123.fas.2.7.7.80.10.50.500.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  14  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417133--417272	73	2.0	66	82	9	163	30	15	27	26	1.95
417206--417290	19	4.6	19	86	4	122	29	16	28	25	1.97
417309--417406	43	2.3	42	85	3	133	40	21	15	22	1.90
417462--417633	28	6.5	28	78	17	183	34	24	11	29	1.91
417462--417633	54	3.2	56	78	18	183	34	24	11	29	1.91
417572--417653	20	3.7	20	74	22	83	29	24	12	34	1.91
417570--417677	48	2.2	48	96	0	198	33	23	12	31	1.91
424692--424821	28	4.6	28	93	4	201	28	10	23	37	1.88
424891--424974	43	2.0	43	90	0	132	23	14	22	39	1.91
424993--425041	19	2.8	17	90	9	73	22	30	16	30	1.96
425121--425166	24	1.9	24	100	0	92	32	21	19	26	1.97
425149--425218	19	3.7	19	72	14	72	27	27	17	28	1.97
425140--425275	38	3.4	38	77	13	148	29	23	20	26	1.99
425149--425334	76	2.4	78	85	6	252	26	22	20	30	1.98
425282--425378	43	2.3	43	87	3	135	23	16	20	39	1.92
425657--425687	16	1.9	16	93	0	53	16	29	12	41	1.85
425674--425754	24	3.6	24	79	16	109	25	28	16	29	1.96
425674--425772	19	4.6	23	77	17	106	26	27	16	30	1.96
425658--425772	43	2.7	43	94	4	200	25	27	15	31	1.96
425696--425868	43	4.0	42	87	4	195	24	21	20	33	1.97
425698--425861	86	1.9	86	83	7	217	23	22	20	33	1.97
425759--425868	19	5.0	24	64	20	78	22	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426035--426204	43	4.2	42	70	18	135	25	18	22	32	1.97
426307--426360	19	2.8	19	88	0	81	25	31	14	27	1.95
426407--426554	28	5.3	28	100	0	296	25	10	25	38	1.88
426624--426705	43	1.9	43	89	0	128	24	14	24	36	1.93
426726--426756	16	1.9	16	100	0	62	19	32	16	32	1.94
426861--427030	43	4.2	42	69	18	126	25	17	22	33	1.96
427108--427183	19	3.7	19	79	16	89	26	27	15	30	1.96
427105--427169	24	2.9	24	80	15	86	30	26	15	27	1.96
427105--427556	43	10.9	42	75	12	314	27	21	19	32	1.97
427108--427223	19	5.6	19	67	18	52	25	25	18	29	1.98
427322--427429	19	5.2	19	75	20	108	29	25	14	30	1.95
427330--427415	24	3.8	23	80	14	108	31	25	15	27	1.95
427441--427511	19	3.5	19	70	17	52	26	19	21	32	1.97
427416--427492	24	3.4	24	67	17	65	20	20	22	36	1.95
429300--429325	12	2.2	12	100	0	52	50	0	15	34	1.45
431325--431395	37	1.9	37	94	0	124	29	15	18	36	1.92
431329--431421	32	2.7	34	80	11	102	29	15	23	32	1.95
431433--431562	28	4.6	28	93	4	201	28	10	23	37	1.88
431632--431715	43	2.0	43	90	0	132	23	14	22	39	1.91
431734--431764	16	1.9	16	100	0	62	19	32	16	32	1.94
431875--432044	43	4.2	43	70	18	148	25	18	21	33	1.97
432246--432330	24	3.8	24	81	15	126	30	25	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432246--432344	24	4.7	19	78	17	90	28	26	16	29	1.97
432246--432384	43	3.2	43	90	2	199	27	25	18	28	1.98
432269--432384	19	5.6	19	67	18	52	25	25	18	29	1.98
432268--432460	76	2.4	79	85	10	241	26	22	20	30	1.98
432408--432504	43	2.3	41	85	3	122	23	16	21	38	1.93
432568--432737	43	4.2	43	70	18	148	25	18	21	33	1.97
432784--432851	19	3.9	17	74	11	57	23	29	13	33	1.93
439742--439874	68	2.0	68	98	0	257	30	24	20	25	1.99
441736--441815	29	2.8	29	88	1	117	25	10	28	36	1.88
441898--441986	24	3.9	24	80	14	125	31	23	17	26	1.97
441902--442001	43	2.3	43	93	3	166	28	26	17	29	1.97
441868--442138	138	1.9	141	80	8	313	26	22	19	31	1.98
442078--442181	43	2.4	43	93	0	172	24	19	22	34	1.96
442107--442177	19	3.5	19	68	17	52	26	19	22	30	1.98
442107--442200	43	2.2	43	86	3	127	28	20	21	29	1.98
442256--442375	28	4.3	29	94	5	212	25	10	25	38	1.88
442445--442526	43	1.9	43	85	5	112	23	15	25	35	1.94
442547--442577	16	1.9	16	100	0	62	19	32	16	32	1.94
443281--443353	28	2.6	28	93	0	128	24	13	26	35	1.93
443574--443777	43	4.9	43	76	10	224	26	16	23	33	1.96
443603--443673	19	3.5	19	68	17	52	26	19	22	30	1.98
443578--443654	24	3.4	24	65	17	65	22	19	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443916--444101	28	6.6	28	93	3	313	24	12	25	38	1.90
443916--444101	84	2.2	84	99	0	363	24	12	25	38	1.90
444113--444197	24	3.8	24	80	15	117	30	24	17	27	1.97
444137--444211	19	3.7	19	78	16	87	26	26	16	30	1.96
444137--444327	76	2.4	78	84	8	233	26	21	19	31	1.98
444350--444414	19	3.2	19	76	19	76	29	24	13	32	1.94
444137--444552	43	10.2	42	72	13	273	27	19	20	32	1.97
444147--444553	203	2.0	203	98	0	778	27	19	20	33	1.96
444566--444683	19	5.7	19	74	18	83	27	25	16	29	1.97
444562--444666	24	4.8	23	77	18	100	29	24	17	28	1.97
444562--444891	43	7.8	43	78	11	272	28	21	18	30	1.97
444453--445081	193	3.4	190	71	22	645	28	20	19	31	1.97
444784--444848	19	3.2	19	76	19	76	29	24	13	32	1.94
444299--445246	358	2.7	357	91	4	1481	28	20	19	31	1.97
444938--445027	24	3.9	24	77	15	109	31	25	16	26	1.97
444967--445041	19	3.7	19	78	16	87	25	28	16	30	1.96
445142--445206	19	3.2	19	76	19	76	29	24	13	32	1.94
444967--445344	43	9.2	42	72	14	236	27	20	19	32	1.97
445876--445906	16	1.9	16	100	0	62	32	16	32	19	1.94
445925--446022	43	2.3	42	83	3	124	40	21	16	21	1.91
446078--446197	28	4.3	28	95	4	208	38	25	10	25	1.88
446241--446313	19	3.6	19	75	15	74	26	19	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446271--446316	24	1.9	24	100	0	92	26	19	21	32	1.97
446379--446460	20	3.7	20	74	22	83	29	24	12	34	1.91
446921--446985	22	3.1	22	69	13	64	30	12	26	30	1.92
446994--447167	43	4.2	42	71	15	146	34	22	17	25	1.96
447016--447167	80	1.9	80	93	0	259	33	21	19	25	1.97
447272--447302	16	1.9	16	100	0	62	32	16	32	19	1.94
447321--447418	43	2.3	42	85	3	133	40	21	15	22	1.90
447474--447655	28	6.5	28	98	1	348	37	24	11	25	1.89
448979--449018	18	2.5	15	78	21	53	45	12	20	22	1.84
448985--449020	18	2.0	18	100	0	72	38	16	16	27	1.90
450595--450665	19	3.5	19	69	23	54	33	19	19	26	1.96
450614--450690	24	3.4	24	68	17	74	36	22	19	22	1.95
450594--451290	43	16.7	42	71	15	249	31	19	20	27	1.97
450553--450956	81	4.9	79	73	16	311	31	18	21	28	1.97
450677--450955	19	13.7	19	68	20	120	29	17	23	29	1.97
451138--451202	19	3.2	19	66	26	51	32	21	18	27	1.97
450840--451536	334	2.1	334	96	1	1297	32	20	19	26	1.97
451214--451289	19	3.7	19	79	16	89	30	15	28	25	1.96
451703--451875	43	4.0	43	86	4	208	34	19	21	24	1.96
451703--451812	19	5.0	24	65	23	80	38	20	18	22	1.94
451799--451897	19	4.5	24	77	17	110	30	16	27	26	1.96
451799--451913	43	2.7	43	94	4	200	31	15	27	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451884--451914	16	1.9	16	93	0	53	41	12	29	16	1.85
451960--452136	43	4.2	42	71	13	150	34	21	18	25	1.96
451982--452143	81	2.0	81	93	0	279	32	20	19	27	1.97
452103--452177	19	3.7	19	73	16	69	33	13	25	28	1.93
452143--452183	19	2.2	19	86	0	55	31	9	26	31	1.89
452207--452615	43	9.9	43	77	13	317	31	17	21	29	1.96
452282--452352	24	3.2	24	63	19	62	38	22	14	25	1.92
452022--452370	193	1.8	188	85	5	495	33	18	18	29	1.95
452339--452612	19	13.7	19	66	20	96	29	17	23	29	1.97
452342--452615	38	6.9	38	76	16	268	28	17	23	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20