123.fas.2.7.7.80.10.50.500.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  18  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545605--545724	28	4.3	28	95	4	208	38	25	10	25	1.88
545746--545873	43	3.0	43	90	2	186	35	21	18	24	1.95
545760--545830	19	3.5	19	70	17	52	32	21	19	26	1.97
545842--545916	19	3.7	19	78	16	87	30	16	28	25	1.96
545859--545944	24	3.8	23	77	16	108	27	16	26	29	1.97
545799--545941	43	3.3	42	87	3	171	31	18	23	25	1.98
545746--545916	86	2.0	86	82	6	213	33	19	21	25	1.97
545988--546112	43	3.0	43	82	8	125	33	20	21	24	1.97
546082--546112	16	1.9	16	93	0	53	35	16	29	19	1.93
546320--546760	76	5.4	78	70	16	286	32	20	21	25	1.97
546298--546467	43	4.2	42	67	18	117	33	22	18	25	1.97
546634--546769	38	3.4	38	79	13	157	26	20	22	30	1.98
546691--546760	19	3.7	19	72	14	72	28	17	27	27	1.97
546531--546760	43	5.8	41	72	16	166	32	20	20	26	1.97
546743--546788	24	1.9	24	100	0	92	26	19	21	32	1.97
546796--546897	28	3.6	28	98	0	195	37	25	11	25	1.90
547073--547231	76	2.0	79	87	6	234	30	21	20	27	1.98
547051--547222	43	4.2	42	69	18	130	33	22	18	25	1.96
547263--547328	19	3.7	18	76	11	64	30	13	31	24	1.94
547279--547328	16	2.9	16	82	11	64	32	16	30	22	1.95
547437--547554	43	2.7	43	89	2	166	35	20	20	23	1.96
547460--547536	24	3.4	24	68	17	74	36	22	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547441--547511	19	3.5	19	70	17	52	32	21	19	26	1.97
547686--547749	28	2.3	28	94	5	112	37	25	10	26	1.89
547722--547806	44	2.0	43	82	15	104	40	28	8	23	1.83
550635--550790	43	3.9	43	66	19	127	32	23	16	26	1.96
550909--551130	76	2.9	76	90	4	329	30	20	21	27	1.98
551004--551134	38	3.3	38	79	14	156	27	19	24	29	1.98
551061--551131	19	3.7	19	73	14	74	28	16	28	26	1.97
551209--551378	43	4.2	42	67	18	117	34	22	17	25	1.96
551456--551518	24	2.9	22	75	15	69	26	17	23	31	1.97
551441--551532	19	4.7	19	75	16	73	30	16	27	26	1.97
551502--551532	16	1.9	16	100	0	62	32	16	32	19	1.94
551580--551675	32	3.1	32	82	14	130	37	20	11	30	1.88
551586--551718	28	4.6	28	89	7	180	36	23	11	28	1.89
551730--551775	16	2.6	17	80	13	58	30	17	32	19	1.95
551900--551965	21	3.2	21	64	23	59	28	25	12	33	1.92
551956--552125	43	4.2	42	67	18	117	33	22	17	25	1.96
552306--552376	19	3.5	19	70	17	61	29	23	19	26	1.98
552292--552923	43	15.0	43	72	15	359	32	20	20	26	1.97
552113--552358	119	2.1	116	83	8	297	33	19	22	25	1.97
552388--552497	19	5.7	19	69	21	77	29	17	26	27	1.97
552391--552466	38	2.0	38	100	0	152	23	18	26	31	1.97
552467--552497	16	1.9	16	93	0	53	35	16	29	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552273--553112	261	3.3	252	79	12	958	32	20	20	27	1.97
552567--552637	19	3.5	19	71	17	61	30	22	19	26	1.98
552649--552751	19	5.2	19	72	19	93	29	15	25	30	1.96
552652--552963	38	7.8	39	72	17	193	29	19	22	28	1.98
552544--552923	165	2.3	161	85	4	546	32	20	20	26	1.97
552890--552960	19	3.7	19	73	14	74	28	16	28	26	1.97
553038--553207	43	4.2	42	68	18	126	33	22	18	25	1.96
552747--554069	286	4.6	286	73	15	1310	32	20	19	26	1.97
553270--553346	19	3.8	19	77	15	73	29	18	25	25	1.98
553287--553350	24	3.0	21	78	19	78	28	17	23	31	1.97
553268--553349	43	1.9	43	89	0	128	29	17	25	28	1.97
553018--553613	321	1.9	321	99	0	1174	33	20	19	26	1.97
553359--553528	43	4.2	42	67	18	117	33	22	18	25	1.96
553381--553821	76	5.4	78	70	16	295	32	20	20	26	1.97
553592--553783	43	4.7	43	69	17	142	34	20	19	25	1.96
553695--553825	38	3.3	38	79	14	156	27	19	24	29	1.98
553752--553822	19	3.7	19	73	14	74	28	16	28	26	1.97
554038--554231	99	2.0	99	84	7	254	34	19	21	25	1.96
554147--554192	24	1.9	24	100	0	92	26	19	21	32	1.97
554200--554302	28	3.7	28	94	5	190	37	25	10	26	1.88
554320--554409	37	2.4	37	85	7	121	33	21	16	28	1.95
556415--556499	43	2.0	43	88	4	127	34	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556604--556634	16	1.9	16	93	0	53	35	16	29	19	1.93
556681--557022	43	8.2	42	75	10	294	32	20	20	26	1.97
556702--557030	84	4.0	80	74	14	262	31	19	20	27	1.97
556819--557021	19	9.7	19	67	23	97	32	17	23	27	1.97
556779--557010	127	1.8	127	96	1	430	31	18	21	27	1.97
556960--557044	24	3.8	24	81	15	126	27	16	25	30	1.97
557171--557510	43	8.2	42	72	12	238	32	20	20	27	1.97
557192--557520	84	4.0	79	75	13	240	31	20	20	27	1.97
556654--557583	490	1.9	489	98	0	1788	32	20	20	27	1.97
557309--557511	19	9.7	19	67	23	97	31	18	23	27	1.97
557269--557500	127	1.8	127	96	1	430	31	19	21	27	1.97
557309--557645	43	7.7	43	79	9	353	30	17	24	27	1.97
557553--557646	19	4.7	19	80	12	116	27	18	25	28	1.98
557471--557643	92	1.9	91	92	3	294	28	16	26	28	1.97
557712--557793	20	3.7	20	74	22	83	30	23	12	34	1.91
557710--557821	48	2.3	48	93	0	188	33	23	11	32	1.90
557965--558134	43	4.2	42	67	18	117	33	22	18	25	1.96
557987--558400	76	5.0	78	70	18	277	33	20	19	26	1.97
558198--558432	43	5.7	43	72	14	142	33	20	20	26	1.96
558358--558432	19	3.7	19	78	16	87	30	16	28	25	1.96
558376--558456	24	3.6	24	77	16	100	28	16	29	25	1.96
558358--558476	43	2.8	43	93	0	193	28	16	27	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558376--558476	19	4.6	24	75	17	96	27	16	28	26	1.97
558461--558491	16	1.9	16	100	0	62	32	16	32	19	1.94
558530--558560	16	1.9	16	100	0	62	32	16	32	19	1.94
558451--558579	69	1.9	69	100	0	258	34	13	28	23	1.92
558579--558676	43	2.3	42	85	3	133	40	21	15	22	1.90
558732--558914	28	6.6	28	86	6	212	36	24	10	27	1.89
558846--558931	28	3.1	28	78	9	70	38	25	10	25	1.88
558926--558971	16	2.6	17	80	13	58	30	17	32	19	1.95
558997--559132	64	2.1	64	89	2	202	33	20	16	29	1.94
559082--559464	43	9.2	42	71	11	268	34	20	18	26	1.95
559101--559331	86	2.7	84	87	2	318	34	18	19	27	1.95
559230--559294	19	3.2	19	76	19	76	32	13	24	29	1.94
559611--559780	43	4.2	42	67	18	117	33	22	18	25	1.96
559633--560044	76	5.0	78	70	17	280	33	20	19	26	1.96
559844--560078	43	5.7	43	73	14	151	34	19	19	26	1.96
560004--560078	19	3.7	19	78	16	87	30	16	26	26	1.96
560018--560106	24	3.9	24	80	14	125	26	16	24	31	1.97
560004--560103	43	2.3	43	96	0	182	29	17	26	28	1.97
560150--560274	43	3.0	43	82	8	125	33	20	21	24	1.97
560244--560274	16	1.9	16	93	0	53	35	16	29	19	1.93
560554--560745	43	4.7	41	69	18	141	33	20	19	25	1.97
560674--560784	19	5.6	19	68	17	64	27	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560657--560787	38	3.3	38	80	14	165	26	19	24	29	1.99
560598--560785	76	2.4	79	90	4	283	30	20	22	26	1.98
560862--561031	43	4.2	42	67	18	117	33	22	17	25	1.96
561094--561170	19	3.8	19	77	15	73	29	18	25	25	1.98
561111--561174	24	3.0	21	78	19	78	28	17	23	31	1.97
561092--561173	43	1.9	43	89	0	128	29	17	25	28	1.97
561183--561741	43	13.2	43	67	16	199	33	19	20	26	1.97
561282--561352	19	3.5	19	69	23	54	33	19	19	26	1.96
561301--561377	24	3.4	24	68	17	74	36	22	19	22	1.95
560842--561799	321	2.9	318	82	9	984	32	20	20	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20