Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 1 of 20
Found at i:13837 original size:37 final size:37
Alignment explanation
Indices: 13787--13946 Score: 320
Period size: 37 Copynumber: 4.3 Consensus size: 37
13777 AGGGACAAAG
13787 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
1 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
13824 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
1 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
13861 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
1 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
13898 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
1 CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
13935 CACTCGCAAAGC
1 CACTCGCAAAGC
13947 TTCGCTTAAG
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 123 1.00
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (37 bp):
CACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGT
Left flanking sequence: Indices 13287 -- 13786
TAGATAATGTTTGAGGATCTAGAAGAGTCTTTGGACCGTTGGATGCGCACCATGTGGCGCGATCC
TGACCATTAATGTCAGGCCCTGAGGCCTCACTCAGGAGGGGGAGAAGTTTTGGCATAACCTCAAG
AGCAAACAACTCTTGTAAGCATTCTTGTACCAAACTCCTTCTTTCAATACAAAGAGCTTTTCCCC
TTTTCACTCTCTCTCGCCCTAAGTGCTTTGTGGAGTCTCAGTGTCCTAGCATAGGCAACGAGAGT
TAGGCTGACTCGAGCAAGTGTGGAGGCTTTGCACGAGTGCCGCACGGGTGTTTAGACAAGGATAA
CCCCGTGACAAGTAGCTGGATTCGGAAAGGGTGAAAGGGATTCTCCGACTATCCGAACTTTCTGT
CTCTTTCTGTTCCCACGGAGATGCGACCATCACGACTCGACGACGGAACCATATGTCTTTATGTA
TGGGGAAGCCAGGCATACTCATCCAGCGGGATGAGAGGGACAAAG
Right flanking sequence: Indices 13947 -- 14446
TTCGCTTAAGGGCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTC
AACGTCACGAGCAAAGCCCCCAGCGTCACGAGCCATTTTCAAAGTCAAGGTCAGCGTACATGACT
TTGCTTTGCATTTCATCAAAGTAATGCCATTCAATTCAAAGTTGCGAGTACTTTGTGCAATATTG
AAAGCCAAAGCGAAGCGAGTGTGCTTCAGATTTGTGGAAACACTAATGGCATACAATTTGTTGTA
TGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
TGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAA
TGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
Found at i:14313 original size:28 final size:28
Alignment explanation
Indices: 14272--14326 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
14262 TGAGTACTCA
*
14272 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTGGTACAGTGAGTACTAATGGCATT
*
14300 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTGGTACAGTGAGTACTAATGGCAT
14327 ACAATTGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.38
Consensus pattern (28 bp):
TGTTGGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 13772 -- 14271
ATGAGAGGGACAAAGCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCG
AAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACT
CGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCTTCGCTTAAGGGCTTTTTTA
GTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAGCAAAGCCCC
CAGCGTCACGAGCCATTTTCAAAGTCAAGGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAA
GTAATGCCATTCAATTCAAAGTTGCGAGTACTTTGTGCAATATTGAAAGCCAAAGCGAAGCGAGT
GTGCTTCAGATTTGTGGAAACACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 14327 -- 14826
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
Found at i:14488 original size:95 final size:98
Alignment explanation
Indices: 14310--14489 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
14300 TGTTTGTACA
* *
14310 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
14375 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
14409 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
14470 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
14490 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 13810 -- 14309
TGCGAGTGCTTTGTCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCGA
AGCAAGCTTTGCGAGTGCTTTGTCACTCGCAAAGCGAAGCAAGCTTTGCGAGTGCTTTGTCACTC
GCAAAGCTTCGCTTAAGGGCTTTTTTAGTCAATCATGCATGCGTTGGCTTTGAAAGCTTTTTGAA
AGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCACGAGCCATTTTCAAAGTCAAGGTCAGCGTA
CATGACTTTGCTTTGCATTTCATCAAAGTAATGCCATTCAATTCAAAGTTGCGAGTACTTTGTGC
AATATTGAAAGCCAAAGCGAAGCGAGTGTGCTTCAGATTTGTGGAAACACTAATGGCATACAATT
TGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGA
GTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
Right flanking sequence: Indices 14490 -- 14989
TTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACA
AATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
Found at i:14522 original size:43 final size:43
Alignment explanation
Indices: 14475--14675 Score: 216
Period size: 43 Copynumber: 4.8 Consensus size: 43
14465 ACCTTTCAAG
* *
14475 ACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
*
14518 ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
*** * * *
14561 ACAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGA---TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTGTGAAAT
* * *
14601 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
* * *
14642 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
14676 TGACATACAA
Statistics
Matches: 128, Mismatches: 23, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
38 22 0.17
39 3 0.02
40 4 0.03
41 3 0.02
42 3 0.02
43 93 0.73
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (43 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
Left flanking sequence: Indices 13975 -- 14474
TGCATGCGTTGGCTTTGAAAGCTTTTTGAAAGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCA
CGAGCCATTTTCAAAGTCAAGGTCAGCGTACATGACTTTGCTTTGCATTTCATCAAAGTAATGCC
ATTCAATTCAAAGTTGCGAGTACTTTGTGCAATATTGAAAGCCAAAGCGAAGCGAGTGTGCTTCA
GATTTGTGGAAACACTAATGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGG
AGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATT
TGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 14676 -- 15175
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACA
GTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTTTGTA
TTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTG
Found at i:14528 original size:19 final size:19
Alignment explanation
Indices: 14501--14571 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
14491 TGGTCAGGTT
14501 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
* *
14520 AGTCTTGACCTTTTTGATAAGGT-C
1 AGTCCTGA-C--TGTGA-AA--TAC
14544 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAATAC
*
14563 AGTCTTGAC
1 AGTCCTGAC
14572 CTTTCAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 14
0.68 0.08 0.24
Matches are distributed among these distances:
18 1 0.03
19 16 0.40
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 8 0.20
25 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (19 bp):
AGTCCTGACTGTGAAATAC
Left flanking sequence: Indices 14001 -- 14500
TGAAAGCACTCAACGTCACGAGCAAAGCCCCCAGCGTCACGAGCCATTTTCAAAGTCAAGGTCAG
CGTACATGACTTTGCTTTGCATTTCATCAAAGTAATGCCATTCAATTCAAAGTTGCGAGTACTTT
GTGCAATATTGAAAGCCAAAGCGAAGCGAGTGTGCTTCAGATTTGTGGAAACACTAATGGCATAC
AATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATG
GTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 14572 -- 15071
CTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGT
GAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTT
CAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCT
TGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTG
Found at i:14937 original size:43 final size:42
Alignment explanation
Indices: 14890--15042 Score: 101
Period size: 43 Copynumber: 3.8 Consensus size: 42
14880 ACCTTTCAAG
14890 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* ** * * *
14933 ACAGTATTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
14968 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
15009 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
15043 TGACATACAA
Statistics
Matches: 80, Mismatches: 18, Indels: 24
0.66 0.15 0.20
Matches are distributed among these distances:
33 7 0.09
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 37 0.46
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 14390 -- 14889
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATAC
AGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 15043 -- 15542
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCC
TGACCTTTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCAT
TTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTA
CTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGA
AGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTC
AGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGAC
Found at i:15091 original size:19 final size:19
Alignment explanation
Indices: 15067--15118 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
15057 GTCTTGACCT
* *
15067 TCCTGACCTTTCCAGAGAG
1 TCCTGACCTTTCCAAAGAA
*
15086 TCCTGACCTTTCAAAAGAA
1 TCCTGACCTTTCCAAAGAA
15105 TCCTGACCTTTCCA
1 TCCTGACCTTTCCA
15119 TAATTTTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (19 bp):
TCCTGACCTTTCCAAAGAA
Left flanking sequence: Indices 14567 -- 15066
TTGACCTTTCAAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCT
Right flanking sequence: Indices 15119 -- 15618
TAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTACA
GTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATA
CAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTG
ACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGAC
Found at i:15322 original size:28 final size:28
Alignment explanation
Indices: 15165--15312 Score: 280
Period size: 28 Copynumber: 5.3 Consensus size: 28
15155 TTTGATGGAA
15165 AATGGCATTTGTTTGT-ACAGTGAGTACT
1 AATGGCATTTGTTTGTCA-AGTGAGTACT
15193 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
15221 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
15249 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
15277 AATGGCATTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTGTTTGTCAAGTGAGTACT
15305 AATGGCAT
1 AATGGCAT
15313 ACAATTGTCA
Statistics
Matches: 119, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
28 118 0.99
29 1 0.01
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.39
Consensus pattern (28 bp):
AATGGCATTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 14665 -- 15164
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAG
ACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCAT
AATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAA
Right flanking sequence: Indices 15313 -- 15812
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCT
GACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAT
ACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:15430 original size:43 final size:43
Alignment explanation
Indices: 15382--15463 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
15372 CTGATCTTTC
* * *
15382 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
15425 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
15464 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 14882 -- 15381
CTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTT
TCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTTTGTATTAATGCCATA
GTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTT
GTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 15464 -- 15963
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGA
CCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGG
Found at i:15505 original size:16 final size:16
Alignment explanation
Indices: 15484--15514 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
15474 CATTCTCATT
15484 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
15500 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
15515 AGAAGAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 14984 -- 15483
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCT
TTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 15515 -- 16014
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGA
CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTT
Found at i:15531 original size:24 final size:24
Alignment explanation
Indices: 15500--15584 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
15490 GACCTTTCAG
*
15500 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGAAGAATC
15524 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
* *
15543 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
15567 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
15585 CAGTATTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 13 0.25
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 31 0.60
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 15000 -- 15499
CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGAC
CTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATAATTTTTTGT
ATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTG
TTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGA
GTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 15585 -- 16084
CAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAA
Found at i:15551 original size:19 final size:19
Alignment explanation
Indices: 15484--15598 Score: 83
Period size: 24 Copynumber: 5.7 Consensus size: 19
15474 CATTCTCATT
15484 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
15500 AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTC---AAG-A-C
15524 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
15543 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
15567 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
**
15586 AGTATTGACCTTT
1 AGTCCTGACCTTT
15599 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 14 0.17
19 24 0.30
20 5 0.06
21 6 0.07
22 3 0.04
23 2 0.02
24 27 0.33
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 14984 -- 15483
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCT
TTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 15599 -- 16098
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
Found at i:15563 original size:43 final size:43
Alignment explanation
Indices: 15484--16143 Score: 248
Period size: 43 Copynumber: 15.7 Consensus size: 43
15474 CATTCTCATT
* *
15484 AGTCCTGACCTTTC-AG--AGTCCTGACCTTTCAAGAAGAATG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*
15524 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* *** *
15567 AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** *
15610 AGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * *** * *
15648 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAG-GTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** * ** * *
15686 AGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAG-GTC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACC-TTTCAAGAAGAATC
* *
15729 AGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAAAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
15770 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
** *
15813 AGTCCTGA-CTGTGAAATACAGTCTTGA-C---C-AGAAGAATC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * *** * *
15851 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAG-GTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
* ** * * *
15889 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAG-GTG
1 AGTCCTGACCTTT-CAAGACAGTCTTGACC-TTTCAAGAAGAATC
* * * * * * * *** *
15932 AGTACTGATGACATACAA-ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
1 AGTCCTGA--CCTTTCAAGA-CAGTCTTGA----CCTT--TCAA-GA--AGAATC
15986 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*
16026 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*** *
16069 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATC
**
16112 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTT
16144 TTGATAAGGT
Statistics
Matches: 467, Mismatches: 98, Indels: 107
0.69 0.15 0.16
Matches are distributed among these distances:
33 20 0.04
34 2 0.00
37 6 0.01
38 42 0.09
39 6 0.01
40 36 0.08
41 29 0.06
42 8 0.02
43 260 0.56
44 17 0.04
45 13 0.03
46 2 0.00
48 2 0.00
49 9 0.02
50 2 0.00
51 2 0.00
52 3 0.01
54 8 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 14984 -- 15483
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCT
TTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTT
GTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 16144 -- 16643
TTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTT
Found at i:15690 original size:76 final size:78
Alignment explanation
Indices: 15556--15714 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 78
15546 CTTGACCTTT
15556 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGA-CT
15621 -TGAAATACAGTCTTGA
62 GTGAAATACAGTCTTGA
* * * *
15637 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
15700 AATACAGTCTTGA
66 AATACAGTCTTGA
15713 CC
1 CC
15715 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
75 2 0.03
76 50 0.68
77 2 0.03
81 19 0.26
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGA
Left flanking sequence: Indices 15056 -- 15555
AGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCAAAAGAATCCTGACCTTTCCATA
ATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTACAGT
GAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAA
TGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACA
ATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTT
CAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 15715 -- 16214
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGA
AGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAA
TCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
Found at i:15761 original size:19 final size:19
Alignment explanation
Indices: 15737--15801 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
15727 TCAGTACTGA
15737 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
*
15756 TTTCAAGAAAAATCAGTCCTGACC
1 TTTCAAG----A-CAGTCTTGACC
15780 TTTCAAGACAGTCTTGACC
1 TTTCAAGACAGTCTTGACC
15799 TTT
1 TTT
15802 TTGGTAAGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 20 0.51
20 1 0.03
23 1 0.03
24 17 0.44
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (19 bp):
TTTCAAGACAGTCTTGACC
Left flanking sequence: Indices 15237 -- 15736
CAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGT
ACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAG
AAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTT
CAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAA
GAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Right flanking sequence: Indices 15802 -- 16301
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCT
TCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
Found at i:15787 original size:203 final size:203
Alignment explanation
Indices: 15534--15940 Score: 744
Period size: 203 Copynumber: 2.0 Consensus size: 203
15524 AGTCCTGACC
* *
15534 TTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
15599 TTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
66 TTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATA
*
15663 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
130 GTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
15728 CAGTACTGA
195 CAGTACTGA
*
15737 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
15802 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
66 TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
* *
15867 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
131 TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
15932 AGTACTGA
196 AGTACTGA
15940 T
1 T
15941 GACATACAAA
Statistics
Matches: 197, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
202 2 0.01
203 195 0.99
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (203 bp):
TTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTT
TTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGA
Left flanking sequence: Indices 15034 -- 15533
GAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCAGAGAGTCCTGACCTTTCA
AAAGAATCCTGACCTTTCCATAATTTTTTGTATTAATGCCATAGTCAGCACTAATTTTTGATGGA
AAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTC
AAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTA
AGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCC
TGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 15941 -- 16440
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTC
TTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
Found at i:16010 original size:16 final size:16
Alignment explanation
Indices: 15986--16016 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15976 CATTCTCATT
15986 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
16002 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
16017 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 15486 -- 15985
TCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCT
GACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 16017 -- 16516
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTT
CAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCT
TTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGT
ACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGT
CTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCT
GATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
Found at i:16034 original size:24 final size:24
Alignment explanation
Indices: 16002--16086 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
15992 GACCTTTCAG
*
16002 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
16026 AGTCCTGACCTTTC---AAG-A-C
1 AGTCCTGACCTTTCAAGAAGAATC
* *
16045 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTTCAAGAAGAATC
16069 AGTCCTGACCTTTCAAGA
1 AGTCCTGACCTTTCAAGA
16087 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 14 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 30 0.58
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (24 bp):
AGTCCTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 15502 -- 16001
TCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
AGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
TGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAA
GAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
Right flanking sequence: Indices 16087 -- 16586
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAA
GAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGA
TCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATT
GCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAC
Found at i:16053 original size:19 final size:19
Alignment explanation
Indices: 15986--16100 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
15976 CATTCTCATT
15986 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
16002 AGTCTTGACCTTTCAAGAAGAATC
1 AGTCCTGACCTTTC---AAG-A-C
16026 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
16045 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
16069 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
16088 AGTCTTGACCTTT
1 AGTCCTGACCTTT
16101 TTGGTAAGGT
Statistics
Matches: 81, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
16 13 0.16
19 26 0.32
20 5 0.06
21 6 0.07
22 3 0.04
23 2 0.02
24 26 0.32
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 15486 -- 15985
TCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAGTCCT
GACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTA
AGGTTAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 16101 -- 16600
TTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTC
Found at i:16242 original size:223 final size:211
Alignment explanation
Indices: 15637--16215 Score: 521
Period size: 203 Copynumber: 2.7 Consensus size: 211
15627 ACAGTCTTGA
* * *
15637 CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
1 CCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
* * * * * * * *
15702 TACAGTCTTGACCTTTTTGATAAGGTCAGTAC---TGA-TTTC-AA-GACAGTCTTGACCTT--T
66 GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACA-TATGGTCATTCCT
* ** * *** *
15759 CAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGA-C
130 C-ACATTAATCAGTCCTGACCTTTC-AG--AGTCCTGACCTTTCAAG-AAGAATCAGTCCTGACC
** *
15822 TGTGAAATACAGTCTTGA-----
190 T-TTCAAGACAGTCTTGACCTTT
* * * *
15840 CCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 CCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
* *
15905 GACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTC
66 GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGA--CAT-ATGGTCATTC
* * *
15970 CTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
128 CTC-A-CA-T-TAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGAC
16035 CTTTCAAGACAGTCTTGACCTTT
189 CTTTCAAGACAGTCTTGACCTTT
16058 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
1 CCAGAAGAATCAGTCCTGA----TC-AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTG
* * *
16123 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG-CA-ATTGGTCC
61 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATA-TGGTCA
16186 TGTCCTTC-CA-TAATCAGTCCTGACCTTTCA
125 T-TCC-TCACATTAATCAGTCCTGACCTTTCA
16216 AGAAGAATGA
Statistics
Matches: 314, Mismatches: 33, Indels: 46
0.80 0.08 0.12
Matches are distributed among these distances:
203 94 0.30
206 3 0.01
207 2 0.01
208 2 0.01
209 2 0.01
210 1 0.00
211 6 0.02
212 3 0.01
213 41 0.13
214 3 0.01
215 20 0.06
216 16 0.05
218 22 0.07
219 6 0.02
220 4 0.01
221 2 0.01
222 2 0.01
223 85 0.27
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (211 bp):
CCAGAAGAATCAGTCCTGATCAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGACATACAAATGACATATGGTCATTCCTC
ACATTAATCAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTT
Left flanking sequence: Indices 15137 -- 15636
CCATAGTCAGCACTAATTTTTGATGGAAAATGGCATTTGTTTGTACAGTGAGTACTAATGGCATT
TGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTG
ACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGA
CTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAGAAGAATGAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTATT
GACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGA
Right flanking sequence: Indices 16216 -- 16715
AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTG
ATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAA
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAT
ACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCT
Found at i:16384 original size:43 final size:42
Alignment explanation
Indices: 16337--16489 Score: 110
Period size: 43 Copynumber: 3.8 Consensus size: 42
16327 ACCTTTCAAG
16337 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
16380 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* *
16415 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
16456 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
16490 TGACATACAA
Statistics
Matches: 82, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 21 0.26
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 15837 -- 16336
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 16490 -- 16989
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
Found at i:16595 original size:19 final size:19
Alignment explanation
Indices: 16567--16850 Score: 126
Period size: 19 Copynumber: 13.7 Consensus size: 19
16557 CTTCCATAAT
*
16567 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
16586 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
16609 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
16629 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACC--TTT--CAA-GA
* ** *
16653 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
* **
16672 CAGTATTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
16690 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
16710 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
16729 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
16751 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
16774 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
16794 CAGTCTTGACCTTTCCAGAAGAA
1 CAGTCTTGACCTTT-C--AAG-A
*
16817 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
16837 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
16851 TTGGTAAGGT
Statistics
Matches: 204, Mismatches: 30, Indels: 62
0.69 0.10 0.21
Matches are distributed among these distances:
17 5 0.02
18 1 0.00
19 92 0.45
20 10 0.05
21 15 0.07
22 17 0.08
23 6 0.03
24 58 0.28
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 16067 -- 16566
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 16851 -- 17350
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTT
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCAC
TGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTA
TCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCC
CTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAG
CCCTCTTGTGAAGAGGGCTTTGCTCGTGACGTGACGTGATTGCAC
Found at i:16613 original size:24 final size:24
Alignment explanation
Indices: 16564--16628 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
16554 GTCCTTCCAT
16564 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
16585 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
16607 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
16629 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 16064 -- 16563
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 16629 -- 17128
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAA
TGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAA
Found at i:16625 original size:43 final size:43
Alignment explanation
Indices: 16564--16893 Score: 351
Period size: 43 Copynumber: 7.8 Consensus size: 43
16554 GTCCTTCCAT
16564 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
16607 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* ** * *
16651 -GTCAGTCCTGACCTTGAAATACAGTATTGA-C---C-AGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * *
16688 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
16729 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
*
16772 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
16815 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* * *
16859 -GTTAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTT
1 AATCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTT
16894 TTGATAAGGT
Statistics
Matches: 243, Mismatches: 29, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
37 3 0.01
38 24 0.10
39 1 0.00
41 34 0.14
42 10 0.04
43 165 0.68
44 6 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 16064 -- 16563
GAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 16894 -- 17393
TTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGT
CCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCAC
AAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGAC
AATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGA
TGAAGGTCACGTCAGAGCAAAGCCCTCTTGTGAAGAGGGCTTTGCTCGTGACGTGACGTGATTGC
ACAAAGCACTCGCTTTTCAGTGCTCATGACGTGACGGGAAGCCAA
Found at i:16784 original size:24 final size:23
Alignment explanation
Indices: 16751--16836 Score: 99
Period size: 24 Copynumber: 3.8 Consensus size: 23
16741 GATTTCAAGA
*
16751 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
16775 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
* *
16794 CAGTCTTGACCTTTCCAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
16818 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
16837 CAGTCTTGAC
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 16 0.31
20 1 0.02
23 1 0.02
24 34 0.65
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 16251 -- 16750
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
CAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 16837 -- 17336
CAGTCTTGACCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCT
TTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCA
ATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAA
TGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTC
ACGTCAGAGCAAAGCCCTCTTGTGAAGAGGGCTTTGCTCGTGACG
Found at i:16889 original size:19 final size:19
Alignment explanation
Indices: 16862--16932 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
16852 TGGTAAGGTT
16862 AGTCCTGACTTTGAAAGAC
1 AGTCCTGACTTTGAAAGAC
* *
16881 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TTTGA-AA-GAC
*
16905 AGTCCTGACTTTGAAATAC
1 AGTCCTGACTTTGAAAGAC
*
16924 AGTCTTGAC
1 AGTCCTGAC
16933 CAGAAGAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 16 0.39
20 3 0.07
21 5 0.12
22 5 0.12
23 3 0.07
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (19 bp):
AGTCCTGACTTTGAAAGAC
Left flanking sequence: Indices 16362 -- 16861
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTATTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTT
Right flanking sequence: Indices 16933 -- 17432
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAATC
AAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAA
ATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCA
TTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCAC
TCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAAAGCCCTCTTGTGAAGAGGG
CTTTGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTTTCAGTGCTCATGACGTGACGGGA
AGCCAAAGCGAAGCATTCAAAGCTTTTGGTTGTTTCAGGACATCA
Found at i:16894 original size:43 final size:42
Alignment explanation
Indices: 16566--17031 Score: 286
Period size: 43 Copynumber: 11.2 Consensus size: 42
16556 CCTTCCATAA
* *** *
16566 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
*
16609 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * * *
16652 TCAGTCCTGACCTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * * *****
16690 TCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* * *** * **
16733 TCAGTACTGA-TTTCAAGACAGTCTTGACCTTTCAAGAAAAA
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *** *
16774 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAA
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAG-G
*
16817 TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
16860 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* * *
16903 TCAGTCCTGACTTTGAAATACAGTCTTGACC-----AG-AAGAA
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
16941 TCAGTCCTGA---T-CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
*
16979 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTT-AAAGACAGTCTTGACCTTTTTGGTAAGG
* *
17022 TGAGTACTGA
1 TCAGTCCTGA
17032 TGACATACAA
Statistics
Matches: 346, Mismatches: 52, Indels: 50
0.77 0.12 0.11
Matches are distributed among these distances:
33 11 0.03
35 1 0.00
37 6 0.02
38 46 0.13
39 3 0.01
41 36 0.10
42 6 0.02
43 228 0.66
44 9 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (42 bp):
TCAGTCCTGACTTTAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 16066 -- 16565
ATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGAC
AGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 17032 -- 17531
TGACATACAAATGAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCT
TTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCA
ATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAA
TGACCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTC
ACGTCAGAGCAAAGCCCTCTTGTGAAGAGGGCTTTGCTCGTGACGTGACGTGATTGCACAAAGCA
CTCGCTTTTCAGTGCTCATGACGTGACGGGAAGCCAAAGCGAAGCATTCAAAGCTTTTGGTTGTT
TCAGGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCA
AAAAAAGGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTG
Found at i:16908 original size:24 final size:24
Alignment explanation
Indices: 16837--16913 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
16827 CCTTTCAAGA
* *
16837 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
* *
16861 TAGTCCTGA-C--TTTGA-AA-GA
1 CAGTCCTGACCTTTTTGATAAGGT
*
16880 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCCTGACCTTTTTGATAAGGT
16904 CAGTCCTGAC
1 CAGTCCTGAC
16914 TTTGAAATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 3 0.08
21 4 0.10
22 5 0.12
23 3 0.08
24 17 0.43
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCCTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 16337 -- 16836
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCA
GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
TTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CCTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA
AAAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGA
Right flanking sequence: Indices 16914 -- 17413
TTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGACCTTTCAATCAAGTCCTCACCTTTCAAGAAATGAGTCCTGACCTTTCCATAAGGTC
ACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAGATGCCAT
TATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACCATCCATT
CCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACGTCAGAGCAA
AGCCCTCTTGTGAAGAGGGCTTTGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTTTCAG
TGCTCATGACGTGACGGGAAGCCAAAGCGAAGCATTCAAAGCTTT
Found at i:17096 original size:22 final size:21
Alignment explanation
Indices: 17040--17099 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 21
17030 GATGACATAC
*
17040 AAATGAGTCTTGACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
** *
17061 TCA--AGTCCTCACCTTTCAA
1 AAATGAGTCCTGACCTTTCAA
17080 GAAATGAGTCCTGACCTTTC
1 -AAATGAGTCCTGACCTTTC
17100 CATAAGGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
19 14 0.48
20 1 0.03
21 1 0.03
22 13 0.45
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (21 bp):
AAATGAGTCCTGACCTTTCAA
Left flanking sequence: Indices 16540 -- 17039
TTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAA
TACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTTTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATAC
Right flanking sequence: Indices 17100 -- 17599
CATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATG
AGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGA
CCATCCATTCCCTTCTTTCAGAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGGTCACG
TCAGAGCAAAGCCCTCTTGTGAAGAGGGCTTTGCTCGTGACGTGACGTGATTGCACAAAGCACTC
GCTTTTCAGTGCTCATGACGTGACGGGAAGCCAAAGCGAAGCATTCAAAGCTTTTGGTTGTTTCA
GGACATCAAGGTTTGATGGTTGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCAAAA
AAAGGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTGACCCTGACCAATTGATGGAAAGG
AAATGATGGAAAGGATCAATTGTCATTGTATGCCATTATCCATCA
Found at i:24627 original size:28 final size:28
Alignment explanation
Indices: 24586--24668 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
24576 TGAGTACTCA
* *
24586 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
*
24614 TGTTTGTACAGTGAGTACTCATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
24642 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
24669 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 24086 -- 24585
GGGTCTTCCTTTCTCTTTCTCTTATTCGGTTAGGTAGGGTCTCGGTCGGGGGTGACTTTACGGTC
TCATACTTGATTCACGATCCTTGCAGCTAATCCCCCATGTGCGGGACCTTAACCGTGGTGCTCTT
CTACAGCTTCTTCTACATAGGCTCCTCCACTTCCGGGGGGCCTTTCTTCTACACCCTTCTTTCTT
TGAAAAGGAGGTTCTGAAAGACCGGTATAGGTAGATTGGACCATTCTCACTGTGGCAACGTTTGT
TTTTCTCATGATAGATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGT
CAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 24669 -- 25168
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
Found at i:24830 original size:95 final size:98
Alignment explanation
Indices: 24652--24831 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
24642 TGTTTGTACA
* *
24652 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
24717 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
24751 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
24812 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
24832 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 24152 -- 24651
CATACTTGATTCACGATCCTTGCAGCTAATCCCCCATGTGCGGGACCTTAACCGTGGTGCTCTTC
TACAGCTTCTTCTACATAGGCTCCTCCACTTCCGGGGGGCCTTTCTTCTACACCCTTCTTTCTTT
GAAAAGGAGGTTCTGAAAGACCGGTATAGGTAGATTGGACCATTCTCACTGTGGCAACGTTTGTT
TTTCTCATGATAGATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTC
AGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACT
AATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACA
Right flanking sequence: Indices 24832 -- 25331
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTC
AGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTG
ACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAAT
Found at i:24861 original size:43 final size:43
Alignment explanation
Indices: 24814--25012 Score: 204
Period size: 43 Copynumber: 4.9 Consensus size: 43
24804 CTGACCTTTC
* * *
24814 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
24857 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* * *
24900 AATACAGTCTTGACC------AGAAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGACTGTGA
* * * *
24933 CAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
24976 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
25013 TGACATACAA
Statistics
Matches: 125, Mismatches: 19, Indels: 24
0.74 0.11 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 4 0.03
38 20 0.16
39 3 0.02
41 1 0.01
43 85 0.68
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 24314 -- 24813
GATTGGACCATTCTCACTGTGGCAACGTTTGTTTTTCTCATGATAGATCAAAGCACTCGCAACTT
CAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATT
CAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATA
CAATTTGTTTTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 25013 -- 25512
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTT
Found at i:24870 original size:19 final size:19
Alignment explanation
Indices: 24843--24913 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
24833 TGGTCAGGTT
24843 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
24862 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
24886 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
24905 AGTCTTGAC
1 AGTCCTGAC
24914 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 24343 -- 24842
TGTTTTTCTCATGATAGATCAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCA
GGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAG
CACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTTTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 24914 -- 25413
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAG
Found at i:25126 original size:19 final size:19
Alignment explanation
Indices: 25059--25131 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 19
25049 CATTCTCATT
25059 AGTCCTGACCTTTC-AG--
1 AGTCCTGACCTTTCAAGAC
*
25075 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCCTGACCTTT-C--AAG-A-C
25099 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAGAC
*
25118 AGTCTTGACCTTTC
1 AGTCCTGACCTTTC
25132 CATTTTTGGT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 12 0.26
17 1 0.02
19 14 0.30
20 3 0.07
21 3 0.07
23 1 0.02
24 12 0.26
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAGAC
Left flanking sequence: Indices 24559 -- 25058
GCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACA
GTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCA
TCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGG
TCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 25132 -- 25631
CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAAT
GAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTT
GGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTC
TTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTT
Found at i:25255 original size:43 final size:43
Alignment explanation
Indices: 25208--25321 Score: 201
Period size: 43 Copynumber: 2.7 Consensus size: 43
25198 CTGACCTTTC
* * *
25208 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
25251 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
25294 AAGACAGTCTTGACCTTTTTGATAAGGT
1 AAGACAGTCTTGACCTTTTTGATAAGGT
25322 GAGTACTAAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 24708 -- 25207
CCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAAT
TGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTC
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 25322 -- 25821
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:25264 original size:19 final size:19
Alignment explanation
Indices: 25237--25307 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
25227 TGGTCAGGTT
25237 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
25256 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
25280 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
*
25299 AGTCTTGAC
1 AGTCCTGAC
25308 CTTTTTGATA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.22
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 24737 -- 25236
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGA
TCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGT
CCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 25308 -- 25807
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCA
GGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCA
AGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAA
TGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACC
Found at i:25288 original size:24 final size:24
Alignment explanation
Indices: 25255--25321 Score: 72
Period size: 19 Copynumber: 3.0 Consensus size: 24
25245 CTGTGAAAGA
25255 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
* * *
25279 CAGTCCTGA-C--TGTGA-AA-GA
1 CAGTCTTGACCTTTTTGATAAGGT
25298 CAGTCTTGACCTTTTTGATAAGGT
1 CAGTCTTGACCTTTTTGATAAGGT
25322 GAGTACTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
19 9 0.28
20 3 0.09
21 4 0.12
22 4 0.12
23 3 0.09
24 9 0.28
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (24 bp):
CAGTCTTGACCTTTTTGATAAGGT
Left flanking sequence: Indices 24755 -- 25254
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCT
TGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
Right flanking sequence: Indices 25322 -- 25821
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Found at i:25552 original size:43 final size:42
Alignment explanation
Indices: 25505--25657 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
25495 ACCTTTCAAG
25505 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
** * * *
25548 ACAGTCTTGA-C----CAG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGATCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
*
25583 --AGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * * *
25624 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
25658 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 8 0.10
34 1 0.01
35 4 0.05
37 3 0.04
38 22 0.27
39 3 0.04
41 3 0.04
42 1 0.01
43 38 0.46
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 25005 -- 25504
AGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCT
TTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAT
TTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTA
ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 25658 -- 26157
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATA
Found at i:25763 original size:19 final size:19
Alignment explanation
Indices: 25735--25810 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
25725 CTTCCATAAT
25735 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
*
25754 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCCTGACCTTTC---AAG-A
25777 TCAGTCCTGACCTTTCAAGA
1 -CAGTCCTGACCTTTCAAGA
*
25797 CAGTCTTGACCTTT
1 CAGTCCTGACCTTT
25811 TTGGTAAGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
CAGTCCTGACCTTTCAAGA
Left flanking sequence: Indices 25235 -- 25734
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACA
GTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATT
TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 25811 -- 26310
TTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGA
AGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAA
GACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
Found at i:25781 original size:24 final size:24
Alignment explanation
Indices: 25732--25796 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
25722 GTCCTTCCAT
25732 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
25753 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
25775 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
25797 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 25232 -- 25731
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 25797 -- 26296
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACC
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
Found at i:25793 original size:43 final size:44
Alignment explanation
Indices: 25732--25850 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 44
25722 GTCCTTCCAT
25732 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGTAAG
***
25775 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGTAAG
* ** *
25819 -GTCAGTCCTGACCTTGAAATACAGTCTTGACC
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC
25851 AGAAGAATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGTAAG
Left flanking sequence: Indices 25232 -- 25731
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 25851 -- 26350
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTT
GGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGT
CTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAAT
Found at i:25816 original size:291 final size:295
Alignment explanation
Indices: 25488--26148 Score: 1075
Period size: 291 Copynumber: 2.2 Consensus size: 295
25478 TTCCATCAAA
*
25488 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
*
25553 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTT
66 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
* *
25618 TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA-AATGA-GT-C-TTG
131 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATT-
*
25678 TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATCAGTCCT
195 TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAGTCCT
25742 GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
259 GACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
25779 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAG
*
25843 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
** ** *
25908 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCC
130 GTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAG-AATGA-C-GTCC
*
25973 ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
192 ATTTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
*
26038 CTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
257 CTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* * *
26077 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
26142 CTTGACC
66 CTTGACC
26149 TTTTTGATAA
Statistics
Matches: 343, Mismatches: 16, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
291 165 0.48
292 6 0.02
294 3 0.01
297 3 0.01
298 162 0.47
299 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (295 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATGACAAGACAGAATGACGTCCATTT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 24988 -- 25487
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 26149 -- 26648
TTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGA
TAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAG
GTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTT
CCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTA
AATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGT
CCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTT
GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGA
Found at i:25902 original size:76 final size:78
Alignment explanation
Indices: 25770--25926 Score: 221
Period size: 76 Copynumber: 2.0 Consensus size: 78
25760 TGACCTTTCA
25770 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-T
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGT
*
25834 GAAATACAGTCTTGACC
62 GAAAGACAGTCTTGACC
* * *
25851 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
25914 GACAGTCTTGACC
66 GACAGTCTTGACC
25927 TTTTTGATAA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
75 2 0.03
76 50 0.70
77 2 0.03
81 17 0.24
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAA
GACAGTCTTGACC
Left flanking sequence: Indices 25270 -- 25769
TGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTG
ACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCA
Right flanking sequence: Indices 25927 -- 26426
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
TCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
AAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAG
Found at i:25922 original size:43 final size:41
Alignment explanation
Indices: 25874--25970 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 41
25864 CTGATCAGAT
* * * *
25874 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TGAAAGAC
**
25917 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
25958 AGTCTTGACCTTT
1 AGTCTTGACCTTT
25971 CCATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 19 0.40
42 1 0.02
43 28 0.58
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
Left flanking sequence: Indices 25374 -- 25873
TGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 25971 -- 26470
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCT
TGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGAC
CTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Found at i:26079 original size:24 final size:19
Alignment explanation
Indices: 26034--26108 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
26024 TTCCATCAAA
*
26034 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
26053 AGTCTTGACCTTTCCAGAAGAATC
1 AGTCTTGACCTTT-C--AAG-A-C
*
26077 AGTCCTGACCTTTCAAGAC
1 AGTCTTGACCTTTCAAGAC
26096 AGTCTTGACCTTT
1 AGTCTTGACCTTT
26109 TTGGTCAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 25 0.52
20 2 0.04
21 3 0.06
22 3 0.06
23 2 0.04
24 13 0.27
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (19 bp):
AGTCTTGACCTTTCAAGAC
Left flanking sequence: Indices 25534 -- 26033
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 26109 -- 26608
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAG
AAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGAC
CTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAG
ATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
Found at i:26124 original size:43 final size:43
Alignment explanation
Indices: 26034--26289 Score: 173
Period size: 43 Copynumber: 6.2 Consensus size: 43
26024 TTCCATCAAA
*** *
26034 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* *
26077 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** *
26120 AGTCCTGA-CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * * *
26163 AGTCCTGA-CTGTGAAATACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * *
26201 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
* * *
26239 AGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
26282 AGTACTGA
1 AGTCCTGA
26290 TGACATACAA
Statistics
Matches: 170, Mismatches: 29, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
33 11 0.06
37 3 0.02
38 20 0.12
39 3 0.02
41 1 0.01
42 2 0.01
43 128 0.75
44 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 25534 -- 26033
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 26290 -- 26789
TGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGT
CCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
AAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAA
TCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTT
GACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAG
Found at i:26147 original size:19 final size:19
Alignment explanation
Indices: 26120--26190 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
26110 TGGTCAGGTT
26120 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
26139 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
26163 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
26182 AGTCTTGAC
1 AGTCCTGAC
26191 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 25620 -- 26119
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTC
AGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTC
AAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 26191 -- 26690
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGA
CAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACC
TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCA
AGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGG
Found at i:26149 original size:341 final size:336
Alignment explanation
Indices: 25732--26757 Score: 1172
Period size: 341 Copynumber: 3.0 Consensus size: 336
25722 GTCCTTCCAT
* * *
25732 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAGAATCAGTCCTGACCTTTCAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTAAGTCAG--TAAGTCCTGACCTTTCAAG
25796 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAATACAGTCTTGACCAGAAGAATC
64 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAGTCTTGACCAGAAGAATC
*
25860 AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
128 AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGA
25925 CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAG
193 CCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAG
25990 TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAG
258 TACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AAAAGTCCTGACCTTTCAAGACAG
26055 TCTTGACCTTTCCAGAAG
322 TCTTGACCTTT--A-AAG
** * **
26073 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA-CTGTGAAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTAAGTCA-GTAAGTCCTGACCT-TTCAAG
*
26137 ACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCA
64 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCA
26202 GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
129 GTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGAC
* * * * *
26267 CTTTTTGATAAGGTGAGTACTGATGACATACAA-ATGAGTCTTGACCTTT-CA-----AGACA-G
194 CTTTTTGATAAGGTCAGTACTGAT----TTCAAGA-CAGTCTTGACCTTTCCATTTTTGGTCAGG
** * ** * * * * *
26324 T-CCTCACCT--T--CCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGA
254 TGAGT-A-CTAATGGCAT-ACAATTGCA-ATTG-GTCCTGTCC-TTCCA-TA-AA--AGTCCTGA
*
26384 CCTTTCAAGACAGTCTTGACCTTTAAAT
309 CCTTTCAAGACAGTCTTGACCTTTAAAG
** ** * * * * * * * *
26412 TTTTGGTCAGGTGAGTACTAATGGC-ATACAATTGCAATTGGTCCTGTCCTTCCA-TCA-AAAGT
1 AATCAGTC--CTGA--CCT--T-TCAAGAC-AGT-C--TT-GACCT-T--TT-AAGTCAGTAAGT
* * *
26474 CCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTT
50 CCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTT
26539 GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
115 GACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
26604 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
180 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTT
*
26669 TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
245 TTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA-AAGTCCTGA
26734 CCTTTCAAGACAGTCTTGACCTTT
309 CCTTTCAAGACAGTCTTGACCTTT
26758 TTGGTAAGGT
Statistics
Matches: 574, Mismatches: 61, Indels: 91
0.79 0.08 0.13
Matches are distributed among these distances:
335 2 0.00
336 6 0.01
337 5 0.01
338 11 0.02
339 16 0.03
340 7 0.01
341 201 0.35
342 33 0.06
343 3 0.01
344 3 0.01
345 21 0.04
346 3 0.01
347 18 0.03
348 3 0.01
349 2 0.00
350 36 0.06
351 163 0.28
352 3 0.01
353 14 0.02
354 11 0.02
355 5 0.01
356 6 0.01
357 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (336 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTAAGTCAGTAAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGT
CCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCT
TTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTAC
TAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAAAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTAAAG
Left flanking sequence: Indices 25232 -- 25731
AGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 26758 -- 27257
TTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
AGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCA
GTCCTGATCTTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAAGACAGTCTT
AACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTAC
TAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATG
GCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGG
TCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTC
Found at i:26221 original size:298 final size:294
Alignment explanation
Indices: 25488--26270 Score: 870
Period size: 298 Copynumber: 2.6 Consensus size: 294
25478 TTCCATCAAA
* *
25488 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAATACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAG
* ** *
25552 TCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
65 TCTTGACCAGAAGAATCAGTCCTGATCAAATAGTCTTGATC---TCAGTAAGATCAGTCCTGAC-
* * * ** *
25617 TTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA---TGACATACA--AATGA---GT
126 -T-AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGTCTTGACCTTT
* *
25674 -C-TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCA
189 CCATT-TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAA
25737 GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
253 GTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
*
25779 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGT
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
* ** * *
25844 CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTG
66 CTTGACCAGAAGAATCAGTCCTGATCAAATAGTCTTGATC---TCAGTAAGATCAGTCCTGAC--
*
25909 TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGACAGTCTTGACCTTTC
126 T-AAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGTCTTGACCTTTC
25972 CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA-AAG
190 CATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT-AATAAG
*
26036 TCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATC
254 TCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
* *
26077 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGA-CTGTGAAAGACAG
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAGACAG
* * *
26141 TCTTGACCTTTTTGATA-AGGTCAGTCCTGACTGTGAAATACAGTCTTGA-C-CAG-AAGAATCA
65 TCTTGACC----AGA-AGA-ATCAGTCCTGA---TCAAAT--AGTCTTGATCTCAGTAAG-ATCA
* * * * * *
26202 GTCCTGA-T-CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTG
118 GTCCTGACTAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGTCTTG
26265 ACCTTT
183 ACCTTT
26271 TTGATAAGGT
Statistics
Matches: 435, Mismatches: 31, Indels: 43
0.85 0.06 0.08
Matches are distributed among these distances:
291 163 0.37
292 6 0.01
293 1 0.00
294 3 0.01
297 3 0.01
298 193 0.44
299 7 0.02
300 19 0.04
302 6 0.01
303 21 0.05
306 4 0.01
307 1 0.00
308 8 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (294 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAAGACAGT
CTTGACCAGAAGAATCAGTCCTGATCAAATAGTCTTGATCTCAGTAAGATCAGTCCTGACTAAAG
ACAGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGACAGTCTTGACCTTTCCATTTT
TGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATAAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTCAAGAAGAATC
Left flanking sequence: Indices 24988 -- 25487
ACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATT
CTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 26271 -- 26770
TTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCC
TGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCA
TCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAT
ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
Found at i:26659 original size:41 final size:43
Alignment explanation
Indices: 26566--26662 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
26556 CTGATCAGAT
* * * *
26566 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
*
26609 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
26650 AGTCTTGACCTTT
1 AGTCTTGACCTTT
26663 CCATTTTTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 18 0.37
42 3 0.06
43 28 0.57
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (43 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
Left flanking sequence: Indices 26066 -- 26565
CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTG
TGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTC
CTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTG
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 26663 -- 27162
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTAT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTC
CAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTCTTGACCTTTTTGG
TCAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATG
GAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGC
ATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAA
Found at i:26790 original size:43 final size:43
Alignment explanation
Indices: 26724--26895 Score: 134
Period size: 43 Copynumber: 4.2 Consensus size: 43
26714 CCTTCCATAA
*
26724 TCAGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* * * *
26767 TCAGTCCTGACTTTGAAATACAGTATTGACC-----AG-AAGAA
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAG-G
* * *
26805 TCAGTCCTGA---T--CAGATAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
26843 TTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
* *
26886 TGAGTACTGA
1 TCAGTCCTGA
26896 TGACATACAA
Statistics
Matches: 97, Mismatches: 19, Indels: 26
0.68 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 3 0.03
38 21 0.22
39 3 0.03
41 1 0.01
42 4 0.04
43 54 0.56
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGGTAAGG
Left flanking sequence: Indices 26224 -- 26723
CTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTG
ATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAG
TCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGT
CAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTT
CAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGA
ATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCT
TGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 26896 -- 27395
TGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGAT
CTTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTT
TGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCA
TTTTGTTGTCAAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGT
TTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGA
CTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
AGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
Found at i:26837 original size:255 final size:255
Alignment explanation
Indices: 26386--26896 Score: 925
Period size: 255 Copynumber: 2.0 Consensus size: 255
26376 AGTCCTGACC
26386 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
* *
26451 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAG
*
26516 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
26581 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
196 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
**
26641 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
* *
26706 GGTCCTGTCCTTCCAT-AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
66 GGTCCTGTCCTTCCATCAA-AAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCA
*
26770 GTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
130 GTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTT
*
26835 TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
195 TGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
26896 T
1 T
26897 GACATACAAA
Statistics
Matches: 246, Mismatches: 9, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
254 2 0.01
255 244 0.99
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (255 bp):
TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 25886 -- 26385
TTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACT
TTTCCATAATGAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACC
Right flanking sequence: Indices 26897 -- 27396
GACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATC
TTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTT
GATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
TTTGTTGTCAAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTT
TGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
TTTAAGAAGAAGAAGTTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTA
GTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCT
Found at i:27017 original size:41 final size:41
Alignment explanation
Indices: 26962--27041 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
26952 AGTCCTGATC
* * * *
26962 TTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTA
1 TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTTA
27003 TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACT
1 TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACT
27042 CATTGTTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (41 bp):
TTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTTA
Left flanking sequence: Indices 26462 -- 26961
TCCATCAAAAGTCCTGACCTTTCAAGACAGTATTGACCTTTTTGGTCAGGTTAGTCCTGACTGTG
AAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAG
TCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATA
CAGTATTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGA
CCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATC
Right flanking sequence: Indices 27042 -- 27541
CATTGTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGA
GTACTAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACT
AATGGCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAG
TTCTGATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCT
TGACCTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAG
AGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCT
GACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCAT
ACAATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAG
Found at i:27099 original size:28 final size:29
Alignment explanation
Indices: 27056--27179 Score: 184
Period size: 28 Copynumber: 4.3 Consensus size: 29
27046 GTTGATGGAA
27056 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
27084 AATGGCATTTTG-TTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
27112 AATGGCATCTCATT-TTTGGTCAAGTGAGTACT
1 AATGGCAT-T--TTGTTT-GTCAAGTGAGTACT
27144 AATGGCA-TTTGTTTGTCAAGTGAGTACT
1 AATGGCATTTTGTTTGTCAAGTGAGTACT
27172 AATGGCAT
1 AATGGCAT
27180 ACAATTGTCA
Statistics
Matches: 88, Mismatches: 0, Indels: 15
0.85 0.00 0.15
Matches are distributed among these distances:
28 54 0.61
29 8 0.09
30 1 0.01
31 4 0.05
32 21 0.24
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (29 bp):
AATGGCATTTTGTTTGTCAAGTGAGTACT
Left flanking sequence: Indices 26556 -- 27055
CTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTT
TTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTT
GACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGAT
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGG
AAAATCAGTCCTGATCTTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAAGA
CAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAA
Right flanking sequence: Indices 27180 -- 27679
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGAC
AATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTT
GTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCA
Found at i:27145 original size:60 final size:61
Alignment explanation
Indices: 27061--27179 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 61
27051 TGGAAAATGG
*
27061 CATTTGTTTGTCAAGTGAGTACTAATGGCATTT-TGTTGTCAAGTGAGTACTAATGGCATCT
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGT-TTGTCAAGTGAGTACTAATGGCATCT
27122 CATTT-TTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
1 CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCAT
27180 ACAATTGTCA
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
60 50 0.89
61 6 0.11
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.39
Consensus pattern (61 bp):
CATTTGTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATCT
Left flanking sequence: Indices 26561 -- 27060
CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGA
TAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGG
CATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCAGAT
AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
TGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAAT
CAGTCCTGATCTTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAAGACAGTC
TTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGG
Right flanking sequence: Indices 27180 -- 27679
ACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATC
TTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGAC
AATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTT
GTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCA
Found at i:27297 original size:43 final size:43
Alignment explanation
Indices: 27249--27330 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
27239 CTGATCTTTC
* * *
27249 AAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
*
27292 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTTCTGACT
1 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACT
27331 TTTCCTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTGAGTCCTGACTGTGA
Left flanking sequence: Indices 26749 -- 27248
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGTATTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTCACCTTTTAA
GGAAAATCAGTCCTGATCTTTAAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTACTTATTTAAA
GACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATTGTTGATGGAAAATGGCATTTGTTTGTCA
AGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTACTAATGGCATCTCATTTTTGGTCAAGTGA
GTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATACAATTGTCATGAGTCCTGACCTT
TCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCTGATCTTTC
Right flanking sequence: Indices 27331 -- 27830
TTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCC
TTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCC
TTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACAT
AAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGC
ACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAAT
GGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTG
AGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAA
GTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTG
Found at i:27392 original size:19 final size:16
Alignment explanation
Indices: 27351--27381 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
27341 CATTCTCATT
27351 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
27367 AGTCCTGACCTTTCA
1 AGTCCTGACCTTTCA
27382 AAAGGGTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.16, T:0.32
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 26851 -- 27350
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
ACCTTTCCAGACAGTCCTCACCTTTTAAGGAAAATCAGTCCTGATCTTTAAAGACAGTCTTGACC
TTTTTGGTCAGGTTAGTACTTATTTAAAGACAGTCTTAACCTTTTTGATAAGGTGAGTACTCATT
GTTGATGGAAAATGGCATTTGTTTGTCAAGTGAGTACTAATGGCATTTTGTTGTCAAGTGAGTAC
TAATGGCATCTCATTTTTGGTCAAGTGAGTACTAATGGCATTTGTTTGTCAAGTGAGTACTAATG
GCATACAATTGTCATGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTTTAAGAAGAAGAAGTTCT
GATCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGAC
CTTTTTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATT
Right flanking sequence: Indices 27382 -- 27881
AAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAG
TCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGAT
CCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTC
ATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTA
CAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAA
TTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGA
GTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGT
GAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCAC
Found at i:27863 original size:20 final size:20
Alignment explanation
Indices: 27838--27920 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 20
27828 TTGTACAGTG
27838 AGTACTAATGGCATATGGAA
1 AGTACTAATGGCATATGGAA
*
27858 AGTACTAATGGCATTTGTTTGCACA
1 AGTACTAATGGCATATG---G-A-A
27883 GTGAGTACTAATGGCATATGGAA
1 ---AGTACTAATGGCATATGGAA
27906 AGTACTAATGGCATA
1 AGTACTAATGGCATA
27921 CAATTGCAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
20 31 0.58
23 2 0.04
24 2 0.04
25 2 0.04
28 16 0.30
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
AGTACTAATGGCATATGGAA
Left flanking sequence: Indices 27338 -- 27837
AATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGACCTTTCAAAAGGGTCCTGTCCTTCCATA
ATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCAT
AACTTTTCCTGAAAAAGTACTAATGGCATACAATGACAATTGATCCTTTTCATTACATAAATGGT
CAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATT
TTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAGTGAGTACTAATGGCATAT
GGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTTGTTGTCAAGTGAGTACTA
ATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCA
CCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTG
Right flanking sequence: Indices 27921 -- 28420
CAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTG
ACTTTTCCATAATTAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTT
TTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAA
GTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGT
Found at i:27916 original size:48 final size:48
Alignment explanation
Indices: 27810--27919 Score: 193
Period size: 48 Copynumber: 2.3 Consensus size: 48
27800 TGGTATGGTG
* *
27810 AGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTGGTTTGCACAGTGAGTACTAATGGCATATGGAA
*
27858 AGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAA
1 AGTACTAATGGCATTGGTTTGCACAGTGAGTACTAATGGCATATGGAA
27906 AGTACTAATGGCAT
1 AGTACTAATGGCAT
27920 ACAATTGCAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.31
Consensus pattern (48 bp):
AGTACTAATGGCATTGGTTTGCACAGTGAGTACTAATGGCATATGGAA
Left flanking sequence: Indices 27310 -- 27809
TTGATAAGGTGAGTTCTGACTTTTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCCTGA
CCTTTCAAAAGGGTCCTGTCCTTCCATAATCATTCCTCAATCATTCTCATTAGTCCTGACCTTTC
CAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCATACAATGAC
AATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTT
GTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTT
GTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGA
CATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTG
Right flanking sequence: Indices 27920 -- 28419
ACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCT
GACTTTTCCATAATTAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACT
TTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
Found at i:27959 original size:19 final size:19
Alignment explanation
Indices: 27932--27981 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
27922 AATTGCAATG
*
27932 AGTCCTGACCTTTCAAGAC
1 AGTCCTGACCTTTCAAAAC
* *
27951 AGTCTTGACCTTTCAAAAG
1 AGTCCTGACCTTTCAAAAC
27970 AGTCCTGACCTT
1 AGTCCTGACCTT
27982 CCTGACTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (19 bp):
AGTCCTGACCTTTCAAAAC
Left flanking sequence: Indices 27432 -- 27931
GACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCAT
ACAATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGT
CCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAAT
GGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAA
GTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACC
TTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGAC
ATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGA
GTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 27982 -- 28481
CCTGACTTTTCCATAATTAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTG
ACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
Found at i:28054 original size:43 final size:44
Alignment explanation
Indices: 27932--28095 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 44
27922 AATTGCAATG
27932 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTCAA-AAGAGTCC
1 AGTCCTGACCTTTCCAAGACAGTCTTGACCTTTCAAGAAGAGT-C
* * * * *
27975 TGACCTTCCTGACTTTTCCATA-ATTAGTCCTGACCTTTCAAGAAGAATC
1 --A--GTCCTGACCTTTCCA-AGA-CAGTCTTGACCTTTCAAGAAGAGTC
***
28024 AGTCCTGACCTTT-CAAGACAGTCTTGACCTTTTTGGTAAG-GTC
1 AGTCCTGACCTTTCCAAGACAGTCTTGACCTTTCAAG-AAGAGTC
**
28067 AGTCCTGA-CTTTGAAAGACAGTCTTGACC
1 AGTCCTGACCTTTCCAAGACAGTCTTGACC
28096 AGAAGAATCA
Statistics
Matches: 96, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 4 0.04
43 39 0.41
44 6 0.06
45 11 0.11
47 11 0.11
48 3 0.03
49 17 0.18
50 5 0.05
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (44 bp):
AGTCCTGACCTTTCCAAGACAGTCTTGACCTTTCAAGAAGAGTC
Left flanking sequence: Indices 27432 -- 27931
GACCTTTCCAGAGAGTCCTGACCTTTTCCTTTCCATAACTTTTCCTGAAAAAGTACTAATGGCAT
ACAATGACAATTGATCCTTTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGT
CCTTTTTTGTTATTCATGTGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAAT
GGCATTTTGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAA
GTGAGAGACATACAATTTGTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACC
TTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGAC
ATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGA
GTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATG
Right flanking sequence: Indices 28096 -- 28595
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGAC
AGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTG
GTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGT
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGC
Found at i:28147 original size:76 final size:78
Alignment explanation
Indices: 28015--28171 Score: 246
Period size: 76 Copynumber: 2.0 Consensus size: 78
28005 TGACCTTTCA
28015 AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
1 AGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTG
28080 AAAGACAGTCTTGACC
63 AAAGACAGTCTTGACC
* * *
28096 AGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAA
1 AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
28159 GACAGTCTTGACC
66 GACAGTCTTGACC
28172 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
76 54 0.74
77 2 0.03
81 17 0.23
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
AGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAA
GACAGTCTTGACC
Left flanking sequence: Indices 27515 -- 28014
TTTCATTACATAAATGGTCAGGGTCAGCATGAATGGCATACAATTGTCCTTTTTTGTTATTCATG
TGAGAGTCAGCACTCATTTTGATGGAAAATGGCATCTTCTTGGTAATGGCATTTTGTTTGTACAG
TGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGTCAAGTGAGAGACATACAATTT
GTTGTCAAGTGAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGAAGAATGAGTC
CTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAG
TACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGA
AAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAG
AGTCCTGACCTTCCTGACTTTTCCATAATTAGTCCTGACCTTTCA
Right flanking sequence: Indices 28172 -- 28671
TTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCT
TCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGT
CTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGT
CCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGA
CCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATC
AAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
Found at i:28284 original size:24 final size:24
Alignment explanation
Indices: 28252--28297 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
28242 ACTTTTCCAT
28252 AATGAGTCCTGACCTTTCAAGAAG
1 AATGAGTCCTGACCTTTCAAGAAG
28276 AATGAGTCCTGACCTTTCAAGA
1 AATGAGTCCTGACCTTTCAAGA
28298 CAGTCTTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (24 bp):
AATGAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 27752 -- 28251
TGACCTTTCAAGAAGAATGAGTCCTGACCGGAAAGTCCTCACCTTTCTTGGTATGGTGAGTACTA
ATGACATTGGTTTGTACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATTTGTTTGCAC
AGTGAGTACTAATGGCATATGGAAAGTACTAATGGCATACAATTGCAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCTGACTTTTCCATAATTAGTCCTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT
TTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATG
AGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCAT
Right flanking sequence: Indices 28298 -- 28797
CAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACT
GTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGT
TAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTC
TTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAA
ATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTC
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
Found at i:28562 original size:41 final size:43
Alignment explanation
Indices: 28470--28566 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
28460 CTGATCAGAT
* * * *
28470 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
* *
28513 AGTATTGACCTTTTTGATAAGGTCAGTACTGA-TTT-CAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
28554 AGTCTTGACCTTT
1 AGTCTTGACCTTT
28567 CCATTTTTGG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 17 0.36
42 3 0.06
43 27 0.57
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (43 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGACTTTGAAAGAC
Left flanking sequence: Indices 27970 -- 28469
AGTCCTGACCTTCCTGACTTTTCCATAATTAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAA
GAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGT
CTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTC
CTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTG
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 28567 -- 29066
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCT
TTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTC
TGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAA
TGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGT
Found at i:28694 original size:43 final size:42
Alignment explanation
Indices: 28647--28799 Score: 119
Period size: 43 Copynumber: 3.8 Consensus size: 42
28637 ACCTTTCAAG
28647 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACT-TGAAAT
* * * *
28690 ACAGTCTTGACC-----AG-AAGAATCAGTCCTGA--TCAGAT
1 ACAGTCTTGACCTTTTTGGTAAG-GTCAGTCCTGACTTGAAAT
* * *
28725 --AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGAC-TTGAAAT
* * *
28766 ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
28800 TGACATACAA
Statistics
Matches: 83, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
33 9 0.11
35 4 0.05
37 3 0.04
38 21 0.25
39 3 0.04
41 3 0.04
43 40 0.48
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
ACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTTGAAAT
Left flanking sequence: Indices 28147 -- 28646
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGACCTTTCAAGACAGTCCTCACCTTCCTGACTTTTCCATAATGAGTCCTGACCTTTCAAGAAGA
ATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCA
TACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
TTGGTCAGGTTAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAG
TCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTC
AGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAA
TTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAG
Right flanking sequence: Indices 28800 -- 29299
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAG
AGTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCC
AGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAG
GTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCA
AAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAG
Found at i:28741 original size:255 final size:255
Alignment explanation
Indices: 28290--28800 Score: 968
Period size: 255 Copynumber: 2.0 Consensus size: 255
28280 AGTCCTGACC
28290 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
* *
28355 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
28420 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
28485 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
196 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
**
28545 TTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
1 TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
28610 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
66 GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
28675 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
131 TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
* *
28740 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
196 GGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
28800 T
1 T
28801 GACATACAAA
Statistics
Matches: 250, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 250 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (255 bp):
TTTCAAGACAGTCTTGACCTTTAAATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATT
GGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAG
TCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTT
GGTAAGGTTAGTCCTGACTTTGAAAGACAGTATTGACCTTTTTGATAAGGTCAGTACTGA
Left flanking sequence: Indices 27790 -- 28289
TCACCTTTCTTGGTATGGTGAGTACTAATGACATTGGTTTGTACAGTGAGTACTAATGGCATATG
GAAAGTACTAATGGCATTTGTTTGCACAGTGAGTACTAATGGCATATGGAAAGTACTAATGGCAT
ACAATTGCAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAAAGAGTCCTGACCTTCCT
GACTTTTCCATAATTAGTCCTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATC
AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGAT
AAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTTCAAGACAGTCCTCACCTTCCTGACT
TTTCCATAATGAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACC
Right flanking sequence: Indices 28801 -- 29300
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGA
GTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCA
GGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAA
AAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGG
Found at i:29179 original size:43 final size:43
Alignment explanation
Indices: 29115--30260 Score: 377
Period size: 43 Copynumber: 27.2 Consensus size: 43
29105 TTGTATGTCA
* * * *
29115 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* *
29158 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
** * * * *
29196 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
*
29234 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
* ** * ***
29277 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* * * *
29318 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* *
29361 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
** * * * *
29403 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
*
29442 TCAGGACTAACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
* ** * * * * * * *
29485 TCAGGACTGA--TTATGGAAGGACAGGACCA-ATTG-CAATTGTATG
1 TCAGGACTAACCTTA-CCAA--AAAGGTCAAGACTGTC-TTTGAAAG
* * * * * * *
29528 CCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 ---TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* * *
29574 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
29617 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
** *** *
29660 TCAGGACTGATTCTT-CTTGAAAGGTCAATACTGTC-TTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
** *** *
29703 TCAGGACTGATTCTT-CTTGAAAGGTCAAGA----CTATGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
* ** * * *
29743 TCAGGACTAA--TGAGAATGATTGAGGAATGACCATCAAGAC--TCATTTGTATG
1 TCAGGACTAACCTTACCA--A---A--AA-G---GTCAAGACTGTC-TTTGAAAG
* * * *
29794 TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 ---TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* *
29840 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
** * * * *
29878 TCAGGACTGATTCTT--C----TGGTCAATACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* * * * *
29916 TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
29959 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
** ***
30002 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
* ** * ***
30045 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC-TTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
* * ***** * *
30086 TCAGTACTGACCTTTTTTGAAAGATCAAGACTATC-TTGAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
** * * * * *
30128 ATCAGGACTGATTCTT--C----TGGTCAATACTGTATTTCACAG
1 -TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
*
30167 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TGGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
** ***
30210 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTC-TTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTTGAAA-G
30253 TCAGGACT
1 TCAGGACT
30261 CATTCTTCTT
Statistics
Matches: 834, Mismatches: 180, Indels: 178
0.70 0.15 0.15
Matches are distributed among these distances:
33 20 0.02
35 2 0.00
37 18 0.02
38 67 0.08
39 26 0.03
40 15 0.02
41 66 0.08
42 38 0.05
43 484 0.58
44 29 0.03
45 15 0.02
46 19 0.02
47 4 0.00
48 4 0.00
49 8 0.01
51 3 0.00
52 4 0.00
54 9 0.01
56 3 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTTGAAAG
Left flanking sequence: Indices 28615 -- 29114
TGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAA
GGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAA
ATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTCACC
TTTCTAGAATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAA
TGACAACCTTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAG
GACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 30261 -- 30760
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTA
Found at i:29263 original size:76 final size:79
Alignment explanation
Indices: 29136--29368 Score: 233
Period size: 76 Copynumber: 2.9 Consensus size: 79
29126 CTTATCAAAA
* *
29136 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGT-TTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
29198 AGGACTGATTCTTC-T
64 AGGACTGATTCTTCTT
*
29213 -GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGT-TTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
29277 TCAGGACTGATTTTTCTT
62 TCAGGACTGATTCTTCTT
* * * * * * *
29295 GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
1 ---AGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TT-GAA
29360 GTCAGGACT
61 GTCAGGACT
29369 AACCTTACCA
Statistics
Matches: 132, Mismatches: 11, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
75 1 0.01
76 50 0.38
77 2 0.02
79 1 0.01
81 15 0.11
82 1 0.01
84 43 0.33
85 7 0.05
86 12 0.09
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (79 bp):
AGGTCAAGACTGTTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCAG
GACTGATTCTTCTT
Left flanking sequence: Indices 28636 -- 29135
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCC
TTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGT
CAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGA
AGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 29369 -- 29868
AACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAATACTGT
CTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
Found at i:29277 original size:19 final size:19
Alignment explanation
Indices: 29253--29317 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
29243 ACCTTACCAA
29253 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
29272 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
29296 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
29315 AAA
1 AAA
29318 TCAGTACTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 21 0.54
24 18 0.46
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 28753 -- 29252
CTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCT
TGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGA
ATTTATCCTTTCCTTTATCAAGAATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACC
TTTCCTTTCTGGTCAGGGTGAGCACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCT
GGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 29318 -- 29817
TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGA
CTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAATACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Found at i:29447 original size:81 final size:81
Alignment explanation
Indices: 29340--29496 Score: 260
Period size: 81 Copynumber: 1.9 Consensus size: 81
29330 TTATCAAAAA
* *
29340 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTTGAAAGAT
29405 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * *
29421 GGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTTGAAAGAT
29486 CAGGACTGATT
66 CAGGACTGATT
29497 ATGGAAGGAC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (81 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 28840 -- 29339
CTCATTAGTCCTGACCTTTCCAGAGAGTCCTCACCTTTCTAGAATTTATCCTTTCCTTTATCAAG
AATTGCAATTTCTCCTGTCTTTTCCAGGCATACAATGACAACCTTTCCTTTCTGGTCAGGGTGAG
CACTTTTCAGGATTTGTCTGACCAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGA
GGAAAAGTCAGAACTCACCTTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
ACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTT
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 29497 -- 29996
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAATACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTAT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
Found at i:29624 original size:19 final size:19
Alignment explanation
Indices: 29554--29624 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
29544 TATCAAAAAG
* *
29554 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
29573 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
29596 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
29616 GTCAGGACT
1 GTCAAGACT
29625 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 29054 -- 29553
TTACCAAAAAGGTCAGGACTCTCTGGAAAGGTCAGGAAGGTCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 29625 -- 30124
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAATA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
ATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
Found at i:29660 original size:19 final size:20
Alignment explanation
Indices: 29636--29734 Score: 85
Period size: 24 Copynumber: 4.7 Consensus size: 20
29626 ACCTTACCAA
29636 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
29655 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG----TTCTTG
*
29679 AAAGGTCAATACTG-TCTTG
1 AAAGGTCAAGACTGTTCTTG
*
29698 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG----TTCTTG
29722 AAAGGTCAAGACT
1 AAAGGTCAAGACT
29735 ATGAAAGGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
19 30 0.47
24 34 0.53
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (20 bp):
AAAGGTCAAGACTGTTCTTG
Left flanking sequence: Indices 29136 -- 29635
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 29735 -- 30234
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTGGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
Found at i:29679 original size:24 final size:24
Alignment explanation
Indices: 29650--29734 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 24
29640 GTCAAGACTG
29650 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
29674 TCTTGAAAGGTCA--A-T-A--CT
1 TCTTGAAAGGTCAGGACTGATTCT
29692 GTCTTGAAAGGTCAGGACTGATTCT
1 -TCTTGAAAGGTCAGGACTGATTCT
*
29717 TCTTGAAAGGTCAAGACT
1 TCTTGAAAGGTCAGGACT
29735 ATGAAAGGTC
Statistics
Matches: 53, Mismatches: 1, Indels: 14
0.78 0.01 0.21
Matches are distributed among these distances:
18 2 0.04
19 13 0.25
20 1 0.02
21 2 0.04
22 2 0.04
23 1 0.02
24 30 0.57
25 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 29150 -- 29649
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGA
CTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 29735 -- 30234
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGA
AAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAG
GTCAAGACTGTCTGGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
Found at i:29741 original size:16 final size:16
Alignment explanation
Indices: 29720--29751 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
29710 TGATTCTTCT
29720 TGAAAGGTCAAGACTA
1 TGAAAGGTCAAGACTA
*
29736 TGAAAGGTCAGGACTA
1 TGAAAGGTCAAGACTA
29752 ATGAGAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTA
Left flanking sequence: Indices 29220 -- 29719
ACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGAT
TCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 29752 -- 30251
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTC
TTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTGGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAG
Found at i:30002 original size:19 final size:19
Alignment explanation
Indices: 29978--30085 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
29968 ACCTTACCAA
29978 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
29997 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
30021 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
30040 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
30064 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
30083 AAA
1 AAA
30086 TCAGTACTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 39 0.52
24 36 0.48
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 29478 -- 29977
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 30086 -- 30585
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCA
ATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAG
GACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGA
CAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAAT
GCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACC
ATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
Found at i:30021 original size:24 final size:23
Alignment explanation
Indices: 29978--30077 Score: 108
Period size: 24 Copynumber: 4.6 Consensus size: 23
29968 ACCTTACCAA
29978 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
29997 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
30021 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
30040 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGA-TTTTCTTG
30064 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
30078 TCTTGAAATC
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
19 31 0.46
24 36 0.54
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTTTCTTG
Left flanking sequence: Indices 29478 -- 29977
TGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 30078 -- 30577
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCT
TCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTGGAAA
GGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
AAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAG
TACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGAC
Found at i:30210 original size:19 final size:19
Alignment explanation
Indices: 30186--30260 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
30176 ACCTTACCAA
*
30186 AAAGGTCAAGACTGTCTGG
1 AAAGGTCAAGACTGTCTTG
*
30205 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
30229 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
30248 AAAGGTCAGGACT
1 AAAGGTCAAGACT
30261 CATTCTTCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
19 30 0.64
24 17 0.36
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 29686 -- 30185
AATACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 30261 -- 30760
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGG
TCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCAC
CATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTA
Found at i:30236 original size:24 final size:24
Alignment explanation
Indices: 30204--30284 Score: 109
Period size: 24 Copynumber: 3.6 Consensus size: 24
30194 AGACTGTCTG
30204 GAAAGGTCAGGACTGATTCTTCTT
1 GAAAGGTCAGGACTGATTCTTCTT
*
30228 GAAAGGTCAAGACTG-----TCTT
1 GAAAGGTCAGGACTGATTCTTCTT
*
30247 GAAAGGTCAGGACTCATTCTTCTT
1 GAAAGGTCAGGACTGATTCTTCTT
30271 GAAAGGTCAGGACT
1 GAAAGGTCAGGACT
30285 CATTGCAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 17 0.35
24 32 0.65
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (24 bp):
GAAAGGTCAGGACTGATTCTTCTT
Left flanking sequence: Indices 29704 -- 30203
CAGGACTGATTCTTCTTGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AATACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTA
TTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTG
Right flanking sequence: Indices 30285 -- 30784
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATAC
CAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCA
AAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAG
GAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAAT
TGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATT
Found at i:30463 original size:28 final size:28
Alignment explanation
Indices: 30296--30453 Score: 291
Period size: 28 Copynumber: 5.6 Consensus size: 28
30286 ATTGCAATTC
30296 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
30324 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
30352 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
30380 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
30408 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
*
30436 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
30454 CATACCAACA
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
27 2 0.02
28 126 0.98
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 29796 -- 30295
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAA
AGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTCTTTCACAGTCAGGACTGA
CCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTGGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 30454 -- 30953
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTC
CGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTC
ACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAAT
GCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGT
GCTCACCATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGAT
GCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGAGAA
Found at i:30635 original size:19 final size:17
Alignment explanation
Indices: 30611--30658 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
30601 ACCATACCAA
*
30611 AAAGGTCAGGACTTGATTG
1 AAAGGTCAGGACTT--CTG
*
30630 AAAGGTCAAGAC-TCTG
1 AAAGGTCAGGACTTCTG
30646 AAAGGTCAGGACT
1 AAAGGTCAGGACT
30659 AATGAGAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 13 0.52
18 1 0.04
19 11 0.44
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (17 bp):
AAAGGTCAGGACTTCTG
Left flanking sequence: Indices 30111 -- 30610
CAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTA
ACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTA
GTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
TGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
AATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATT
ATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
Right flanking sequence: Indices 30659 -- 31158
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAA
AAAGATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTA
CTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATA
CCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCC
ATCAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGG
CATACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAG
TGACCTTCAGTCTCATTAACGGAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGG
ACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAT
Found at i:30663 original size:113 final size:113
Alignment explanation
Indices: 30520--30727 Score: 416
Period size: 113 Copynumber: 1.8 Consensus size: 113
30510 ACTACTTTCC
30520 GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
1 GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
30585 TATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAA
66 TATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAA
30633 GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
1 GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
30698 TATGTCATCAGTACTCACCATACCAAAAAG
66 TATGTCATCAGTACTCACCATACCAAAAAG
30728 ATGAAGACTA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 95 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (113 bp):
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAA
Left flanking sequence: Indices 30020 -- 30519
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAA
ATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AATACTGTATTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTGGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCA
GGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTG
ACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCAC
CATACCAAAACAGGTGAGGACTCATTATGGACAGGACTACTTTCC
Right flanking sequence: Indices 30728 -- 31227
ATGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAA
CATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCA
ACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCATA
CAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAGTGAC
CTTCAGTCTCATTAACGGAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTC
TCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGA
AAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
Found at i:30859 original size:28 final size:28
Alignment explanation
Indices: 30749--30849 Score: 193
Period size: 28 Copynumber: 3.6 Consensus size: 28
30739 TTGCAATTGT
30749 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
30777 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
30805 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
30833 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
30850 CATACCAACA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 30249 -- 30748
AAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCAC
TTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTATGGACAG
GACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAAAGGTCAA
GACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTC
ATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGT
Right flanking sequence: Indices 30850 -- 31349
CATACCAACATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATT
ATCCATCAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATA
ATGGCATACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGT
TAAGTGACCTTCAGTCTCATTAACGGAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGT
CAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGAC
CCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAG
ACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGAC
Found at i:30899 original size:23 final size:24
Alignment explanation
Indices: 30872--30920 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
30862 AGTACTCACT
* *
30872 ATACCAA-ACAGATGCCATTTTCC
1 ATACCAAGAAAGATGCCATTATCC
30895 ATACCAAGAAAGATGCCATTATCC
1 ATACCAAGAAAGATGCCATTATCC
30919 AT
1 AT
30921 CAACCAATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (24 bp):
ATACCAAGAAAGATGCCATTATCC
Left flanking sequence: Indices 30372 -- 30871
GACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAA
ATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCATTA
TGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGGTCAGGACTTGATTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAATTGTATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACT
Right flanking sequence: Indices 30921 -- 31420
CAACCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCA
TACAATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAGTG
ACCTTCAGTCTCATTAACGGAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTT
GAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTC
TTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGAC
AATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGT
Found at i:31201 original size:16 final size:16
Alignment explanation
Indices: 31180--31210 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
31170 AGGACCCTTT
31180 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
31196 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
31211 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 30680 -- 31179
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAGATGAAGACTAATTGCAA
TTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCC
ATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATA
CCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAACCAATGCCATTAGTGT
TTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCATACAATTCCAATTGATCCT
TTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAGTGACCTTCAGTCTCATTAACG
GAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTT
Right flanking sequence: Indices 31211 -- 31710
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAA
GGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCA
GGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:31277 original size:43 final size:42
Alignment explanation
Indices: 31229--31326 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 42
31219 TGATTGAGGA
* * * *
31229 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTC-TTC
* *
31272 AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
31314 AAAGATCAGAACT
1 AAAG-TCAGAACT
31327 TCTTCTTCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.13
43 41 0.87
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTGACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 30729 -- 31228
TGAAGACTAATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCAC
TGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAAC
ATGAGTACTCACTATACCAAACAGATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAA
CCAATGCCATTAGTGTTTCATTGAAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCATAC
AATTCCAATTGATCCTTTGGTCAGCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAGTGACC
TTCAGTCTCATTAACGGAAAGGAAAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCT
CTGGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 31327 -- 31826
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATGAGTACT
CACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCAAAAAGGTCAAGACT
GTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGA
CTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
Found at i:31405 original size:28 final size:28
Alignment explanation
Indices: 31382--31501 Score: 208
Period size: 28 Copynumber: 4.3 Consensus size: 28
31372 TGACAATTGT
31382 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
31410 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
31438 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
31466 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
31494 ATGCCATT
1 ATGCCATT
31502 TTCCATCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
27 1 0.01
28 88 0.98
29 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 30882 -- 31381
GATGCCATTTTCCATACCAAGAAAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTG
AAGAGAAAGACAATTGCATTTTTGGTATGGATAATGGCATACAATTCCAATTGATCCTTTGGTCA
GCACTTTGAACGATTTGTCTGACCTGAATCAGTTAAGTGACCTTCAGTCTCATTAACGGAAAGGA
AAGGCAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAG
AATGATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 31502 -- 32001
TTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACC
TTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTT
CCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACT
ATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
Found at i:31575 original size:41 final size:41
Alignment explanation
Indices: 31516--31597 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
31506 ATCAACAATG
* * *
31516 AGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
31557 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
1 AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
31598 TCAGGACTGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (41 bp):
AGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGA
Left flanking sequence: Indices 31016 -- 31515
TTTGAACGATTTGTCTGACCTGAATCAGTTAAGTGACCTTCAGTCTCATTAACGGAAAGGAAAGG
CAATTATGGACAGGACTTGATTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAATGATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCC
ATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAATG
Right flanking sequence: Indices 31598 -- 32097
TCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGA
AAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCT
Found at i:31819 original size:19 final size:19
Alignment explanation
Indices: 31795--32040 Score: 118
Period size: 19 Copynumber: 11.7 Consensus size: 19
31785 ACCTTACCAA
31795 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
31814 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
31838 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
31857 AAA--TCAGTACTGACCTTTTTTG
1 AAAGGTCA--A--GA-CTGTCTTG
* *
31879 AAAGATCAAGACTATCTTG
1 AAAGGTCAAGACTGTCTTG
* *
31898 AAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* *
31922 AAAGGTCAAGACTGTATTT
1 AAAGGTCAAGACTGTCTTG
* * * *
31941 CAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTG-TCTT----G
31965 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
31984 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
32008 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
32027 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
32041 ATTCTTCTTG
Statistics
Matches: 176, Mismatches: 24, Indels: 54
0.69 0.09 0.21
Matches are distributed among these distances:
17 3 0.02
19 86 0.49
20 4 0.02
21 2 0.01
22 10 0.06
23 3 0.02
24 68 0.39
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 31295 -- 31794
AAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAA
GGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTTTCCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAA
GAAGTACTAACCTTACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAA
GGTGAGGACTTTCCGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 32041 -- 32540
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTT
TTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGG
ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
Found at i:31822 original size:43 final size:42
Alignment explanation
Indices: 31755--32586 Score: 455
Period size: 43 Copynumber: 19.7 Consensus size: 42
31745 TGATTCTTCT
* *
31755 GGTCAAGACTGTCTTTCAAA-GTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTT-CCAGAAA
** **
31798 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* ***
31841 GGTCAAGACTGTCTTGAAA--TCAGTACTGACCTTTTTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACC-TTCCAGAAA
* * * * **
31882 GATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* ** *
31925 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTT-CCAGAAA
* **
31968 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* **
32011 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* * * * * **
32054 GGTCAGGACTCAT-TATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAA
1 GGTCAAGACT-GTCT-T-GAAAGGTCAGG-A-CTGA--CCT-TCCAGAAA
* * * * * * * *
32103 GGTCAAGACTCAT-TTGTATGTCATCAGTACTCACCTTATCAAAAA
1 GGTCAAGACT-GTCTTGAAAG--GTCAGGACTGACCTT-CCAGAAA
* * * *
32148 GGTCAAGACTGTCTTTCACA-GTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTT-CCAGAAA
* * * *
32191 GATCAAGACTATC-TG--A--TCAGGACTGATTCTT-C----T
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* * * *
32224 GGTCAAGACTGTCTTTCACA-GTCAGGACTGACCTTATCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTT-CCAGAAA
* * *
32267 GGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTTACCAAAAA
1 GGTCAAGACTGTC-TTGAAAGGTCAGGACTGACCTT-CCAGAAA
* **
32310 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
** **
32353 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* ***
32396 GGTCAAGACTGTCTTGAAA--TCAGTACTGACCTTTTTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACC-TTCCAGAAA
* * * *
32437 GATCAAGACTATC-TG--A--TCAGGACTGATTCTT-C----T
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
* ** *
32470 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTT-CCAGAAA
* **
32513 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA-CCTTCCAGAAA
32556 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA
32587 TTATGGAAGG
Statistics
Matches: 636, Mismatches: 105, Indels: 96
0.76 0.13 0.11
Matches are distributed among these distances:
33 21 0.03
34 1 0.00
35 1 0.00
36 1 0.00
37 8 0.01
38 41 0.06
39 7 0.01
40 2 0.00
41 63 0.10
42 13 0.02
43 398 0.63
44 16 0.03
45 25 0.04
46 3 0.00
47 7 0.01
48 4 0.01
49 25 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (42 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGACCTTCCAGAAA
Left flanking sequence: Indices 31255 -- 31754
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTTCCATCAACAAT
GAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACCTTACCAAAAAGGT
CAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCCGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 32587 -- 33086
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:31841 original size:24 final size:23
Alignment explanation
Indices: 31809--32063 Score: 153
Period size: 24 Copynumber: 11.8 Consensus size: 23
31799 GTCAAGACTG
31809 TCTTGAAAGGTCAGGACTGATTTT
1 TCTTGAAAGGTCAGGACTGA-TTT
*
31833 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
31852 TCTTGAAA--TCAGTACTGACCTTT
1 TCTTGAAAGGTCAGGACTGA--TTT
* *
31875 T-TTGAAAGATCAAGACT-A---
1 TCTTGAAAGGTCAGGACTGATTT
*
31893 TCTTGAAAGATCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
*
31917 TCTTGAAAGGTCAAGACTG-TATT
1 TCTTGAAAGGTCAGGACTGAT-TT
*
31940 TC----AAGGTCAGGACTGACCTT
1 TCTTGAAAGGTCAGGACTGA-TTT
* *** *
31960 ACCAAAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
31979 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
*
32003 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
32022 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
32046 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
32064 CATTATGGAA
Statistics
Matches: 181, Mismatches: 19, Indels: 62
0.69 0.07 0.24
Matches are distributed among these distances:
17 7 0.04
18 1 0.01
19 67 0.37
20 4 0.02
22 6 0.03
23 6 0.03
24 90 0.50
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATTT
Left flanking sequence: Indices 31309 -- 31808
TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTTT
CCATCAACAATGAGTACTCACCTTATCAAAAAGGTTAAGACTGTCTTTAAAGAAGTACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTTAAAGATCAGGACTGATTTTCCTTAAAAGGTGAGGACTTTCC
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTGACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 32064 -- 32563
CATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTT
CTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGAT
CAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
Found at i:32247 original size:19 final size:19
Alignment explanation
Indices: 32225--32295 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
32215 GATTCTTCTG
*
32225 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
32244 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
32267 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
32287 GTCAGGACT
1 GTCAAGACT
32296 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 31725 -- 32224
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTT
GAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 32296 -- 32795
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
Found at i:32276 original size:24 final size:24
Alignment explanation
Indices: 32244--32320 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
32234 GTCTTTCACA
*
32244 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
32268 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
32287 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
32311 GTCAAGACTG
1 GTCAAGACTG
32321 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 31744 -- 32243
CTGATTCTTCTGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
TTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTAT
TTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTA
TGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
Right flanking sequence: Indices 32321 -- 32820
TCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
Found at i:32331 original size:19 final size:19
Alignment explanation
Indices: 32307--32414 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
32297 ACCTTACCAA
32307 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
32326 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
32350 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
32369 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
32393 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
32412 AAA
1 AAA
32415 TCAGTACTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 35 0.47
20 1 0.01
21 3 0.04
22 3 0.04
23 1 0.01
24 32 0.43
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 31807 -- 32306
TGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT
TATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 32415 -- 32914
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACT
GTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
Found at i:32352 original size:24 final size:23
Alignment explanation
Indices: 32307--32406 Score: 99
Period size: 24 Copynumber: 4.6 Consensus size: 23
32297 ACCTTACCAA
32307 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
32326 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCT-G
32350 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
* *
32369 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGATTCTTC-TG
32393 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
32407 TCTTGAAATC
Statistics
Matches: 66, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 4 0.06
22 4 0.06
23 1 0.02
24 29 0.44
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTCTTCTG
Left flanking sequence: Indices 31807 -- 32306
TGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACC
TTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT
TATGGAAAAGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 32407 -- 32906
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
Found at i:32534 original size:19 final size:19
Alignment explanation
Indices: 32510--32585 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
32500 ACCTTACCAA
32510 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
32529 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
32553 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
32572 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
32586 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 32010 -- 32509
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
AGTCAGGAAGGTGAGGACTGTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 32586 -- 33085
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:32726 original size:43 final size:43
Alignment explanation
Indices: 32663--32818 Score: 136
Period size: 43 Copynumber: 3.9 Consensus size: 43
32653 TTGTATGTCA
* * * *
32663 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* *
32706 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* * * *
32744 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTCTTTCACAG
32782 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
32819 GAAAGGTCAG
Statistics
Matches: 85, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 20 0.24
39 5 0.06
41 1 0.01
43 43 0.51
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 32163 -- 32662
TCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 32819 -- 33318
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
Found at i:33040 original size:19 final size:19
Alignment explanation
Indices: 33013--33083 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
33003 TATCAAAAAG
*
33013 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
33032 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
33055 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
33075 GTCAGGACT
1 GTCAAGACT
33084 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 32513 -- 33012
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 33084 -- 33583
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
Found at i:33060 original size:43 final size:43
Alignment explanation
Indices: 32999--33126 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
32989 ATTAGTACTC
* *
32999 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
33042 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
* *
33085 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
33127 GATTCTTCTG
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
42 5 0.06
43 75 0.94
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Left flanking sequence: Indices 32499 -- 32998
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 33127 -- 33626
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTC
Found at i:33065 original size:113 final size:116
Alignment explanation
Indices: 32820--33065 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
32810 GACTGTCTTG
*
32820 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
32884 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
32939 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
33003 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
33052 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
33066 TCTTTCAAAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 32320 -- 32819
GTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 33066 -- 33565
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAG
GTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
Found at i:33119 original size:19 final size:20
Alignment explanation
Indices: 33095--33188 Score: 79
Period size: 19 Copynumber: 4.7 Consensus size: 20
33085 ACCTTACCAA
33095 AAAGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGATCTTG
*
33114 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTGA-TCTTG
**
33134 -CTGGTCAAGACTG-TCTTG
1 AAAGGTCAAGACTGATCTTG
*
33152 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGA-TC-T-T-G
33176 AAAGGTCAAGACT
1 AAAGGTCAAGACT
33189 ATGAAAGGTC
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
17 4 0.07
19 33 0.57
21 6 0.10
22 1 0.02
23 1 0.02
24 13 0.22
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (20 bp):
AAAGGTCAAGACTGATCTTG
Left flanking sequence: Indices 32595 -- 33094
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 33189 -- 33688
ATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
Found at i:33149 original size:38 final size:38
Alignment explanation
Indices: 33098--33175 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
33088 TTACCAAAAA
33098 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
33136 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
33174 GG
1 GG
33176 AAAGGTCAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (38 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 32598 -- 33097
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
Right flanking sequence: Indices 33176 -- 33675
AAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGA
CTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
Found at i:33196 original size:16 final size:16
Alignment explanation
Indices: 33175--33205 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33165 GATTCTTCTG
33175 GAAAGGTCAAGACTAT
1 GAAAGGTCAAGACTAT
*
33191 GAAAGGTCAGGACTA
1 GAAAGGTCAAGACTA
33206 ATGAGAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.29, T:0.16
Consensus pattern (16 bp):
GAAAGGTCAAGACTAT
Left flanking sequence: Indices 32675 -- 33174
TTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTT
CTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTG
Right flanking sequence: Indices 33206 -- 33705
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCT
TGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTG
Found at i:33314 original size:43 final size:42
Alignment explanation
Indices: 33251--33420 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
33241 TTGTATGTCA
* * *
33251 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
33294 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
33332 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
33370 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
33413 TCAGGACT
1 TCAGGACT
33421 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 52 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 32751 -- 33250
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 33421 -- 33920
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Found at i:33530 original size:41 final size:43
Alignment explanation
Indices: 33484--33580 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
33474 CCAAAAATGG
* * * *
33484 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
33525 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
33568 AAAGATCAAGACT
1 AAAGGTCAAGACT
33581 ATCTGATCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
41 16 0.33
42 5 0.10
43 28 0.57
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 32984 -- 33483
ATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAA
GGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 33581 -- 34080
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACC
TTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
Found at i:33652 original size:43 final size:43
Alignment explanation
Indices: 33604--33765 Score: 265
Period size: 43 Copynumber: 3.8 Consensus size: 43
33594 TGATTCTTCT
* **
33604 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTT-TT-TTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTGAAA
33647 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
33690 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
33733 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
33766 ATGGAAGGAC
Statistics
Matches: 114, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 110 0.96
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
Left flanking sequence: Indices 33104 -- 33603
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 33766 -- 34265
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAAAA
TTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCAT
Found at i:33656 original size:24 final size:22
Alignment explanation
Indices: 33621--33765 Score: 110
Period size: 19 Copynumber: 6.7 Consensus size: 22
33611 ACTGTATTTC
*
33621 AAGGTCAGGACTGACCTTTTTTGA
1 AAGGTCAAGACTGA--TTTTTTGA
*
33645 AAGGTCAAGACTG---TCTTGA
1 AAGGTCAAGACTGATTTTTTGA
*
33664 AAGGTCAGGACTGATTCTTCTTGA
1 AAGGTCAAGACTGATT-TT-TTGA
*
33688 AAGGTCAAGACTG---TCTTGA
1 AAGGTCAAGACTGATTTTTTGA
*
33707 AAGGTCAGGACTGATTCTTCTTGA
1 AAGGTCAAGACTGATT-TT-TTGA
*
33731 AAGGTCAAGACTG---TCTTGA
1 AAGGTCAAGACTGATTTTTTGA
*
33750 AAGGTCAGGACTGATT
1 AAGGTCAAGACTGATT
33766 ATGGAAGGAC
Statistics
Matches: 97, Mismatches: 11, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
19 49 0.51
20 2 0.02
23 2 0.02
24 44 0.45
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (22 bp):
AAGGTCAAGACTGATTTTTTGA
Left flanking sequence: Indices 33121 -- 33620
AGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAG
ACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGT
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCA
AGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTC
Right flanking sequence: Indices 33766 -- 34265
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAAAA
TTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCAT
Found at i:33665 original size:19 final size:19
Alignment explanation
Indices: 33641--33762 Score: 127
Period size: 19 Copynumber: 5.9 Consensus size: 19
33631 CTGACCTTTT
33641 TTGAAAGGTCAAGACTGTC
1 TTGAAAGGTCAAGACTGTC
*
33660 TTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTG-----TC
33684 TTGAAAGGTCAAGACTGTC
1 TTGAAAGGTCAAGACTGTC
*
33703 TTGAAAGGTCAGGACTGATTCTTC
1 TTGAAAGGTCAAGACTG-----TC
33727 TTGAAAGGTCAAGACTGTC
1 TTGAAAGGTCAAGACTGTC
*
33746 TTGAAAGGTCAGGACTG
1 TTGAAAGGTCAAGACTG
33763 ATTATGGAAG
Statistics
Matches: 88, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
19 52 0.59
24 36 0.41
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (19 bp):
TTGAAAGGTCAAGACTGTC
Left flanking sequence: Indices 33141 -- 33640
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTT
Right flanking sequence: Indices 33763 -- 34262
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTA
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTA
AAATTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCAC
Found at i:33903 original size:43 final size:42
Alignment explanation
Indices: 33840--34009 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
33830 TTGTATGTCA
* * * *
33840 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
33883 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
** * * *
33921 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
33959 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
34002 TCAGGACT
1 TCAGGACT
34010 TTTGATGGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 26
0.68 0.14 0.19
Matches are distributed among these distances:
33 11 0.12
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 33340 -- 33839
GATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCAC
CTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTC
TTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAA
AGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 34010 -- 34509
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTAAAATTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCA
AAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATAAAACAAATTGTATGCC
ATTAGTGCTGACCATACCACAAATCTGAAGCACACTCGCTTCGCTTTGGCTTTCAAAGAGTGCTT
TGCTCGTGACGTTCGGGCTATAGGGCACAGGTTCAAAGGCGTCGAACAAGAAAGCAATCCATTCT
TGCTCTTCTTTGTCAAAACCCTCCCTGCGCCACAAAAGACCCAAG
Found at i:33965 original size:334 final size:339
Alignment explanation
Indices: 33273--34009 Score: 1037
Period size: 334 Copynumber: 2.2 Consensus size: 339
33263 TTATCAAAAA
* * * *
33273 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A--T
1 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
* * * ***
33333 CAGGACTGATTCTTC-T----GGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTACCAAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTGAA
*
33391 AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
129 AGGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATG
* * *
33456 CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
194 CCATTAGTACTCACCTGACCAAAAA-GG-AAGCTCAAGACTGTCATGAAATCAGTACTCACCTTA
33521 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
257 TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
33586 ATCAGGACTGATTCTTCT
322 ATCAGGACTGATTCTTCT
***** *
33604 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
33669 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
33734 GTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGC
131 GTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGTATGC
* ** **
33798 CATTAGTACTCACCTGACCATACAA-G-A-CTC-A-TTTGT-ATGTCATCAGTACTCACCTTATC
195 CATTAGTACTCACCTGACCA-AAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATC
33857 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
259 AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGAT
33922 CAGGACTGATTCTTCT
324 CAGGACTGATTCTTCT
*
33938 GGTCAAGACTGTCTTTCACA-GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
34002 TCAGGACT
65 TCAGGACT
34010 TTTGATGGAA
Statistics
Matches: 359, Mismatches: 32, Indels: 27
0.86 0.08 0.06
Matches are distributed among these distances:
331 46 0.13
332 2 0.01
334 164 0.46
335 4 0.01
336 17 0.05
337 3 0.01
338 1 0.00
340 5 0.01
341 109 0.30
342 8 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (339 bp):
GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAAGGAAGCTCAAGACTGTCATGAAATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCT
Left flanking sequence: Indices 32773 -- 33272
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTGGAAAGGTCAAGACTATGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 34010 -- 34509
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
AATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATT
AGTACTCACTGTAAAATTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCA
AAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATAAAACAAATTGTATGCC
ATTAGTGCTGACCATACCACAAATCTGAAGCACACTCGCTTCGCTTTGGCTTTCAAAGAGTGCTT
TGCTCGTGACGTTCGGGCTATAGGGCACAGGTTCAAAGGCGTCGAACAAGAAAGCAATCCATTCT
TGCTCTTCTTTGTCAAAACCCTCCCTGCGCCACAAAAGACCCAAG
Found at i:34094 original size:95 final size:99
Alignment explanation
Indices: 33978--34171 Score: 254
Period size: 99 Copynumber: 2.0 Consensus size: 99
33968 ACCTTACCAA
* *
33978 AAAGATCAAGACTGTCTTGAAAGGTCAGGA-C-TT-TTGATGGAAGGACAGGAC-CAATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTC-ATTGCAAT
** *
34039 TGTATGCCATTAGTACTCACCTGACCAA-AAATGG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATGG
* * *
34073 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAAT
1 AAAGATCAAGACTGTCTTGAAAGGTCAGGAC-CATTCTTCATGAAAGGACAGGACTCATTGCAAT
*
34138 TCAATGCCATTAGTACTCACTTGACAAACAAATG
65 TCAATGCCATTAGTACTCACCTGACAAACAAATG
34172 CCATTAGTAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
95 29 0.35
97 1 0.01
98 2 0.02
99 46 0.55
100 6 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (99 bp):
AAAGATCAAGACTGTCTTGAAAGGTCAGGACCATTCTTCATGAAAGGACAGGACTCATTGCAATT
CAATGCCATTAGTACTCACCTGACAAACAAATGG
Left flanking sequence: Indices 33478 -- 33977
AAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 34172 -- 34671
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAAAATTAAATGCCATTAGTA
CTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATT
GTATGCCATTTTCCATAAAACAAATTGTATGCCATTAGTGCTGACCATACCACAAATCTGAAGCA
CACTCGCTTCGCTTTGGCTTTCAAAGAGTGCTTTGCTCGTGACGTTCGGGCTATAGGGCACAGGT
TCAAAGGCGTCGAACAAGAAAGCAATCCATTCTTGCTCTTCTTTGTCAAAACCCTCCCTGCGCCA
CAAAAGACCCAAGCAATGCAGCTCTCATATCTGATATTGAGCATTAGCAGTCCACAAGGGTAATG
CCCGGAACAGACAAAGAAGTCACAAAAGAACTGCGGCGATCCGCGAAGAACTCCAACGGGCATCC
TTTAGGCGCCTTGATGTCCATTGTCGCAAACTTGGCTCGGAGGCG
Found at i:34116 original size:24 final size:24
Alignment explanation
Indices: 34087--34132 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
34077 GTCAAGACTG
34087 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
34111 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
34133 GCAATTCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 33587 -- 34086
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTTTTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTAC
TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAG
ACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
Right flanking sequence: Indices 34133 -- 34632
GCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTAAAATTAAATGCCATTAGTACTCACTATACCAACATGAGTACTCAC
CATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTTTCCATAAAACAAATT
GTATGCCATTAGTGCTGACCATACCACAAATCTGAAGCACACTCGCTTCGCTTTGGCTTTCAAAG
AGTGCTTTGCTCGTGACGTTCGGGCTATAGGGCACAGGTTCAAAGGCGTCGAACAAGAAAGCAAT
CCATTCTTGCTCTTCTTTGTCAAAACCCTCCCTGCGCCACAAAAGACCCAAGCAATGCAGCTCTC
ATATCTGATATTGAGCATTAGCAGTCCACAAGGGTAATGCCCGGAACAGACAAAGAAGTCACAAA
AGAACTGCGGCGATCCGCGAAGAACTCCAACGGGCATCCTTTAGG
Found at i:34172 original size:28 final size:28
Alignment explanation
Indices: 34140--34242 Score: 165
Period size: 28 Copynumber: 3.7 Consensus size: 28
34130 ATTGCAATTC
34140 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
34168 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
*
34196 AATGCCATTAGTACTCAC-TGTA-AAATTA
1 AATGCCATTAGTACTCACTTG-ACAAA-CA
34224 AATGCCATTAGTACTCACT
1 AATGCCATTAGTACTCACT
34243 ATACCAACAT
Statistics
Matches: 71, Mismatches: 1, Indels: 5
0.92 0.01 0.06
Matches are distributed among these distances:
27 5 0.07
28 66 0.93
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 33640 -- 34139
TTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTA
TGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGA
CTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACC
AATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 34243 -- 34742
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTTTCCATAAAACAAATTGTATGCCATTAGTGCTGACCATACCACAAATCTGAAGCACACTCG
CTTCGCTTTGGCTTTCAAAGAGTGCTTTGCTCGTGACGTTCGGGCTATAGGGCACAGGTTCAAAG
GCGTCGAACAAGAAAGCAATCCATTCTTGCTCTTCTTTGTCAAAACCCTCCCTGCGCCACAAAAG
ACCCAAGCAATGCAGCTCTCATATCTGATATTGAGCATTAGCAGTCCACAAGGGTAATGCCCGGA
ACAGACAAAGAAGTCACAAAAGAACTGCGGCGATCCGCGAAGAACTCCAACGGGCATCCTTTAGG
CGCCTTGATGTCCATTGTCGCAAACTTGGCTCGGAGGCGACAACCGGTAATTCAATTCCTCTCTA
TTCCCACGCGGTACCCTTCGTCCACAAATCCGGTTACATGTTGAA
Found at i:36091 original size:29 final size:31
Alignment explanation
Indices: 36054--36128 Score: 102
Period size: 30 Copynumber: 2.5 Consensus size: 31
36044 CCGAAGATAT
* *
36054 GATTCACTGACTTACCGA-AGGGAAGG-AGG
1 GATTGACTGACTGACCGATAGGGAAGGCAGG
36083 GATTGACTGACTGACCGATAGGGAAGGCAGG
1 GATTGACTGACTGACCGATAGGGAAGGCAGG
*
36114 CA-TGACTGACTGACC
1 GATTGACTGACTGACC
36129 CACTACCACT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
29 16 0.39
30 21 0.51
31 4 0.10
ACGTcount: A:0.29, C:0.20, G:0.33, T:0.17
Consensus pattern (31 bp):
GATTGACTGACTGACCGATAGGGAAGGCAGG
Left flanking sequence: Indices 35554 -- 36053
AATGGGGTTCTACCGGGAAACCATGGATTTTTGAGTTTTCGCCATTGGTTACTGGTCGAGCCACT
GGAATGGAATGAGATAAGAATCTCTGGAGATCTTTCCTCTCCGCTTACTCGTAAAAGGCTTTCCC
TCTGTAGAAGACTGATTCCGAATGGCATAATTGTCCGCTCTTTCAGATCCTCGATCTCCAAAGAA
GACTGACTCCTCCTACTCCTCCGTATCCTTGAGGATAGGATCGTCGTTGGTTTTTAAATCCGCTC
CAACGTCATGAGCAAAGCCCACAAAGCACTCGCAAAGTCACGAGCAATCTTTGCGAGTGCTTTGT
GGGCTTTGCCCGTGACTTTGCGAGTGCTTTGTGCAATCACGTTCTGATATTAGCTTAGCAAAGCC
CAAAACTCGCAACTTTGAATGCACCGAAGCCCTCGCAAAGCGAAGCGTCAGGGCTTTTTCCCTGA
AGCAATTTCGACGTTGCGAGTGCTTTGATCACACACCGAAGATAT
Right flanking sequence: Indices 36129 -- 36628
CACTACCACTAGCTTGCTTACTGACTCGGGAGCAGGAGCTCCCTCCACCTAGGAAGGCAACAACG
GATGATCGGGAGCCTTTAGGCTACTAAAGGTCAATGTCACCGAAGGGACACTCTGACCGGCATAG
CATGACTATAGCGAGCCCTGCCCATTTCCTACCTTCCGTCCCAAAGTCATCTCAACACGTTTTTT
TGCATCAATGAAATTTGCATTCCATTCTTCCACTCGTCGCTCTCCGGTCTACTATTATCCCGGAG
GGACAAAGGAAACAAGCCCTTGTTGATCCGTTGTCGGATCCTCGTAGTAGAAGTGGTTTTCCGCT
ATTTCATGCGCGGCAGCAAGCCTCGTCAGTCATCAGACCTATAGGAACACCCCGTACCACGGTTG
GAACAATACGCAGGCAAGAAGCGCTGTATGCATTTACGAATGGCCTCCCGGAGCTCATCTGGCTC
CTTATCCTTTTCCCCTTCTTTTTCTGGGGGCCGCTTCTCCCCGTG
Found at i:38419 original size:28 final size:28
Alignment explanation
Indices: 38378--38460 Score: 139
Period size: 28 Copynumber: 3.0 Consensus size: 28
38368 TGAGTACTCA
* *
38378 TGTTGGTATAGTGAGTACTAATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
*
38406 TGTTTGTACAGTGAGTACTCATGGCATT
1 TGTTTGTACAGTGAGTACTAATGGCATT
38434 TGTTTGTACAGTGAGTACTAATGGCAT
1 TGTTTGTACAGTGAGTACTAATGGCAT
38461 ACAATTGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.39
Consensus pattern (28 bp):
TGTTTGTACAGTGAGTACTAATGGCATT
Left flanking sequence: Indices 37878 -- 38377
CATTTCTCAATGAGAAGTACTTTACCGCAGCTACTATGATCATAGCAGTCCCCACTGGAATCAAA
AAAGCTACCGGCAATCAATCAGGCCCCCTCCATTTGAGTGGCCCTGGCCGTTGCTCATCCAAGAG
CTCCTCTAACCTCAGAGTCCGTCGTCCACTCCGTTCCTGCATACCATACTCGGCTTCCACCATAG
AAGCATCAGGTCAAAGGGATCACATAACCACTGGCATCGGCGCGACCCCCAGGATGTGATGAGCG
CTGAGCCCGAGCGAGGAAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGT
CAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTG
CCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCA
Right flanking sequence: Indices 38461 -- 38960
ACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAACC
TTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAA
AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAG
TCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTT
TTGATAAGGTGAGTACTGATGACATACAAAGGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
AGTCCTGACCTTTCATAGTCTTGACCGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTC
AGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCA
Found at i:38622 original size:95 final size:98
Alignment explanation
Indices: 38444--38623 Score: 251
Period size: 95 Copynumber: 1.9 Consensus size: 98
38434 TGTTTGTACA
* *
38444 GTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAA-CAGTCCTGACCTT
38509 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
65 TCAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
* * **
38543 GTGAGTACTAATGGCATACAATTGCAATTG-GTCCT-GTCCTTCCATCA-AA-AGTCCTGACCTT
1 GTGAGTACTAATGGCATACAATTGCAA-TGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTT
*
38604 TCAAGACAGTCTTGACCTTT
65 TCAAGACAGTCTTAACCTTT
38624 TTGGTCAGGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
95 31 0.42
97 2 0.03
98 7 0.10
99 31 0.42
100 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (98 bp):
GTGAGTACTAATGGCATACAATTGCAATGAGTCCTCATCCTTCAAGAAGAACAGTCCTGACCTTT
CAAGACAGTCTTAACCTTTCCATTTTTGGTCAG
Left flanking sequence: Indices 37944 -- 38443
AAGCTACCGGCAATCAATCAGGCCCCCTCCATTTGAGTGGCCCTGGCCGTTGCTCATCCAAGAGC
TCCTCTAACCTCAGAGTCCGTCGTCCACTCCGTTCCTGCATACCATACTCGGCTTCCACCATAGA
AGCATCAGGTCAAAGGGATCACATAACCACTGGCATCGGCGCGACCCCCAGGATGTGATGAGCGC
TGAGCCCGAGCGAGGAAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCAGGTC
AGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAGCACT
AATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAATTGC
CATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTACTAA
TGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACA
Right flanking sequence: Indices 38624 -- 39123
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAGGA
GTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCGACCTTT
CAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATA
TCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAA
TGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACGCACTCGCAAAGCGAAATCTTG
TACAAAGTACTCGCAAAGCGAAGTCATGTCATGAGCAAAACCATA
Found at i:38653 original size:43 final size:43
Alignment explanation
Indices: 38606--38804 Score: 186
Period size: 43 Copynumber: 4.9 Consensus size: 43
38596 CTGACCTTTC
* * *
38606 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
38649 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* * *
38692 AATACAGTCTTGACC------AGAAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGACTGTGA
* * * * * *
38725 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
38768 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
38805 TGACATACAA
Statistics
Matches: 124, Mismatches: 20, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
33 11 0.09
35 1 0.01
37 4 0.03
38 19 0.15
39 3 0.02
41 1 0.01
43 85 0.69
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 38106 -- 38605
GCATCGGCGCGACCCCCAGGATGTGATGAGCGCTGAGCCCGAGCGAGGAAAAGCACTCGCAACTT
CAAATTGCTGAAGCTGATGAAGTGATTCAGGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATT
CAGATTCTTGTTCTTCATGTGATAGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATA
CAATTTGTTGTATGGAAAATGGCATACAATTGCCATTGGGAGCACTAATGGCATTGTTTTGGTAT
GGTGAGTACTCATGTTGGTATAGTGAGTACTAATGGCATTTGTTTGTACAGTGAGTACTCATGGC
ATTTGTTTGTACAGTGAGTACTAATGGCATACAATTGCAATGAGTCTTCATCTTTCAAGAAGAAT
CAGTCCTGACCTTTCAAGACAGTCTTAACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATA
CAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTC
Right flanking sequence: Indices 38805 -- 39304
TGACATACAAAGGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCATAGT
CTTGACCGACCTTTCAAGACAGTCCTGACCGGAAGGTCACTGATTCAGGTCAGACAAATCCTGAC
AAGTGCTGACCATATCACAAATTGCAATGAGATGCCATTATCCATCAACCAATGCCATTAGTGTT
TCATTGAAGATCAATGACAATTCCAATGACCATCCATTCCCTTCTTTCAGAAAGCACGCACTCGC
AAAGCGAAATCTTGTACAAAGTACTCGCAAAGCGAAGTCATGTCATGAGCAAAACCATATTGCAC
AAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTGATTGCACAAAGCACTCGCTTTT
CAGTGCTCATGACGTCAAAGTGACGTTGGGCCGAAAGACAGAAAATCCCCAGCCTCGCCCGCCCA
GCCCAGTACTGACCCAGTGCCTCAGGATCGGGACCTTCGTCCTCC
Found at i:38662 original size:19 final size:19
Alignment explanation
Indices: 38635--38705 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
38625 TGGTCAGGTT
38635 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
38654 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
38678 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
38697 AGTCTTGAC
1 AGTCCTGAC
38706 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 38135 -- 38634
GCGCTGAGCCCGAGCGAGGAAAAGCACTCGCAACTTCAAATTGCTGAAGCTGATGAAGTGATTCA
GGTCAGAGCAAAGCCCTCTTGTTCAGAGTGCTGATTCAGATTCTTGTTCTTCATGTGATAGTCAG
CACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGAAAATGGCATACAA
TTGCCATTGGGAGCACTAATGGCATTGTTTTGGTATGGTGAGTACTCATGTTGGTATAGTGAGTA
CTAATGGCATTTGTTTGTACAGTGAGTACTCATGGCATTTGTTTGTACAGTGAGTACTAATGGCA
TACAATTGCAATGAGTCTTCATCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTAAC
CTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCA
AAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 38706 -- 39205
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAGGAGTCTTGATGGTCATTCC
TCAATCATTCTCATTAGTCCTGACCTTTCATAGTCTTGACCGACCTTTCAAGACAGTCCTGACCG
GAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATATCACAAATTGCAATGAG
ATGCCATTATCCATCAACCAATGCCATTAGTGTTTCATTGAAGATCAATGACAATTCCAATGACC
ATCCATTCCCTTCTTTCAGAAAGCACGCACTCGCAAAGCGAAATCTTGTACAAAGTACTCGCAAA
GCGAAGTCATGTCATGAGCAAAACCATATTGCACAAAGCACTCGCAAAGCGTAGGGCTTTGCTCG
TGACGTGACGTGATTGCACAAAGCACTCGCTTTTCAGTGCTCATG
Found at i:43136 original size:43 final size:43
Alignment explanation
Indices: 43075--43202 Score: 195
Period size: 43 Copynumber: 3.0 Consensus size: 43
43065 ATTAGTACTC
* *
43075 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
43118 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
* * *
43161 ACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
43203 TTTGATGGAA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 5 0.06
43 74 0.94
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
Left flanking sequence: Indices 42575 -- 43074
ATGTGCTCTAAAGGGTGCGAGTGAGCAGCGCGAACGCTGCAAGAGAGTGTACCAAGGGAAGCGTG
AGGAAAGGTGAGTGAACTTCCGCCTACTGCCGCAAGCGAGGTCACGAGCGAGGAGCGAGTGAAGT
ATACGTCACGAGCCACTAAAGAGAAGAATTTGTTGTCTTTTGGAAAGAAAAGGTCAAGTCCGATC
CGTACTCTTGCTCTGGCGGAAGAAAGATCTGATCTGTCTGTCTCATGTAAGGTCTGATTCGTACT
AGTGCTGGAGGTATTCCATTCATATCCTGTCCGTGTCCGTCCGATCCGAAAAAAGAAAAGGCGGT
AATAAATGAAAGATCCTTGTAGTTCCGATACCAGAGACGGAAAGGAACTTAAGGAAAGGAGATTA
TGGAAATGATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 43203 -- 43702
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Found at i:43140 original size:24 final size:24
Alignment explanation
Indices: 43075--43184 Score: 78
Period size: 19 Copynumber: 5.0 Consensus size: 24
43065 ATTAGTACTC
43075 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
43099 -TCTT-TC--ACA-GTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
43118 ACCTTATCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
* * *
43142 -TCTT-TC--AAA-GTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTG
* *
43161 ACCTGACCAAAAAGGTCAAGACTG
1 ACCTTATCAAAAAGGTCAAGACTG
43185 TCTTGAAAGG
Statistics
Matches: 62, Mismatches: 14, Indels: 20
0.65 0.15 0.21
Matches are distributed among these distances:
19 17 0.27
20 10 0.16
21 3 0.05
22 4 0.06
23 11 0.18
24 17 0.27
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (24 bp):
ACCTTATCAAAAAGGTCAAGACTG
Left flanking sequence: Indices 42575 -- 43074
ATGTGCTCTAAAGGGTGCGAGTGAGCAGCGCGAACGCTGCAAGAGAGTGTACCAAGGGAAGCGTG
AGGAAAGGTGAGTGAACTTCCGCCTACTGCCGCAAGCGAGGTCACGAGCGAGGAGCGAGTGAAGT
ATACGTCACGAGCCACTAAAGAGAAGAATTTGTTGTCTTTTGGAAAGAAAAGGTCAAGTCCGATC
CGTACTCTTGCTCTGGCGGAAGAAAGATCTGATCTGTCTGTCTCATGTAAGGTCTGATTCGTACT
AGTGCTGGAGGTATTCCATTCATATCCTGTCCGTGTCCGTCCGATCCGAAAAAAGAAAAGGCGGT
AATAAATGAAAGATCCTTGTAGTTCCGATACCAGAGACGGAAAGGAACTTAAGGAAAGGAGATTA
TGGAAATGATGGAAAAGAAAGGCAATTATGGAAAGGTCAGGATTCTCTGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 43185 -- 43684
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGT
Found at i:43328 original size:16 final size:16
Alignment explanation
Indices: 43307--43337 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43297 TGATTCTTCT
43307 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
43323 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
43338 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 42807 -- 43306
CTGTCTCATGTAAGGTCTGATTCGTACTAGTGCTGGAGGTATTCCATTCATATCCTGTCCGTGTC
CGTCCGATCCGAAAAAAGAAAAGGCGGTAATAAATGAAAGATCCTTGTAGTTCCGATACCAGAGA
CGGAAAGGAACTTAAGGAAAGGAGATTATGGAAATGATGGAAAAGAAAGGCAATTATGGAAAGGT
CAGGATTCTCTGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAA
ATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 43338 -- 43837
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAA
GTCAGGAAGGTGAAGACTATTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAAAAGTCAGATTCCATACAGGACTCTTTTGAAAGGTCAGG
Done.