGTC-ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
1 TGTCAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC-AAGTCAGGACTAACCTTAC
* * * * * *
57201 CAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTT
65 CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGAAAGGTCAAGACTGT-CTT
* * * *** * * * *
57266 CAAA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
128 GAAAGGTCAGGACTCATTCTT-CTTGAAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCA---TT
57329 CTTGAAAGGTCAAGAC
189 CTT---A-GT--A-AC
*
57345 TGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACC
1 TGTC----AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA-AGTCAGGACTAACC
57410 TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT----GGTCAAGACTGTC
61 TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGAAAGGTCAAGACTGTC
57471 TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
126 TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTC
57512 ATTGCAATTC
Statistics
Matches: 484, Mismatches: 53, Indels: 72
0.79 0.09 0.12
Matches are distributed among these distances:
192 3 0.01
193 148 0.31
194 8 0.02
197 1 0.00
198 6 0.01
199 1 0.00
203 4 0.01
207 6 0.01
208 44 0.09
209 4 0.01
212 8 0.02
213 248 0.51
214 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (197 bp):
TGTCAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTCTTGAAAGGTCAAGACTCATTCTTAGTA
AC
Left flanking sequence: Indices 56231 -- 56730
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTA
Right flanking sequence: Indices 57512 -- 58011
ATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TTTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATG
GCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAAT
GTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACT
TTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTG
CGTGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCGTCCATACTGGAGAGTTTG
AGTAATTTTTGTATACGGACCGTTATAGTGCAGGAAAACTCAGAT
Found at i:57207 original size:43 final size:42
Alignment explanation
Indices: 57142--57448 Score: 285
Period size: 43 Copynumber: 7.2 Consensus size: 42
57132 TTGTATGTCA
* * * *
57142 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
57185 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** *** * * *
57227 ATCAGGACTGATTCTTA-TTGAAAGGTCAATACTGTATTTCAAAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
*
57271 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
57314 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * * * *
57355 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
57398 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
57441 TCAGGACT
1 TCAGGACT
57449 GATTCTTCTG
Statistics
Matches: 208, Mismatches: 48, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
41 26 0.12
42 23 0.11
43 148 0.71
44 11 0.05
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 56642 -- 57141
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCA
AAAAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 57449 -- 57948
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCAT
TGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTT
TCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGC
AATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGT
CACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTT
GAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCG
TGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCG
Found at i:57261 original size:86 final size:86
Alignment explanation
Indices: 57161--57386 Score: 339
Period size: 86 Copynumber: 2.7 Consensus size: 86
57151 ACCTTATCAA
* *
57161 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAA
57226 GATCAGGACTGATTCTTATTG
66 GATCAGGACTGATTCTTATTG
* * *
57247 AAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAA
* * *
57312 GGTCAGGACTGATTTTTCTTG
66 GATCAGGACTGATTCTTATTG
* * *
57333 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAAAAAGGTCAAGACT
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
57387 GTATTTCACA
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
84 30 0.24
85 5 0.04
86 92 0.72
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (86 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAA
GATCAGGACTGATTCTTATTG
Left flanking sequence: Indices 56661 -- 57160
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
TTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCTT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 57387 -- 57886
GTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGC
AATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTTCC
ATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCAAT
TGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTCAC
GAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTGAA
ATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGA
Found at i:57304 original size:406 final size:401
Alignment explanation
Indices: 56715--57511 Score: 1434
Period size: 406 Copynumber: 2.0 Consensus size: 401
56705 GGAATGACCA
* *
56715 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGT
* *
56780 CAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAG
* *
56845 GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
131 GTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
56910 AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
196 AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
* * *
56975 AATACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
261 AAGACTGTATTTCACA-GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
57039 GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
325 GACTGATTCTTCT-----GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
57104 AGGACTCTTTTGAAAGG
385 AGGACTCTTTTGAAAGG
*
57121 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
1 TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGT
57186 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAG
66 CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAG
*
57251 GTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
131 GTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
57316 AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
196 AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
57381 AAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
261 AAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
57446 ACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
326 ACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
57511 C
391 C
57512 ATTGCAATTC
Statistics
Matches: 379, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
401 54 0.14
406 324 0.85
407 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (401 bp):
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAG
GTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
CTTTTGAAAGG
Left flanking sequence: Indices 56215 -- 56714
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
Right flanking sequence: Indices 57512 -- 58011
ATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TTTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATG
GCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAAT
GTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACT
TTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTG
CGTGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCGTCCATACTGGAGAGTTTG
AGTAATTTTTGTATACGGACCGTTATAGTGCAGGAAAACTCAGAT
Found at i:57314 original size:19 final size:19
Alignment explanation
Indices: 57290--57354 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
57280 ACCTTACCAA
57290 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
57309 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
57333 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
57352 AAA
1 AAA
57355 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 56790 -- 57289
CTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCT
TTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTAT
TGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 57355 -- 57854
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGA
CTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCTCACATTAAACA
AAACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGC
ACACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTT
TGAATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGAC
Found at i:57441 original size:19 final size:19
Alignment explanation
Indices: 57417--57486 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
57407 ACCTTACCAA
57417 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
57436 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
57456 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
57474 AAAGGTCAGGACT
1 AAAGGTCAAGACT
57487 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
19 32 0.80
21 4 0.10
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 56917 -- 57416
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTG
TCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TATTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 57487 -- 57986
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAA
ACAAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCAC
ACTCGCTTCGCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTG
AATGACATGTACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGT
GCTTTGTCGATTCGCTTTGCGAGTGCGTGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAA
GAAGCCGTCCATACTGGAGAGTTTGAGTAATTTTTGTATACGGAC
Found at i:57471 original size:38 final size:38
Alignment explanation
Indices: 57420--57495 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
57410 TTACCAAAAA
*
57420 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
57458 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
57496 TGAAAGGTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Left flanking sequence: Indices 56920 -- 57419
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTCT
TTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTAT
TGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAA
AAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 57496 -- 57995
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGCCATTTTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCC
ATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTC
GCTTTGGCTTTCCAATGTCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATG
TACGCTGACCTTGACTTTGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCG
ATTCGCTTTGCGAGTGCGTGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCGTC
CATACTGGAGAGTTTGAGTAATTTTTGTATACGGACCGTTATAGT
Found at i:57498 original size:24 final size:24
Alignment explanation
Indices: 57469--57514 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
57459 GTCAAGACTG
57469 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
57493 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
57515 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 56969 -- 57468
AAGGTCAATACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
Right flanking sequence: Indices 57515 -- 58014
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTTT
CCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGGCA
ATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATGTC
ACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTTTG
AAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGCGT
GCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCGTCCATACTGGAGAGTTTGAGT
AATTTTTGTATACGGACCGTTATAGTGCAGGAAAACTCAGATGCT
Found at i:57554 original size:28 final size:28
Alignment explanation
Indices: 57522--57642 Score: 226
Period size: 28 Copynumber: 4.3 Consensus size: 28
57512 ATTGCAATTC
57522 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
57550 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
57578 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
57606 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
57634 AATGCCATT
1 AATGCCATT
57643 TTCCATCAAC
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
27 2 0.02
28 90 0.98
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 57022 -- 57521
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTC
ATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCAAAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTG
TCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 57643 -- 58142
TTCCATCAACAATGAGTGCTGACTCTCACATTAAACAAAACAAATGCCATTAGTGCTCCCAATGG
CAATTGTATGCCATTAGTGTTTCCACAAATCATAAGCACACTCGCTTCGCTTTGGCTTTCCAATG
TCACGAGCAAAGCAAATCAGATTGACACTCGCAACTTTGAATGACATGTACGCTGACCTTGACTT
TGAAATTGGCTCGTGACGTGAACGCTTCGCTTTGCGAGTGCTTTGTCGATTCGCTTTGCGAGTGC
GTGCTTTTCTTTCTAGTTTGTGAAACTCTGGACGGGGAAGAAGCCGTCCATACTGGAGAGTTTGA
GTAATTTTTGTATACGGACCGTTATAGTGCAGGAAAACTCAGATGCTACACACATGGGCTGGAAA
GTCTATCCTTTATGTACAGTTTACCGAATCAATGTTTTCTCCCGGAAATTGGCCTACATATCCGA
CCTGTGAAGCTGGAGCTGAGCGAGGATCGGATTCTGATACTCGAA
Found at i:62483 original size:32 final size:32
Alignment explanation
Indices: 62413--62510 Score: 125
Period size: 32 Copynumber: 3.2 Consensus size: 32
62403 ATTCCAATTG
* *
62413 GGTATGGTGAGTACTAATGACAT---TTTTTT
1 GGTATAGTGAGTACTAATGACATACAATTTTT
62442 GGTATAGTGAGTACTAATGACATACAATTTTT
1 GGTATAGTGAGTACTAATGACATACAATTTTT
62474 GGTCA-AGTGAGTACTAAT-AGCATACAATTTTT
1 GGT-ATAGTGAGTACTAATGA-CATACAATTTTT
62506 GGTAT
1 GGTAT
62511 GGAAAATGGC
Statistics
Matches: 61, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
29 22 0.36
31 2 0.03
32 36 0.59
33 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (32 bp):
GGTATAGTGAGTACTAATGACATACAATTTTT
Left flanking sequence: Indices 61913 -- 62412
TTATACCTTTGCGTAGTCTCGGTCCACAGTGGAAGGCTCCGCACCTGAGCCTCGTTAGACTCCGC
GGAAGTTGAAGGTGTCAGTTAAGAGAATAGAAGCCCTGAGCCTTTTCTATATCCTAAGCTGACGC
AACTCCGTACCTTAGTGTAGTCTCCACAGCTCCCGTTCATAACCATTCTTCTTCTTTTTTTTCAT
AGGATTTCAATCAGAATTGCGTTAGGGAACGTCACGTTATTAGCAAAGCCCCCAGCGTCACGTCA
CGTCAGAGCAAAGCCCTCTTCACAAGAGGGCTTTGCTCTGACATGACCTTCATCAGCTTCAGCAA
TTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAATTGTCATTGATCTTC
AATGAAACACTAATGGCATACAATTTGTTGTATAGTCAGTACTAATCAGAATGGTTGATGGATAA
TGGTATACAATTTGTTTGATGGATAATGGCATACAATTCCAATTG
Right flanking sequence: Indices 62511 -- 63010
GGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
Found at i:62547 original size:28 final size:28
Alignment explanation
Indices: 62515--62719 Score: 362
Period size: 28 Copynumber: 7.3 Consensus size: 28
62505 TGGTATGGAA
62515 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
62543 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
62571 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
62599 AATGGCATTTGTTTGT-CAAGTGAGTACT
1 AATGGCATTTGTTTGTAC-AGTGAGTACT
62627 AATGGCATTTGTTTGTACAGTGAGTACT
1 AATGGCATTTGTTTGTACAGTGAGTACT
62655 AATGGCATTTGTTTGT-CAAGTGAGTACT
1 AATGGCATTTGTTTGTAC-AGTGAGTACT
62683 AATGGCATTTGTTTGT-CAAGTGAGTACT
1 AATGGCATTTGTTTGTAC-AGTGAGTACT
62711 AATGGCATT
1 AATGGCATT
62720 GAATTGCAAT
Statistics
Matches: 174, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
27 2 0.01
28 171 0.98
29 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (28 bp):
AATGGCATTTGTTTGTACAGTGAGTACT
Left flanking sequence: Indices 62015 -- 62514
GAGCCTTTTCTATATCCTAAGCTGACGCAACTCCGTACCTTAGTGTAGTCTCCACAGCTCCCGTT
CATAACCATTCTTCTTCTTTTTTTTCATAGGATTTCAATCAGAATTGCGTTAGGGAACGTCACGT
TATTAGCAAAGCCCCCAGCGTCACGTCACGTCAGAGCAAAGCCCTCTTCACAAGAGGGCTTTGCT
CTGACATGACCTTCATCAGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGG
ATGGTCATTGGAATTGTCATTGATCTTCAATGAAACACTAATGGCATACAATTTGTTGTATAGTC
AGTACTAATCAGAATGGTTGATGGATAATGGTATACAATTTGTTTGATGGATAATGGCATACAAT
TCCAATTGGGTATGGTGAGTACTAATGACATTTTTTTGGTATAGTGAGTACTAATGACATACAAT
TTTTGGTCAAGTGAGTACTAATAGCATACAATTTTTGGTATGGAA
Right flanking sequence: Indices 62720 -- 63219
GAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGAT
CTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTC
CTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:62755 original size:24 final size:24
Alignment explanation
Indices: 62727--62772 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
62717 ATTGAATTGC
62727 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
62751 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
62773 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 62227 -- 62726
AGCTTCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAATTGT
CATTGATCTTCAATGAAACACTAATGGCATACAATTTGTTGTATAGTCAGTACTAATCAGAATGG
TTGATGGATAATGGTATACAATTTGTTTGATGGATAATGGCATACAATTCCAATTGGGTATGGTG
AGTACTAATGACATTTTTTTGGTATAGTGAGTACTAATGACATACAATTTTTGGTCAAGTGAGTA
CTAATAGCATACAATTTTTGGTATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGC
Right flanking sequence: Indices 62773 -- 63272
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
ACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
Found at i:62784 original size:43 final size:42
Alignment explanation
Indices: 62731--62875 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 42
62721 AATTGCAATG
* *
62731 AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGAC
*** * ** *
62774 AGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAATAC
1 AGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACT-TTCAAGAC
* * *
62817 AGTATGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGAT
1 AGTCTTGACCTTTCAAGAAGAATCAGTCCTGA-CTTTCAAGAC
*
62860 AGTCTTGATCTTTCAA
1 AGTCTTGACCTTTCAA
62876 AAAAGGTGAG
Statistics
Matches: 76, Mismatches: 22, Indels: 8
0.72 0.21 0.08
Matches are distributed among these distances:
42 5 0.07
43 66 0.87
44 5 0.07
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (42 bp):
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACTTTCAAGAC
Left flanking sequence: Indices 62231 -- 62730
TCAGCAATTTGAAGTTGCGAGTGCTTTCTGAAAGAAGGGAATGGATGGTCATTGGAATTGTCATT
GATCTTCAATGAAACACTAATGGCATACAATTTGTTGTATAGTCAGTACTAATCAGAATGGTTGA
TGGATAATGGTATACAATTTGTTTGATGGATAATGGCATACAATTCCAATTGGGTATGGTGAGTA
CTAATGACATTTTTTTGGTATAGTGAGTACTAATGACATACAATTTTTGGTCAAGTGAGTACTAA
TAGCATACAATTTTTGGTATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
TGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTG
AGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAAT
GGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATG
Right flanking sequence: Indices 62876 -- 63375
AAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
Found at i:63050 original size:24 final size:24
Alignment explanation
Indices: 63018--63098 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
63008 GACCTTTCAG
*
63018 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
63042 AGTCCTGACCTTT-C--AAG-A-C
1 AGTCCTGACCTTTCCAGAAGAATC
*
63061 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCCAGAAGAATC
63085 AGTCCTGACCTTTC
1 AGTCCTGACCTTTC
63099 AAGACAGTCT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 26 0.53
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (24 bp):
AGTCCTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 62518 -- 63017
GGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGT
TTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 63099 -- 63598
AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAA
Found at i:63069 original size:19 final size:19
Alignment explanation
Indices: 63002--63116 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
62992 CATTCTCATT
63002 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
63018 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
63042 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63061 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
63085 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63104 AGTCTTGACCTTT
1 AGTCCTGACCTTT
63117 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.15
17 1 0.01
19 26 0.32
20 5 0.06
21 6 0.07
22 3 0.04
23 3 0.04
24 25 0.31
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 62502 -- 63001
TTTTGGTATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAG
TACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACC
TTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 63117 -- 63616
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTT
TCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
TTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTT
Found at i:63075 original size:43 final size:43
Alignment explanation
Indices: 63002--63159 Score: 209
Period size: 43 Copynumber: 3.7 Consensus size: 43
62992 CATTCTCATT
63002 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
63042 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
*** * *
63085 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
*
63128 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
63160 TTGATAAGGT
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
40 14 0.13
41 2 0.02
42 4 0.04
43 84 0.79
44 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 62502 -- 63001
TTTTGGTATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAG
TACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGG
CATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACC
TTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 63160 -- 63659
TTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGA
Found at i:63160 original size:43 final size:43
Alignment explanation
Indices: 63040--63212 Score: 199
Period size: 43 Copynumber: 4.0 Consensus size: 43
63030 TCCAGAAGAA
* ** * *
63040 TCAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCCAGAAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAG-G
* *
63083 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
*
63126 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGG
* * *
63169 TCAGTCCTGA-CTGTGAAATAAAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCT-TTAAAGACAGTCTTGACCTTTTTGATAAGG
63212 T
1 T
63213 GAGTACTAAT
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 4 0.03
43 104 0.90
44 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 62540 -- 63039
ACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGC
ATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTG
TCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
TGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCT
GACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCAT
TCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAA
Right flanking sequence: Indices 63213 -- 63712
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGAC
Found at i:63174 original size:24 final size:24
Alignment explanation
Indices: 63103--63179 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
63093 CCTTTCAAGA
* *
63103 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
63127 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
63146 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
63170 CAGTCCTGAC
1 CAGTCCTGAC
63180 TGTGAAATAA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 17 0.43
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 62603 -- 63102
GCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAG
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGT
CTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTC
CTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 63180 -- 63679
TGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCC
TGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACC
TTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
Found at i:63292 original size:24 final size:24
Alignment explanation
Indices: 63256--63344 Score: 125
Period size: 24 Copynumber: 3.9 Consensus size: 24
63246 GTCCTTCCAT
63256 AATCAGTCCTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
63280 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
63301 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
63323 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
63345 CAGTCTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 62756 -- 63255
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTA
TGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAG
TACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGT
ACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 63345 -- 63844
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
GGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGT
Found at i:63301 original size:199 final size:199
Alignment explanation
Indices: 63060--63418 Score: 560
Period size: 199 Copynumber: 1.8 Consensus size: 199
63050 CCTTTCAAGA
* * ***
63060 CAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 CAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* *
63125 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
65 AATCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
* *
63188 AAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
129 AAAGTATTGACCTTTTTGATAAGGTCAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
63253 CATAAT
194 CATAAT
*
63259 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGA
1 CAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGA
* * * *
63324 ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATAC
66 ATCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAA
63389 AGTATTGACCTTTTTGATAAGGTCAGTACT
131 AGTATTGACCTTTTTGATAAGGTCAGTACT
63419 GATTTCAAGA
Statistics
Matches: 144, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
198 3 0.02
199 137 0.95
200 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (199 bp):
CAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGA
ATCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAA
AGTATTGACCTTTTTGATAAGGTCAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAAT
Left flanking sequence: Indices 62560 -- 63059
CAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTGTTTGTCAAGTGAGTACTAATGGCATTGAATTGCAATGAGTCCTGACCTTTCAAGAAGAATG
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAG
TACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 63419 -- 63918
GATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTAC
TGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
Found at i:63311 original size:19 final size:19
Alignment explanation
Indices: 63284--63358 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
63274 AAGAAGAATG
63284 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63303 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
63327 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63346 AGTCTTGACCTTT
1 AGTCCTGACCTTT
63359 TTGGTAAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.54
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 62784 -- 63283
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGA
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 63359 -- 63858
TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTT
CAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAA
Found at i:63312 original size:43 final size:43
Alignment explanation
Indices: 63259--63485 Score: 239
Period size: 43 Copynumber: 5.3 Consensus size: 43
63249 CTTCCATAAT
* *
63259 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
63302 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*** * * ** *
63345 CAGTCTTGACCTTTTTGGTAAG-GTTAGTCCTGA-CTGTGAAATA
1 CAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCT-TTCAAGA
* ** * * *
63388 CAGTATTGACCTTTTTGATAAG-GTCAGTACTGA--TTTCAAGA
1 CAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*
63429 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
63472 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
63486 TTGGTAAGGT
Statistics
Matches: 152, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
40 6 0.04
41 23 0.15
42 3 0.02
43 113 0.74
44 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 62759 -- 63258
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGG
ACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 63486 -- 63985
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
Found at i:63445 original size:19 final size:19
Alignment explanation
Indices: 63421--63485 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
63411 TCAGTACTGA
63421 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
63440 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
63464 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
63483 TTT
1 TTT
63486 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 62921 -- 63420
AAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACT
GTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCT
GACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 63486 -- 63985
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAA
GGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGAT
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTG
ATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA
Found at i:63459 original size:84 final size:84
Alignment explanation
Indices: 63259--63504 Score: 226
Period size: 84 Copynumber: 2.9 Consensus size: 84
63249 CTTCCATAAT
* * * ** * ** *
63259 CAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACC-TTTCAAGAAG
1 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTGAAAGACAGTATTGACCTTTTTGATAAG
* *
63323 AATCAGTCCTGACCTTTCAAGA
66 -GTCAGTACTGA--TTTCAAGA
*** * ** * *
63345 CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA-CTGTGAAATACAGTATTGACCTTTTTGATAA
1 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT-TGAAAGACAGTATTGACCTTTTTGATAA
63409 GGTCAGTACTGATTTCAAGA
65 GGTCAGTACTGATTTCAAGA
** * *
63429 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTGAAAGACAGTATTGACCTTTTTGATAAG
*
63494 GTCAGTCCTGA
66 GTCAGTACTGA
63505 CTGTGAAATA
Statistics
Matches: 126, Mismatches: 31, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
84 68 0.54
85 4 0.03
86 47 0.37
87 7 0.06
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (84 bp):
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTGAAAGACAGTATTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGA
Left flanking sequence: Indices 62759 -- 63258
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGG
ACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 63505 -- 64004
CTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAA
AGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTT
Found at i:63499 original size:43 final size:42
Alignment explanation
Indices: 63284--63547 Score: 244
Period size: 43 Copynumber: 6.2 Consensus size: 42
63274 AAGAAGAATG
*** *
63284 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
*
63327 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
63370 AGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTC
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *** * **
63413 AGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
63454 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * * *
63497 AGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTG
1 AGTCCTGACT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
63540 AGTACTGA
1 AGTCCTGA
63548 TGACATACAA
Statistics
Matches: 179, Mismatches: 37, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
41 28 0.16
42 5 0.03
43 143 0.80
44 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 62784 -- 63283
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGA
TCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAAGAGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATG
GTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 63548 -- 64047
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
Found at i:63520 original size:127 final size:127
Alignment explanation
Indices: 63294--63548 Score: 483
Period size: 127 Copynumber: 2.0 Consensus size: 127
63284 AGTCCTGACC
*
63294 TTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
63359 TTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
63421 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
*
63486 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGA
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
63548 T
1 T
63549 GACATACAAA
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (127 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 62794 -- 63293
GGTCAGTCCTGACTGTGAAATACAGTATGGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGA
TAGTCTTGATCTTTCAAAAAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAAG
AGTCCTGACCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTC
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTG
AAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 63549 -- 64048
GACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTAC
TGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
Found at i:63588 original size:19 final size:19
Alignment explanation
Indices: 63561--63673 Score: 95
Period size: 19 Copynumber: 5.7 Consensus size: 19
63551 CATACAAATG
*
63561 AGTCTTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63580 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
63604 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
63623 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
63642 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
63661 AGTCTTGACCTTT
1 AGTCCTGACCTTT
63674 TTGGTAAGGT
Statistics
Matches: 75, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 45 0.60
20 2 0.03
21 6 0.08
22 3 0.04
23 1 0.01
24 14 0.19
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 63061 -- 63560
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
TACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 63674 -- 64173
TTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGA
Found at i:63670 original size:81 final size:81
Alignment explanation
Indices: 63561--63789 Score: 245
Period size: 81 Copynumber: 2.9 Consensus size: 81
63551 CATACAAATG
* * **
63561 AGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAG-AAGAATGAGTCCTGACCTTTCAAGACAG
1 AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGTAAG-ATCAGTCCTGACCTTGAAAGACAG
63625 TCTTGACCAGAAGAATC
65 TCTTGACCAGAAGAATC
* *** *
63642 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGTAAGATCAGTCCTGACCTTGAAAGACAGT
63707 CTTGACCAGAAGAATC
66 CTTGACCAGAAGAATC
* * * *** * * *
63723 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGTAAGATCAGTCCTGACCTTGAAAGACAGT
63783 CTTGACC
66 CTTGACC
63790 TTTTTGATAA
Statistics
Matches: 134, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
76 53 0.40
77 2 0.01
81 76 0.57
82 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (81 bp):
AGTCCTGACCTTTCAAGACAGTCCTGACCTTTCAAGTAAGATCAGTCCTGACCTTGAAAGACAGT
CTTGACCAGAAGAATC
Left flanking sequence: Indices 63061 -- 63560
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
TACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 63790 -- 64289
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATA
CAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
Found at i:63703 original size:43 final size:42
Alignment explanation
Indices: 63640--63833 Score: 167
Period size: 43 Copynumber: 4.8 Consensus size: 42
63630 ACCAGAAGAA
**
63640 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
63683 TCAGTCCTGACCTTGAAAGACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
63721 TCAGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
63759 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* **
63802 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTT
1 TCAGTCCTGACTTGAAAGACAGTCTTGACCTTT
63834 CCATTTTTGG
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
33 12 0.10
35 1 0.01
37 3 0.02
38 21 0.17
39 3 0.02
41 21 0.17
43 60 0.50
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 63140 -- 63639
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTT
GATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACC
TTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTATTGACCT
TTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 63834 -- 64333
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAA
AATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGGT
ATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCC
TGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCA
Found at i:63712 original size:19 final size:19
Alignment explanation
Indices: 63604--63713 Score: 53
Period size: 19 Copynumber: 5.5 Consensus size: 19
63594 AAGAAGAATG
**
63604 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTGAAAGAC
* *
63623 AGTCTTGACC-AG-AAGAATC
1 AGTCCTGACCTTGAAAG-A-C
**
63642 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTGAAAGAC
* * *
63661 AGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACC---TT-G-AAAGAC
63685 AGTCCTGACCTTGAAAGAC
1 AGTCCTGACCTTGAAAGAC
*
63704 AGTCTTGACC
1 AGTCCTGACC
63714 AGAAGAATCA
Statistics
Matches: 67, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
17 3 0.04
18 1 0.01
19 42 0.63
20 2 0.03
21 5 0.07
22 2 0.03
24 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (19 bp):
AGTCCTGACCTTGAAAGAC
Left flanking sequence: Indices 63104 -- 63603
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 63714 -- 64213
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCC
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGT
ACTGATGACATACAAATGAGTCTTGACCTTTCACAAAAGTCTTCA
Found at i:63777 original size:76 final size:78
Alignment explanation
Indices: 63604--63789 Score: 270
Period size: 76 Copynumber: 2.4 Consensus size: 78
63594 AAGAAGAATG
*
63604 AGTCCTGACCTTT-CAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTG
63668 ACCTTTTTGGTAAGGTC
62 ACCTTTTTGGTAAGGTC
* * *
63685 AGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
*
63748 TTTTGGTAAGGTT
66 TTTTGGTAAGGTC
63761 AGTCCTGACTTTGAAAGACAGTCTTGACC
1 AGTCCTGACTTTGAAAGACAGTCTTGACC
63790 TTTTTGATAA
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
76 53 0.54
77 2 0.02
80 3 0.03
81 40 0.41
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (78 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCT
TTTTGGTAAGGTC
Left flanking sequence: Indices 63104 -- 63603
AGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATAAAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTTAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
CAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATG
Right flanking sequence: Indices 63790 -- 64289
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATA
CAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
Found at i:63958 original size:43 final size:43
Alignment explanation
Indices: 63911--64066 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 43
63901 CTGACCTTTC
63911 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* *
63954 AAGACAGTCTTGACC-----AG-AAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGA
* * * * *
63987 CAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
* * *
64030 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
64067 TGACATACAA
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
33 12 0.14
35 1 0.01
37 3 0.04
38 21 0.25
39 2 0.02
41 1 0.01
43 45 0.53
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 63411 -- 63910
TCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 64067 -- 64566
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
TCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGA
CCTTTCAAGAAAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGAT
TCAGGTCAGACAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAA
AGGTTATGGAAAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATACCAAAATGGCAA
TTGTATGCCATTAGTACTGACCATACCACAAATTGTATGCCATTA
Found at i:64132 original size:43 final size:43
Alignment explanation
Indices: 64076--64157 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
64066 ATGACATACA
*
64076 AATGAGTCTTGACCTTTCAATCA-AGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAA-CACAGTCCTGACCTTTCAAGAAG
* *
64119 AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA
1 AATGAGTCCTGACCTTTCAACACAGTCCTGACCTTTCAA
64158 AAATGGTGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (43 bp):
AATGAGTCCTGACCTTTCAACACAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 63576 -- 64075
AGACAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAG
TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
Right flanking sequence: Indices 64158 -- 64657
AAATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGG
TATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTC
CTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCAAGAAAGTCCTGACTTTTCC
ATAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTG
CTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAAAGGTTATGGAAAGGAAAGGCAAAATT
GCAATTGTATGCCATTATCCATCCATACCAAAATGGCAATTGTATGCCATTAGTACTGACCATAC
CACAAATTGTATGCCATTAGTGCTGACTATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTAT
GGAAAGGAAAGGCAAAATTGCAATTATATGCCATTATCCATACCA
Found at i:64199 original size:64 final size:64
Alignment explanation
Indices: 64119--64258 Score: 176
Period size: 64 Copynumber: 2.2 Consensus size: 64
64109 TTTCAAGAAG
* * *
64119 AATGAGTCCTGACCTTTCA-AGACAGTCTTGACCT-TTCAAAAATGGTGAGTACTGATGACATAC
1 AATGAGTCTTGACCTTTCACA-AAAGTCTTCACCTGTT-AAAAATGGTGAGTACTGATGACATAC
64182 A
64 A
* ****
64183 AATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACA
1 AATGAGTCTTGACCTTTCACAAAAGTCTTCACCTGTTAAAAATGGTGAGTACTGATGACATACA
64247 AATGAGTCTTGA
1 AATGAGTCTTGA
64259 TGGTCATTCC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
64 63 0.95
65 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (64 bp):
AATGAGTCTTGACCTTTCACAAAAGTCTTCACCTGTTAAAAATGGTGAGTACTGATGACATACA
Left flanking sequence: Indices 63619 -- 64118
AGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACCTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAG
Right flanking sequence: Indices 64259 -- 64758
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCC
TGACCTTTCAAGAAAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTGAAGGTCACT
GATTCAGGTCAGACAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATG
GAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATACCAAAATGG
CAATTGTATGCCATTAGTACTGACCATACCACAAATTGTATGCCATTAGTGCTGACTATCACAAA
AAATGGAAAGGCAATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTATATGCCATTA
TCCATACCAAAATGGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATGGAAAGGTCAGGAC
TTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAA
Found at i:64327 original size:19 final size:18
Alignment explanation
Indices: 64284--64353 Score: 81
Period size: 19 Copynumber: 3.9 Consensus size: 18
64274 CATTCTCATT
64284 AGTCCTGACCTTT-CAG-
1 AGTCCTGACCTTTCCAGA
*
64300 AGTCTTGACCTTTCCAGA
1 AGTCCTGACCTTTCCAGA
*
64318 CAGTCCTGACCTTTCAAGAA
1 -AGTCCTGACCTTTCCAG-A
*
64338 AGTCCTGACTTTTCCA
1 AGTCCTGACCTTTCCA
64354 TAAAATCCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
16 12 0.27
17 3 0.07
19 29 0.64
20 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (18 bp):
AGTCCTGACCTTTCCAGA
Left flanking sequence: Indices 63784 -- 64283
TTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGG
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACC
TTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 64354 -- 64853
TAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGC
TCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAAAGGTTATGGAAAGGAAAGGCAAAATTG
CAATTGTATGCCATTATCCATCCATACCAAAATGGCAATTGTATGCCATTAGTACTGACCATACC
ACAAATTGTATGCCATTAGTGCTGACTATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTATG
GAAAGGAAAGGCAAAATTGCAATTATATGCCATTATCCATACCAAAATGGCAATTGTATGCTCTT
AGTACTGACTATCACAAAAATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
Found at i:64362 original size:19 final size:19
Alignment explanation
Indices: 64305--64362 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
64295 TTCAGAGTCT
* * *
64305 TGACCTTTCCAGACAGTCC
1 TGACCTTTCAAGAAAATCC
*
64324 TGACCTTTCAAGAAAGTCC
1 TGACCTTTCAAGAAAATCC
* * *
64343 TGACTTTTCCATAAAATCC
1 TGACCTTTCAAGAAAATCC
64362 T
1 T
64363 TTCCATTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (19 bp):
TGACCTTTCAAGAAAATCC
Left flanking sequence: Indices 63805 -- 64304
GTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
AGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGA
TCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCAAAAATGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTTCACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGAT
GGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
Right flanking sequence: Indices 64363 -- 64862
TTCCATTAATGAGACTGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTCACCCTTC
TTAATGAAAAGGAAAGGAGATTTATGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTGTAT
GCCATTATCCATCCATACCAAAATGGCAATTGTATGCCATTAGTACTGACCATACCACAAATTGT
ATGCCATTAGTGCTGACTATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTATGGAAAGGAAA
GGCAAAATTGCAATTATATGCCATTATCCATACCAAAATGGCAATTGTATGCTCTTAGTACTGAC
TATCACAAAAATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
Found at i:64728 original size:19 final size:19
Alignment explanation
Indices: 64701--64768 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
64691 CACAAAAATG
64701 GAAAGGTCAGGACTTTCTT
1 GAAAGGTCAGGACTTTCTT
* *
64720 GAAAAGTCAGGACTTTCTG
1 GAAAGGTCAGGACTTTCTT
*
64739 GAAAGGTCAAGAC--TC-T
1 GAAAGGTCAGGACTTTCTT
64755 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
64769 AATGAGAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
16 12 0.29
17 2 0.05
19 28 0.67
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (19 bp):
GAAAGGTCAGGACTTTCTT
Left flanking sequence: Indices 64201 -- 64700
ACAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCAT
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTT
TCAAGAAAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGATTCAG
GTCAGACAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAAAGGT
TATGGAAAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATACCAAAATGGCAATTGT
ATGCCATTAGTACTGACCATACCACAAATTGTATGCCATTAGTGCTGACTATCACAAAAAATGGA
AAGGCAATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTATATGCCATTATCCATAC
CAAAATGGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATG
Right flanking sequence: Indices 64769 -- 65268
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
Found at i:64963 original size:76 final size:79
Alignment explanation
Indices: 64837--65533 Score: 317
Period size: 76 Copynumber: 8.4 Consensus size: 79
64827 TTATCAAAAA
64837 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
64899 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
64913 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
64978 CAGGACTGATTCTTCTT
64 CAGGACTGATTCTTC-T
* * **
64995 GAAAGGTCAAGAC--TC--TGAAAGGTCAGGACTAA--TGAGAATGATTGAGGAATGACCATCAA
1 ----GGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTTACCA--A---A--AA-G---ATCAA
* * * * *
65054 GACTCAT-TTGTATGTCATCAGTACTCACCTT-ATCAAAAA
50 GACT-ATCTTG-AAGT---CAGGACTGA--TTCTTC----T
* * *
65093 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
65155 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
65169 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
**
65234 CAGGACT--TT-TGAT
64 CAGGACTGATTCTTCT
* * * * * * *
65247 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTAACCTTACCAAAAA--G--A--T
* * * * *
65310 CAAGACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
47 CAAGACTATCTTGAAGTCAGGACTGA--TTCTTC----T
65348 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
65410 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
65424 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
65489 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
*
65505 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
65534 GATTATGGAA
Statistics
Matches: 471, Mismatches: 70, Indels: 155
0.68 0.10 0.22
Matches are distributed among these distances:
76 159 0.34
77 9 0.02
78 5 0.01
79 9 0.02
80 8 0.02
81 85 0.18
82 5 0.01
83 13 0.03
84 13 0.03
85 1 0.00
86 12 0.03
87 4 0.01
88 12 0.03
89 19 0.04
90 18 0.04
91 4 0.01
92 14 0.03
93 9 0.02
94 20 0.04
95 16 0.03
96 3 0.01
97 13 0.03
98 8 0.02
99 3 0.01
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (79 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 64337 -- 64836
AAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGATTCAGGTCAGA
CAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAAAGGTTATGGA
AAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATACCAAAATGGCAATTGTATGCCA
TTAGTACTGACCATACCACAAATTGTATGCCATTAGTGCTGACTATCACAAAAAATGGAAAGGCA
ATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTATATGCCATTATCCATACCAAAAT
GGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATGGAAAGGTCAGGACTTTCTTGAAAAGT
CAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 65534 -- 66033
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGG
Found at i:64985 original size:43 final size:42
Alignment explanation
Indices: 64815--64986 Score: 139
Period size: 43 Copynumber: 4.2 Consensus size: 42
64805 TTGTATGTCA
* * * *
64815 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* * *
64858 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * *
64896 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
64934 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
64977 TCAGGACTGA
1 TCAGGACTGA
64987 TTCTTCTTGA
Statistics
Matches: 100, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 54 0.54
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 64315 -- 64814
AGACAGTCCTGACCTTTCAAGAAAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTG
AAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGG
AGATTTATGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATA
CCAAAATGGCAATTGTATGCCATTAGTACTGACCATACCACAAATTGTATGCCATTAGTGCTGAC
TATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTAT
ATGCCATTATCCATACCAAAATGGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATGGAAA
GGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 64987 -- 65486
TTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Found at i:65015 original size:16 final size:16
Alignment explanation
Indices: 64994--65024 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64984 TGATTCTTCT
64994 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
65010 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
65025 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 64494 -- 64993
CCATTATCCATCCATACCAAAATGGCAATTGTATGCCATTAGTACTGACCATACCACAAATTGTA
TGCCATTAGTGCTGACTATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTATGGAAAGGAAAG
GCAAAATTGCAATTATATGCCATTATCCATACCAAAATGGCAATTGTATGCTCTTAGTACTGACT
ATCACAAAAATGGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 65025 -- 65524
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:65034 original size:256 final size:252
Alignment explanation
Indices: 64702--65495 Score: 1099
Period size: 256 Copynumber: 3.1 Consensus size: 252
64692 ACAAAAATGG
* * * *
64702 AAAGGTCAGGACTTTCTTGAAAAGTCAGGAC-TTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGG
64766 ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
66 ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
64831 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
131 CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
*
64896 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
196 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
64953 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---TT-TTCTTGAAAGGTCAAGACTCTGAAAGGT
65018 CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
62 CAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
* * *
65083 TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
127 TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
65148 CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
192 CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
** * * * **
65209 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC-CAATTGCAATTGT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTCTTGAAAGGTCAAGACTC---TG-AAAGGT
* * * * * * ** * * *
65273 -ATG-C-CATTAGTACTCACCTGACCAAAAATGGA-AAGGTCAAGACT-GTCTTG-A---AATCA
62 CAGGACTAATGAG-AATGA-TTG---AGGAAT-GACCA--TCAAGACTCAT-TTGTATGTCATCA
*
65329 GTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
118 GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
65394 CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA-AGGTCAGGACTGACCT
183 CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCT
65458 TACCAA
247 TACCAA
65464 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
65496 GATTCTTCTG
Statistics
Matches: 494, Mismatches: 30, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
251 29 0.06
252 17 0.03
253 6 0.01
254 7 0.01
255 170 0.34
256 245 0.50
257 5 0.01
258 4 0.01
259 11 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (252 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 64202 -- 64701
CAAAAGTCTTCATCTGTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATT
CCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGACAGTCCTGACCTTT
CAAGAAAGTCCTGACTTTTCCATAAAATCCTTTCCATTAATGAGACTGAAGGTCACTGATTCAGG
TCAGACAAATCCTGAAAAGTGCTCACCCTTCTTAATGAAAAGGAAAGGAGATTTATGGAAAGGTT
ATGGAAAGGAAAGGCAAAATTGCAATTGTATGCCATTATCCATCCATACCAAAATGGCAATTGTA
TGCCATTAGTACTGACCATACCACAAATTGTATGCCATTAGTGCTGACTATCACAAAAAATGGAA
AGGCAATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAATTATATGCCATTATCCATACC
AAAATGGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATGG
Right flanking sequence: Indices 65496 -- 65995
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:65134 original size:43 final size:43
Alignment explanation
Indices: 65071--65223 Score: 148
Period size: 43 Copynumber: 3.8 Consensus size: 43
65061 TTGTATGTCA
* * *
65071 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATTTCACAG
* **
65114 TCAGGACTGACCTTACCAAAAAGATCAAGAC--TA--TCTGA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATTTCACAG
* *
65152 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTATTTCACAG
65190 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
65224 CTTGAAAGGT
Statistics
Matches: 85, Mismatches: 13, Indels: 24
0.70 0.11 0.20
Matches are distributed among these distances:
33 8 0.09
35 2 0.02
37 7 0.08
38 20 0.24
39 7 0.08
41 2 0.02
43 39 0.46
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTATTTCACAG
Left flanking sequence: Indices 64571 -- 65070
TGACTATCACAAAAAATGGAAAGGCAATTTTGGAAAGGTTATGGAAAGGAAAGGCAAAATTGCAA
TTATATGCCATTATCCATACCAAAATGGCAATTGTATGCTCTTAGTACTGACTATCACAAAAATG
GAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGG
ACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 65224 -- 65723
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTC
Found at i:65350 original size:41 final size:43
Alignment explanation
Indices: 65304--65495 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
65294 CCAAAAATGG
* * * *
65304 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
65345 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
65388 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
65423 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
65464 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
65496 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 64804 -- 65303
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 65496 -- 65995
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACAAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:65449 original size:38 final size:38
Alignment explanation
Indices: 65407--65537 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
65397 GACTATCTGA
* **
65407 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
65445 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
65488 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
65526 TCAGGACTGATT
1 TCAGGACTGATT
65538 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 64907 -- 65406
TCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 65538 -- 66037
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTA
TTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTG
Found at i:65488 original size:19 final size:19
Alignment explanation
Indices: 65464--65534 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
65454 ACCTTACCAA
65464 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
65483 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
65503 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
65521 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
65535 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 64964 -- 65463
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 65535 -- 66034
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTT
GATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGA
Found at i:65675 original size:43 final size:42
Alignment explanation
Indices: 65612--65791 Score: 146
Period size: 43 Copynumber: 4.2 Consensus size: 42
65602 TTGTATGTCA
* * * *
65612 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
65655 TCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** *** * * * * *
65697 ATCAGGACTGATTCTT-CTTGAAAGGTCCATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
* *
65741 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
65784 TCAGGACT
1 TCAGGACT
65792 TTTGATGGAA
Statistics
Matches: 102, Mismatches: 30, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
42 13 0.13
43 80 0.78
44 9 0.09
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 65112 -- 65611
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 65792 -- 66291
TTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCA
Found at i:65756 original size:86 final size:86
Alignment explanation
Indices: 65631--65791 Score: 259
Period size: 86 Copynumber: 1.9 Consensus size: 86
65621 ACCTTATCAA
*
65631 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
1 AAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
65696 GATCAGGACTGATTCTTCTTG
66 GATCAGGACTGATTCTTCTTG
* * * * *
65717 AAAGGTCCATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
*
65782 GGTCAGGACT
66 GATCAGGACT
65792 TTTGATGGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 68 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (86 bp):
AAAGGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 65131 -- 65630
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 65792 -- 66291
TTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
TACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCA
Found at i:65878 original size:19 final size:19
Alignment explanation
Indices: 65854--65930 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 19
65844 ACCAAAAATG
*
65854 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTCTCTT
*
65873 GAAAGGTCAGGACTCATTCTTCT
1 GAAAGGTCAAGACTC--TC-T-T
* *
65896 GGAAAGGTCAGGACTCTTTT
1 -GAAAGGTCAAGACTCTCTT
65916 GAAAGGTCAAGACTC
1 GAAAGGTCAAGACTC
65931 ATTTGTATGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 2 0.04
23 1 0.02
24 15 0.31
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (19 bp):
GAAAGGTCAAGACTCTCTT
Left flanking sequence: Indices 65354 -- 65853
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCCATACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 65931 -- 66430
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACAAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTCTGGTCAAGACTGTATTT
CAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
Done.