123.fas.2.7.7.80.10.50.500.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  15  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452215--452615	81	4.9	79	74	13	277	30	18	20	29	1.96
452190--452563	122	3.0	121	78	6	419	32	18	19	30	1.96
452690--452859	43	4.2	42	70	18	135	32	22	18	25	1.97
453040--453110	19	3.5	19	70	17	61	29	23	19	26	1.98
452847--453092	119	2.1	116	83	8	297	33	19	22	25	1.97
453122--453193	19	3.7	19	72	22	60	31	16	27	23	1.96
453026--453622	43	14.0	43	69	14	238	32	19	20	27	1.97
453262--453588	81	4.0	80	81	6	404	31	19	20	29	1.97
453383--453665	19	13.7	19	68	21	97	30	17	22	30	1.96
453302--453612	165	1.9	165	97	1	588	31	18	20	29	1.96
453562--453646	24	3.8	24	80	15	117	27	17	24	30	1.97
453259--453665	43	9.7	43	75	12	312	31	18	20	28	1.97
453562--453669	24	4.9	24	73	20	110	27	17	23	31	1.97
453679--453839	43	3.9	43	69	14	129	33	22	15	27	1.95
453701--454119	81	5.0	81	69	18	277	32	20	19	26	1.97
453917--454151	43	5.7	43	73	13	165	33	19	20	26	1.97
454077--454151	19	3.7	19	77	16	78	30	16	26	26	1.96
454095--454175	24	3.6	24	79	16	109	28	17	28	25	1.97
454077--454175	43	2.3	43	94	0	171	29	17	26	27	1.97
454187--454313	28	4.5	28	97	2	229	37	24	12	25	1.91
454187--454350	56	3.1	56	88	8	229	36	24	12	26	1.91
454272--454368	48	2.0	48	85	0	131	31	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454595--454644	19	2.6	19	90	0	73	30	12	32	26	1.92
454701--454802	28	3.6	28	96	2	179	37	25	11	25	1.90
455059--455144	28	3.4	27	71	24	87	30	12	23	33	1.92
455191--455236	24	1.9	24	100	0	92	32	21	19	26	1.97
455331--455483	43	3.8	42	67	19	110	26	16	22	34	1.95
455497--455546	19	2.6	19	90	0	73	26	26	16	32	1.96
455561--455707	45	3.2	45	63	14	118	25	20	20	33	1.97
455516--455711	94	2.1	94	97	0	365	25	21	18	34	1.96
456173--456354	28	6.5	28	98	1	348	25	11	24	37	1.89
456424--456507	43	2.0	43	85	0	114	25	13	21	40	1.89
456526--456556	16	1.9	16	100	0	62	19	32	16	32	1.94
456678--456830	43	3.8	42	67	19	110	26	16	22	34	1.95
456908--456983	19	3.7	19	79	16	89	25	28	15	30	1.96
456905--457023	43	2.8	44	88	2	161	26	26	17	30	1.97
456661--457238	291	2.0	295	91	4	954	25	20	20	33	1.97
456941--457099	76	2.0	78	86	8	225	27	21	21	30	1.98
457047--457143	43	2.3	41	85	3	122	23	16	21	38	1.93
457207--457376	43	4.2	43	67	18	130	26	17	21	34	1.96
457423--457532	19	5.7	19	70	20	77	26	27	17	29	1.97
457452--457529	38	2.1	38	100	0	156	30	28	17	23	1.97
457499--457628	43	3.0	43	90	2	199	23	19	20	36	1.95
457544--457614	19	3.5	19	70	17	52	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457672--457760	24	3.9	24	80	14	116	30	25	16	26	1.97
457700--457774	19	3.7	19	77	16	78	26	25	16	32	1.96
457675--457774	43	2.3	43	92	0	164	27	26	17	30	1.97
457741--457912	43	4.2	42	66	18	103	26	17	22	34	1.96
457734--457890	76	2.0	78	87	6	228	28	18	21	31	1.97
457990--458068	19	3.9	19	80	15	95	27	27	15	29	1.96
457700--458320	291	2.1	295	90	3	986	27	20	19	32	1.97
457987--458051	24	2.9	24	80	15	86	30	26	15	27	1.96
457989--458088	19	4.6	23	69	21	74	28	27	16	29	1.97
458009--458088	24	3.5	24	72	19	66	28	26	16	28	1.97
457987--458088	43	2.4	43	93	6	172	29	26	15	28	1.96
458129--458225	43	2.3	43	85	3	126	23	16	21	38	1.93
458289--458463	43	4.2	43	70	16	143	26	18	21	33	1.96
458289--458441	81	1.9	81	91	0	252	26	20	20	32	1.97
458477--458551	19	3.7	19	73	16	69	28	25	13	33	1.93
458518--458694	43	4.2	43	72	13	154	25	17	20	35	1.95
458511--458672	81	2.0	81	93	0	279	27	18	20	33	1.96
458289--458715	231	1.8	231	98	0	827	28	18	20	33	1.96
458741--458813	19	3.7	19	74	20	62	23	28	16	31	1.96
458876--459003	43	3.0	43	93	2	204	24	18	20	36	1.95
458919--458989	19	3.5	19	71	17	61	26	19	19	33	1.96
459417--459492	19	3.7	19	79	16	89	25	28	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459504--459664	19	7.7	20	63	19	60	26	18	19	35	1.95
459479--459555	24	3.4	24	67	17	65	20	20	22	36	1.95
459416--459683	129	2.1	129	90	1	421	25	20	19	34	1.96
459416--459683	43	6.2	43	80	5	258	25	20	19	34	1.96
459959--459989	16	1.9	16	100	0	62	32	16	32	19	1.94
460008--460105	43	2.3	42	83	3	124	40	21	16	21	1.91
460161--460252	28	3.3	28	100	0	184	38	25	10	26	1.88
470017--470047	16	1.9	16	100	0	62	32	16	32	19	1.94
470066--470163	43	2.3	42	83	3	124	40	21	16	21	1.91
470219--470338	28	4.3	28	97	2	224	38	25	10	25	1.88
470374--470444	19	3.5	19	69	23	54	33	19	19	26	1.96
470360--470532	43	4.0	43	87	4	217	34	19	20	25	1.96
470456--470531	19	3.7	19	79	16	89	30	15	27	26	1.96
470609--470778	43	4.2	42	68	18	126	33	22	18	25	1.96
470353--470834	248	1.9	252	85	7	665	33	20	19	26	1.97
470959--471029	19	3.5	19	71	17	61	30	22	19	26	1.98
470945--471072	43	3.0	43	93	2	204	35	21	18	24	1.96
470766--471011	119	2.1	116	83	8	297	33	19	22	25	1.97
471041--471150	19	5.7	19	69	21	77	29	17	26	27	1.97
471044--471119	38	2.0	38	100	0	152	23	18	26	31	1.97
470953--471150	43	4.8	43	83	12	186	32	19	22	25	1.97
471120--471150	16	1.9	16	93	0	53	35	16	29	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471351--471425	19	3.7	19	73	16	69	33	13	25	28	1.93
471213--471384	43	4.2	42	69	18	130	34	21	18	25	1.96
471391--471431	19	2.2	19	86	0	55	31	9	26	31	1.89
470979--471642	226	2.9	224	87	6	874	33	19	19	27	1.96
471439--471821	43	9.2	42	71	11	180	32	19	20	28	1.97
471577--471822	19	11.7	19	68	21	109	31	16	22	29	1.96
471591--471825	24	11.0	22	65	21	108	31	16	22	30	1.95
471577--471825	43	5.8	43	81	7	301	31	16	22	29	1.95
472132--472207	19	3.7	19	75	16	71	30	17	27	25	1.97
472176--472320	64	2.3	63	82	8	186	33	23	17	25	1.97
472285--472440	43	3.9	43	64	19	118	32	23	16	27	1.96
472307--472463	76	2.0	79	87	6	230	30	22	19	28	1.98
472437--472506	24	2.9	24	97	0	131	25	18	22	32	1.97
472514--472643	28	4.6	28	97	1	235	37	25	11	25	1.89
472733--473160	43	10.2	43	73	14	218	32	19	19	28	1.97
472755--473198	81	5.4	80	78	9	410	31	19	21	28	1.97
472843--472907	19	3.2	19	70	19	58	30	23	18	27	1.97
472856--472932	24	3.4	24	68	17	74	36	22	19	22	1.95
472919--473197	19	13.7	19	68	20	120	29	17	23	29	1.97
472919--473018	24	4.6	23	77	17	108	30	15	26	29	1.95
472922--473200	43	6.9	38	78	14	242	29	17	23	30	1.97
473275--473444	43	4.2	42	67	18	117	33	22	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473432--473677	119	2.1	116	83	8	297	33	19	22	24	1.97
473664--473778	19	5.7	19	73	22	92	30	16	27	25	1.97
473664--473762	19	4.5	24	77	17	110	30	16	27	26	1.96
473621--473778	43	3.7	43	89	5	209	31	18	25	24	1.98
473869--473941	28	2.6	28	95	0	128	35	26	15	23	1.94
487448--487488	16	2.3	18	80	20	59	29	19	29	21	1.98
487458--487488	16	1.9	16	100	0	62	32	16	32	19	1.94
487509--487590	43	1.9	43	87	0	119	36	24	15	23	1.94
487660--487732	28	2.6	28	97	0	137	35	26	12	26	1.91
487875--488107	76	2.9	80	82	10	244	31	21	19	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20