123.fas.2.7.7.80.10.50.500.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  17  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503212--503500	157	1.8	157	95	0	524	26	18	21	33	1.96
503164--503520	157	2.2	158	85	4	511	26	17	22	33	1.96
503565--503596	16	2.0	16	93	0	55	18	28	12	40	1.87
503582--503638	19	2.6	22	81	13	66	26	26	15	31	1.96
503701--503828	43	3.0	43	90	2	186	23	19	21	35	1.95
503719--503828	19	5.0	24	63	23	71	22	18	21	37	1.94
503995--504164	43	4.2	42	70	18	135	25	18	22	32	1.97
504242--504312	19	3.7	19	73	14	74	26	28	16	28	1.97
504239--504369	38	3.3	38	79	14	156	29	24	19	27	1.98
503995--504564	286	2.0	290	90	4	920	26	20	20	32	1.97
504279--504472	43	4.8	42	72	15	158	25	20	20	34	1.97
504241--504428	76	2.4	78	87	6	265	26	22	20	30	1.98
504553--504705	43	3.8	42	68	19	128	26	17	22	33	1.96
504860--505017	28	5.6	28	97	1	291	25	11	25	37	1.89
505179--505263	24	3.8	24	80	15	117	30	24	17	27	1.97
505203--505277	19	3.7	19	78	16	87	26	26	16	30	1.96
505179--505317	43	3.2	43	88	2	181	27	24	18	29	1.98
505203--505393	76	2.4	78	84	8	233	26	21	19	31	1.98
505341--505437	43	2.3	41	87	3	131	23	16	20	39	1.92
505501--505670	43	4.2	42	70	18	135	25	18	22	32	1.97
505620--505755	64	2.1	64	89	2	202	29	16	20	33	1.94
505781--505826	16	2.7	16	83	10	56	19	32	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505838--506020	28	6.6	28	85	10	234	27	10	25	36	1.89
506090--506171	43	1.9	43	89	0	128	24	14	24	36	1.93
506192--506222	16	1.9	16	100	0	62	19	32	16	32	1.94
506165--506308	76	1.9	76	100	0	288	22	27	13	36	1.92
506268--506298	16	1.9	16	100	0	62	19	32	16	32	1.94
506438--506519	20	3.7	20	74	22	83	34	12	24	29	1.91
506458--506602	28	5.5	28	71	24	129	29	11	24	34	1.91
506410--506521	48	2.3	48	95	0	197	32	11	24	32	1.91
506634--506726	19	4.6	19	79	12	114	29	25	17	27	1.97
506628--506800	43	3.9	43	74	11	168	28	25	16	30	1.96
506628--506694	24	3.0	24	83	14	90	32	22	17	26	1.96
506767--507259	43	11.8	42	69	17	219	26	20	19	32	1.97
506760--506916	76	2.0	78	87	6	228	27	19	21	31	1.98
507001--507085	24	3.8	24	80	15	117	30	24	17	27	1.97
507025--507099	19	3.7	19	78	16	87	26	26	16	30	1.96
507025--507215	76	2.4	79	86	8	244	26	21	20	30	1.98
507323--507492	43	4.2	42	68	18	126	25	18	22	32	1.97
507555--507585	16	1.9	16	93	0	53	19	29	16	35	1.93
507704--507817	43	2.7	43	95	0	201	25	16	22	35	1.95
507733--507803	19	3.5	19	71	17	61	26	19	22	30	1.98
515151--515217	28	2.4	28	100	0	134	26	11	23	37	1.90
515201--515380	99	1.9	98	85	4	258	27	22	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515363--515818	43	10.7	43	72	14	223	25	19	20	33	1.97
515392--515462	19	3.5	19	68	17	52	26	19	22	30	1.98
515367--515443	24	3.4	24	65	17	65	22	19	23	35	1.96
515624--515704	24	3.6	24	79	16	109	25	28	16	29	1.96
515608--515722	19	5.7	19	74	21	92	25	27	16	30	1.97
515734--515804	19	3.5	19	70	17	61	26	19	23	29	1.98
515752--515818	19	3.0	24	66	20	72	23	17	22	35	1.95
515349--516664	286	4.9	263	75	16	930	26	20	20	32	1.97
515862--515950	24	3.9	24	78	14	116	30	25	16	26	1.97
515890--515964	19	3.7	19	77	16	78	25	26	16	32	1.96
515865--515964	43	2.3	43	92	0	164	27	26	17	30	1.97
515950--516102	43	3.8	43	67	19	121	26	16	23	33	1.95
515922--516080	76	2.0	78	90	6	250	27	20	22	30	1.98
516180--516250	19	3.7	19	73	14	74	26	28	16	28	1.97
516177--516307	38	3.3	38	79	14	156	29	24	19	27	1.98
515890--516502	286	2.1	290	91	5	979	26	20	20	32	1.97
516217--516410	43	4.8	42	72	15	149	25	20	20	34	1.96
516179--516366	76	2.4	78	88	6	265	26	22	20	30	1.98
516491--516634	43	3.6	43	67	21	130	25	17	22	34	1.96
516668--516724	19	2.9	19	78	5	69	24	28	10	36	1.88
527203--527303	28	3.6	28	93	5	177	25	11	25	36	1.90
527287--527466	95	1.9	98	84	6	251	27	22	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527449--527647	43	4.9	43	75	14	213	26	17	23	32	1.96
527478--527548	19	3.5	19	68	17	52	26	19	22	30	1.98
527453--527529	24	3.4	24	65	17	65	22	19	23	35	1.96
527694--527766	19	3.7	19	74	20	62	23	28	16	31	1.96
527829--527956	43	3.0	43	93	2	204	23	19	21	35	1.95
527847--527956	19	5.0	24	66	20	87	22	18	21	37	1.94
528140--528292	43	3.8	42	68	19	119	26	16	22	33	1.96
528067--528570	248	2.0	251	86	6	707	26	19	21	32	1.97
528370--528445	19	3.7	19	79	16	89	26	27	15	30	1.96
528367--528431	24	2.9	24	80	15	86	30	26	15	27	1.96
528432--528541	19	5.0	24	66	20	87	22	18	21	37	1.94
528369--528550	43	4.2	43	87	2	217	25	20	20	33	1.97
528660--528690	16	1.9	16	93	0	53	16	29	12	41	1.85
528677--528757	24	3.6	24	79	16	109	25	28	16	29	1.96
528677--528775	19	4.6	23	77	17	106	26	27	16	30	1.96
528661--528775	43	2.7	43	94	4	200	25	27	15	31	1.96
528715--528871	43	3.7	43	87	3	210	26	19	21	32	1.97
528787--528857	19	3.5	19	70	17	61	26	19	23	29	1.98
529055--529207	43	3.8	42	68	19	119	26	16	22	33	1.96
529285--529355	19	3.7	19	73	14	74	26	28	16	28	1.97
529463--529582	28	4.3	29	94	5	212	25	10	25	38	1.88
529652--529735	43	2.0	43	87	0	123	22	15	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529754--529784	16	1.9	16	100	0	62	19	32	16	32	1.94
529829--529879	19	2.5	21	90	6	79	21	31	17	29	1.96
530032--530096	22	3.1	22	71	13	73	30	12	26	30	1.92
530243--530302	19	3.2	19	67	9	59	30	15	25	30	1.95
530105--530477	43	9.2	43	70	15	197	31	19	20	28	1.97
530403--530477	19	3.7	19	78	16	87	30	16	28	25	1.96
530127--530445	81	4.0	80	82	4	407	30	19	20	29	1.97
530421--530505	24	3.8	24	78	15	117	28	16	28	27	1.97
530243--530502	43	6.3	42	76	13	247	29	17	23	29	1.97
530563--530633	19	3.5	19	70	17	61	29	23	19	26	1.98
530549--531018	43	11.0	43	72	14	228	33	20	20	25	1.97
530645--530743	19	4.5	24	77	17	110	30	16	27	26	1.96
530730--530760	16	1.9	16	93	0	53	41	12	29	16	1.85
530924--531000	24	3.4	24	67	17	65	36	22	20	20	1.95
531172--531203	16	2.0	16	93	0	55	40	12	28	18	1.87
531249--531669	43	10.2	42	71	11	255	32	20	19	26	1.97
531268--531507	81	2.9	82	84	7	279	33	20	20	26	1.97
531392--531456	19	3.2	19	76	19	76	32	13	24	29	1.94
531478--531671	76	2.4	81	84	10	247	30	20	22	26	1.98
531595--531670	19	3.7	19	79	16	89	30	15	27	26	1.96
531609--531785	24	7.8	23	69	22	124	28	16	25	28	1.97
531330--531785	43	10.7	43	74	13	322	30	19	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531712--531786	19	3.7	19	75	15	78	28	18	25	28	1.98
531852--531933	20	3.7	20	74	22	83	29	24	12	34	1.91
531872--531950	28	3.1	27	69	27	82	34	24	12	29	1.92
531836--531950	48	2.4	48	94	2	205	33	25	11	29	1.91
533036--533121	30	3.0	29	88	5	129	18	31	29	20	1.97
539298--539328	16	1.9	16	100	0	62	32	16	32	19	1.94
539347--539444	43	2.3	42	83	3	124	40	21	16	21	1.91
539500--539619	28	4.3	28	95	4	208	38	25	10	25	1.88
545403--545433	16	1.9	16	100	0	62	32	16	32	19	1.94
545452--545549	43	2.3	42	83	3	124	40	21	16	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20