123.fas.2.7.7.80.10.50.500.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  19  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561458--561523	19	3.2	19	76	19	78	31	13	25	28	1.94
561546--561709	81	2.0	81	92	0	274	31	20	21	26	1.98
561667--561742	19	3.7	19	79	16	89	30	15	28	25	1.96
561459--561745	124	2.3	124	82	6	348	32	18	21	27	1.96
561459--561745	43	6.8	43	76	10	281	32	18	21	27	1.96
561820--561975	43	3.9	43	68	19	136	32	23	16	26	1.96
561958--562151	99	2.0	99	84	7	254	34	19	21	25	1.96
562067--562112	24	1.9	24	100	0	92	26	19	21	32	1.97
562120--562277	28	5.6	28	97	1	291	37	25	11	25	1.89
562800--562900	28	3.6	28	94	2	159	36	25	13	23	1.92
564422--564527	55	1.9	55	84	7	144	31	16	20	31	1.95
564752--564824	28	2.6	29	91	6	123	26	12	26	35	1.91
564773--564834	28	2.2	28	88	0	88	29	12	22	35	1.91
564836--564908	19	3.8	19	76	8	85	23	27	19	30	1.98
564834--564913	39	2.0	40	88	7	119	26	26	17	30	1.97
565023--565659	43	15.0	42	72	14	332	32	19	20	26	1.97
565023--565132	19	5.0	24	64	20	78	36	22	18	22	1.95
565119--565233	24	5.7	19	73	22	92	30	16	26	26	1.97
565119--565217	24	4.6	23	77	17	106	30	16	26	27	1.96
565203--565233	16	1.9	16	93	0	53	35	16	29	19	1.93
565398--565474	24	3.4	24	70	17	83	35	22	23	19	1.96
565418--565482	19	3.2	19	68	19	58	36	18	23	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565036--565659	165	3.7	166	73	12	556	32	19	21	26	1.97
565583--565658	19	3.7	19	79	16	89	30	15	27	26	1.96
565597--565681	24	3.8	24	80	15	117	27	16	27	29	1.97
565747--565903	76	2.0	79	88	6	239	30	22	19	27	1.98
565725--565896	43	4.2	43	70	18	143	33	22	18	25	1.97
565877--566010	24	5.8	23	67	22	84	29	16	26	28	1.97
565937--566011	19	3.7	19	75	15	78	28	18	25	28	1.98
565969--566014	24	1.9	24	100	0	92	26	19	21	32	1.97
566077--566158	20	3.7	20	74	22	83	30	23	12	34	1.91
566075--566186	48	2.3	48	93	0	188	33	23	11	32	1.90
566205--566235	16	1.9	16	100	0	62	32	19	32	16	1.94
566330--566485	43	3.9	43	66	19	127	32	23	16	26	1.96
566482--566544	24	2.9	22	79	15	78	25	17	25	31	1.97
566468--566544	19	3.8	20	77	15	77	28	16	25	28	1.97
566506--566558	19	3.1	17	84	12	72	28	15	30	26	1.96
566518--566661	76	1.9	76	100	0	288	36	13	27	22	1.92
566604--566634	16	1.9	16	100	0	62	32	16	32	19	1.94
566655--566736	43	1.9	43	87	5	121	35	25	14	24	1.94
566806--566988	28	6.6	28	86	6	196	37	24	10	28	1.88
566818--566974	82	1.9	83	87	11	234	38	24	10	27	1.87
566806--566988	56	3.3	56	82	13	227	37	24	10	28	1.88
567000--567045	16	2.6	17	80	13	58	30	17	32	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567071--567206	64	2.1	64	89	2	202	33	20	16	29	1.94
567156--567325	43	4.2	42	69	18	135	33	22	18	25	1.96
567178--567620	76	5.4	78	71	19	323	32	20	20	25	1.97
567389--567580	43	4.7	43	69	17	142	34	20	19	25	1.96
567492--567622	38	3.3	38	79	14	156	27	19	24	29	1.98
567549--567619	19	3.7	19	73	14	74	28	16	28	26	1.97
567697--567866	43	4.2	42	68	18	126	33	22	18	25	1.96
567297--567866	286	2.0	291	91	4	940	32	20	20	26	1.97
568091--568136	16	2.6	17	80	13	58	30	17	32	19	1.95
568278--568463	28	6.6	28	98	1	347	38	25	11	25	1.89
570162--570490	43	7.8	42	77	11	219	32	19	20	27	1.97
570231--570307	24	3.4	24	65	17	65	35	23	19	22	1.96
570212--570282	19	3.5	19	68	17	52	30	22	19	26	1.98
570294--570396	19	5.2	19	72	19	93	29	15	25	30	1.96
570296--570396	38	2.5	40	88	9	152	27	15	25	30	1.96
570170--570490	165	1.9	167	93	1	556	32	19	20	27	1.97
570553--570628	19	3.7	19	75	16	71	30	17	27	25	1.97
570642--570854	43	5.2	43	74	14	198	33	22	18	25	1.96
570741--570811	19	3.5	19	71	17	61	30	22	19	26	1.98
570760--570836	24	3.4	24	67	17	65	36	22	20	20	1.95
570986--571091	28	3.6	28	82	16	142	36	24	12	26	1.91
570992--571085	33	3.0	32	86	13	135	38	22	11	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572573--572671	28	3.5	28	97	2	182	26	12	24	37	1.90
572802--573682	43	21.2	42	70	15	243	27	19	20	32	1.97
572821--573200	76	4.7	77	74	15	356	27	18	21	32	1.96
572985--573069	24	3.8	24	77	20	110	31	23	16	28	1.96
573008--573074	19	3.3	19	73	18	71	29	26	16	26	1.97
573299--573577	19	13.7	19	68	20	120	29	24	17	29	1.97
573478--573563	24	3.8	23	77	14	99	30	26	15	27	1.96
573589--573659	19	3.5	19	73	17	70	26	19	21	32	1.97
573810--573881	19	3.7	19	73	21	60	23	27	16	31	1.96
573810--573934	43	3.0	43	82	8	125	24	22	20	33	1.97
573978--574066	24	3.9	24	80	14	125	31	24	16	26	1.97
574006--574080	19	3.7	19	78	16	87	26	26	16	30	1.96
573981--574207	43	5.3	43	82	6	257	27	22	18	31	1.97
574143--574207	19	3.2	19	72	19	67	29	24	15	30	1.96
574006--574269	43	6.2	42	81	4	271	26	20	20	32	1.97
574016--574270	127	2.0	127	95	0	456	27	19	20	33	1.96
574283--574400	19	5.7	19	74	18	92	27	25	16	29	1.97
574301--574386	24	3.8	24	79	14	119	30	25	17	26	1.97
574279--574616	43	7.9	43	79	6	285	28	20	17	32	1.96
574283--574616	86	3.9	84	77	6	323	28	20	17	32	1.96
573826--574570	320	2.3	323	94	1	1300	27	20	19	32	1.97
574463--574527	19	3.2	19	76	19	76	29	24	13	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574307--574620	127	2.5	128	86	4	481	29	19	17	32	1.95
574293--574633	170	2.0	169	81	5	393	29	19	18	32	1.96
574692--574744	21	2.6	21	81	3	54	18	30	11	39	1.86
574810--574840	16	1.9	16	93	0	53	19	29	16	35	1.93
574810--574934	43	3.0	43	85	8	143	24	21	20	33	1.97
574978--575066	24	3.9	24	80	14	125	31	24	16	26	1.97
575006--575080	19	3.7	19	78	16	87	26	26	16	30	1.96
574981--575120	43	3.3	43	88	2	183	27	25	18	29	1.98
575006--575196	76	2.4	78	84	8	233	26	21	19	31	1.98
575144--575240	43	2.3	41	87	3	131	23	16	20	39	1.92
575304--575473	43	4.2	42	70	18	135	25	18	22	32	1.97
575323--575708	76	4.7	77	68	20	264	26	19	20	32	1.97
575577--575729	43	3.8	43	66	19	121	26	16	23	33	1.96
575776--575806	16	1.9	16	93	0	53	19	29	16	35	1.93
575007--576005	256	3.9	253	82	10	1104	26	20	20	32	1.97
575792--575876	24	3.8	24	80	15	117	30	24	16	28	1.96
575776--575890	19	5.7	19	74	21	92	26	26	16	30	1.97
575776--575976	43	4.8	42	85	7	205	25	22	19	32	1.97
575902--575972	19	3.5	19	71	17	61	26	19	22	30	1.98
575814--575986	43	4.0	43	87	4	217	25	20	20	33	1.97
576170--576322	43	3.8	43	67	19	121	26	16	23	33	1.95
576400--576673	19	13.7	19	66	20	105	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576397--576670	38	6.9	38	79	13	277	30	23	17	28	1.97
576399--576736	43	8.3	43	77	13	261	28	22	18	30	1.98
576399--576797	81	4.9	81	74	12	359	28	21	18	30	1.97
576685--576755	19	3.5	19	68	17	52	26	19	22	30	1.98
576660--576736	24	3.4	24	65	17	65	22	19	23	35	1.96
576656--576756	43	2.3	43	94	0	175	25	18	22	32	1.97
576480--576880	124	3.3	120	73	17	337	30	21	18	29	1.97
576825--576884	19	2.9	21	70	12	61	28	26	13	31	1.94
584447--584860	43	9.9	43	78	11	371	31	17	22	28	1.97
584516--584592	24	3.4	24	67	17	65	36	22	20	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20