123.fas.2.7.7.80.10.50.500.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  11  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311851--312022	43	4.2	42	69	18	130	33	22	18	25	1.96
311989--312069	19	4.0	19	74	14	72	29	16	24	29	1.96
311830--312279	226	2.0	226	98	0	864	32	20	18	28	1.96
312077--312454	43	9.2	42	69	13	126	31	19	19	28	1.97
312215--312454	19	11.7	19	66	21	83	30	17	22	30	1.96
312394--312478	24	3.8	24	80	15	117	27	17	24	30	1.97
312215--312478	43	6.3	43	78	11	287	30	17	21	30	1.96
312490--312616	28	4.5	28	98	2	238	37	24	11	25	1.90
312490--312660	56	3.2	56	89	8	243	36	23	11	27	1.90
312710--312772	32	2.0	32	87	12	94	28	14	23	33	1.94
313207--313376	43	4.2	42	67	18	117	33	22	18	25	1.96
313228--313620	76	4.8	78	69	18	262	34	20	19	25	1.96
313440--313631	43	4.7	43	70	17	151	34	20	18	25	1.96
313206--313716	255	2.0	255	99	0	1004	34	20	19	25	1.96
313709--313754	24	1.9	24	100	0	92	26	19	21	32	1.97
313600--313784	99	1.9	95	86	6	264	31	18	22	27	1.97
313852--313882	16	1.9	16	93	0	53	35	16	29	19	1.93
313925--314104	64	2.8	64	94	0	288	32	23	17	26	1.96
314116--314218	28	3.7	28	96	3	190	37	25	10	26	1.88
314390--314431	22	1.9	22	90	0	66	30	11	28	28	1.92
314889--314934	24	1.9	24	100	0	92	32	21	19	26	1.97
315026--315203	43	4.4	41	69	17	140	26	17	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315284--315436	43	3.8	42	68	19	119	26	16	22	33	1.96
314927--315437	255	2.0	255	98	0	995	25	19	20	34	1.96
315499--315544	19	2.3	19	85	7	56	23	28	17	30	1.97
320501--320606	32	3.4	32	73	21	107	30	16	22	31	1.95
320618--320747	28	4.6	28	93	4	201	28	10	23	37	1.88
320817--320898	43	1.9	43	89	0	128	24	14	24	36	1.93
320919--320967	19	2.8	17	90	9	73	22	30	16	30	1.96
321128--321158	16	1.9	16	93	0	53	16	29	12	41	1.85
321145--321238	19	4.6	21	73	16	83	27	26	17	28	1.97
321158--321235	38	2.1	38	100	0	156	30	28	17	23	1.97
321205--321334	43	3.0	43	90	2	199	23	20	21	35	1.96
321225--321334	19	5.0	24	64	20	78	22	18	22	36	1.95
321381--321521	43	3.4	42	70	16	114	28	21	19	31	1.97
321598--321643	24	1.9	24	100	0	92	32	21	19	26	1.97
321568--321752	99	1.9	95	85	6	255	27	22	18	31	1.97
321735--321890	43	3.9	43	68	19	127	26	16	24	32	1.96
321968--322251	19	13.7	19	69	20	135	28	23	16	30	1.97
321965--322029	24	2.9	24	80	15	86	30	26	15	27	1.96
321965--322337	43	8.8	43	81	9	369	28	22	17	31	1.97
322152--322237	24	3.8	23	80	14	108	31	25	15	27	1.95
322263--322333	19	3.5	19	73	17	70	26	19	21	32	1.97
331229--331264	15	2.4	15	90	0	54	13	41	19	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331269--331308	20	2.0	20	95	0	71	20	42	15	22	1.88
338232--338262	16	1.9	16	100	0	62	32	16	32	19	1.94
338281--338378	43	2.3	42	83	3	124	40	21	16	21	1.91
338434--338553	28	4.3	28	95	4	208	38	25	10	25	1.88
338588--338661	19	3.6	19	80	16	85	25	18	27	28	1.98
338600--338664	24	2.9	24	80	19	95	26	18	23	32	1.97
338747--338826	29	2.8	29	88	1	117	36	28	10	25	1.88
338965--339065	28	3.6	28	98	0	193	25	11	25	36	1.90
339049--339228	95	1.9	98	84	6	251	27	22	17	32	1.96
339197--339409	43	5.2	43	74	14	198	25	17	22	34	1.96
339240--339310	19	3.5	19	70	17	52	26	19	21	32	1.97
339215--339291	24	3.4	24	68	17	74	22	19	22	36	1.95
339487--339627	43	3.3	43	78	7	171	27	21	18	31	1.97
339563--339627	19	3.2	19	74	19	67	27	23	15	33	1.95
339487--339746	84	3.2	85	85	9	344	26	20	20	32	1.97
339512--339765	43	6.2	42	71	14	208	26	18	21	33	1.97
339832--339951	28	4.3	29	94	5	212	25	10	25	38	1.88
340021--340104	43	2.0	43	87	0	123	22	15	22	39	1.92
340123--340153	16	1.9	16	100	0	62	19	32	16	32	1.94
343858--343949	19	4.7	19	83	4	103	32	8	34	23	1.86
343898--343951	19	2.8	19	100	0	108	27	14	33	24	1.94
343853--343951	39	2.6	38	83	4	117	32	9	33	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343996--344026	16	1.9	16	100	0	62	32	16	32	19	1.94
344045--344142	43	2.3	42	83	3	124	40	21	16	21	1.91
344198--344317	28	4.3	28	95	4	208	38	25	10	25	1.88
344466--344496	16	1.9	16	100	0	62	32	16	32	19	1.94
344534--344574	19	2.1	20	95	4	75	24	19	24	31	1.98
344580--344713	28	4.4	31	90	7	190	36	21	11	30	1.89
344579--344713	60	2.2	60	83	13	188	36	22	11	30	1.89
344913--344976	28	2.3	28	94	5	112	37	25	10	26	1.89
345130--345160	16	1.9	16	100	0	62	32	16	32	19	1.94
345198--345238	19	2.1	20	95	4	75	24	19	24	31	1.98
345244--345377	28	4.4	31	90	7	190	36	21	11	30	1.89
345243--345377	60	2.2	60	83	13	188	36	22	11	30	1.89
345547--345602	29	1.9	29	92	0	94	39	26	8	25	1.85
345511--345633	50	2.5	48	83	7	133	37	26	8	26	1.86
345584--345623	21	1.9	21	100	0	80	40	30	7	22	1.81
347702--347883	28	6.5	28	98	1	348	25	11	24	37	1.89
347953--348036	43	2.0	43	90	0	132	23	14	22	39	1.91
348055--348085	16	1.9	16	100	0	62	19	32	16	32	1.94
348070--348155	24	3.8	24	79	14	119	30	23	19	26	1.98
348055--348160	24	5.2	19	72	23	74	28	25	18	27	1.98
348055--348169	43	2.7	43	93	4	191	26	24	18	30	1.98
348095--348169	19	3.7	19	73	16	69	26	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348095--348307	43	5.2	42	70	15	133	26	18	21	32	1.97
348385--348460	19	3.7	19	79	16	89	25	28	15	30	1.96
348384--348620	43	5.8	42	74	13	192	26	21	19	33	1.97
348418--348576	76	2.0	78	86	6	223	27	20	20	30	1.98
348701--348853	43	3.8	42	68	19	119	26	16	22	33	1.96
348095--348772	291	2.3	284	86	7	792	26	20	20	32	1.97
348900--348930	16	1.9	16	93	0	53	19	29	16	35	1.93
349049--349162	43	2.7	43	95	0	201	24	17	23	34	1.96
349078--349148	19	3.5	19	70	17	61	26	19	23	29	1.98
349096--349162	19	3.0	24	66	20	72	23	17	22	35	1.95
349346--349498	43	3.8	42	67	19	110	26	16	22	34	1.95
349576--349859	19	13.7	19	69	20	135	29	23	16	30	1.97
349573--349637	24	2.9	24	80	15	86	30	26	15	27	1.96
349573--349991	43	9.9	43	81	9	443	28	21	17	31	1.96
349760--349845	24	3.8	23	80	14	108	31	25	15	27	1.95
349842--349945	19	4.8	22	66	20	76	25	18	21	35	1.95
349928--349991	19	3.1	19	76	14	56	31	20	15	32	1.94
350021--350095	19	3.7	19	73	16	69	28	25	13	33	1.93
350062--350233	43	4.2	42	67	18	121	25	18	22	34	1.96
350055--350211	76	2.0	78	88	6	237	27	19	21	31	1.97
355976--356057	43	1.9	43	89	0	128	36	24	14	24	1.93
356127--356246	28	4.3	28	95	4	208	38	25	10	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356282--356352	19	3.5	19	73	17	70	32	21	19	26	1.97
356268--356440	43	4.0	43	90	3	226	34	19	21	24	1.97
356364--356439	19	3.7	19	79	16	89	30	15	28	25	1.96
356517--356686	43	4.2	42	67	18	117	34	22	17	25	1.96
356261--356742	248	1.9	252	85	7	665	33	21	19	26	1.97
356810--356866	19	2.6	23	76	23	77	24	19	24	31	1.98
356749--356863	19	5.8	20	68	13	76	26	20	25	28	1.99
357244--357325	43	1.9	43	89	0	128	36	24	14	24	1.93
357395--357514	28	4.3	28	95	4	224	38	25	10	25	1.88
357736--357790	28	2.0	28	92	0	92	38	27	9	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20