Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 15 of 20
Found at i:452424 original size:81 final size:79
Alignment explanation
Indices: 452215--452615 Score: 277
Period size: 81 Copynumber: 4.9 Consensus size: 79
452205 TTTTGAAAGA
* * * * *
452215 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTCAAA-GTC
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T-AAAGGTCAAGACTGT-CTTGAAAGGTC
*
452279 AGGACTGACCTTATCAAAAAGG
63 AGGACTGA--TTTTC---AAGG
* * ** * *
452301 TCAATACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGT
1 TCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT--C-TAAAGGTCAAGACTGTCTTGAAAGGT
*
452364 CAGGACTGATTCTTC-TGG
62 CAGGACTGATT-TTCAAGG
*
452382 TCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--TCA
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T-AAAGGTCAAGACTGTCTTGAAAGGTCA
* * *
452445 GTACTGACCTTTTTTGAAAGA
64 GGACTGA----TTTT-CAAGG
* * * **
452466 TCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT---GGTCAAGACTGTATTTCAAGGTCAGG
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAAAGGTCAAGACTGTCTTGAAAGGTCAGG
**
452528 ACTGACCTTACCAAAAAGG
66 ACTGA--TTTTC---AAGG
452547 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT---GGTCAAGACTGTCTTGAAAGGTCAGG
1 TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAAAGGTCAAGACTGTCTTGAAAGGTCAGG
452609 ACTGATT
66 ACTGATT
452616 ATGGAAGGAC
Statistics
Matches: 254, Mismatches: 42, Indels: 45
0.74 0.12 0.13
Matches are distributed among these distances:
79 29 0.11
80 6 0.02
81 116 0.46
82 5 0.02
83 3 0.01
84 35 0.14
85 11 0.04
86 43 0.17
87 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (79 bp):
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTCAAGG
Left flanking sequence: Indices 451715 -- 452214
AGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAG
GACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTT
GAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGG
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGA
Right flanking sequence: Indices 452616 -- 453115
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:452509 original size:122 final size:121
Alignment explanation
Indices: 452190--452563 Score: 419
Period size: 122 Copynumber: 3.0 Consensus size: 121
452180 TTTGTATGTC
*
452190 ATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAA
1 ATCAGTACTAACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T---
* * * *
452255 AGGTCAATACTGTATTTCAAA-GTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAA
62 -GGTCAAGACTGTA-TTCAAAGGTCAGGACTGA-CTTTTCAAAAAGGTCAAGACTGTC-TTGAA
* ***** * * * *
452318 AGTCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGT
1 A-TCAGTACTAACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGT
* * * **
452383 CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
65 CAAGACTGTATTCAAAGGTCAGGACTGACTTTTC-AAAAAGGTCAAGACTGTCTTGAA
*
452441 ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
1 ATCAGTACTAACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
**
452506 AAGACTGTATTTC-AAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
66 AAGACTGTA-TTCAAAGGTCAGGACTGA-CTTTTCAAAAAGGTCAAGACTGTCTTGAA
452563 A
1 A
452564 GGTCAGGACT
Statistics
Matches: 203, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
122 97 0.48
123 19 0.09
124 37 0.18
128 2 0.01
129 48 0.24
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (121 bp):
ATCAGTACTAACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTCAAAGGTCAGGACTGACTTTTCAAAAAGGTCAAGACTGTCTTGAA
Left flanking sequence: Indices 451690 -- 452189
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTC
Right flanking sequence: Indices 452564 -- 453063
GGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
Found at i:452753 original size:43 final size:42
Alignment explanation
Indices: 452690--452859 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
452680 TTGTATGTCA
* * * *
452690 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
452733 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
452771 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
*
452809 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
452852 TCAGGACT
1 TCAGGACT
452860 TTTGATGGAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 20 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 51 0.52
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 452190 -- 452689
ATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAA
AGGTCAATACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAATACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 452860 -- 453359
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
Found at i:453067 original size:19 final size:19
Alignment explanation
Indices: 453040--453110 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
453030 TATCAAAAAG
453040 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
453059 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
453082 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
453102 GTCAGGACT
1 GTCAAGACT
453111 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 452540 -- 453039
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 453111 -- 453610
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
Found at i:453092 original size:113 final size:116
Alignment explanation
Indices: 452847--453092 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
452837 GACTGTCTTG
*
452847 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
452911 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
452966 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
453030 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
453079 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
453093 TCTTTCACAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 452347 -- 452846
ATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 453093 -- 453592
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
Found at i:453146 original size:19 final size:19
Alignment explanation
Indices: 453122--453193 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 19
453112 ACCTTACCAA
453122 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
453141 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
453165 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
453181 AAAGGTCAGGACT
1 AAAGGTCAAGACT
453194 AATGAGAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
16 12 0.27
17 1 0.02
19 13 0.30
20 2 0.05
21 2 0.05
22 1 0.02
23 1 0.02
24 12 0.27
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 452622 -- 453121
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 453194 -- 453693
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTA
Found at i:453149 original size:43 final size:43
Alignment explanation
Indices: 453026--453622 Score: 238
Period size: 43 Copynumber: 14.0 Consensus size: 43
453016 ATTAGTACTC
* * * *
453026 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTA
* * *
453069 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTA
453112 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A
** ***
453156 TTCTT-CTGGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
* ** * * * * * * *
453195 A--TGAGAATGATTGAGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTC
1 ACCTTACCA--A---A--AA-G---GTCAAGACT-GTCTTGAAAG--GTCAGGACTA
* *
453249 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTA
* * *
453292 ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A
** * * * * *
453336 TTCTT--C----TGGTCAAGACTGTATTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTA
*
453373 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
** * *** * *
453416 ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
***** * * *
453457 ACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A
** * * * ** *
453501 TTCTT--C----TGGTCAATACTGTATTTCAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
453538 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A
** ***
453582 TTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
453623 CATTCTTCTT
Statistics
Matches: 418, Mismatches: 92, Indels: 88
0.70 0.15 0.15
Matches are distributed among these distances:
37 7 0.02
38 40 0.10
39 7 0.02
40 15 0.04
41 37 0.09
42 14 0.03
43 241 0.58
44 15 0.04
45 10 0.02
46 4 0.01
48 1 0.00
49 9 0.02
51 1 0.00
52 5 0.01
54 9 0.02
56 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTA
Left flanking sequence: Indices 452526 -- 453025
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 453623 -- 454122
CATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAA
AAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
Found at i:453401 original size:81 final size:80
Alignment explanation
Indices: 453262--453588 Score: 404
Period size: 81 Copynumber: 4.0 Consensus size: 80
453252 TTATCAAAAA
* *
453262 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTC-AAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
453327 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
* * *
453343 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCA-AGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
*
453408 CAGGACTGATTTTTCTT
65 CAGGACTGATTCTTC-T
* * * * *****
453425 GAAAGGTCAAGACTGT-CTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAA
1 ----GGTCAAGACTGTATTTCAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
453489 GATCAGGACTGATTCTTCT
62 GATCAGGACTGATTCTTCT
* * * *
453508 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAA-GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
453573 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
453589 TGAAAGGTCA
Statistics
Matches: 206, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
79 11 0.05
80 5 0.02
81 123 0.60
82 1 0.00
83 1 0.00
84 50 0.24
85 3 0.01
86 12 0.06
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (80 bp):
GGTCAAGACTGTATTTCAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCT
Left flanking sequence: Indices 452762 -- 453261
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 453589 -- 454088
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGA
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGG
TCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCA
GGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
TGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAATAC
Found at i:453407 original size:19 final size:19
Alignment explanation
Indices: 453383--453665 Score: 97
Period size: 19 Copynumber: 13.7 Consensus size: 19
453373 ACCTTACCAA
453383 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
453402 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
453426 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
453445 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
453467 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
453486 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * * *
453506 -CTGGTCAATACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
453524 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
453548 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
453567 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
453591 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
453610 AAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGA--C--T-GTCTTG
* * *
453634 AAAGGTCAGGACTCTTTTG
1 AAAGGTCAAGACTGTCTTG
453653 AAAGGTCAAGACT
1 AAAGGTCAAGACT
453666 CATTTGTATG
Statistics
Matches: 201, Mismatches: 32, Indels: 62
0.68 0.11 0.21
Matches are distributed among these distances:
17 6 0.03
19 101 0.50
20 5 0.02
21 7 0.03
22 11 0.05
23 4 0.02
24 67 0.33
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 452883 -- 453382
TGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 453666 -- 454165
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAA
GGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAA
Found at i:453534 original size:165 final size:165
Alignment explanation
Indices: 453302--453612 Score: 588
Period size: 165 Copynumber: 1.9 Consensus size: 165
453292 ACCTTACCAA
453302 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
1 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
*
453367 GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGT
66 GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
453432 CAAGACTGTCTTGAAATCAGTACTGACCTTTTTTG
131 CAAGACTGTCTTGAAATCAGTACTGACCTTTTTTG
*
453467 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA-AGGTC
1 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTC
453531 AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
65 AGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
453596 TCAAGACTGTCTTGAAA
130 TCAAGACTGTCTTGAAA
453613 GGTCAGGACT
Statistics
Matches: 143, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
164 1 0.01
165 142 0.99
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (165 bp):
AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTTTTTG
Left flanking sequence: Indices 452802 -- 453301
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 453613 -- 454112
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGG
ACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGAC
CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGA
CCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATT
Found at i:453591 original size:24 final size:24
Alignment explanation
Indices: 453562--453646 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
453552 GTCAAGACTG
453562 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
453586 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
453605 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
453629 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
453647 CTTTTGAAAG
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 453062 -- 453561
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 453647 -- 454146
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:453628 original size:43 final size:43
Alignment explanation
Indices: 453259--453665 Score: 312
Period size: 43 Copynumber: 9.7 Consensus size: 43
453249 ACCTTATCAA
* ** ***
453259 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
* * *
453302 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * ***
453343 ---GGTCAAGACTGTATTTCACA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTG
*
453383 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
453426 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTG
* * *
453467 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * ** * ***
453508 ---GGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
453548 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
453591 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * *
453634 AAAGGTCAGGACTCTTTTGAAAGGTCAAGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
453666 CATTTGTATG
Statistics
Matches: 291, Mismatches: 49, Indels: 48
0.75 0.13 0.12
Matches are distributed among these distances:
37 6 0.02
38 46 0.16
39 4 0.01
41 34 0.12
42 14 0.05
43 178 0.61
44 9 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 452759 -- 453258
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 453666 -- 454165
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATG
GAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAA
GACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAA
GGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAA
Found at i:453647 original size:24 final size:24
Alignment explanation
Indices: 453562--453669 Score: 110
Period size: 24 Copynumber: 4.9 Consensus size: 24
453552 GTCAAGACTG
*
453562 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
* *
453586 TCTTGAAAGGTCAAGA--C--T-G
1 TCTTGAAAGGTCAGGACTCATTCT
453605 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
453629 TCTTGAAAGGTCAGGA--C--TCT
1 TCTTGAAAGGTCAGGACTCATTCT
*
453649 T-TTGAAAGGTCAAGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
453670 TGTATGTCAT
Statistics
Matches: 69, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
19 28 0.41
20 5 0.07
21 2 0.03
22 1 0.01
23 2 0.03
24 31 0.45
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 453062 -- 453561
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGA
CTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAG
TACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 453670 -- 454169
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTC
AGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTC
Found at i:453744 original size:43 final size:43
Alignment explanation
Indices: 453679--453839 Score: 129
Period size: 43 Copynumber: 3.9 Consensus size: 43
453669 TTGTATGTCA
* * *
453679 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * * *
453722 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
** * * *
453764 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* *
453803 TCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
453840 GAAAGGTCAG
Statistics
Matches: 88, Mismatches: 21, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
37 3 0.03
38 17 0.19
39 6 0.07
42 6 0.07
43 52 0.59
44 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 453179 -- 453678
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 453840 -- 454339
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAA
AGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCA
AACGAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGT
Found at i:453799 original size:81 final size:81
Alignment explanation
Indices: 453701--454119 Score: 277
Period size: 81 Copynumber: 5.0 Consensus size: 81
453691 TTATCAAAAA
* *
453701 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
453766 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * *
453782 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
* * ***
453847 CAGGACT-TTTGATGGAA
66 CAGGACTGATT-CT-TCT
* * * * * * *
453864 GGACAGGACCAATTGCAATTGT-ATGCCA-TTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
1 GGTCAAGA-C---TG-TATT-TCA---CAGTCAGGACTAACCTTACCAAAAA--G--A--TCAAG
* * *
453927 ACTGTCTTG-AA-ATCAGTACTGACCTT-ATCAAAAA
51 ACTGTCTTGAAAGATCAGGACTGA--TTCTTC----T
* * *
453961 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T----GAT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
454021 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * *
454037 GGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGA
454101 TCAGGACTGATTCTTCT
65 TCAGGACTGATTCTTCT
454118 GG
1 GG
454120 AAAGGTCAAG
Statistics
Matches: 257, Mismatches: 47, Indels: 68
0.69 0.13 0.18
Matches are distributed among these distances:
75 1 0.00
76 49 0.19
77 1 0.00
79 2 0.01
80 4 0.02
81 96 0.37
82 5 0.02
83 2 0.01
84 10 0.04
86 3 0.01
87 4 0.02
88 2 0.01
89 19 0.07
90 20 0.08
91 2 0.01
92 3 0.01
93 9 0.04
94 2 0.01
95 13 0.05
96 3 0.01
97 7 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 453201 -- 453700
ATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 454120 -- 454619
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCATTGCAAT
TCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACGAATGCCATTAGTACTT
TCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCAT
CCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTG
ATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGG
AAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGA
CTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTC
Found at i:454085 original size:43 final size:43
Alignment explanation
Indices: 453917--454151 Score: 165
Period size: 43 Copynumber: 5.7 Consensus size: 43
453907 CCAAAAATGG
* * * *
453917 AAAGGTCAAGACTGTC-TTGAA-ATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
* *
453958 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
* * * *
454001 AAAGATCAAGACTATC--T---GATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAA
* *
454036 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
* ** * ***
454077 AAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAA
**
454120 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAGGTCAGGACT
454152 CATTCTTCTG
Statistics
Matches: 152, Mismatches: 27, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 4 0.03
38 20 0.13
39 4 0.03
41 17 0.11
42 4 0.03
43 89 0.59
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 453417 -- 453916
TTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTAT
CTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCA
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 454152 -- 454651
CATTCTTCTGGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTGCAAACGAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTT
TTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTG
GAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACT
GTTTTGAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCATTTGT
Found at i:454101 original size:19 final size:19
Alignment explanation
Indices: 454077--454151 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
454067 ACCTTACCAA
*
454077 AAAGGTCAATACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
454096 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
454120 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
454139 AAAGGTCAGGACT
1 AAAGGTCAAGACT
454152 CATTCTTCTG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 25 0.53
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.30
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 453577 -- 454076
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 454152 -- 454651
CATTCTTCTGGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTGCAAACGAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACA
AATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTT
TTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTG
GAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACT
GTTTTGAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCATTTGT
Found at i:454122 original size:24 final size:24
Alignment explanation
Indices: 454095--454175 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
454085 ATACTGTCTT
454095 GAAAGGTCAGGACTGATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
*
454119 GAAAGGTCAAGACTG--TC-T-T-
1 GAAAGGTCAGGACTGATTCTTCTG
*
454138 GAAAGGTCAGGACTCATTCTTCTG
1 GAAAGGTCAGGACTGATTCTTCTG
454162 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
454176 CATTGCAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 13 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 28 0.57
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTG
Left flanking sequence: Indices 453595 -- 454094
GTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTT
Right flanking sequence: Indices 454176 -- 454675
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACGAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACC
AAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAA
TGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGA
ATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTGTCTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
Found at i:454157 original size:43 final size:43
Alignment explanation
Indices: 454077--454175 Score: 171
Period size: 43 Copynumber: 2.3 Consensus size: 43
454067 ACCTTACCAA
* *
454077 AAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
454120 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
*
454163 AAAGGTCAGGACT
1 AAAGGTCAAGACT
454176 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
Left flanking sequence: Indices 453577 -- 454076
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 454176 -- 454675
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACGAATGCCA
TTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACC
AAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAA
TGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGA
ATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAC
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTGTCTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
Found at i:454219 original size:28 final size:28
Alignment explanation
Indices: 454187--454313 Score: 229
Period size: 28 Copynumber: 4.5 Consensus size: 28
454177 ATTGCAATTC
454187 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
454215 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
454243 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
*
454271 AATGCCATTAGTACTCACTGTG-CAAACG
1 AATGCCATTAGTACTCACT-TGACAAACA
454299 AATGCCATTAGTACT
1 AATGCCATTAGTACT
454314 TTCCATATGC
Statistics
Matches: 97, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
28 95 0.98
29 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 453687 -- 454186
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 454314 -- 454813
TTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCA
TCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATT
GATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATG
GAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGG
ACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTGTCTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCAAT
GCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACAT
Found at i:454257 original size:56 final size:56
Alignment explanation
Indices: 454187--454350 Score: 229
Period size: 56 Copynumber: 3.1 Consensus size: 56
454177 ATTGCAATTC
454187 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTG-CAAACA
*
454243 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACG
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
* *
454299 AATGCCATTAGTACT---TT--C---CATATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
454347 AATG
1 AATG
454351 TCATGAGTGC
Statistics
Matches: 103, Mismatches: 4, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
48 31 0.30
51 1 0.01
53 2 0.02
56 67 0.65
57 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (56 bp):
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTGCAAACA
Left flanking sequence: Indices 453687 -- 454186
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAATACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 454351 -- 454850
TCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTT
TGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAG
CACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCAT
CAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTT
TGAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AACAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCAT
ACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATA
Found at i:454368 original size:48 final size:48
Alignment explanation
Indices: 454272--454368 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
454262 TGACAAACAA
* * * **
454272 ATGCCATTAGTACTCACTGTGCAAACGAATGCCATTAGTACTTTCCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
* *
454320 ATGCCATTAGTACTCACTGTACAAACAAATGTCATGAGTGCTGACCAT
1 ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
454368 A
1 A
454369 CCAAAATCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (48 bp):
ATGCCATTAGTACTCACTGTACAAACAAATGCCATGAGTACTGACCAT
Left flanking sequence: Indices 453772 -- 454271
TGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAATACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAATACTGTCTTGA
AAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTG
GAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
Right flanking sequence: Indices 454369 -- 454868
CCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGATGGATAATGGCATAC
AATGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCT
GAATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
ACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTGTC
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATT
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCAC
TATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTC
Found at i:454623 original size:19 final size:19
Alignment explanation
Indices: 454595--454644 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
454585 AAAAGTCAGG
* *
454595 AAGGTGAGGACTGTTTTGA
1 AAGGTCAGGACTGTCTTGA
454614 AAGGTCAGGACTGTCTTGA
1 AAGGTCAGGACTGTCTTGA
*
454633 AAGGTCAAGACT
1 AAGGTCAGGACT
454645 CATTTGTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (19 bp):
AAGGTCAGGACTGTCTTGA
Left flanking sequence: Indices 454095 -- 454594
GAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTC
TGGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
GTGCAAACGAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACAAATGTCAT
GAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGGATAATGGCATCTCCTTTTTTTGAT
GGATAATGGCATACAATGACAATTGATCCTTTCCATCATTTCCTTTCCATGAAGTTGGAAGCACT
TTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGT
ACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 454645 -- 455144
CATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTCAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGC
CATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAACAAATTTTGATGGATTTTGGTA
TGGTCAGCACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATAAGGTCACTGATTCAGG
TCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAAC
CAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATG
GAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCAT
Found at i:454812 original size:28 final size:28
Alignment explanation
Indices: 454701--454802 Score: 179
Period size: 28 Copynumber: 3.6 Consensus size: 28
454691 ATTGCAATTC
454701 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
454729 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
454757 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
454785 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
454803 CATACCAACA
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
27 2 0.03
28 70 0.97
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 454201 -- 454700
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTGTGCAAACGAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTGTACAAACAAATGTCATGAGTGCTGACCATACCAAAATCCATCCAAATTGGTTGATGG
ATAATGGCATCTCCTTTTTTTGATGGATAATGGCATACAATGACAATTGATCCTTTCCATCATTT
CCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGACTCATTATGGAAAAGT
CAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGT
CATCAGTACTCACCATACCAAACAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 454803 -- 455302
CATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATT
CATGCTGACCATCAACAAATTTTGATGGATTTTGGTATGGTCAGCACTAATGACATACAATTCTC
ATTAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCA
TATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAA
TGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACA
GTGAGTACTAATGGCATACGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGCAA
TGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
Found at i:455091 original size:28 final size:27
Alignment explanation
Indices: 455059--455144 Score: 87
Period size: 28 Copynumber: 3.4 Consensus size: 27
455049 TTTGGTATGG
*
455059 CTAATGACATTTGTTTGTACAGTGAGTA
1 CTAATGGCATTTGTTTG-ACAGTGAGTA
*
455087 CTAATGGCATATG---GA-A---AGTA
1 CTAATGGCATTTGTTTGACAGTGAGTA
455107 CTAATGGCATTTGTTTGCACAGTGAGTA
1 CTAATGGCATTTGTTTG-ACAGTGAGTA
455135 CTAATGGCAT
1 CTAATGGCAT
455145 ACGCATACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 16
0.71 0.05 0.24
Matches are distributed among these distances:
20 16 0.34
23 2 0.04
24 2 0.04
25 2 0.04
28 25 0.53
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
CTAATGGCATTTGTTTGACAGTGAGTA
Left flanking sequence: Indices 454559 -- 455058
ACCAAACAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTTTTGAAAGGTCAGGA
CTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAACAGGTCAGGAC
TCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAAC
AAATTTTGATGGATTTTGGTATGGTCAGCACTAATGACATACAATTCTCATTAGTCCTGACCTTT
CCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAAT
GAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGG
Right flanking sequence: Indices 455145 -- 455644
ACGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTG
Found at i:455219 original size:24 final size:24
Alignment explanation
Indices: 455191--455236 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
455181 ATACAATTGC
455191 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
455215 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
455237 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 454691 -- 455190
ATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACT
CACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAACAA
ATTTTGATGGATTTTGGTATGGTCAGCACTAATGACATACAATTCTCATTAGTCCTGACCTTTCC
ATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGA
GATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATA
CGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGC
Right flanking sequence: Indices 455237 -- 455736
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATA
ATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAG
ACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Found at i:455378 original size:43 final size:42
Alignment explanation
Indices: 455331--455483 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
455321 ACCTTTCAAG
455331 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
455374 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
455409 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
455450 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
455484 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 454831 -- 455330
AACAGATGCCATTTTCCATACCAAGAAAGATGCCATTCATGCTGACCATCAACAAATTTTGATGG
ATTTTGGTATGGTCAGCACTAATGACATACAATTCTCATTAGTCCTGACCTTTCCATAAGGTCAC
TGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTA
TCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAA
TGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATACGCATACAAT
TTTGGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 455484 -- 455983
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCC
TGACTTTTCCATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAGTC
TTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTGGTAT
GGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTG
ACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTC
AGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCTG
ACAAAAAGCTTCAAAAGAAGGCTTTGCTGACTTTGCTCTGGCCTTATCTGACTTATCTGACCTTC
AGAAGCTTCAACAATTCCATTTTCCTTCAAGATCAGATTGAAAGG
Found at i:455521 original size:19 final size:19
Alignment explanation
Indices: 455497--455546 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
455487 CATACAAATG
*
455497 AGTCTTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAAAC
*
455516 AGTCTTGACCTTTCAAAAG
1 AGTCTTGACCTTTCAAAAC
*
455535 AGTCCTGACCTT
1 AGTCTTGACCTT
455547 CCTGACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAAAC
Left flanking sequence: Indices 454997 -- 455496
ATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTA
ATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCAC
AGTGAGTACTAATGGCATACGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGCA
ATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTT
TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 455547 -- 456046
CCTGACTTTTCCATAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTGGT
ATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCC
TGACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGG
TCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTC
TGACAAAAAGCTTCAAAAGAAGGCTTTGCTGACTTTGCTCTGGCCTTATCTGACTTATCTGACCT
TCAGAAGCTTCAACAATTCCATTTTCCTTCAAGATCAGATTGAAAGGAGTGCTTTCTGAAAGAAG
AGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGA
Found at i:455613 original size:45 final size:45
Alignment explanation
Indices: 455561--455707 Score: 118
Period size: 45 Copynumber: 3.2 Consensus size: 45
455551 ACTTTTCCAT
455561 AATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACA
1 AATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACA
* *** ** ** ** * *
455606 AATGAGTCTTGACCTTTCAAG-ACAGT-CCTCACCTTCCTGACTTTTCCA
1 AATGAGTCCTGACCTTTTTGGTATGGTGAGT-A-C-TGATGAC--ATACA
455654 TAATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACA
1 -AATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACA
455700 AATGAGTC
1 AATGAGTC
455708 TTGATGGTCA
Statistics
Matches: 70, Mismatches: 24, Indels: 16
0.64 0.22 0.15
Matches are distributed among these distances:
43 1 0.01
44 4 0.06
45 26 0.37
46 8 0.11
48 8 0.11
49 18 0.26
50 4 0.06
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (45 bp):
AATGAGTCCTGACCTTTTTGGTATGGTGAGTACTGATGACATACA
Left flanking sequence: Indices 455061 -- 455560
AATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCA
CAGTGAGTACTAATGGCATACGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGC
AATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAC
AGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCAT
Right flanking sequence: Indices 455708 -- 456207
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAG
AAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATAC
CAAAATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTTCAAAAGAAGGCTTTGCTG
ACTTTGCTCTGGCCTTATCTGACTTATCTGACCTTCAGAAGCTTCAACAATTCCATTTTCCTTCA
AGATCAGATTGAAAGGAGTGCTTTCTGAAAGAAGAGATCAAGGTTTGACGGATTGATGGAAAGGA
AATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATC
CATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATG
GCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTA
Found at i:455677 original size:94 final size:94
Alignment explanation
Indices: 455516--455711 Score: 365
Period size: 94 Copynumber: 2.1 Consensus size: 94
455506 CTTTCAAGAC
* *
455516 AGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTG
1 AGTCTTGACCTTTCAAAACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTG
455581 GTATGGTGAGTACTGATGACATACAAATG
66 GTATGGTGAGTACTGATGACATACAAATG
*
455610 AGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTG
1 AGTCTTGACCTTTCAAAACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTG
455675 GTATGGTGAGTACTGATGACATACAAATG
66 GTATGGTGAGTACTGATGACATACAAATG
455704 AGTCTTGA
1 AGTCTTGA
455712 TGGTCATTCC
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 99 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (94 bp):
AGTCTTGACCTTTCAAAACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTTTG
GTATGGTGAGTACTGATGACATACAAATG
Left flanking sequence: Indices 455016 -- 455515
GATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATA
CGCATACAATTTTGGGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGA
TCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAC
Right flanking sequence: Indices 455712 -- 456211
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAAT
GAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAA
ATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTTCAAAAGAAGGCTTTGCTGACTT
TGCTCTGGCCTTATCTGACTTATCTGACCTTCAGAAGCTTCAACAATTCCATTTTCCTTCAAGAT
CAGATTGAAAGGAGTGCTTTCTGAAAGAAGAGATCAAGGTTTGACGGATTGATGGAAAGGAAATG
ATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATC
AACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCAT
ATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGG
Found at i:456364 original size:28 final size:28
Alignment explanation
Indices: 456173--456354 Score: 348
Period size: 28 Copynumber: 6.5 Consensus size: 28
456163 GCATATGGAA
456173 AGTACTAATGGCATTTGTTTG-CACAGTG
1 AGTACTAATGGCATTTGTTTGTCA-AGTG
456201 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
456229 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
456257 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
456285 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
456313 AGTACTAATGGCATTTGTTTGTCAAGTG
1 AGTACTAATGGCATTTGTTTGTCAAGTG
456341 AGTACTAATGGCAT
1 AGTACTAATGGCAT
456355 ACAATTGTCA
Statistics
Matches: 153, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
28 151 0.99
29 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.38
Consensus pattern (28 bp):
AGTACTAATGGCATTTGTTTGTCAAGTG
Left flanking sequence: Indices 455673 -- 456172
TGGTATGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAAAACAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATT
CAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTG
ACTCTGACAAAAAGCTTCAAAAGAAGGCTTTGCTGACTTTGCTCTGGCCTTATCTGACTTATCTG
ACCTTCAGAAGCTTCAACAATTCCATTTTCCTTCAAGATCAGATTGAAAGGAGTGCTTTCTGAAA
GAAGAGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGATCAATTGTCATTGTAT
GCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGATTTTGGTATG
GCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAA
Right flanking sequence: Indices 456355 -- 456854
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATG
Found at i:456472 original size:43 final size:43
Alignment explanation
Indices: 456424--456507 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
456414 CTGATCTTTC
* * * *
456424 AAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTATTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
* *
456467 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTT
1 AAGACAGTATTGACCTTTTTGATAAGGTGAGTCCTGACTTT
456508 TCCTCAATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (43 bp):
AAGACAGTATTGACCTTTTTGATAAGGTGAGTCCTGACTTTGA
Left flanking sequence: Indices 455924 -- 456423
ACTTATCTGACCTTCAGAAGCTTCAACAATTCCATTTTCCTTCAAGATCAGATTGAAAGGAGTGC
TTTCTGAAAGAAGAGATCAAGGTTTGACGGATTGATGGAAAGGAAATGATGGAAAGGATCAATTG
TCATTGTATGCCATTATCCATCAAAAAAAGGAGATGCCATTATCCATCAACCAATTTGGATGGAT
TTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGG
CATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 456508 -- 457007
TCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTG
Found at i:456547 original size:16 final size:16
Alignment explanation
Indices: 456526--456556 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
456516 CATTCTCATT
456526 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
456542 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
456557 AGAAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 456026 -- 456525
GAAAGGAAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAAAAAGGAGATGC
CATTATCCATCAACCAATTTGGATGGATTTTGGTATGGCTAATGACATTTGTTTGTACAGTGAGT
ACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 456557 -- 457056
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
Found at i:456725 original size:43 final size:42
Alignment explanation
Indices: 456678--456830 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
456668 ACCTTTCAAG
456678 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
456721 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
456756 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
456797 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
456831 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 456178 -- 456677
TAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCT
GACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTATTTAT
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTG
ACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 456831 -- 457330
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
Found at i:456954 original size:24 final size:19
Alignment explanation
Indices: 456908--456983 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
456898 CTTCCATAAT
456908 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
456927 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
456950 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
456970 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
456984 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 456408 -- 456907
GAAGTTCTGATCTTTCAAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 456984 -- 457483
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTG
ATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTAC
TGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAG
Found at i:456957 original size:43 final size:44
Alignment explanation
Indices: 456905--457023 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 44
456895 GTCCTTCCAT
456905 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
***
456948 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
* ** *
456992 -GTCAGTCCTGACCTTGAAATACAGTCTTGACC
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC
457024 AGAAGAATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
Left flanking sequence: Indices 456405 -- 456904
GAAGAAGTTCTGATCTTTCAAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 457024 -- 457523
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
Found at i:457016 original size:291 final size:295
Alignment explanation
Indices: 456661--457238 Score: 954
Period size: 291 Copynumber: 2.0 Consensus size: 295
456651 TTCCATCAAA
*
456661 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
*
456726 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
* *
456791 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TTG
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT-
*
456851 TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCCT
195 TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCCT
456915 GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
259 GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
456952 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAG
457016 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
** ** *
457081 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
130 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCC
*
457146 ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
192 ATTTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
457211 CTGACCTTTCAAGACAGTCTTGACCTTT
257 CTGACCTTTCAAGACAGTCTTGACCTTT
457239 TTGGTAAGGT
Statistics
Matches: 266, Mismatches: 11, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
291 166 0.62
292 6 0.02
294 3 0.01
297 1 0.00
298 86 0.32
299 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (295 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
Left flanking sequence: Indices 456161 -- 456660
TGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATTTGTTTGTCAA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTATTTATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 457239 -- 457738
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Found at i:457075 original size:76 final size:78
Alignment explanation
Indices: 456941--457099 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 78
456931 CTTGACCTTT
456941 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CT
*
457006 -TGAAATACAGTCTTGA
62 GTGAAAGACAGTCTTGA
* * *
457022 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
457085 AAGACAGTCTTGA
66 AAGACAGTCTTGA
457098 CC
1 CC
457100 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
75 2 0.03
76 50 0.68
77 2 0.03
81 19 0.26
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 456441 -- 456940
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 457100 -- 457599
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTG
Found at i:457095 original size:43 final size:41
Alignment explanation
Indices: 457047--457143 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 41
457037 CTGATCAGAT
* * * *
457047 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TGAAAGAC
**
457090 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
457131 AGTCTTGACCTTT
1 AGTCTTGACCTTT
457144 CCATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 19 0.40
42 1 0.02
43 28 0.58
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
Left flanking sequence: Indices 456547 -- 457046
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 457144 -- 457643
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGT
GAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCAT
Found at i:457271 original size:43 final size:43
Alignment explanation
Indices: 457207--457376 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 43
457197 TTCCATCAAA
*
457207 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
457250 AGTCCTGACTTTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
457288 AGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
457326 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
457369 AGTACTGA
1 AGTCCTGA
457377 TGACATACAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 4 0.04
43 52 0.55
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 456707 -- 457206
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 457377 -- 457876
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
Found at i:457490 original size:19 final size:19
Alignment explanation
Indices: 457423--457532 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
457413 CATTCTCATT
457423 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
457439 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
457463 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
* **
457482 AGTCTTGACC--AGAAGAATC
1 AGTCCTGACCTTTCAAG-A-C
457501 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
457520 AGTCTTGACCTTT
1 AGTCCTGACCTTT
457533 TTGGTAAGGT
Statistics
Matches: 73, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
16 12 0.16
17 4 0.05
18 1 0.01
19 33 0.45
20 4 0.05
21 6 0.08
23 1 0.01
24 12 0.16
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 456923 -- 457422
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 457533 -- 458032
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAAT
Found at i:457503 original size:38 final size:38
Alignment explanation
Indices: 457452--457529 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
457442 CTTGACCTTT
457452 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
457490 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
1 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
457528 CC
1 CC
457530 TTTTTGGTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (38 bp):
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
Left flanking sequence: Indices 456952 -- 457451
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCA
TTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTT
Right flanking sequence: Indices 457530 -- 458029
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTC
CTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Found at i:457562 original size:43 final size:43
Alignment explanation
Indices: 457499--457628 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
457489 ACCAGAAGAA
* *
457499 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
*
457542 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
* *
457585 TCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
457628 T
1 T
457629 GAGTACTAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.05
43 76 0.95
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 456999 -- 457498
CTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCC
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
Right flanking sequence: Indices 457629 -- 458128
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTG
ACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGAT
Found at i:457571 original size:19 final size:19
Alignment explanation
Indices: 457544--457614 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
457534 TGGTAAGGTT
457544 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
457563 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
* *
457587 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
457606 AGTCTTGAC
1 AGTCCTGAC
457615 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 16 0.40
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 457044 -- 457543
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 457615 -- 458114
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAA
AAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATC
Found at i:457757 original size:24 final size:24
Alignment explanation
Indices: 457672--457760 Score: 116
Period size: 24 Copynumber: 3.9 Consensus size: 24
457662 GTCCTTCCAT
*
457672 AATCAGTCCTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
457696 AATGAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
457717 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
457739 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
457761 CAGTCTTGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
19 13 0.23
20 1 0.02
21 3 0.05
22 3 0.05
23 1 0.02
24 35 0.62
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 457172 -- 457671
CATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGAT
AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGAC
CTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 457761 -- 458260
CAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGAC
CTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
Found at i:457774 original size:19 final size:19
Alignment explanation
Indices: 457700--457774 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
457690 CAGAAGAATG
*
457700 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
457719 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC---AAG-A-C
*
457743 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
*
457762 AGTCTTGATCTTT
1 AGTCTTGACCTTT
457775 TTGGTAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 25 0.53
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.30
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 457200 -- 457699
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
ATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 457775 -- 458274
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
Found at i:457794 original size:43 final size:43
Alignment explanation
Indices: 457675--457774 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
457665 CTTCCATAAT
* * *
457675 CAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
457718 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
*
457761 CAGTCTTGATCTTT
1 CAGTCTTGACCTTT
457775 TTGGTAAGGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 457175 -- 457674
ACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTT
TCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 457775 -- 458274
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTA
TTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
Found at i:457807 original size:43 final size:42
Alignment explanation
Indices: 457741--457912 Score: 103
Period size: 43 Copynumber: 4.2 Consensus size: 42
457731 TCAAGAAGAA
** *
457741 TCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAATACAGTCTTGATCTTTTTGGTAAGG
* ** *
457784 TCAGTCCTGACTGTGAAATACAGTATTGA-C----CAG-AAGAA
1 TCAGTCCTGACT-TGAAATACAGTCTTGATCTTTTTGGTAAG-G
* *
457822 TCAGTCCTGA--TCAGAT--AGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAATACAGTCTTGATCTTTTTGGTAAGG
* * * *
457860 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAATACAGTCTTGATCTTTTTGGTAAGG
* *
457903 TGAGTACTGA
1 TCAGTCCTGA
457913 TGACATACAA
Statistics
Matches: 95, Mismatches: 21, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
33 7 0.07
34 1 0.01
35 4 0.04
37 3 0.03
38 21 0.22
39 3 0.03
41 3 0.03
42 3 0.03
43 50 0.53
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAATACAGTCTTGATCTTTTTGGTAAGG
Left flanking sequence: Indices 457241 -- 457740
GGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAG
TACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAG
AATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
Right flanking sequence: Indices 457913 -- 458412
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAA
TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTC
Found at i:457866 original size:76 final size:78
Alignment explanation
Indices: 457734--457890 Score: 228
Period size: 76 Copynumber: 2.0 Consensus size: 78
457724 TGACCTTTCA
457734 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTG
*
457799 AAATACAGTATTGACC
63 AAAGACAGTATTGACC
* * *
457815 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
*
457878 GACAGTCTTGACC
66 GACAGTATTGACC
457891 TTTTTGATAA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 52 0.73
77 2 0.03
81 17 0.24
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTATTGACC
Left flanking sequence: Indices 457234 -- 457733
CCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCA
Right flanking sequence: Indices 457891 -- 458390
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGAC
CTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAG
Found at i:458018 original size:19 final size:19
Alignment explanation
Indices: 457990--458068 Score: 95
Period size: 19 Copynumber: 3.9 Consensus size: 19
457980 CTTCCATAAT
457990 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
458009 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
458032 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
458052 CAGTCTTGACCTTTCAA
1 CAGTCCTGACCTTTCAA
458069 AAAAGGTCAG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 30 0.58
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.27
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 457490 -- 457989
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 458069 -- 458568
AAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
ACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
ACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
Found at i:458034 original size:291 final size:295
Alignment explanation
Indices: 457700--458320 Score: 986
Period size: 291 Copynumber: 2.1 Consensus size: 295
457690 CAGAAGAATG
457700 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
* ***** *
457765 CTTGATCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTATTGACCAGAAGAATCAGTCC
66 CTTGACCTTTCAAAAAAGGTCAGTCCTGACCT-TGAAATAAAGTATTGACCAGAAGAATCAGTCC
*
457829 TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
130 TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
* *
457894 TTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TTGTATGGTCAGGTGAGTACTAAT
195 TTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT-TATGGTCAGGTGAGTACTAAT
*
457954 GGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATC
259 GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-A
457991 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
458056 CTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCT
66 CTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCT
458121 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
131 GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
** ** * *
458186 TGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAA
196 TGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCCATTTATGGTCAGGTGAGTACTAA
458251 TGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
258 TGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
458289 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTT
458321 TTGGTAAGGT
Statistics
Matches: 303, Mismatches: 17, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
291 203 0.67
292 6 0.02
294 3 0.01
297 1 0.00
298 86 0.28
299 4 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (295 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTTATGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Left flanking sequence: Indices 457200 -- 457699
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
ATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGA
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAAT
TGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATG
Right flanking sequence: Indices 458321 -- 458820
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATA
CAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTT
Found at i:458036 original size:24 final size:24
Alignment explanation
Indices: 457987--458051 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
457977 GTCCTTCCAT
457987 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
458008 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
458030 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
458052 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 457487 -- 457986
TGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 458052 -- 458551
CAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACC
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTT
Found at i:458085 original size:24 final size:23
Alignment explanation
Indices: 457989--458088 Score: 74
Period size: 19 Copynumber: 4.6 Consensus size: 23
457979 CCTTCCATAA
457989 TCAGTCCTGACCTTTC----AAG
1 TCAGTCCTGACCTTTCAAAAAAG
* *
458008 ACAGTCTTGACCTTTCAAGAAGAA-
1 TCAGTCCTGACCTTTCAA-AA-AAG
458032 TCAGTCCTGACCTTTC----AAG
1 TCAGTCCTGACCTTTCAAAAAAG
* *
458051 ACAGTCTTGACCTTTCAAAAAAGG
1 TCAGTCCTGACCTTTCAAAAAA-G
458075 TCAGTCCTGACCTT
1 TCAGTCCTGACCTT
458089 GAAATAAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 19
0.69 0.09 0.22
Matches are distributed among these distances:
18 2 0.03
19 28 0.46
23 2 0.03
24 27 0.44
25 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (23 bp):
TCAGTCCTGACCTTTCAAAAAAG
Left flanking sequence: Indices 457489 -- 457988
ACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACT
TTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTT
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 458089 -- 458588
GAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTG
Found at i:458097 original size:24 final size:24
Alignment explanation
Indices: 458009--458088 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 24
457999 CCTTTCAAGA
*
458009 CAGTCTTGACCTTTCAAGAAGAA--T
1 CAGTCCTGACCTTTCAA-AA-AAGGT
*
458033 CAGTCCTGACCTTTC----AA-GA
1 CAGTCCTGACCTTTCAAAAAAGGT
*
458052 CAGTCTTGACCTTTCAAAAAAGGT
1 CAGTCCTGACCTTTCAAAAAAGGT
458076 CAGTCCTGACCTT
1 CAGTCCTGACCTT
458089 GAAATAAAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
18 2 0.04
19 14 0.31
23 2 0.04
24 27 0.60
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (24 bp):
CAGTCCTGACCTTTCAAAAAAGGT
Left flanking sequence: Indices 457509 -- 458008
CCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGAAGAATGAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 458089 -- 458588
GAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTG
Found at i:458105 original size:43 final size:43
Alignment explanation
Indices: 457987--458088 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
457977 GTCCTTCCAT
457987 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
458030 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAA-AA-
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
458071 AAGGTCAGTCCTGACCTT
1 AA--TCAGTCCTGACCTT
458089 GAAATAAAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
41 2 0.04
42 2 0.04
43 53 0.93
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 457487 -- 457986
TGACCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCT
TTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCT
GACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 458089 -- 458588
GAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTA
GTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCA
GTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAG
TCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTG
Found at i:458222 original size:41 final size:43
Alignment explanation
Indices: 458129--458225 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
458119 CTGATCAGAT
* * * *
458129 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGAC
**
458172 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGAC
458213 AGTCTTGACCTTT
1 AGTCTTGACCTTT
458226 CCATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 19 0.40
42 1 0.02
43 28 0.58
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (43 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTGTGAAAGAC
Left flanking sequence: Indices 457629 -- 458128
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCCAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTG
ACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 458226 -- 458725
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCA
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
Found at i:458353 original size:43 final size:43
Alignment explanation
Indices: 458289--458463 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
458279 TTCCATCAAA
* *
458289 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAATACAGTCTTGACCTTTTTGGTAAGGTC
* * * *
458332 AGTCCTGACTGTGAAATACAGTATTGACC-----AG-AAGAATC
1 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGGTAAG-GTC
* *
458370 AGTCCTGATCTTTCAAGAT--AGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAA-ATACAGTCTTGACCTTTTTGGTAAGGTC
* * *
458413 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGGTAAGGTC
*
458456 AGTACTGA
1 AGTCCTGA
458464 TGACATACAA
Statistics
Matches: 102, Mismatches: 18, Indels: 24
0.71 0.12 0.17
Matches are distributed among these distances:
37 3 0.03
38 19 0.19
39 5 0.05
40 2 0.02
41 1 0.01
42 9 0.09
43 60 0.59
44 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 457789 -- 458288
CCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 458464 -- 458963
TGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATT
CCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAA
TTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAG
Found at i:458428 original size:81 final size:81
Alignment explanation
Indices: 458289--458441 Score: 252
Period size: 81 Copynumber: 1.9 Consensus size: 81
458279 TTCCATCAAA
*
458289 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
458354 ATTGACCAGAAGAATC
66 ATTGACCAGAAGAATC
* * * *
458370 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
*
458435 CTTGACC
66 ATTGACC
458442 TTTTTGATAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (81 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGT
ATTGACCAGAAGAATC
Left flanking sequence: Indices 457789 -- 458288
CCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 458442 -- 458941
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCT
TTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACC
TTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
Found at i:458499 original size:19 final size:19
Alignment explanation
Indices: 458477--458551 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
458467 CATACAAATG
458477 AGTCTTGACCTTTCAAAAC
1 AGTCTTGACCTTTCAAAAC
*
458496 AGTCTTCACCTTTCAAGAAGAATC
1 AGTCTTGACCTTTC---AA-AA-C
* *
458520 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAAAC
*
458539 AGTCTTGATCTTT
1 AGTCTTGACCTTT
458552 TTGGTAAGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 25 0.56
20 1 0.02
21 2 0.04
22 2 0.04
23 2 0.04
24 13 0.29
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.33
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAAAC
Left flanking sequence: Indices 457977 -- 458476
GTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCA
GAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGA
ATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
Right flanking sequence: Indices 458552 -- 459051
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAG
TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
Found at i:458565 original size:43 final size:43
Alignment explanation
Indices: 458518--458694 Score: 154
Period size: 43 Copynumber: 4.2 Consensus size: 43
458508 TCAAGAAGAA
*
458518 TCAGTCCTGACCTTT-CAAGACAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGATCTTTTTGGTAAGG
* * ** *
458561 TCAGTCCTGACTTTGAAATACAGTATTGA-C----CAG-AAGAA
1 TCAGTCCTGACTTTGAAAGACAGTCTTGATCTTTTTGGTAAG-G
* *
458599 TCAGTCCTGATCTTT-CAAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGATCTTTTTGGTAAGG
* * *
458642 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGATCTTTTTGGTAAGG
* *
458685 TGAGTACTGA
1 TCAGTCCTGA
458695 TGACATACAA
Statistics
Matches: 104, Mismatches: 20, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
37 3 0.03
38 21 0.20
39 5 0.05
42 9 0.09
43 63 0.61
44 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.36
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGATCTTTTTGGTAAGG
Left flanking sequence: Indices 458018 -- 458517
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCT
GACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTA
AGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAA
Right flanking sequence: Indices 458695 -- 459194
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:458648 original size:81 final size:81
Alignment explanation
Indices: 458511--458672 Score: 279
Period size: 81 Copynumber: 2.0 Consensus size: 81
458501 TCACCTTTCA
458511 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
*
458576 AAATACAGTATTGACC
66 AAAGACAGTATTGACC
* * *
458592 AGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
*
458657 AAAGACAGTCTTGACC
66 AAAGACAGTATTGACC
458673 TTTTTGATAA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (81 bp):
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTG
AAAGACAGTATTGACC
Left flanking sequence: Indices 458011 -- 458510
GTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAAAGGT
CAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACCTTTCA
Right flanking sequence: Indices 458673 -- 459172
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTC
ATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTT
TCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
Found at i:458692 original size:231 final size:231
Alignment explanation
Indices: 458289--458715 Score: 827
Period size: 231 Copynumber: 1.8 Consensus size: 231
458279 TTCCATCAAA
458289 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
458354 ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
66 ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
458419 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
131 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
458484 ACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATC
196 ACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATC
* *
458520 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
*
458585 ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
66 ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
458650 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
131 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
458715 A
196 A
458716 TGGTCATTCC
Statistics
Matches: 193, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
231 193 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (231 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATC
Left flanking sequence: Indices 457789 -- 458288
CCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAAAAAGGTCAGTCCTGACCTTGAAATAAAGTATTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 458716 -- 459215
TGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATAC
AATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGA
AATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGT
Found at i:458808 original size:19 final size:19
Alignment explanation
Indices: 458741--458813 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
458731 CATTCTCATT
458741 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
458757 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
458781 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
458800 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
458814 CATTTTTGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.26
17 1 0.02
19 14 0.30
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.26
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 458241 -- 458740
TGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCA
GTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCT
TCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 458814 -- 459313
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
Found at i:458937 original size:43 final size:43
Alignment explanation
Indices: 458876--459003 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
458866 TTCCATCAAA
* * *
458876 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTT
1 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
458919 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
*
458962 AGTCCTGACTTTGAAATACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGT
459004 GAGTACTAAT
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 4 0.05
43 76 0.95
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (43 bp):
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
Left flanking sequence: Indices 458376 -- 458875
GATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAAACAGTCTTCACC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 459004 -- 459503
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Found at i:458946 original size:19 final size:19
Alignment explanation
Indices: 458919--458989 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
458909 TGGTAAGGTT
458919 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
458938 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
458962 AGTCCTGACTTTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
458981 AGTCTTGAC
1 AGTCCTGAC
458990 CTTTTTGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 16 0.39
20 3 0.07
21 5 0.12
22 5 0.12
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 458419 -- 458918
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCAAAACAGTCTTCACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 458990 -- 459489
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:459463 original size:24 final size:19
Alignment explanation
Indices: 459417--459492 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
459407 CTTCCATAAT
459417 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
459436 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCCTGACCTTT-C--AAG-A
459459 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
459479 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
459493 TTGGTCAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 26 0.53
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 458917 -- 459416
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 459493 -- 459992
TTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTT
TGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC
ATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAG
GTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCT
TGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGA
AAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGA
CAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAAT
Found at i:459531 original size:19 final size:20
Alignment explanation
Indices: 459504--459664 Score: 60
Period size: 19 Copynumber: 7.7 Consensus size: 20
459494 TGGTCAGGTT
459504 AGTCCTGA-CTTTGAAAGAC
1 AGTCCTGACCTTTGAAAGAC
* *
459523 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACC--TTTGA-AA-GAC
*
459547 AGTCCTGA-CTTTGAAATAC
1 AGTCCTGACCTTTGAAAGAC
** *
459566 AGTATTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTT-GA-AAG-A-C
* * *
459590 AGTCCTGATCTTT-CAAGAT
1 AGTCCTGACCTTTGAAAGAC
* * * *
459609 AGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-C-CTTT-G-AAAGAC
459633 AGTCCTGA-CTTTGAAAGAC
1 AGTCCTGACCTTTGAAAGAC
*
459652 AGTCTTGACCTTT
1 AGTCCTGACCTTT
459665 TTGATAAGGT
Statistics
Matches: 100, Mismatches: 26, Indels: 31
0.64 0.17 0.20
Matches are distributed among these distances:
19 32 0.32
20 13 0.13
21 15 0.15
22 7 0.07
23 4 0.04
24 29 0.29
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (20 bp):
AGTCCTGACCTTTGAAAGAC
Left flanking sequence: Indices 459004 -- 459503
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 459665 -- 460164
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTC
AAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTA
TACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATT
AGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGC
Found at i:459550 original size:24 final size:24
Alignment explanation
Indices: 459479--459555 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
459469 CCTTTCAAGA
* * *
459479 CAGTCTTGACCTTTTTGGTCAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
459503 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
459522 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
459546 CAGTCCTGAC
1 CAGTCCTGAC
459556 TTTGAAATAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 2 0.05
21 4 0.10
22 5 0.13
23 3 0.08
24 17 0.44
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 458979 -- 459478
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 459556 -- 460055
TTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGA
AGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATT
CTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAG
GAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
Found at i:459554 original size:129 final size:129
Alignment explanation
Indices: 459416--459683 Score: 421
Period size: 129 Copynumber: 2.1 Consensus size: 129
459406 CCTTCCATAA
* * *
459416 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
1 TCAGTCCTGA-CTTTGAAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGAC
* *
459480 AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
65 AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
* * *
459545 TCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATA
1 TCAGTCCTGACTTTGAAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACA
*
459610 GTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
66 GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
* *
459674 TGAGTACTGA
1 TCAGTCCTGA
459684 TGACATACAA
Statistics
Matches: 127, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
128 4 0.03
129 123 0.97
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (129 bp):
TCAGTCCTGACTTTGAAAGACAGTATTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
Left flanking sequence: Indices 458916 -- 459415
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 459684 -- 460183
TGACATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACA
Found at i:459667 original size:43 final size:43
Alignment explanation
Indices: 459416--459683 Score: 258
Period size: 43 Copynumber: 6.2 Consensus size: 43
459406 CCTTCCATAA
* *** *
459416 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* *
459459 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
459502 TTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* * *** *
459545 TCAGTCCTGA-CTTTGAAATACAGTATTGACCTTTCAAG-AAGAA
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-G
* * * *
459588 TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
*
459631 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACCTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
459674 TGAGTACTGA
1 TCAGTCCTGA
459684 TGACATACAA
Statistics
Matches: 187, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
42 11 0.06
43 167 0.89
44 9 0.05
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACCTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 458916 -- 459415
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTCAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 459684 -- 460183
TGACATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCA
TTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAA
AGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGA
AGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAA
AAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAA
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACA
Found at i:459980 original size:16 final size:16
Alignment explanation
Indices: 459959--459989 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
459949 AGGACCCTTT
459959 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
459975 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
459990 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 459459 -- 459958
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCTTTCAAGAAGAAT
CAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCATAAAGT
CCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAA
AGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAAT
TGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 459990 -- 460489
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTAATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATAC
CAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATT
TTCCATACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATC
Found at i:460056 original size:43 final size:42
Alignment explanation
Indices: 460008--460105 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
459998 TGATTGAGGA
* * * *
460008 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
460051 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
460093 AAAGATCAGAACT
1 AAAG-TCAGAACT
460106 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 459508 -- 460007
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTATTG
ACCTTTCAAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTT
GACCTTTCCATAAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGT
CAGACAAATCCTGAAAAGTACTGACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGA
AAGGAAAGGTTGCAATTGTATGCCATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 460106 -- 460605
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTAAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGC
AATTGTATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATCAATGAC
AATTGTCCATCAATATGAGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCC
TACGGTGCATTCAAAGTTGCGAGTGCTTTGTCGATTTGCGAGTGC
Found at i:460184 original size:28 final size:28
Alignment explanation
Indices: 460161--460252 Score: 184
Period size: 28 Copynumber: 3.3 Consensus size: 28
460151 TGACAATTGT
460161 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
460189 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
460217 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
460245 ATGCCATT
1 ATGCCATT
460253 TTCCATCAAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 459661 -- 460160
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCATAAAGTCCTCACC
TTTCAAGAAATGAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAAAAGTACTG
ACTATACAACAAATTGTATGCCATTCTTGCTTCCAATATGGAAAGGAAAGGTTGCAATTGTATGC
CATTAGTGTTCACACAAATGGAAAGGAAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 460253 -- 460752
TTCCATCAACAATGAGTACTCACCATACCAAGAAAGGTGAGGACTAATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTATACCAA
CATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTC
CATACAACAAATTGTATGCCATTAGTGAAAAGAATGAAGATCAATGACAATTGTCCATCAATATG
AGTTCCCTTCTTGTCTGATAGTCTATCAGAGTGAGTCTGAATCAGCCCTACGGTGCATTCAAAGT
TGCGAGTGCTTTGTCGATTTGCGAGTGCGTGCTTTGTGGGCTTTGCTCGTCAAAATGACGTGACG
TGACGGAGTCAAGCGAAGCGAGTGCTTTGTGCTTTGCCCTCTTGCTTCGCTTTGCGAGTTCCCTG
ACGCAATTCAAAGCGAGTGCTTTTTGAGGAAAGAGATCTGTTTGA
Found at i:470038 original size:16 final size:16
Alignment explanation
Indices: 470017--470047 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
470007 AGGACCCTTT
470017 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
470033 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
470048 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 469517 -- 470016
GCCGCCTCTGAGGCGTTTCCAAAGTCAACCGACGTCAGCGTCACGACTGGAAGGAAGGCATCCAT
GGAGTCACTTTTCCTTTGAAAAAGGTTCAATTTTTCAACTCCAGAGGGTCGCCTTTGGAAGCGTT
CGCCGGTAACCACAGCGTCACGATGGAAACCACTATAGTATAGGCTTCTCCCGTAGGGTCGCTGA
AGTAGGGCGCCCGCCTACCAATCAAAGAGGCGGAGAGTCCGCGTAAGCTCACCCGGAAGCTCGAA
GAGCTTTCGGAGCCAGAGAGGATAGAGTGGCGAAGGGGAGAAGCGACTCGTCGTAGAAGCTTCCT
AAAGCAAACGCTTCGCTACACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTC
TGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 470048 -- 470547
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
Found at i:470114 original size:43 final size:42
Alignment explanation
Indices: 470066--470163 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
470056 TGATTGAGGA
* * * *
470066 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
470109 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
470151 AAAGATCAGAACT
1 AAAG-TCAGAACT
470164 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 469566 -- 470065
GAAGGAAGGCATCCATGGAGTCACTTTTCCTTTGAAAAAGGTTCAATTTTTCAACTCCAGAGGGT
CGCCTTTGGAAGCGTTCGCCGGTAACCACAGCGTCACGATGGAAACCACTATAGTATAGGCTTCT
CCCGTAGGGTCGCTGAAGTAGGGCGCCCGCCTACCAATCAAAGAGGCGGAGAGTCCGCGTAAGCT
CACCCGGAAGCTCGAAGAGCTTTCGGAGCCAGAGAGGATAGAGTGGCGAAGGGGAGAAGCGACTC
GTCGTAGAAGCTTCCTAAAGCAAACGCTTCGCTACACGTCACGTCACGAGCAAAGCCAAAGCTTT
GCGAGTGCGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 470164 -- 470663
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
Found at i:470242 original size:28 final size:28
Alignment explanation
Indices: 470219--470338 Score: 224
Period size: 28 Copynumber: 4.3 Consensus size: 28
470209 TGACAATTGT
470219 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
470247 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
470275 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
470303 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
470331 ATGCCATT
1 ATGCCATT
470339 TTCCATCAAC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
28 88 0.97
29 3 0.03
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 469719 -- 470218
CGCCCGCCTACCAATCAAAGAGGCGGAGAGTCCGCGTAAGCTCACCCGGAAGCTCGAAGAGCTTT
CGGAGCCAGAGAGGATAGAGTGGCGAAGGGGAGAAGCGACTCGTCGTAGAAGCTTCCTAAAGCAA
ACGCTTCGCTACACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTGAAAGA
AGGGATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 470339 -- 470838
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAA
Found at i:470401 original size:19 final size:19
Alignment explanation
Indices: 470374--470444 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
470364 TATCAAAAAG
470374 GTCAAGACTGTATTTCAAA
1 GTCAAGACTGTATTTCAAA
*
470393 GTCAGGACTG-ACCTTATCAAAAA
1 GTCAAGACTGTA--TT-TC--AAA
*
470416 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTATTTCAAA
*
470436 GTCAGGACT
1 GTCAAGACT
470445 AACCTTACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
18 1 0.02
19 17 0.41
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTATTTCAAA
Left flanking sequence: Indices 469874 -- 470373
AGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTGAAAGAAGGGATCAAGGTTTGACGGATTGAT
GGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAG
GACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAA
GTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAA
AGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGG
TCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 470445 -- 470944
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Found at i:470421 original size:43 final size:43
Alignment explanation
Indices: 470360--470532 Score: 217
Period size: 43 Copynumber: 4.0 Consensus size: 43
470350 ATGAGTACTC
*
470360 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGT-CTTCAAAGGTCAGGACTG
*
470403 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTG
* *
470446 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
* * ** *
470489 ATTCTTCT-TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
470532 A
1 A
470533 TTATGGAAGG
Statistics
Matches: 117, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
42 5 0.04
43 109 0.93
44 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
Left flanking sequence: Indices 469860 -- 470359
CACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTGAAAGAAGGGATCAAGG
TTTGACGGATTGATGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGA
ATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGG
ACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTC
Right flanking sequence: Indices 470533 -- 471032
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:470480 original size:19 final size:19
Alignment explanation
Indices: 470456--470531 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
470446 ACCTTACCAA
470456 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
470475 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
470499 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
470518 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
470532 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 469956 -- 470455
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
AAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAAT
TGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATC
AACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 470532 -- 471031
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:470672 original size:43 final size:42
Alignment explanation
Indices: 470609--470778 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
470599 TTGTATGTCA
* * * *
470609 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
470652 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
470690 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
470728 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
470771 TCAGGACT
1 TCAGGACT
470779 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 470109 -- 470608
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTG
ACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCA
AAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 470779 -- 471278
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
AAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
Found at i:470802 original size:248 final size:252
Alignment explanation
Indices: 470353--470834 Score: 665
Period size: 248 Copynumber: 1.9 Consensus size: 252
470343 ATCAACAATG
* *
470353 AGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTATCAAAAAGG
1 AGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGA
* *
470418 TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
66 TCAAGACTATC-TT-AAAGTCAGGACTAACCTTA-C---AAGGTCAAGACTGTCTTCAAAGGTCA
* *** *
470483 GGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
125 GGACTGATCCTTCCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
470548 ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
190 ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
*
470611 AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGA
1 AGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGA
* ** * * *
470676 TCAAGACTATC-T-GA-TCAGGACTGATTCTT-C-TGGTCAAGACTGTATTTCACA-GTCAGGAC
66 TCAAGACTATCTTAAAGTCAGGACT-AACCTTACAAGGTCAAGACTGT-CTTCAAAGGTCAGGAC
*
470735 TGA-CCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACT-TTTGATGGAAGGACAGGAC
129 TGATCCTT-CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGAC
470798 CAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
192 CAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
470835 AAAATGGAAA
Statistics
Matches: 203, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
247 5 0.02
248 107 0.53
249 4 0.02
252 1 0.00
253 8 0.04
254 5 0.02
256 1 0.00
258 72 0.35
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (252 bp):
AGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGA
TCAAGACTATCTTAAAGTCAGGACTAACCTTACAAGGTCAAGACTGTCTTCAAAGGTCAGGACTG
ATCCTTCCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATC
Left flanking sequence: Indices 469853 -- 470352
TTCGCTACACGTCACGTCACGAGCAAAGCCAAAGCTTTGCGAGTGCGTGCTTTCTGAAAGAAGGG
ATCAAGGTTTGACGGATTGATGGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
CAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 470835 -- 471334
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCA
Found at i:470986 original size:19 final size:19
Alignment explanation
Indices: 470959--471029 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
470949 TATCAAAAAG
*
470959 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
470978 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
471001 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
471021 GTCAGGACT
1 GTCAAGACT
471030 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 470459 -- 470958
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 471030 -- 471529
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
Found at i:471006 original size:43 final size:43
Alignment explanation
Indices: 470945--471072 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
470935 ATTAGTACTC
* *
470945 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
470988 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
* *
471031 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
471073 GATTCTTCTG
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 5 0.06
43 75 0.94
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Left flanking sequence: Indices 470445 -- 470944
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 471073 -- 471572
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGA
Found at i:471011 original size:113 final size:116
Alignment explanation
Indices: 470766--471011 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
470756 GACTGTCTTG
*
470766 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
470830 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
470885 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
470949 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
470998 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
471012 TCTTTCAAAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 470266 -- 470765
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 471012 -- 471511
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
Found at i:471065 original size:19 final size:19
Alignment explanation
Indices: 471041--471150 Score: 77
Period size: 19 Copynumber: 5.7 Consensus size: 19
471031 ACCTTACCAA
471041 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471060 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
471080 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471098 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
471122 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
471138 AAAGGTCAGGACT
1 AAAGGTCAAGACT
471151 AATGAGAATG
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
16 13 0.18
17 6 0.08
19 33 0.46
21 4 0.06
24 16 0.22
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 470541 -- 471040
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 471151 -- 471650
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTT
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
Found at i:471095 original size:38 final size:38
Alignment explanation
Indices: 471044--471119 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
471034 TTACCAAAAA
471044 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
471082 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
471120 TGAAAGGTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 470544 -- 471043
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 471120 -- 471619
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACC
TTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
Found at i:471134 original size:43 final size:43
Alignment explanation
Indices: 470953--471150 Score: 186
Period size: 43 Copynumber: 4.8 Consensus size: 43
470943 TCACCTTATC
* * *
470953 AAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTAT
1 AAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATCCTTCT
* * *
470995 CAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACC
1 -AAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATCCTT-CT
*
471039 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATCCTTCT
*
471082 -----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATCCTTCT
**
471120 TGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
471151 AATGAGAATG
Statistics
Matches: 139, Mismatches: 7, Indels: 21
0.83 0.04 0.13
Matches are distributed among these distances:
38 38 0.27
40 15 0.11
41 2 0.01
42 6 0.04
43 74 0.53
44 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (43 bp):
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATCCTTCT
Left flanking sequence: Indices 470453 -- 470952
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTG
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
Right flanking sequence: Indices 471151 -- 471650
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTT
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
Found at i:471141 original size:16 final size:16
Alignment explanation
Indices: 471120--471150 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
471110 TGATTCTTCT
471120 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
471136 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
471151 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 470620 -- 471119
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 471151 -- 471650
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTT
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTG
Found at i:471382 original size:19 final size:19
Alignment explanation
Indices: 471351--471425 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
471341 ACCTTACCAA
*
471351 AAAGATCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471370 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* *
471394 AAAGGTGAAGACTGTTTTG
1 AAAGGTCAAGACTGTCTTG
471413 AAAGGTCAAGACT
1 AAAGGTCAAGACT
471426 CATTTGTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 28 0.62
24 17 0.38
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 470851 -- 471350
GACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
GAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 471426 -- 471925
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGA
AAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTACAGGTCAGGACTGACCTTACCAAAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTGAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATAC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTC
Found at i:471383 original size:43 final size:42
Alignment explanation
Indices: 471213--471384 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
471203 TTGTATGTCA
* * * *
471213 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
471256 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
471294 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
471332 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
471375 TCAGGACTGA
1 TCAGGACTGA
471385 TTCTTCTTGA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 5 0.05
43 52 0.53
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 470713 -- 471212
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGAC
TTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 471385 -- 471884
TTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCA
GTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGT
CAATACTGTATTTACAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTATTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGA
Found at i:471431 original size:19 final size:19
Alignment explanation
Indices: 471391--471431 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
471381 CTGATTCTTC
* **
471391 TTGAAAGGTGAAGACTGTT
1 TTGAAAGGTCAAGACTCAT
471410 TTGAAAGGTCAAGACTCAT
1 TTGAAAGGTCAAGACTCAT
471429 TTG
1 TTG
471432 TATGTCATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAGGTCAAGACTCAT
Left flanking sequence: Indices 470891 -- 471390
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Right flanking sequence: Indices 471432 -- 471931
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTTGAAAGGTCAATACTGTATTTACAGGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTGATTCTTATTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
Found at i:471483 original size:226 final size:224
Alignment explanation
Indices: 470979--471642 Score: 874
Period size: 226 Copynumber: 2.9 Consensus size: 224
470969 TCTTTCACAG
* *
470979 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
* * * *
471044 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGT-CTTGAAAGGTCAGG
66 GATCAAGACTATC-TG--A--TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAA-GTCAGG
* *** * ***
471108 ACTGATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAGAATGATTGAGGA
125 ACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---T--G-ATTATTCTTGA
* * ** *
471169 AAAGTCAGAACTCACCTT-ACCATACAAGACTCATTTGTATGTCA
183 AAGGTAAG-ACT-GTCTTGA-AATACAAGACTCATTTGTATGTCA
471213 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
471278 GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGAC
66 GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGAC
* *
471343 CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTG
131 CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATTCTTGAAAGGT-AAGACTG
*
471408 TTTTGAAAGGT-CAAGACTCATTTGTATGTCA
195 TCTTGAAA--TACAAGACTCATTTGTATGTCA
471439 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
1 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
*
471504 GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
66 GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGAC
* *
471569 CTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTG
131 CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATTCTTGAAAGGT-AAGACTG
471634 TCTTGAAAT
195 TCTTGAAAT
471643 CAGTACTGAC
Statistics
Matches: 393, Mismatches: 28, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
224 1 0.00
225 3 0.01
226 231 0.59
227 4 0.01
228 3 0.01
229 53 0.13
230 5 0.01
231 3 0.01
232 14 0.04
233 2 0.01
234 74 0.19
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (224 bp):
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATTCTTGAAAGGTAAGACTGT
CTTGAAATACAAGACTCATTTGTATGTCA
Left flanking sequence: Indices 470479 -- 470978
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
Right flanking sequence: Indices 471643 -- 472142
CAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAG
GTCAATACTGTATTTACAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTATTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
Found at i:471504 original size:43 final size:42
Alignment explanation
Indices: 471439--471821 Score: 180
Period size: 43 Copynumber: 9.2 Consensus size: 42
471429 TTGTATGTCA
* * * *
471439 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
471482 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * * *
471520 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAG
* *
471558 TCAGGACTGACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
471601 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * ***** * *
471642 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** *** * * * *
471684 ATCAGGACTGATTCTT-CTTGAAAGGTCAATACTGTATTTACAGG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGA-AAG
*
471728 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
471771 TCAGGACTGATTCTTA-TTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
471814 TCAGGACT
1 TCAGGACT
471822 GATTATGGAA
Statistics
Matches: 259, Mismatches: 61, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
33 10 0.04
35 1 0.00
37 4 0.02
38 16 0.06
39 6 0.02
41 36 0.14
42 8 0.03
43 169 0.65
44 9 0.03
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 470939 -- 471438
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGAC
TCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 471822 -- 472321
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
Found at i:471601 original size:19 final size:19
Alignment explanation
Indices: 471577--471822 Score: 109
Period size: 19 Copynumber: 11.7 Consensus size: 19
471567 ACCTGACCAA
471577 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471596 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
471620 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
471639 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
471661 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
471680 AAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* * *
471704 AAAGGTCAATACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
471723 ACAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
471747 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471766 AAAGGTCAGGACTGATTCTTATTG
1 AAAGGTCAAGACTG--TC---TTG
471790 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
471809 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
471823 ATTATGGAAG
Statistics
Matches: 174, Mismatches: 26, Indels: 54
0.69 0.10 0.21
Matches are distributed among these distances:
17 3 0.02
19 83 0.48
20 4 0.02
21 4 0.02
22 12 0.07
23 3 0.02
24 65 0.37
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 471077 -- 471576
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAA
Right flanking sequence: Indices 471823 -- 472322
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
Found at i:471623 original size:24 final size:22
Alignment explanation
Indices: 471591--471825 Score: 108
Period size: 24 Copynumber: 11.0 Consensus size: 22
471581 GTCAAGACTG
471591 TCTTGAAAGGTCAGGACTGATTTT
1 TCTTGAAAGGTCAGGACTGA--TT
*
471615 TCTTGAAAGGTCAAGACTG---
1 TCTTGAAAGGTCAGGACTGATT
*
471634 TCTTGAAA--TCAGTACTGACCTT
1 TCTTGAAAGGTCAGGACTGA--TT
* * *
471656 TTTTGAAAGATCAAGACT-A--
1 TCTTGAAAGGTCAGGACTGATT
*
471675 TCTTGAAAGATCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGA-T-T
** *
471699 TCTTGAAAGGTCAATACTG-TA
1 TCTTGAAAGGTCAGGACTGATT
*
471720 T-TT-ACAGGTCAGGACTGACCTT
1 TCTTGAAAGGTCAGGACTGA--TT
* *** *
471742 ACCAAAAAGGTCAAGACTG---
1 TCTTGAAAGGTCAGGACTGATT
471761 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGA-T-T
* *
471785 TATTGAAAGGTCAAGACTG---
1 TCTTGAAAGGTCAGGACTGATT
471804 TCTTGAAAGGTCAGGACTGATT
1 TCTTGAAAGGTCAGGACTGATT
471826 ATGGAAGGAC
Statistics
Matches: 156, Mismatches: 30, Indels: 52
0.66 0.13 0.22
Matches are distributed among these distances:
17 7 0.04
19 66 0.42
20 3 0.02
21 1 0.01
22 9 0.06
23 1 0.01
24 69 0.44
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (22 bp):
TCTTGAAAGGTCAGGACTGATT
Left flanking sequence: Indices 471091 -- 471590
TGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGA
GAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTGACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 471826 -- 472325
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
Found at i:471822 original size:43 final size:43
Alignment explanation
Indices: 471577--471825 Score: 301
Period size: 43 Copynumber: 5.8 Consensus size: 43
471567 ACCTGACCAA
* *
471577 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTG
*
471620 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTATTG
* * * *
471661 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTG
* * * * * ***
471704 AAAGGTCAATACTGTATTTACAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA-TTG
471747 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTG
471790 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
471826 ATGGAAGGAC
Statistics
Matches: 174, Mismatches: 24, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
41 34 0.20
42 7 0.04
43 129 0.74
44 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTG
Left flanking sequence: Indices 471077 -- 471576
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTAC
CAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGA
AGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTGACCAA
Right flanking sequence: Indices 471826 -- 472325
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
Found at i:472156 original size:19 final size:19
Alignment explanation
Indices: 472132--472207 Score: 71
Period size: 19 Copynumber: 3.7 Consensus size: 19
472122 ACCAAAAATG
472132 GAAAGGTCAAGACTGTCTT
1 GAAAGGTCAAGACTGTCTT
* *
472151 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAAGA--C--T-GTCTT
* *
472175 GAAAGGTCAGGACTGTCTG
1 GAAAGGTCAAGACTGTCTT
472194 GAAAGGTCAAGACT
1 GAAAGGTCAAGACT
472208 CATTTGTATG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
19 27 0.57
20 1 0.02
21 1 0.02
22 1 0.02
23 1 0.02
24 16 0.34
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (19 bp):
GAAAGGTCAAGACTGTCTT
Left flanking sequence: Indices 471632 -- 472131
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTTGAAAGGTCAATACTGTATTTACAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTATTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCA
GGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
Right flanking sequence: Indices 472208 -- 472707
CATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACA
AATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTC
ACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTT
Found at i:472250 original size:64 final size:63
Alignment explanation
Indices: 472176--472320 Score: 186
Period size: 64 Copynumber: 2.3 Consensus size: 63
472166 ATTCTTCTTG
472176 AAAGGTCAGGACTGTCTGGA-AAGGT-CAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
1 AAAGGTCAGGACTGTCT-GACAA--TACAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
472239 A
63 A
** * * *
472240 AAAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
1 AAAGGTCAGGACT-GTCTGACAATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
*
472304 AAAGGTCAAGACTGTCT
1 AAAGGTCAGGACTGTCT
472321 TTCACAGTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
63 3 0.04
64 64 0.91
65 3 0.04
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (63 bp):
AAAGGTCAGGACTGTCTGACAATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Left flanking sequence: Indices 471676 -- 472175
CTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAATACTGTATTTACAGGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTATTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Right flanking sequence: Indices 472321 -- 472820
TTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
Found at i:472348 original size:43 final size:43
Alignment explanation
Indices: 472285--472440 Score: 118
Period size: 43 Copynumber: 3.9 Consensus size: 43
472275 TTGTATGTCA
* * *
472285 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
* * *
472328 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
** * * *
472366 TCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
*
472404 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTT
472441 GAAAGGTCAG
Statistics
Matches: 81, Mismatches: 20, Indels: 24
0.65 0.16 0.19
Matches are distributed among these distances:
33 9 0.11
35 1 0.01
37 5 0.06
38 16 0.20
39 6 0.07
41 1 0.01
43 43 0.53
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 471785 -- 472284
TATTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATT
AGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTT
GAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 472441 -- 472940
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCAT
TGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTA
GTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGA
CTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
Found at i:472433 original size:76 final size:79
Alignment explanation
Indices: 472307--472463 Score: 230
Period size: 76 Copynumber: 2.0 Consensus size: 79
472297 TTATCAAAAA
*
472307 GGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
472369 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
472383 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
472448 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
472464 TGAAAGGTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.72
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 471807 -- 472306
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 472464 -- 472963
TGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACT
CACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGT
ACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
Found at i:472466 original size:24 final size:24
Alignment explanation
Indices: 472437--472506 Score: 131
Period size: 24 Copynumber: 2.9 Consensus size: 24
472427 GTCAAGACTG
*
472437 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
472461 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
472485 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
472507 GCAATTCAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 471937 -- 472436
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATAC
TGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 472507 -- 473006
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGAC
TACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
Found at i:472653 original size:28 final size:28
Alignment explanation
Indices: 472514--472643 Score: 235
Period size: 28 Copynumber: 4.6 Consensus size: 28
472504 ATTGCAATTC
472514 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
472542 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
472570 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
472598 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
472626 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
472644 CATACCAACA
Statistics
Matches: 100, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
27 2 0.02
28 98 0.98
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 472014 -- 472513
CACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGA
AGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGTCTGGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 472644 -- 473143
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTC
CGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGT
CAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTAC
TGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
Found at i:472790 original size:43 final size:43
Alignment explanation
Indices: 472733--473160 Score: 218
Period size: 43 Copynumber: 10.2 Consensus size: 43
472723 TTGTATGTCA
* * * *
472733 TCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAAG
* * *
472776 TCAGGACTGACCTTACCAAAAAGATCAAGAC--TATCTTGAAAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTAT-TTCAAAG
* * * * *
472818 ATCAGGACTGA--TTCTTC----TGGTCAATACTGTCTTTCACAG
1 -TCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGTATTTCAAAG
*
472857 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAAG
* * * *
472900 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-G
* * ** * *
472943 TCAGGACTGATTCTTCT-TGAAAGGTCAAGACTGT-CTTGAAAGG
1 TCAGGACTGA-CCTTATCAAAAAGGTCAAGACTGTATTTCAAA-G
* * ** * *
472986 TCAGGACTGA-TTTTTCTTGAAAGGTCAAGACTGT-CTTGAAA-
1 TCAGGACTGACCTTATC-AAAAAGGTCAAGACTGTATTTCAAAG
* * *** * *
473027 TCAGTACTGACCTTTTTTGAAAGATCAAGAC--TATCTTGAAAG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTAT-TTCAAAG
* * *
473069 ATCAGGACTGA--TTCTTC----TGGTCAAGACTGTATTTCAAGG
1 -TCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGTATTTCAAAG
* * *
473108 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGG
1 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-G
473151 TCAGGACTGA
1 TCAGGACTGA
473161 TTCTTCTGGT
Statistics
Matches: 307, Mismatches: 48, Indels: 60
0.74 0.12 0.14
Matches are distributed among these distances:
38 35 0.11
39 14 0.05
40 9 0.03
41 38 0.12
42 21 0.07
43 187 0.61
44 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCAAAG
Left flanking sequence: Indices 472233 -- 472732
ATACCAAAAAGGTCAGGACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAA
ACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTC
ATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 473161 -- 473660
TTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
Found at i:472853 original size:81 final size:80
Alignment explanation
Indices: 472755--473198 Score: 410
Period size: 81 Copynumber: 5.4 Consensus size: 80
472745 TTATCAAAAA
* * * *
472755 GGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGAT
472820 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
* * *
472836 GGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG-
1 GGTCAAGACTGTCTTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGA
** *
472900 TCAGGACT-AACCTTACCAAAAA
64 TCAGGACTGATTCTT--C----T
** * *** *
472922 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTCTTTCAA-GTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGA
*
472986 TCAGGACTGATTTTTCTT
64 TCAGGACTGATTCTTC-T
* * * ***** * *
473004 GAAAGGTCAAGACTGTC-TTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAA
1 ----GGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
473068 GATCAGGACTGATTCTTCT
62 GATCAGGACTGATTCTTCT
* *
473087 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGAT
473152 CAGGACTGATTCTTCT
65 CAGGACTGATTCTTCT
**
473168 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTTCAA-GTCAGGACTGA
473199 TTATGGAAGG
Statistics
Matches: 298, Mismatches: 47, Indels: 36
0.78 0.12 0.09
Matches are distributed among these distances:
79 12 0.04
80 8 0.03
81 139 0.47
82 7 0.02
83 4 0.01
84 48 0.16
85 11 0.04
86 63 0.21
87 6 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (80 bp):
GGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGATC
AGGACTGATTCTTCT
Left flanking sequence: Indices 472255 -- 472754
CCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCA
ATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACC
ATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCC
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 473199 -- 473698
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
Found at i:472865 original size:19 final size:19
Alignment explanation
Indices: 472843--472907 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
472833 TCTGGTCAAT
*
472843 ACTGTCTTTCACAGTCAGG
1 ACTGTCTTTCAAAGTCAGG
* *
472862 ACTGACCTTATCAAAAAGGTCAAG
1 ACTG-TCTT-TC--AAA-GTCAGG
472886 ACTGTCTTTCAAAGTCAGG
1 ACTGTCTTTCAAAGTCAGG
472905 ACT
1 ACT
472908 AACCTTACCA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
19 12 0.33
20 6 0.17
21 2 0.06
22 2 0.06
23 5 0.14
24 9 0.25
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (19 bp):
ACTGTCTTTCAAAGTCAGG
Left flanking sequence: Indices 472343 -- 472842
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTC
AGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACA
AACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGC
CATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCAT
ACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAT
Right flanking sequence: Indices 472908 -- 473407
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
Found at i:472888 original size:24 final size:24
Alignment explanation
Indices: 472856--472932 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
472846 GTCTTTCACA
*
472856 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
472880 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
472899 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
472923 GTCAAGACTG
1 GTCAAGACTG
472933 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 472356 -- 472855
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTG
AGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACA
Right flanking sequence: Indices 472933 -- 473432
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
Found at i:472943 original size:19 final size:19
Alignment explanation
Indices: 472919--473197 Score: 120
Period size: 19 Copynumber: 13.7 Consensus size: 19
472909 ACCTTACCAA
472919 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
472938 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
472962 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
472981 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
473005 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
473024 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
473046 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
473065 AAAGATCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
** * *
473085 -CTGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
473103 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
473127 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
473146 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
473166 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
473184 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
473198 ATTATGGAAG
Statistics
Matches: 198, Mismatches: 32, Indels: 60
0.68 0.11 0.21
Matches are distributed among these distances:
17 10 0.05
19 110 0.56
20 4 0.02
21 10 0.05
22 10 0.05
23 3 0.02
24 51 0.26
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 472419 -- 472918
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGG
TGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 473198 -- 473697
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
Found at i:472962 original size:24 final size:23
Alignment explanation
Indices: 472919--473018 Score: 108
Period size: 24 Copynumber: 4.6 Consensus size: 23
472909 ACCTTACCAA
472919 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
472938 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
472962 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
472981 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGA-TTTTCTTG
473005 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
473019 TCTTGAAATC
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
19 31 0.46
24 36 0.54
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTTTCTTG
Left flanking sequence: Indices 472419 -- 472918
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGG
TGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 473019 -- 473518
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
Found at i:473112 original size:38 final size:38
Alignment explanation
Indices: 472922--473200 Score: 242
Period size: 43 Copynumber: 6.9 Consensus size: 38
472912 TTACCAAAAA
472922 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
*
472961 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
1 ----GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC-T
* *
473004 GAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TTTT
1 ----GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCT
* *
473045 GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
1 G---G-TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
* ** * *
473087 GGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT--C----T
473130 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
473168 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
473201 ATGGAAGGAC
Statistics
Matches: 202, Mismatches: 18, Indels: 37
0.79 0.07 0.14
Matches are distributed among these distances:
37 4 0.02
38 57 0.28
39 2 0.01
40 1 0.00
41 28 0.14
42 7 0.03
43 100 0.50
44 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 472422 -- 472921
AAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTCTTC
TTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGA
GGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 473201 -- 473700
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:473338 original size:43 final size:42
Alignment explanation
Indices: 473275--473444 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
473265 TTGTATGTCA
* * * *
473275 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
473318 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
473356 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
473394 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
473437 TCAGGACT
1 TCAGGACT
473445 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 472775 -- 473274
GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 473445 -- 473944
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTCTGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCATACCAAAAGGATGAAGACTAATTGCAATTGTATGCCATGAGTACTCACTGTACAAACAAATG
CCATGAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCAT
Found at i:473677 original size:113 final size:116
Alignment explanation
Indices: 473432--473677 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
473422 GACTGTCTTG
*
473432 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * ***
473496 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
473551 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
473615 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTT-CCAA
*
473664 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
473678 TCTTGAAAGG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 3 0.03
113 40 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTCCAA
Left flanking sequence: Indices 472932 -- 473431
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 473678 -- 474177
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCATACCAAAAGGATGAAGACTAATTGCAATTGTATGC
CATGAGTACTCACTGTACAAACAAATGCCATGAGTACTCACTGTACAAACAAATGCCATTAGTGC
TCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTAT
GCCATTAGTGCTGACCATACAACCAATTGTATGCCATTAGTGTGTCATTGAAGAGAAAGACAATT
CAAATTTCTCCTTCCTTGATGATGATGTCCTGACACTATCAGAGTGATCTGAATCAGCCTCAAAG
ATCGACTTTGGTGTAGGGCGGCTAGGCATTAGGAATGAAGGGTCC
Found at i:473688 original size:19 final size:19
Alignment explanation
Indices: 473664--473778 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
473654 ACCTTACCAA
473664 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
473683 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
473707 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
473726 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
473750 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
473766 AAAGGTCAGGACT
1 AAAGGTCAAGACT
473779 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 12 0.15
17 1 0.01
19 27 0.34
20 3 0.04
21 5 0.06
22 4 0.05
23 2 0.03
24 26 0.32
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 473164 -- 473663
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 473779 -- 474278
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAGGATGAAGACTAATTGCAATTGTATGCCATGAGTACTCACTGTACAAACAAATGCCATGAGTA
CTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAA
GATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACAACCAATTGTATGCCA
TTAGTGTGTCATTGAAGAGAAAGACAATTCAAATTTCTCCTTCCTTGATGATGATGTCCTGACAC
TATCAGAGTGATCTGAATCAGCCTCAAAGATCGACTTTGGTGTAGGGCGGCTAGGCATTAGGAAT
GAAGGGTCCTCATATAGCACTACGAAACCAAGAAGCAAAGCATGAGAAAGCTCGACAAGTCGCTT
ATAGAAGTGTCATGCCGACTACCACTGTCAGGGGGGGGAGCGAAG
Found at i:473709 original size:24 final size:24
Alignment explanation
Indices: 473664--473762 Score: 110
Period size: 19 Copynumber: 4.5 Consensus size: 24
473654 ACCTTACCAA
473664 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
473683 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
473707 AAAGGTCAAGACTG--TC-T-T-G
1 AAAGGTCAAGACTGATTCTTCTGG
*
473726 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCTGG
473750 AAAGGTCAAGACT
1 AAAGGTCAAGACT
473763 CTGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 2 0.03
24 27 0.41
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (24 bp):
AAAGGTCAAGACTGATTCTTCTGG
Left flanking sequence: Indices 473164 -- 473663
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 473763 -- 474262
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAGGATGAAGACTAATTGCAATTGTATGCCATGAGTACTCACTGTACAA
ACAAATGCCATGAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATAC
AACCAATTGTATGCCATTAGTGTGTCATTGAAGAGAAAGACAATTCAAATTTCTCCTTCCTTGAT
GATGATGTCCTGACACTATCAGAGTGATCTGAATCAGCCTCAAAGATCGACTTTGGTGTAGGGCG
GCTAGGCATTAGGAATGAAGGGTCCTCATATAGCACTACGAAACCAAGAAGCAAAGCATGAGAAA
GCTCGACAAGTCGCTTATAGAAGTGTCATGCCGACTACCACTGTC
Found at i:473741 original size:43 final size:43
Alignment explanation
Indices: 473621--473778 Score: 209
Period size: 43 Copynumber: 3.7 Consensus size: 43
473611 ACCTTATCAA
* * * ***
473621 AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTGG
473664 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
473707 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
473750 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
473779 AATGAGAATG
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
40 15 0.14
41 2 0.02
42 4 0.04
43 83 0.78
44 3 0.03
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
Left flanking sequence: Indices 473121 -- 473620
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAA
Right flanking sequence: Indices 473779 -- 474278
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAGGATGAAGACTAATTGCAATTGTATGCCATGAGTACTCACTGTACAAACAAATGCCATGAGTA
CTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAA
GATGCCATTTTCCATACAACAAATTGTATGCCATTAGTGCTGACCATACAACCAATTGTATGCCA
TTAGTGTGTCATTGAAGAGAAAGACAATTCAAATTTCTCCTTCCTTGATGATGATGTCCTGACAC
TATCAGAGTGATCTGAATCAGCCTCAAAGATCGACTTTGGTGTAGGGCGGCTAGGCATTAGGAAT
GAAGGGTCCTCATATAGCACTACGAAACCAAGAAGCAAAGCATGAGAAAGCTCGACAAGTCGCTT
ATAGAAGTGTCATGCCGACTACCACTGTCAGGGGGGGGAGCGAAG
Found at i:473951 original size:28 final size:28
Alignment explanation
Indices: 473869--473941 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
473859 TTGCAATTGT
473869 ATGCCATGAGTACTCACTGTACAAACAA
1 ATGCCATGAGTACTCACTGTACAAACAA
473897 ATGCCATGAGTACTCACTGTACAAACAA
1 ATGCCATGAGTACTCACTGTACAAACAA
* *
473925 ATGCCATTAGTGCTCAC
1 ATGCCATGAGTACTCAC
473942 CATACCAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (28 bp):
ATGCCATGAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 473369 -- 473868
TTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAA
AGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGAC
CAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACT
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAGGATGAAGACTAATTGCAATTGT
Right flanking sequence: Indices 473942 -- 474441
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCA
TTAGTGCTGACCATACAACCAATTGTATGCCATTAGTGTGTCATTGAAGAGAAAGACAATTCAAA
TTTCTCCTTCCTTGATGATGATGTCCTGACACTATCAGAGTGATCTGAATCAGCCTCAAAGATCG
ACTTTGGTGTAGGGCGGCTAGGCATTAGGAATGAAGGGTCCTCATATAGCACTACGAAACCAAGA
AGCAAAGCATGAGAAAGCTCGACAAGTCGCTTATAGAAGTGTCATGCCGACTACCACTGTCAGGG
GGGGGAGCGAAGCTTAGCGAGCTTTATAAGGCCGACCACTACATCAGCCTAGCGGTCATCGGCTT
TCCAAGCTTCGAGCTTCCCGTTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAGCCCGCGCTTTTT
CGAAGAATCCTGCACCCATGGGCATACGGCCTGGCAGGCCTTCCC
Found at i:487472 original size:19 final size:18
Alignment explanation
Indices: 487448--487488 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 18
487438 CAATTATGGA
487448 AGGACTCTCTTGAAAGGTC
1 AGGACTCTC-TGAAAGGTC
487467 AGGA--CTCTGAAAGGTC
1 AGGACTCTCTGAAAGGTC
487483 AGGACT
1 AGGACT
487489 AATGAGAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 13 0.65
17 3 0.15
19 4 0.20
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (18 bp):
AGGACTCTCTGAAAGGTC
Left flanking sequence: Indices 486948 -- 487447
ACATAAAGAAAAGAATGAAGAGGAACGGGGACTTCCGGCATCAGCCCTTGAAGCTCATGAATTAA
TTGACGAAAAGGATGACCAAGCTCCGTAAGTGGACAAAGAGACTCTTCGTCTCTTTGGTCTACCT
TAGGCTTTTTTGGAAAAAGAGTTCATGCCATTCGGTCGGTGAAAGGTAGGTCTTATGCGAGGTAT
TCCCAAAGCACTCGCTTCGGAGCTACAGGCTTTGCTCGTACGCAAAGACAAAAGTCAGGCTTTGC
GAGTACAAAGCACTCGACTCGCAAAGCCTTTCATGTCACGTCACGAGCCAATTTCAAAGTCAAGG
TCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAA
GCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGA
GCACTAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGA
Right flanking sequence: Indices 487489 -- 487988
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
TCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
Found at i:487479 original size:16 final size:16
Alignment explanation
Indices: 487458--487488 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
487448 AGGACTCTCT
487458 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
487474 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
487489 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 486958 -- 487457
AAGAATGAAGAGGAACGGGGACTTCCGGCATCAGCCCTTGAAGCTCATGAATTAATTGACGAAAA
GGATGACCAAGCTCCGTAAGTGGACAAAGAGACTCTTCGTCTCTTTGGTCTACCTTAGGCTTTTT
TGGAAAAAGAGTTCATGCCATTCGGTCGGTGAAAGGTAGGTCTTATGCGAGGTATTCCCAAAGCA
CTCGCTTCGGAGCTACAGGCTTTGCTCGTACGCAAAGACAAAAGTCAGGCTTTGCGAGTACAAAG
CACTCGACTCGCAAAGCCTTTCATGTCACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACA
TGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGA
AGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGG
CAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCT
Right flanking sequence: Indices 487489 -- 487988
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
TCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAC
Found at i:487557 original size:43 final size:43
Alignment explanation
Indices: 487509--487590 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
487499 ATTGAGGAAA
* * * *
487509 AGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
*
487552 AGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTT
1 AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTT
487591 GAAAGATCAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (43 bp):
AGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTTCAC
Left flanking sequence: Indices 487009 -- 487508
TTAATTGACGAAAAGGATGACCAAGCTCCGTAAGTGGACAAAGAGACTCTTCGTCTCTTTGGTCT
ACCTTAGGCTTTTTTGGAAAAAGAGTTCATGCCATTCGGTCGGTGAAAGGTAGGTCTTATGCGAG
GTATTCCCAAAGCACTCGCTTCGGAGCTACAGGCTTTGCTCGTACGCAAAGACAAAAGTCAGGCT
TTGCGAGTACAAAGCACTCGACTCGCAAAGCCTTTCATGTCACGTCACGAGCCAATTTCAAAGTC
AAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTG
GAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATT
GGGAGCACTAATGGCAATTGTATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTTGAAAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
Right flanking sequence: Indices 487591 -- 488090
GAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAA
TTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGA
CTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGT
Found at i:487742 original size:28 final size:28
Alignment explanation
Indices: 487660--487732 Score: 137
Period size: 28 Copynumber: 2.6 Consensus size: 28
487650 TGACAATTGT
487660 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
487688 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
*
487716 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
487733 CATACCAACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 487160 -- 487659
CGGAGCTACAGGCTTTGCTCGTACGCAAAGACAAAAGTCAGGCTTTGCGAGTACAAAGCACTCGA
CTCGCAAAGCCTTTCATGTCACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATT
CAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGT
GTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCAATTGT
ATGCCTTCAAGAATTGCACAATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
ACAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 487733 -- 488232
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAAT
CAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
Found at i:488002 original size:76 final size:80
Alignment explanation
Indices: 487875--488107 Score: 244
Period size: 76 Copynumber: 2.9 Consensus size: 80
487865 CTTATCAAAA
* *
487875 AGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGT-TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
487937 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
*
487952 -GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGT-TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
488016 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * * * *
488034 GAAAGGTCAAGACTGTCTTGA-AATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAC
1 ---AGGTCAAGACTGTTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TTGA-
488098 AGTCAGGACT
61 AGTCAGGACT
488108 AACCTTACCA
Statistics
Matches: 133, Mismatches: 11, Indels: 17
0.83 0.07 0.11
Matches are distributed among these distances:
76 52 0.39
77 2 0.02
79 1 0.01
81 15 0.11
82 1 0.01
84 44 0.33
85 6 0.05
86 12 0.09
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (80 bp):
AGGTCAAGACTGTTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 487375 -- 487874
CACTAATGGCATACAATTGCCATTGGGAGCACTAATGGCAATTGTATGCCTTCAAGAATTGCACA
ATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTGAC
CAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTG
AAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAAC
AGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 488108 -- 488607
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCA
CAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGGACTCCTTATGGAAGGAC
AGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACCA
Done.