123.fas.2.7.7.80.10.50.500.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  13  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384613--384805	76	2.4	78	86	8	246	25	22	20	31	1.98
384645--385641	255	3.8	253	75	13	875	26	20	19	33	1.97
384930--385082	43	3.8	42	68	19	119	26	16	22	33	1.96
385128--385158	16	1.9	16	93	0	53	16	29	12	41	1.85
385145--385225	24	3.6	24	79	16	109	25	28	16	29	1.96
385145--385243	19	4.6	23	77	17	106	26	27	16	30	1.96
385129--385243	43	2.7	43	94	4	200	25	27	15	31	1.96
385167--385339	43	4.0	43	88	3	199	24	21	19	34	1.96
385230--385339	19	5.0	24	65	23	80	22	18	20	38	1.94
385411--385480	19	3.7	19	72	14	72	27	27	17	28	1.97
385386--385683	43	7.3	42	71	17	202	27	21	19	31	1.97
385402--385537	38	3.4	38	79	13	157	30	22	20	26	1.98
385411--385596	76	2.4	78	86	6	261	26	22	20	30	1.98
385619--385683	19	3.2	19	76	19	76	29	24	13	32	1.94
385421--385822	203	2.0	198	95	3	716	27	18	20	32	1.96
385447--385821	43	9.2	42	69	15	252	26	18	20	33	1.96
385835--385884	19	2.6	19	93	0	82	28	28	14	30	1.95
385856--385914	30	2.0	28	87	6	82	22	30	13	33	1.92
385884--385940	19	2.9	19	81	5	69	26	28	12	33	1.92
385999--386148	28	5.6	28	83	13	194	28	10	24	36	1.89
386001--386147	48	2.8	51	87	11	194	28	10	24	36	1.89
386156--386201	24	1.9	24	100	0	92	32	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386296--386448	43	3.8	42	67	19	110	26	16	22	34	1.95
386456--386536	19	4.0	19	77	14	72	29	23	17	29	1.97
386457--386522	24	3.0	23	85	12	86	33	21	18	27	1.96
386505--386674	43	4.2	42	68	18	126	25	18	22	33	1.96
386279--386695	226	1.8	226	98	0	807	27	17	21	32	1.96
386721--386751	16	1.9	16	93	0	53	19	29	16	35	1.93
386721--386845	43	3.0	43	83	8	134	24	21	20	32	1.98
387029--387181	43	3.8	42	67	19	110	26	16	22	34	1.95
387259--387329	19	3.7	19	73	14	74	26	28	16	28	1.97
387256--387386	38	3.3	38	79	14	156	29	24	19	27	1.98
387296--387489	43	4.8	42	72	15	158	25	20	20	34	1.96
387258--387445	76	2.4	78	86	6	265	26	22	20	30	1.98
387570--387722	43	3.8	42	68	19	119	26	16	22	33	1.96
387691--387826	45	3.2	45	65	14	124	29	17	20	32	1.96
387730--387786	19	3.0	19	92	0	87	29	26	14	29	1.95
387672--387826	83	1.9	83	89	2	240	29	18	20	31	1.96
387852--387882	16	1.9	16	93	0	53	19	29	16	35	1.93
388173--388203	16	1.9	16	93	0	53	35	16	29	19	1.93
388269--388325	19	3.0	19	92	0	87	29	14	26	29	1.95
388229--388383	83	1.9	83	89	2	240	31	20	18	29	1.96
388333--388502	43	4.2	42	67	18	117	33	22	18	25	1.96
388355--388795	76	5.4	78	70	16	295	32	20	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388566--388757	43	4.7	43	69	17	142	34	20	19	25	1.96
388669--388799	38	3.3	38	79	14	156	27	19	24	29	1.98
388726--388796	19	3.7	19	73	14	74	28	16	28	26	1.97
388474--389043	286	2.0	291	91	4	949	32	20	20	26	1.97
388874--389043	43	4.2	42	67	18	117	34	22	17	25	1.96
389031--389276	119	2.1	116	83	8	297	33	19	22	24	1.97
389210--389334	43	3.0	43	83	8	134	32	20	21	24	1.98
389304--389334	16	1.9	16	93	0	53	35	16	29	19	1.93
389381--389550	43	4.2	42	67	18	126	34	21	18	25	1.96
389403--389845	76	5.4	78	71	16	308	32	20	20	25	1.97
389614--389805	43	4.7	43	69	17	142	34	20	19	25	1.96
388767--389805	255	4.1	252	75	12	1110	33	20	20	25	1.97
389717--389847	38	3.3	38	79	14	156	27	19	24	29	1.98
389774--389844	19	3.7	19	73	14	74	28	16	28	26	1.97
389922--390091	43	4.2	42	67	18	117	33	22	17	25	1.96
389522--390091	286	2.0	291	91	4	940	32	20	20	26	1.97
390060--390253	99	2.0	99	84	7	254	34	19	21	25	1.96
390169--390214	24	1.9	24	100	0	92	26	19	21	32	1.97
390222--390328	28	3.8	28	95	4	198	37	25	11	26	1.89
390483--390668	86	2.2	86	93	0	318	33	17	22	26	1.96
390541--390588	24	2.0	25	83	4	62	29	12	18	39	1.88
390627--390672	24	1.9	24	100	0	92	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390459--390644	43	4.3	43	82	0	237	34	18	20	25	1.96
390680--390829	28	5.6	28	81	16	194	36	24	10	28	1.89
390737--390833	48	2.0	48	93	0	167	35	24	10	29	1.89
392460--392489	15	1.9	16	93	6	53	26	13	50	10	1.73
398391--398517	55	2.3	55	91	5	204	27	13	23	35	1.92
398736--398856	28	4.3	28	96	2	217	26	10	23	38	1.88
398982--399202	43	5.2	42	80	4	246	26	19	20	33	1.96
399076--399140	19	3.2	19	74	19	67	30	23	13	32	1.93
398986--399183	84	2.3	85	82	5	229	26	20	19	34	1.96
398982--399576	127	4.6	127	68	19	452	27	20	19	32	1.97
399216--399333	19	5.7	19	74	18	83	27	25	16	29	1.97
399212--399316	24	4.8	23	77	18	100	29	24	17	28	1.97
399212--399620	43	9.9	43	72	13	209	28	20	19	32	1.97
399291--399449	76	2.0	78	89	6	241	27	19	22	30	1.98
399472--399536	19	3.2	19	76	19	76	29	24	13	32	1.94
399421--399617	84	2.4	80	84	7	236	27	20	18	33	1.96
405493--405605	32	3.4	32	83	11	154	31	23	16	28	1.96
407131--407160	15	2.0	15	93	0	51	30	10	33	26	1.89
409593--409623	16	1.9	16	100	0	62	32	16	32	19	1.94
409642--409739	43	2.3	42	83	3	124	40	21	16	21	1.91
409795--409914	28	4.3	28	95	4	224	38	25	10	25	1.88
409987--410087	43	2.3	43	93	0	166	32	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409988--410058	19	3.5	19	68	17	52	30	22	19	26	1.98
410070--410140	19	3.7	19	73	14	74	28	16	28	26	1.97
409987--410101	43	2.7	43	89	2	151	33	21	21	23	1.98
410218--410387	43	4.2	42	68	18	126	33	22	18	25	1.96
410539--410708	43	4.2	42	67	18	117	32	22	18	25	1.97
410677--410757	19	4.0	19	74	14	72	29	16	24	29	1.96
410765--411147	43	9.2	42	74	11	234	32	19	20	27	1.97
410451--410972	226	2.3	227	95	2	922	32	19	20	27	1.97
410908--411147	19	11.7	19	67	22	94	31	17	22	29	1.96
411087--411171	24	3.8	24	80	15	117	27	17	24	30	1.97
410846--411171	43	7.7	43	77	11	336	30	18	21	29	1.97
411203--411323	28	4.3	28	97	2	226	38	24	10	25	1.88
413929--413998	19	3.7	19	88	0	113	27	27	17	28	1.97
414013--414058	24	1.9	24	100	0	92	32	21	19	26	1.97
414270--414376	19	5.0	22	70	18	91	28	14	26	31	1.94
414188--414545	43	8.5	42	78	10	290	30	17	22	29	1.97
414195--414521	127	2.6	127	83	6	371	31	17	23	27	1.97
414461--414549	24	3.9	24	75	14	107	26	17	24	30	1.98
414652--414752	28	3.6	28	98	0	193	36	25	11	25	1.90
414775--414823	24	2.1	24	88	3	73	38	26	10	24	1.87
415093--415123	5	6.2	5	92	0	53	22	22	35	19	1.96
416153--416223	19	3.5	19	70	17	52	32	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416139--417068	86	11.0	83	67	16	351	32	19	20	27	1.97
416235--416349	19	5.7	19	73	22	92	30	16	27	25	1.97
416235--416333	19	4.5	24	77	17	110	30	16	27	26	1.96
416419--416489	19	3.5	19	71	17	61	30	22	19	26	1.98
416501--416784	19	13.7	19	68	20	126	30	16	23	29	1.97
416120--416599	266	1.8	266	97	0	906	32	19	21	27	1.97
416149--416807	43	15.3	43	76	12	430	32	18	22	27	1.97
416851--417068	43	5.2	43	75	10	218	34	21	17	26	1.95
416974--417050	24	3.4	24	68	17	74	36	22	19	22	1.95
416873--417025	81	1.9	81	86	2	218	33	20	18	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20