Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 617195
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 7 of 20
Found at i:196727 original size:43 final size:44
Alignment explanation
Indices: 196675--196793 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 44
196665 GTCCTTCCAT
196675 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-AAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
***
196718 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
* ** *
196762 -GTCAGTCCTGACCTTGAAATACAGTCTTGACC
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACC
196794 AGAAGAATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGTAAG
Left flanking sequence: Indices 196175 -- 196674
CTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTT
TGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTT
TCCAGACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCC
ATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 196794 -- 197293
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGG
TCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAG
AATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTC
TTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATC
ATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
Found at i:196845 original size:76 final size:78
Alignment explanation
Indices: 196711--196869 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 78
196701 CTTGACCTTT
196711 CCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
1 CCAGAAGAATCAGTCCTGA-C--TCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CT
*
196776 -TGAAATACAGTCTTGA
62 GTGAAAGACAGTCTTGA
* * *
196792 CCAGAAGAATCAGTCCTGA-TC-AGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGA
1 CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
196855 AAGACAGTCTTGA
66 AAGACAGTCTTGA
196868 CC
1 CC
196870 TTTTTGATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
75 2 0.03
76 50 0.68
77 2 0.03
81 19 0.26
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (78 bp):
CCAGAAGAATCAGTCCTGACTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AAGACAGTCTTGA
Left flanking sequence: Indices 196211 -- 196710
GATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTA
CTGATGACATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
Right flanking sequence: Indices 196870 -- 197369
TTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTA
CTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTC
TTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTG
ATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTT
GATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAG
TCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGA
CCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACT
AATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCC
Found at i:196865 original size:43 final size:41
Alignment explanation
Indices: 196817--196913 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 41
196807 CTGATCAGAT
* * * *
196817 AGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGA-T-TGAAAGAC
**
196860 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGAC
1 AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
196901 AGTCTTGACCTTT
1 AGTCTTGACCTTT
196914 CCATTTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 19 0.40
42 1 0.02
43 28 0.58
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
AGTCTTGACCTTTTTGATAAGGTCAGTACTGATTGAAAGAC
Left flanking sequence: Indices 196317 -- 196816
TGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAA
GACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
AGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAAT
GGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGAC
CTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTG
ACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGAT
Right flanking sequence: Indices 196914 -- 197413
CCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAG
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCT
TGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTG
AAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCA
TTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCT
GACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGAC
CTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTT
Found at i:197038 original size:43 final size:42
Alignment explanation
Indices: 196977--197146 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
196967 TTCCATCAAA
**
196977 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
197020 AGTCCTGACTGTGAAAGACAGTCTTGACC-----AG-AAGAATC
1 AGTCCTGACT-TGAAAGACAGTCTTGACCTTTTTGGTAAG-GTC
* * * *
197058 AGTCCTGA--T--CAGATAGTCTTGATCTTTTTGGTAAGGTT
1 AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
* *
197096 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGAC-TTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
*
197139 AGTACTGA
1 AGTCCTGA
197147 TGACATACAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 12 0.12
35 1 0.01
37 3 0.03
38 21 0.21
39 3 0.03
41 1 0.01
42 2 0.02
43 55 0.56
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
AGTCCTGACTTGAAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 196477 -- 196976
CCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTG
GTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACAT
ACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTC
CATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCA
AGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAAT
CAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTG
ACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 197147 -- 197646
TGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGAGT
CTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCA
GTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCA
ATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGT
CCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACT
GTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGT
AAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAA
Found at i:197130 original size:298 final size:284
Alignment explanation
Indices: 196466--197079 Score: 749
Period size: 291 Copynumber: 2.1 Consensus size: 284
196456 GATCTTTTTG
* * * *
196466 GTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
1 GTAAGATCAGTCCTGAC--TCAAATA-AGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCT
*
196531 TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGT
63 TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
*
196596 ACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
128 ACTGATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
*
196661 TCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
193 TCCTGTCCTTCCATAATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTC
** *
196726 CTGACCTTTCAAGACAGTCTTGACCTTTTTG
258 CTGACCTTGAAAGACAGTCTTGACC----TA
* * * *
196757 GTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCT
1 GTAAGATCAGTCCTGA-C-TCAAATA-AGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCT
196822 TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
63 TGATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGT
** ** * *
196887 ACTGATTTCAAGACAGTCTTGACCTTTCCATT-TTTGGTCAGGTGAGTACTAATGGCATACAATT
128 ACTGATGAC-AGACA--AATGA---GT-C-TTGTATGGTCAGGTGAGTACTAATGGCATACAATT
***
196951 GCAATTGGTCCTGTCCTTCCATCAA-AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTA
185 GCAATTGGTCCTGTCCTTCCAT-AATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAG-A
*
197015 AG-GTCAGTCCTGA-CTGTGAAAGACAGTCTTGACC-A
248 AGAATCAGTCCTGACCT-TGAAAGACAGTCTTGACCTA
*
197050 G-AAGAATCAGTCCTGA-TCAGAT-AGTCTTGA
1 GTAAG-ATCAGTCCTGACTCAAATAAGTCTTGA
197080 TCTTTTTGGT
Statistics
Matches: 290, Mismatches: 20, Indels: 29
0.86 0.06 0.09
Matches are distributed among these distances:
288 8 0.03
290 4 0.01
291 133 0.46
292 8 0.03
293 11 0.04
294 3 0.01
297 3 0.01
298 113 0.39
299 7 0.02
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (284 bp):
GTAAGATCAGTCCTGACTCAAATAAGTCTTGACCAGAAGAATCAGTCCTGATAAGACAGTCTTGA
TCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACT
GATGACAGACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCC
TGTCCTTCCATAATAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTG
ACCTTGAAAGACAGTCTTGACCTA
Left flanking sequence: Indices 195966 -- 196465
TACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCC
TGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACC
TTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAG
GTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAA
TGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTTTCAAGACA
GTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCC
TTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTG
Right flanking sequence: Indices 197080 -- 197579
TCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACT
GATGACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATTAGTCCTGACCTTTCAGA
GTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGT
CAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTG
CAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAA
GACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCT
GTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGA
CTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCA
Found at i:197217 original size:16 final size:16
Alignment explanation
Indices: 197193--197223 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
197183 CATTCTCATT
197193 AGTCCTGACCTTTCAG
1 AGTCCTGACCTTTCAG
*
197209 AGTCTTGACCTTTCA
1 AGTCCTGACCTTTCA
197224 AGAAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.35
Consensus pattern (16 bp):
AGTCCTGACCTTTCAG
Left flanking sequence: Indices 196693 -- 197192
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 197224 -- 197723
AGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
AAATACAGTCTTGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
Found at i:197278 original size:43 final size:43
Alignment explanation
Indices: 197193--197317 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
197183 CATTCTCATT
*** *
197193 AGTCCTGACCTTTC-AG--AGTCTTGACCTTTCAAG-AAGAATC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG-GTC
197233 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
1 AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
** * *
197276 AGTCCTGA-CTGTGAAATACAGTCTTGACCTTTTTGATAAGGT
1 AGTCCTGACCT-TTCAAGACAGTCTTGACCTTTTTGGTAAGGT
197318 GAGTACTAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
40 14 0.19
41 2 0.03
42 2 0.03
43 51 0.71
44 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (43 bp):
AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTC
Left flanking sequence: Indices 196693 -- 197192
AAGACAGTCTTGACCTTTCCAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGG
TAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTT
GATCTTTTTGGTAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTA
CTGATTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGC
AATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGG
TCAGTCCTGACTGTGAAAGACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCT
TTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGAT
GACATACAAATGAGTCTTGATGGTCATTCCTCAATCATTCTCATT
Right flanking sequence: Indices 197318 -- 197817
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGA
AGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATG
GCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATC
TTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAAGAATCAGTCCTGATCTTT
CAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTG
ATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACA
ATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGG
TAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATC
Found at i:197548 original size:43 final size:43
Alignment explanation
Indices: 197484--197658 Score: 134
Period size: 43 Copynumber: 4.2 Consensus size: 43
197474 TTCCATCAAA
* *
197484 AGTCCTGACCTTT-CAAGACAGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
* * ** *
197527 AGTCCTGACTGTGAAATACAGTATTGA-C----CAG-AAGAATC
1 AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAG-GTC
*
197565 AGTCCTGATCTTTCAAGAT--AGTCTTGATCTTTTTGGTAAGGTC
1 AGTCCTGA-CTTTGAA-ATACAGTCTTGATCTTTTTGGTAAGGTC
* * * *
197608 AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTG
1 AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
*
197651 AGTACTGA
1 AGTCCTGA
197659 TGACATACAA
Statistics
Matches: 101, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
37 3 0.03
38 18 0.18
39 6 0.06
40 2 0.02
41 1 0.01
42 10 0.10
43 58 0.57
44 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
AGTCCTGACTTTGAAATACAGTCTTGATCTTTTTGGTAAGGTC
Left flanking sequence: Indices 196984 -- 197483
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 197659 -- 198158
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGAC
TGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGG
TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
GAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
CAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAG
TCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCC
TGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTG
Found at i:197623 original size:81 final size:82
Alignment explanation
Indices: 197484--197885 Score: 299
Period size: 81 Copynumber: 4.9 Consensus size: 82
197474 TTCCATCAAA
* *
197484 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
*
197549 ATTGACC-AGAAGAATC
66 CTTGACCTAGAAGAATC
* *
197565 AGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
* * *
197630 CTTGACCTTTTTGATA-AGGTG
66 CTTGACC---TAGA-AGA-ATC
* * * * ** ** * * * *
197651 AGTACTGATGACATACAA-ATGAGTCTTGTAT-GGTCAGGTGA-GTACTAATGGCAT-ACAATTG
1 AGTCCTGA--CCTTTCAAGAT-AGTCTTG-ATCTTTTTGGTAAGGT-C--A-GTCCTGAC-TTTG
* ** * * *** *
197712 CAAT-TGGTCCTGTCCTTCCATAATC
57 AAATACAGTCTTGACCTAGAAGAATC
* *
197737 AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
1 AGTCCTGACCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
197802 CTTGACC-AGAAGAATC
66 CTTGACCTAGAAGAATC
*
197818 AGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGT
1 AGTCCTGACCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
197878 CTTGACCT
66 CTTGACCT
197886 TTTTGATAAG
Statistics
Matches: 243, Mismatches: 56, Indels: 48
0.70 0.16 0.14
Matches are distributed among these distances:
76 54 0.22
77 2 0.01
81 88 0.36
82 10 0.04
83 2 0.01
84 18 0.07
85 6 0.02
86 18 0.07
87 7 0.03
88 18 0.07
89 2 0.01
90 10 0.04
91 8 0.03
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (82 bp):
AGTCCTGACCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAATACAGT
CTTGACCTAGAAGAATC
Left flanking sequence: Indices 196984 -- 197483
ACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAGACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGATGGTCATTCCT
CAATCATTCTCATTAGTCCTGACCTTTCAGAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTT
TGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGAC
CTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAA
Right flanking sequence: Indices 197886 -- 198385
TTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGC
ATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTT
TCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACC
TTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAA
AAGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGA
CAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAG
GTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATAC
AGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
Found at i:197801 original size:43 final size:42
Alignment explanation
Indices: 197735--197906 Score: 121
Period size: 43 Copynumber: 4.2 Consensus size: 42
197725 CCTTCCATAA
** *
197735 TCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGA-CTTGAAATACAGTCTTGATCTTTTTGGTAAGG
** *
197778 TCAGTCCTGACTGTGAAATACAGTCTTGA-C----CAG-AAGAA
1 TCAGTCCTGACT-TGAAATACAGTCTTGATCTTTTTGGTAAG-G
* *
197816 TCAGTCCTGA--TCAGAT--AGTCTTGATCTTTTTGGTAAGG
1 TCAGTCCTGACTTGAAATACAGTCTTGATCTTTTTGGTAAGG
* * *
197854 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGG
1 TCAGTCCTGAC-TTGAAATACAGTCTTGATCTTTTTGGTAAGG
* *
197897 TGAGTACTGA
1 TCAGTCCTGA
197907 TGACATACAA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 8 0.08
34 1 0.01
35 4 0.04
37 3 0.03
38 22 0.22
39 3 0.03
41 3 0.03
42 3 0.03
43 51 0.52
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (42 bp):
TCAGTCCTGACTTGAAATACAGTCTTGATCTTTTTGGTAAGG
Left flanking sequence: Indices 197235 -- 197734
TCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCT
TGACCTTTTTGATAAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATC
AGTCCTGACCTTTCAAGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTG
GTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATCAAAAGTCCTGACCT
TTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTATTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGT
GAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA
Right flanking sequence: Indices 197907 -- 198406
TGACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTG
TCCTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGAC
CTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAG
AAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAG
ACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
Found at i:198012 original size:19 final size:19
Alignment explanation
Indices: 197984--198267 Score: 135
Period size: 19 Copynumber: 13.7 Consensus size: 19
197974 CTTCCATAAT
*
197984 CAGTCCTGACCTTTCAAGA
1 CAGTCTTGACCTTTCAAGA
198003 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
198026 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* *
198046 CAGTCTTGACCTTTTTGGTAAGGT
1 CAGTCTTGACC--TTT--CAA-GA
* ** *
198070 CAGTCCTGACCTTGAAATA
1 CAGTCTTGACCTTTCAAGA
**
198089 CAGTCTTGACC--AGAAGAA
1 CAGTCTTGACCTTTCAAG-A
* *
198107 TCAGTCCTGATCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
* * *
198127 TAGTCTTGATCTTTCAAAA
1 CAGTCTTGACCTTTCAAGA
*
198146 AAGGTCAGTACTGA--TTTCAAGA
1 CA-GTC--T--TGACCTTTCAAGA
198168 CAGTCTTGACCTTTCAAGAAAAA
1 CAGTCTTGACCTTTCAAG----A
*
198191 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
198211 CAGTCTTGACCTTTCAAGAAGAA
1 CAGTCTTGACCTTTC---AAG-A
*
198234 TCAGTCCTGACCTTTCAAGA
1 -CAGTCTTGACCTTTCAAGA
198254 CAGTCTTGACCTTT
1 CAGTCTTGACCTTT
198268 TTGGTCAGGT
Statistics
Matches: 206, Mismatches: 28, Indels: 62
0.70 0.09 0.21
Matches are distributed among these distances:
17 5 0.02
18 1 0.00
19 95 0.46
20 9 0.04
21 15 0.07
22 17 0.08
23 5 0.02
24 59 0.29
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (19 bp):
CAGTCTTGACCTTTCAAGA
Left flanking sequence: Indices 197484 -- 197983
AGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGT
ATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
TATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTG
ACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACC
AGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAAAGA
CAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAGGTG
AGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAAT
Right flanking sequence: Indices 198268 -- 198767
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCT
GACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTGAACAAGAAGG
CTTTGCTCTGACGTGACATGACCTTCAGCAATTCCAAGTTGTCCCTAACGCTTCGCTTTGGCGCC
TTCATCAAAGATTCTAATTTGAAATTTGCCGAAAAAGGCTTTGCTCCTTTCTTTGAAGCTTTGCT
CCCCAGGGGCTTTGCTCGTTGGAAGAAGAAAGGCTGTGTTTCGGA
Found at i:198030 original size:24 final size:24
Alignment explanation
Indices: 197981--198045 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
197971 GTCCTTCCAT
197981 AATCAGTCCTGACCTTTC---AAG
1 AATCAGTCCTGACCTTTCAAGAAG
*
198002 -A-CAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGAAG
198024 AATCAGTCCTGACCTTTCAAGA
1 AATCAGTCCTGACCTTTCAAGA
198046 CAGTCTTGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 14 0.38
20 1 0.03
22 3 0.08
23 1 0.03
24 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (24 bp):
AATCAGTCCTGACCTTTCAAGAAG
Left flanking sequence: Indices 197481 -- 197980
AAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 198046 -- 198545
CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAG
TCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGACAGTCTTG
ACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCC
TGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGA
CCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCA
GATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATA
AGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAAGGTCACTGATT
CAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGCA
Found at i:198036 original size:248 final size:248
Alignment explanation
Indices: 196718--198016 Score: 1025
Period size: 248 Copynumber: 5.1 Consensus size: 248
196708 TTTCCAGAAG
196718 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT-TGAAAT
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGA-CTGTGAAAT
*
196782 ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
65 ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
* * ** * **
196847 GACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTACTGATTTCAAGACAGTCTTGACCT
130 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGAC-ATACA--AATGA---
* *
196912 TTCCATT-TTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
189 GT-C-TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
* *
196973 CAA-AAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAG
1 -AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAAT
*
197037 ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCT
65 ACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCT
197102 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
130 GACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTG
* * * *
197167 -ATGGTCA--T---TCCTCAAT--CATTC---T-C-ATTAGTCCTGACCTT---T
195 TATGGTCAGGTGAGTACT-AATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
* * * * * * * *
197206 CA-GAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACC--TTT--CAA-GACAGTCTTGAC-CT-
1 AATCAGTCCTGACCTTTC---AAG-A-CAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTG
* * * * *
197263 ---T----T-TTG----GTAAG-GTCAGTCCTGACTGTGAAATACAGTCTTGACCTTTTTGATAA
61 AAATACAGTCTTGACCAG-AAGAATCAGTCCTGA---TCAGAT--AGTCTTGATCTTTTTGGTAA
* * * ** * * * ** * *
197315 GGTGAGTACT-A--ATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAA--TCAGTCCTGACC
120 GGTCAGTCCTGACTTTGAAAGAC-AGT-C--TT-GACCT-T--TTTGATAAGGTGAGTACTGA--
** * * * * * * * * **
197375 TTTCA-AGAAGAATGAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGA
175 TGACATA-CA-AATGAGTCTTG---TAT--GGTCAG--GTGA---GT--ACTAATGG-C-----A
* **** * ** *** *
197439 GTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
220 -TAC-AATTGCA-ATTGGTCCTGTCCTTCC-----AT
* *
197476 CCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
1 -AATC---AGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGA
*
197541 AATACAGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGG
62 AATACAGTCTTGACCAGAAGAATCAGTCCTGA----TC-AGATAGTCTTGATCTTTTTGGTAAGG
197606 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
122 TCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAAT
197671 GAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
187 GAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
*
197733 AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
197798 CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
66 CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
197863 ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
131 ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
197928 ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
196 ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
197981 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
198017 CAAGAAGAAT
Statistics
Matches: 825, Mismatches: 117, Indels: 210
0.72 0.10 0.18
Matches are distributed among these distances:
218 11 0.01
219 3 0.00
220 5 0.01
221 6 0.01
222 5 0.01
223 27 0.03
224 2 0.00
225 4 0.00
226 9 0.01
227 1 0.00
228 10 0.01
229 10 0.01
231 1 0.00
232 24 0.03
233 4 0.00
235 9 0.01
236 14 0.02
237 11 0.01
238 1 0.00
239 1 0.00
241 4 0.00
242 3 0.00
243 3 0.00
245 2 0.00
246 1 0.00
247 9 0.01
248 189 0.23
249 4 0.00
252 3 0.00
253 88 0.11
254 7 0.01
255 168 0.20
256 5 0.01
257 1 0.00
260 1 0.00
262 12 0.01
263 6 0.01
264 3 0.00
265 1 0.00
270 11 0.01
271 8 0.01
272 6 0.01
273 1 0.00
274 2 0.00
275 23 0.03
276 4 0.00
278 4 0.00
280 3 0.00
283 10 0.01
284 11 0.01
285 4 0.00
286 9 0.01
287 4 0.00
288 5 0.01
289 37 0.04
290 5 0.01
291 5 0.01
292 5 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (248 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Left flanking sequence: Indices 196218 -- 196717
TTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGA
CATACAAATGAGTCTTGACCTTTCCAGACAGTCCTGACCTTTCCAGAAGAATGAGTCCTGACCTT
TCAAGACAGTCTTGACCTTTCCATTTTTGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGG
TCCTGTCCTTCCATCAAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTC
CTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGG
TAAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATA
CAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCC
ATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCCAGAAG
Right flanking sequence: Indices 198017 -- 198516
CAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCT
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAA
AGGTCAGTACTGATTTCAAGACAGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGAC
AGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGG
TTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGAAATACA
GTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGAC
TTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACC
TTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCC
Found at i:198042 original size:43 final size:43
Alignment explanation
Indices: 197981--198267 Score: 369
Period size: 43 Copynumber: 6.8 Consensus size: 43
197971 GTCCTTCCAT
197981 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
***
198024 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAG-AAG
* ** *
198068 -GTCAGTCCTGACCTTGAAATACAGTCTTGA-C---C-AGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* * *
198105 AATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAA-AA-
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
* *
198146 AAGGTCAGTACTGA--TTTCAAGACAGTCTTGACCTTTCAAGAAA
1 AA--TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
198189 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
198232 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
1 AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTT
198268 TTGGTCAGGT
Statistics
Matches: 211, Mismatches: 20, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
37 3 0.01
38 25 0.12
39 1 0.00
41 34 0.16
42 6 0.03
43 139 0.66
44 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
AATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAG
Left flanking sequence: Indices 197481 -- 197980
AAAAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATAC
AGTATTGACCAGAAGAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATACAGTCTTG
ACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTTTGAA
AGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGTATGGTCAG
GTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
Right flanking sequence: Indices 198268 -- 198767
TTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTG
TGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTT
AGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGA
GTCTTGACCTTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCT
GACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTGAACAAGAAGG
CTTTGCTCTGACGTGACATGACCTTCAGCAATTCCAAGTTGTCCCTAACGCTTCGCTTTGGCGCC
TTCATCAAAGATTCTAATTTGAAATTTGCCGAAAAAGGCTTTGCTCCTTTCTTTGAAGCTTTGCT
CCCCAGGGGCTTTGCTCGTTGGAAGAAGAAAGGCTGTGTTTCGGA
Found at i:198201 original size:24 final size:23
Alignment explanation
Indices: 198168--198253 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 23
198158 GATTTCAAGA
*
198168 CAGTCTTGACCTTTCAAGAAAAAT
1 CAGTCCTGACCTTTCAAG-AAAAT
198192 CAGTCCTGACCTTTCAAG---A-
1 CAGTCCTGACCTTTCAAGAAAAT
*
198211 CAGTCTTGACCTTTCAAGAAGAAT
1 CAGTCCTGACCTTTCAAGAA-AAT
198235 CAGTCCTGACCTTTCAAGA
1 CAGTCCTGACCTTTCAAGA
198254 CAGTCTTGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.31
20 1 0.02
23 1 0.02
24 35 0.65
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (23 bp):
CAGTCCTGACCTTTCAAGAAAAT
Left flanking sequence: Indices 197668 -- 198167
AATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCAT
AATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGAAATA
CAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGTCCTG
ACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGT
ATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTCCTGA
CCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTGACCT
TTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCTTTC
AAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGA
Right flanking sequence: Indices 198254 -- 198753
CAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGAAAGACAGTCTTGACCTTTTTGATAAG
GTCAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATC
TTTTTGGTAAGGTTAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAA
TCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAA
GCTGAACAAGAAGGCTTTGCTCTGACGTGACATGACCTTCAGCAATTCCAAGTTGTCCCTAACGC
TTCGCTTTGGCGCCTTCATCAAAGATTCTAATTTGAAATTTGCCGAAAAAGGCTTTGCTCCTTTC
TTTGAAGCTTTGCTCCCCAGGGGCTTTGCTCGTTGGAAGAAGAAA
Found at i:198297 original size:43 final size:43
Alignment explanation
Indices: 198164--198448 Score: 186
Period size: 43 Copynumber: 6.9 Consensus size: 43
198154 TACTGATTTC
** ** **
198164 AAGACAGTCTTGACCTTTCAAGA-AAAATCAGTCCTGACCT-TTC
1 AAGACAGTCTTGACCTTT-TTGATAAGGTCAGTCCTGA-CTGTGA
** * * **
198207 AAGACAGTCTTGACC-TTTCAAGAAGAATCAGTCCTGACCT-TTC
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGA-CTGTGA
* * *
198250 AAGACAGTCTTGACCTTTTTGGTCAGGTTAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
198293 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* * *
198336 AATACAGTCTTGACC------AGAAGAATCAGTCCTGA---T--
1 AAGACAGTCTTGACCTTTTTGATAAG-GTCAGTCCTGACTGTGA
* * * * * *
198369 CAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
* *
198412 AAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGA
1 AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGA
198449 TGACATACAA
Statistics
Matches: 193, Mismatches: 33, Indels: 32
0.75 0.13 0.12
Matches are distributed among these distances:
33 11 0.06
35 1 0.01
37 4 0.02
38 19 0.10
39 3 0.02
41 2 0.01
42 6 0.03
43 142 0.74
44 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (43 bp):
AAGACAGTCTTGACCTTTTTGATAAGGTCAGTCCTGACTGTGA
Left flanking sequence: Indices 197664 -- 198163
TACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTT
CCATAATCAGTCCTGACCTTTCAAGACAGTCTTGATCTTTTTGGTAAGGTCAGTCCTGACTGTGA
AATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTCAGT
CCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTC
TTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTCCTTCCATAATCAGTC
CTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCTTTCAAGACAGTCTTG
ACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATC
TTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTC
Right flanking sequence: Indices 198449 -- 198948
TGACATACAAATGAGTCTTGACCTTCCTGACCTTTCCATAAGGTCACTGATTCAGGTCAGACAAA
TCCTGACAAGTGCTGACCATACCAAAATTGCAATTGTATGCCATTAGTGCTGACTCTGACAAAAA
GCTGAACAAGAAGGCTTTGCTCTGACGTGACATGACCTTCAGCAATTCCAAGTTGTCCCTAACGC
TTCGCTTTGGCGCCTTCATCAAAGATTCTAATTTGAAATTTGCCGAAAAAGGCTTTGCTCCTTTC
TTTGAAGCTTTGCTCCCCAGGGGCTTTGCTCGTTGGAAGAAGAAAGGCTGTGTTTCGGATTGGGA
TCAGAGGAGTCAACAAGCGAGCCAAGATGATCATAGATGGATCCGAGAATGTGGCGTCGACGGAG
CTCGTAGAGAAGTTGGGAATGAAGTGTGAACCCCCCATACAAGCTCGGATGGTTCCAGAAGGGAC
ACGAGCTGTGGGTGAGAAGGCAGTGCCGAGTGCCGATGAACCTCG
Found at i:198306 original size:19 final size:19
Alignment explanation
Indices: 198279--198349 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
198269 TGGTCAGGTT
198279 AGTCCTGACTGTGAAAGAC
1 AGTCCTGACTGTGAAAGAC
* * *
198298 AGTCTTGACCTTTTTGATAAGGTC
1 AGTCCTGA-C--TGTGA-AA-GAC
*
198322 AGTCCTGACTGTGAAATAC
1 AGTCCTGACTGTGAAAGAC
*
198341 AGTCTTGAC
1 AGTCCTGAC
198350 CAGAAGAATC
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 16 0.41
20 3 0.08
21 4 0.10
22 4 0.10
23 3 0.08
24 9 0.23
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
AGTCCTGACTGTGAAAGAC
Left flanking sequence: Indices 197779 -- 198278
CAGTCCTGACTGTGAAATACAGTCTTGACCAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTT
TTTGGTAAGGTCAGTCCTGACTTTGAAAGACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATG
ACATACAAATGAGTCTTGTATGGTCAGGTGAGTACTAATGGCATACAATTGCAATTGGTCCTGTC
CTTCCATAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAATCAGTCCTGACCT
TTCAAGACAGTCTTGACCTTTTTGGTAAGGTCAGTCCTGACCTTGAAATACAGTCTTGACCAGAA
GAATCAGTCCTGATCTTTCAAGATAGTCTTGATCTTTCAAAAAAGGTCAGTACTGATTTCAAGAC
AGTCTTGACCTTTCAAGAAAAATCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTCAAGAAGAA
TCAGTCCTGACCTTTCAAGACAGTCTTGACCTTTTTGGTCAGGTT
Right flanking sequence: Indices 198350 -- 198849
CAGAAGAATCAGTCCTGATCAGATAGTCTTGATCTTTTTGGTAAGGTTAGTCCTGACTTTGAAAG
ACAGTCTTGACCTTTTTGATAAGGTGAGTACTGATGACATACAAATGAGTCTTGACCTTCCTGAC
CTTTCCATAAGGTCACTGATTCAGGTCAGACAAATCCTGACAAGTGCTGACCATACCAAAATTGC
AATTGTATGCCATTAGTGCTGACTCTGACAAAAAGCTGAACAAGAAGGCTTTGCTCTGACGTGAC
ATGACCTTCAGCAATTCCAAGTTGTCCCTAACGCTTCGCTTTGGCGCCTTCATCAAAGATTCTAA
TTTGAAATTTGCCGAAAAAGGCTTTGCTCCTTTCTTTGAAGCTTTGCTCCCCAGGGGCTTTGCTC
GTTGGAAGAAGAAAGGCTGTGTTTCGGATTGGGATCAGAGGAGTCAACAAGCGAGCCAAGATGAT
CATAGATGGATCCGAGAATGTGGCGTCGACGGAGCTCGTAGAGAA
Found at i:203223 original size:19 final size:18
Alignment explanation
Indices: 203199--203239 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 18
203189 CAATTATGGA
203199 AGGACTCTCTTGAAAGGTC
1 AGGACTCTC-TGAAAGGTC
203218 AGGA--CTCTGAAAGGTC
1 AGGACTCTCTGAAAGGTC
203234 AGGACT
1 AGGACT
203240 AATGAGAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 13 0.65
17 3 0.15
19 4 0.20
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (18 bp):
AGGACTCTCTGAAAGGTC
Left flanking sequence: Indices 202699 -- 203198
AATGGGAATCAGTAATGAAAAGACCAGTGACAGCACGACAGAGAAAGTGACTGACAAATAAATAA
AGGGCGAGGAAAGAGAACGCAAGAAGGTTCTTTTGTTGTTCCTGAATTCCCCTCCGGGGAGGAAG
CGTCAAGCGGATATCTTCCGACTCAACTATGACTAAGAGATAGGAATCGAATCAGTTTCCATAGT
CGTTTGTTTGTGCGCCCGCCAATCCATGAATGAATTCCTCCGCGATAGACTAAACTACTCGATTC
AATCACGAATGATCGGTTGCCCCAACGTCATGTCACGTTATTAGCAAAGCCCCCAGCGTCACGTC
ACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATT
TGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTA
ATGGCATACAATTGCCATTAGTGTCCATAATTGCACAATTATGGA
Right flanking sequence: Indices 203240 -- 203739
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
TCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
Found at i:203230 original size:16 final size:16
Alignment explanation
Indices: 203209--203239 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
203199 AGGACTCTCT
203209 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
203225 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
203240 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 202709 -- 203208
AGTAATGAAAAGACCAGTGACAGCACGACAGAGAAAGTGACTGACAAATAAATAAAGGGCGAGGA
AAGAGAACGCAAGAAGGTTCTTTTGTTGTTCCTGAATTCCCCTCCGGGGAGGAAGCGTCAAGCGG
ATATCTTCCGACTCAACTATGACTAAGAGATAGGAATCGAATCAGTTTCCATAGTCGTTTGTTTG
TGCGCCCGCCAATCCATGAATGAATTCCTCCGCGATAGACTAAACTACTCGATTCAATCACGAAT
GATCGGTTGCCCCAACGTCATGTCACGTTATTAGCAAAGCCCCCAGCGTCACGTCACGAGCCAAT
TTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTC
GTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACA
ATTGCCATTAGTGTCCATAATTGCACAATTATGGAAGGACTCTCT
Right flanking sequence: Indices 203240 -- 203739
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAA
GGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTA
CTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAG
TCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTG
ATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
Found at i:203306 original size:43 final size:42
Alignment explanation
Indices: 203258--203355 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 42
203248 TGATTGAGGA
* * *
203258 AAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTC-TTC
* *
203301 AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTG
1 AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
203343 AAAGATCAGAACT
1 AAAG-TCAGAACT
203356 TCTTCTTCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (42 bp):
AAAGTCAGAACTAACCTTACCAAAAAGATCAAGACTGTCTTC
Left flanking sequence: Indices 202758 -- 203257
AAATAAAGGGCGAGGAAAGAGAACGCAAGAAGGTTCTTTTGTTGTTCCTGAATTCCCCTCCGGGG
AGGAAGCGTCAAGCGGATATCTTCCGACTCAACTATGACTAAGAGATAGGAATCGAATCAGTTTC
CATAGTCGTTTGTTTGTGCGCCCGCCAATCCATGAATGAATTCCTCCGCGATAGACTAAACTACT
CGATTCAATCACGAATGATCGGTTGCCCCAACGTCATGTCACGTTATTAGCAAAGCCCCCAGCGT
CACGTCACGAGCCAATTTCAAAGTCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAAT
CTGATTTGCTTTGCTCGTGACATTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAA
ACACTAATGGCATACAATTGCCATTAGTGTCCATAATTGCACAATTATGGAAGGACTCTCTTGAA
AGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
Right flanking sequence: Indices 203356 -- 203855
TCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCA
TACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
Found at i:203434 original size:28 final size:28
Alignment explanation
Indices: 203411--203483 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
203401 TGACAATTGT
203411 ATGCCATTAGTACTCACTTGACAAACAA
1 ATGCCATTAGTACTCACTTGACAAACAA
203439 ATGCCATTAGTACTCACTTGAC-AACAAA
1 ATGCCATTAGTACTCACTTGACAAAC-AA
*
203467 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
203484 CATACCAACA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 3 0.07
28 40 0.93
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAAACAA
Left flanking sequence: Indices 202911 -- 203410
GCCAATCCATGAATGAATTCCTCCGCGATAGACTAAACTACTCGATTCAATCACGAATGATCGGT
TGCCCCAACGTCATGTCACGTTATTAGCAAAGCCCCCAGCGTCACGTCACGAGCCAATTTCAAAG
TCAAGGTCAGCGTACATGTCATTCAAAGTTGCGAGTGTCAATCTGATTTGCTTTGCTCGTGACAT
TGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCA
TTAGTGTCCATAATTGCACAATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAG
GACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTT
AAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 203484 -- 203983
CATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAG
AATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTAT
GCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGG
Found at i:203668 original size:43 final size:42
Alignment explanation
Indices: 203605--203774 Score: 144
Period size: 43 Copynumber: 4.2 Consensus size: 42
203595 TTGTATGTCA
* * *
203605 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
203648 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * *
203686 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
*
203724 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
203767 TCAGGACT
1 TCAGGACT
203775 TTTGATGGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 20 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 52 0.53
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 203105 -- 203604
TTGGAAAGCCAAAGCGAAGCGAGTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCC
ATTAGTGTCCATAATTGCACAATTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCA
GGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCT
TAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAAACAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACAT
GAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 203775 -- 204274
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGG
AAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACC
CTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACT
Found at i:203753 original size:76 final size:78
Alignment explanation
Indices: 203627--204067 Score: 319
Period size: 76 Copynumber: 5.4 Consensus size: 78
203617 TTATCAAAAA
* *
203627 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
203690 GACTGATTCTTCT
66 GACTGATTCTTCT
*
203703 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
**
203768 CAGGACT--TT-TGAT
63 CAGGACTGATTCTTCT
* * * * * * *
203781 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTGACCTTACC---AA---AAAGGT
* * *
203844 CAAGACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
47 CAAGACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
203882 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
203945 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
203958 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
204023 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
*
204039 GGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 GGTCAAGACTGTCTTTCAAA-GTCAGGACT
204068 CATTCTTCTT
Statistics
Matches: 286, Mismatches: 38, Indels: 77
0.71 0.09 0.19
Matches are distributed among these distances:
76 106 0.37
77 7 0.02
78 5 0.02
79 7 0.02
80 6 0.02
81 60 0.21
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
97 2 0.01
98 5 0.02
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 203127 -- 203626
GTGTGCTTATGATTTGTGGAAACACTAATGGCATACAATTGCCATTAGTGTCCATAATTGCACAA
TTATGGAAGGACTCTCTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGA
AAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACA
GGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 204068 -- 204567
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGA
AAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGG
TCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Found at i:203983 original size:38 final size:38
Alignment explanation
Indices: 203941--204076 Score: 157
Period size: 38 Copynumber: 3.4 Consensus size: 38
203931 GACTATCTGA
* **
203941 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
203979 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
204022 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
*
204060 TCAGGACTCATTCTTCT
1 TCAGGACTGATTCTTCT
204077 TGAAAGGTCA
Statistics
Matches: 83, Mismatches: 8, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
37 3 0.04
38 47 0.57
39 1 0.01
42 1 0.01
43 28 0.34
44 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 203441 -- 203940
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACC
ATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAA
CTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 204077 -- 204576
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGG
ACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGT
ACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTG
ACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATG
TCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTT
TCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGA
CTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGA
Found at i:204022 original size:19 final size:19
Alignment explanation
Indices: 203998--204067 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
203988 ACCTTACCAA
203998 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
204017 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
204037 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
204055 AAAGGTCAGGACT
1 AAAGGTCAAGACT
204068 CATTCTTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
19 32 0.80
21 4 0.10
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 203498 -- 203997
TACTCACCATACCAAAACAGGTGAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAA
AGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 204068 -- 204567
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGA
AAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGG
TCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Found at i:204030 original size:43 final size:41
Alignment explanation
Indices: 203838--204067 Score: 166
Period size: 43 Copynumber: 5.8 Consensus size: 41
203828 CCAAAAATGG
*
203838 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTA-CAA
* *
203879 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTA-CAA
* * *
203922 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT-C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACAA
* * * *
203957 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGTCAGGACTGACCTTA-CAA
*
203998 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-C--
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACAA
*
204038 --TGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACT
204068 CATTCTTCTT
Statistics
Matches: 151, Mismatches: 22, Indels: 35
0.73 0.11 0.17
Matches are distributed among these distances:
33 10 0.07
35 1 0.01
37 4 0.03
38 48 0.32
39 5 0.03
41 17 0.11
42 10 0.07
43 53 0.35
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (41 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACAA
Left flanking sequence: Indices 203338 -- 203837
TCTTGAAAGATCAGAACTTCTTCTTCTTAAAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATG
ACAATTGTATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTGCTCACCATACCAACATGAGTACTCACCATACCAAAACAGGTGAGGACTCTGAAA
GGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 204068 -- 204567
CATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGG
TCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGA
AAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTAT
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGT
ACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGAC
AAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGG
TCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Found at i:204079 original size:24 final size:24
Alignment explanation
Indices: 204050--204095 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
204040 GTCAAGACTG
204050 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTCATTCT
204074 TCTTGAAAGGTCAGGACTCATT
1 TCTTGAAAGGTCAGGACTCATT
204096 ATGGAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 203550 -- 204049
ATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCA
CCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACT
ATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATG
CCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTG
Right flanking sequence: Indices 204096 -- 204595
ATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAG
GACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAAT
GCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTC
TCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTAC
AAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
Found at i:204120 original size:30 final size:28
Alignment explanation
Indices: 204080--204138 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
204070 TTCTTCTTGA
204080 AAGGTCAGGACTCATTATGGAAAAGTCAGG
1 AAGGTCAGGACTC-TT-TGGAAAAGTCAGG
* * *
204110 AAGGTGAGGACTCTTTTGAAAGGTCAGG
1 AAGGTCAGGACTCTTTGGAAAAGTCAGG
204138 A
1 A
204139 CTCTGAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
29 2 0.08
30 12 0.46
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.22
Consensus pattern (28 bp):
AAGGTCAGGACTCTTTGGAAAAGTCAGG
Left flanking sequence: Indices 203580 -- 204079
CCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGA
Right flanking sequence: Indices 204139 -- 204638
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTC
AGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATT
AGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCAC
TTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAA
ATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGA
CTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
Found at i:204147 original size:16 final size:16
Alignment explanation
Indices: 204126--204156 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
204116 AGGACTCTTT
204126 TGAAAGGTCAGGACTC
1 TGAAAGGTCAGGACTC
204142 TGAAAGGTCAGGACT
1 TGAAAGGTCAGGACT
204157 AATGAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAGGACTC
Left flanking sequence: Indices 203626 -- 204125
AGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGG
ACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACT
GTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACT
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTC
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTT
Right flanking sequence: Indices 204157 -- 204656
AATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGG
ACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATG
TCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACT
GTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAG
ACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
Found at i:204208 original size:19 final size:19
Alignment explanation
Indices: 204184--204249 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
204174 AATGACCATA
204184 CAGGACTCTTTTGAAAGGT
1 CAGGACTCTTTTGAAAGGT
* * *
204203 CAGGACTCATTATGGAAGGA
1 CAGGACTC-TTTTGAAAGGT
*
204223 CAGGACCCTTTTGAAAGGT
1 CAGGACTCTTTTGAAAGGT
204242 CAGGACTC
1 CAGGACTC
204250 ATGACAATTG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 23 0.61
20 15 0.39
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (19 bp):
CAGGACTCTTTTGAAAGGT
Left flanking sequence: Indices 203684 -- 204183
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATA
Right flanking sequence: Indices 204250 -- 204749
ATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACC
ATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAA
Found at i:204284 original size:28 final size:28
Alignment explanation
Indices: 204261--204443 Score: 218
Period size: 28 Copynumber: 6.6 Consensus size: 28
204251 TGACAATTGT
204261 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
204289 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
204317 ATGCCATTAGTACTCACTTGACAACAAA
1 ATGCCATTAGTACTCACTTGACAACAAA
* * *
204345 TTG-TA-T-GTCTCTCACTTGACAA-ACAA
1 ATGCCATTAGT-ACTCACTTGACAACA-AA
204371 ATGCCATTAGTACTCACTTGACAA-ACAA
1 ATGCCATTAGTACTCACTTGACAACA-AA
* *
204399 ATGTCATTAGTACTCAC-TGTACAA-ACCA
1 ATGCCATTAGTACTCACTTG-ACAACA-AA
*
204427 ATGTCATTAGTACTCAC
1 ATGCCATTAGTACTCAC
204444 CATACCAAAA
Statistics
Matches: 141, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
25 3 0.02
26 17 0.12
27 4 0.03
28 115 0.82
29 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTTGACAACAAA
Left flanking sequence: Indices 203761 -- 204260
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
AGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTAT
GGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGT
Right flanking sequence: Indices 204444 -- 204943
CATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAA
TGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCA
AGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGAT
TCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATT
GAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Found at i:204460 original size:28 final size:28
Alignment explanation
Indices: 204375--204460 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
204365 AAACAAATGC
* *
204375 CATTAGTACTCA-CTTGAC-AAACAAATGT
1 CATTAGTACTCACCAT-ACAAAAC-AAGGT
** * *
204403 CATTAGTACTCACTGTACAAACCAATGT
1 CATTAGTACTCACCATACAAAACAAGGT
204431 CATTAGTACTCACCATACCAAAAC-AGGT
1 CATTAGTACTCACCATA-CAAAACAAGGT
204459 CA
1 CA
204461 GGACTTTCTG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 39 0.81
29 9 0.19
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (28 bp):
CATTAGTACTCACCATACAAAACAAGGT
Left flanking sequence: Indices 203875 -- 204374
TCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTG
ATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCA
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTC
AGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAA
GGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGC
CATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTAC
TCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGC
Right flanking sequence: Indices 204461 -- 204960
GGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTA
TTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Found at i:204479 original size:19 final size:17
Alignment explanation
Indices: 204455--204500 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
204445 ATACCAAAAC
204455 AGGTCAGGACTTTCTGGAA
1 AGGTCAGGAC-TTCT-GAA
*
204474 AGGTCAAGAC-TCTGAA
1 AGGTCAGGACTTCTGAA
204490 AGGTCAGGACT
1 AGGTCAGGACT
204501 AATGAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 12 0.50
17 3 0.12
19 9 0.38
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (17 bp):
AGGTCAGGACTTCTGAA
Left flanking sequence: Indices 203955 -- 204454
TCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGT
CAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTA
TGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTT
GACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAA
TTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAC
Right flanking sequence: Indices 204501 -- 205000
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGA
TTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
Found at i:204695 original size:76 final size:79
Alignment explanation
Indices: 204569--204725 Score: 248
Period size: 76 Copynumber: 2.0 Consensus size: 79
204559 TTATCAAAAA
*
204569 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
204631 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* *
204645 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
204710 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
204726 TGAAAGGTGA
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
76 53 0.73
77 2 0.03
79 1 0.01
81 17 0.23
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 204069 -- 204568
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTGAGGACTCTTTTGAAAGGT
CAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATACAGGACTCTTTTGAA
AGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATG
CCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTA
CTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACA
AACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGT
CAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 204726 -- 205225
TGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTT
GAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCA
CAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAA
GATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGAC
CTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
Found at i:204716 original size:19 final size:19
Alignment explanation
Indices: 204685--204759 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
204675 ACCTTACCAA
*
204685 AAAGATCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
204704 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
* *
204728 AAAGGTGAAGACTGTTTTG
1 AAAGGTCAAGACTGTCTTG
204747 AAAGGTCAAGACT
1 AAAGGTCAAGACT
204760 CATTTGTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 28 0.62
24 17 0.38
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 204185 -- 204684
AGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGTCAGGACTC
ATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACA
AAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAATGCCATTA
GTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACC
ATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 204760 -- 205259
CATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTG
ATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACT
GTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTC
AGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
Found at i:204717 original size:43 final size:42
Alignment explanation
Indices: 204547--204718 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
204537 TTGTATGTCA
* * * *
204547 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* * *
204590 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
204628 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCAAAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
204666 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
204709 TCAGGACTGA
1 TCAGGACTGA
204719 TTCTTCTTGA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 5 0.05
43 52 0.53
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 204047 -- 204546
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAA
GGTGAGGACTCTTTTGAAAGGTCAGGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATACAGGACTCTTTTGAAAGGTCAGGACTCATTATGGAAGGACAGGACCCTTTTGAAAGGT
CAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACT
TGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCTCTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAAACCAATGTCATTAG
TACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 204719 -- 205218
TTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCAC
CTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTG
TATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTT
TTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACC
Found at i:204765 original size:19 final size:19
Alignment explanation
Indices: 204725--204765 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
204715 CTGATTCTTC
* **
204725 TTGAAAGGTGAAGACTGTT
1 TTGAAAGGTCAAGACTCAT
204744 TTGAAAGGTCAAGACTCAT
1 TTGAAAGGTCAAGACTCAT
204763 TTG
1 TTG
204766 TATGTCATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (19 bp):
TTGAAAGGTCAAGACTCAT
Left flanking sequence: Indices 204225 -- 204724
GGACCCTTTTGAAAGGTCAGGACTCATGACAATTGTATGCCATTAGTACTCACTTGACAACAAAA
TGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTCT
CTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTA
CAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACT
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTT
ACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
Right flanking sequence: Indices 204766 -- 205265
TATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTT
ATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTG
AAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAT
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
Found at i:204837 original size:43 final size:43
Alignment explanation
Indices: 204789--205202 Score: 335
Period size: 43 Copynumber: 9.9 Consensus size: 43
204779 CTCACCTTTT
* * *
204789 TTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTA
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
* * * * *
204832 TTGAAAGGTCAATACTGTATTTCACA-GTCAGGACTGA-CCTTA
1 TTGAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTTA
** * **
204874 TCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTA
1 T-TGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTTA
*** *
204917 CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 -TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
* *
204961 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
*
205004 TTGAAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTA
* *
205045 TTGAAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTT-
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
* * * ** *
205082 CT----GGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTA
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
*** *
205120 CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
1 -TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
*
205164 TGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
1 TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
205203 ATGGAAGGAC
Statistics
Matches: 306, Mismatches: 43, Indels: 44
0.78 0.11 0.11
Matches are distributed among these distances:
33 9 0.03
34 1 0.00
36 3 0.01
37 6 0.02
38 20 0.07
39 1 0.00
40 2 0.01
41 26 0.08
42 13 0.04
43 214 0.70
44 11 0.04
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTA
Left flanking sequence: Indices 204289 -- 204788
ATGCCATTAGTACTCACTTGACAACAAAATGCCATTAGTACTCACTTGACAACAAATTGTATGTC
TCTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGT
ACAAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGAC
TCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
AGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGA
TCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTT
TTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTT
Right flanking sequence: Indices 205203 -- 205702
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCT
Found at i:204890 original size:24 final size:24
Alignment explanation
Indices: 204858--204934 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 24
204848 GTATTTCACA
*
204858 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
204882 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * *
204901 GTCAGGACTAACCTTACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
204925 GTCAAGACTG
1 GTCAAGACTG
204935 TCTTGAAAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.43
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 204358 -- 204857
ACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGTCATTAGTACTCACTGTACAA
ACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACC
AAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGA
AAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACA
Right flanking sequence: Indices 204935 -- 205434
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
Found at i:204945 original size:19 final size:19
Alignment explanation
Indices: 204921--205028 Score: 108
Period size: 19 Copynumber: 5.2 Consensus size: 19
204911 ACCTTACCAA
204921 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
204940 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
204964 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
204983 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
205007 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
205026 AAA
1 AAA
205029 TCAGTACTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
19 39 0.52
24 36 0.48
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 204421 -- 204920
AAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 205029 -- 205528
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACT
GTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGAT
TCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCC
ATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTG
Found at i:204964 original size:24 final size:23
Alignment explanation
Indices: 204921--205020 Score: 108
Period size: 24 Copynumber: 4.6 Consensus size: 23
204911 ACCTTACCAA
204921 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
204940 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATT-TTCTTG
204964 AAAGGTCAAGACTG----TCTTG
1 AAAGGTCAAGACTGATTTTCTTG
*
204983 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGA-TTTTCTTG
205007 AAAGGTCAAGACTG
1 AAAGGTCAAGACTG
205021 TCTTGAAATC
Statistics
Matches: 67, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
19 31 0.46
24 36 0.54
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTTTCTTG
Left flanking sequence: Indices 204421 -- 204920
AAACCAATGTCATTAGTACTCACCATACCAAAACAGGTCAGGACTTTCTGGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTT
GAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTG
AAAGATCAGGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 205021 -- 205520
TCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGG
ACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATC
AAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAAT
TGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
Found at i:205148 original size:19 final size:19
Alignment explanation
Indices: 205124--205199 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
205114 ACCTTACCAA
205124 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
205143 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
205167 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
205186 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
205200 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 204624 -- 205123
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAG
ATCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTGAAGACTGTTTTGAAAGGTC
AAGACTCATTTGTATGTCATCAGTACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCA
GGACTGATTCTTATTGAAAGGTCAATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTC
AAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 205200 -- 205699
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:205340 original size:43 final size:42
Alignment explanation
Indices: 205277--205446 Score: 135
Period size: 43 Copynumber: 4.2 Consensus size: 42
205267 TTGTATGTCA
* * * *
205277 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
205320 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
205358 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
*
205396 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
205439 TCAGGACT
1 TCAGGACT
205447 TTTGATGGAA
Statistics
Matches: 98, Mismatches: 16, Indels: 26
0.70 0.11 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 20 0.20
39 5 0.05
41 1 0.01
42 4 0.04
43 51 0.52
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 204777 -- 205276
TACTCACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTATTGAAAGGTC
AATACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTTTTTGAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 205447 -- 205946
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
Found at i:205661 original size:43 final size:43
Alignment explanation
Indices: 205613--205740 Score: 186
Period size: 43 Copynumber: 3.0 Consensus size: 43
205603 ATTAGTACTC
* *
205613 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
*
205656 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
* * *
205699 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACT
205741 GATTCTTCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 5 0.06
43 73 0.94
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTA
Left flanking sequence: Indices 205113 -- 205612
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 205741 -- 206240
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCAT
CAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAG
ATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACC
TTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGC
AATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTA
CTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCA
Found at i:205697 original size:19 final size:19
Alignment explanation
Indices: 205627--205697 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
205617 TATCAAAAAG
* *
205627 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
205646 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
205669 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
205689 GTCAGGACT
1 GTCAAGACT
205698 AACCTTACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
19 17 0.43
20 5 0.12
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 205127 -- 205626
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 205698 -- 206197
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
Found at i:205720 original size:86 final size:86
Alignment explanation
Indices: 205613--205783 Score: 213
Period size: 86 Copynumber: 2.0 Consensus size: 86
205603 ATTAGTACTC
* * *
205613 ACCTTATCAAAAAGGTCAAGACTGTATTTCACA-GTCAGGACTGA-CCTTATCAAAAAGGTCAAG
1 ACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAGGTCAGGACTGATCCTTAT-AAAAAGGTCAAG
205676 ACTGTCTTTCAAA-GTCAGGACTA
64 ACTGTC-TTCAAAGGTCAGGACTA
* * * **
205699 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGAC
1 ACCTTACCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTGATCCTTATAAAAAGGTCAAGAC
*
205764 TGTCTTGAAAGGTCAGGACT
66 TGTCTTCAAAGGTCAGGACT
205784 GATTCTTCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
85 9 0.12
86 60 0.82
87 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (86 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTGATCCTTATAAAAAGGTCAAGAC
TGTCTTCAAAGGTCAGGACTA
Left flanking sequence: Indices 205113 -- 205612
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 205784 -- 206283
GATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTG
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAA
Found at i:205733 original size:19 final size:19
Alignment explanation
Indices: 205709--205823 Score: 92
Period size: 24 Copynumber: 5.7 Consensus size: 19
205699 ACCTTACCAA
205709 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
205728 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
205752 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
205771 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
205795 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
205811 AAAGGTCAGGACT
1 AAAGGTCAAGACT
205824 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 13 0.16
17 2 0.03
19 31 0.39
24 34 0.43
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 205209 -- 205708
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 205824 -- 206323
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:205752 original size:24 final size:24
Alignment explanation
Indices: 205723--205807 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
205713 GTCAAGACTG
*
205723 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
205747 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAAGACTGATTCT
*
205766 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
205790 TCTTGAAAGGTCAAGACT
1 TCTTGAAAGGTCAAGACT
205808 CTGAAAGGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 18 0.34
24 35 0.66
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAAGACTGATTCT
Left flanking sequence: Indices 205223 -- 205722
GCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 205808 -- 206307
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAA
TTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTC
Found at i:205756 original size:43 final size:43
Alignment explanation
Indices: 205666--205823 Score: 209
Period size: 43 Copynumber: 3.7 Consensus size: 43
205656 ACCTTATCAA
* ** ***
205666 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
205709 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
205752 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
205795 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
205824 AATGAGAATG
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
40 15 0.14
41 2 0.02
42 5 0.05
43 81 0.76
44 4 0.04
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 205166 -- 205665
GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAA
GGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATC
AAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAA
Right flanking sequence: Indices 205824 -- 206323
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:205814 original size:16 final size:16
Alignment explanation
Indices: 205793--205823 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
205783 TGATTCTTCT
205793 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
205809 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
205824 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 205293 -- 205792
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 205824 -- 206323
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAG
Found at i:205933 original size:43 final size:42
Alignment explanation
Indices: 205870--206039 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
205860 TTGTATGTCA
* * *
205870 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
205913 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
205951 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
205989 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
206032 TCAGGACT
1 TCAGGACT
206040 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 205370 -- 205869
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGA
AAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGA
CCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGAC
TGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 206040 -- 206539
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGA
Found at i:206018 original size:76 final size:78
Alignment explanation
Indices: 205892--206332 Score: 295
Period size: 76 Copynumber: 5.4 Consensus size: 78
205882 TTATCAAAAA
* * *
205892 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
205955 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
205968 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
* * ***
206033 CAGGACT-TTTGATGGAA
63 CAGGACTGATT-CT-TCT
* * ** * * * * *
206050 GGACAGGAC-CAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGA
1 GGTCAAGACTGTATTTCAA----A-G---TCAGGACTAACCTTACC---AA---AAAGGTCAAGA
* * *
206114 CTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
52 CTGTCTTG-AATCAGGACTGA--TTCTTC----T
* * *
206147 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
206210 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
206223 GGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
206288 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
* *
206304 GGTCAAGACTGT-CTTGAAAGGTCAGGACT
1 GGTCAAGACTGTATTTCAAA-GTCAGGACT
206333 GATTATGGAA
Statistics
Matches: 281, Mismatches: 48, Indels: 67
0.71 0.12 0.17
Matches are distributed among these distances:
76 102 0.36
77 4 0.01
79 4 0.01
80 8 0.03
81 62 0.22
82 7 0.02
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
96 2 0.01
97 8 0.03
98 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 205392 -- 205891
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 206333 -- 206832
GATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACT
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
ACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAC
AGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGG
ACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAAT
TGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGAC
TGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
Found at i:206149 original size:41 final size:43
Alignment explanation
Indices: 206103--206294 Score: 142
Period size: 43 Copynumber: 4.7 Consensus size: 43
206093 CCAAAAATGG
* * * *
206103 AAAGGTCAAGACTGTC-TTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
206144 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
* * * **
206187 AAAGATCAAGACTATC--T--GA-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACT-AACCTTACCAA
* * * *
206222 --TGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
*
206263 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
206295 GATTCTTCTG
Statistics
Matches: 114, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
33 10 0.09
35 1 0.01
37 4 0.04
38 16 0.14
39 6 0.05
41 17 0.15
42 9 0.08
43 51 0.45
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Left flanking sequence: Indices 205603 -- 206102
ATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAA
AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 206295 -- 206794
GATTCTTCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCAT
TAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
GGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACC
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
Found at i:206248 original size:38 final size:38
Alignment explanation
Indices: 206206--206336 Score: 156
Period size: 38 Copynumber: 3.3 Consensus size: 38
206196 GACTATCTGA
* **
206206 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
* *
206244 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTGAAAGG
206287 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
206325 TCAGGACTGATT
1 TCAGGACTGATT
206337 ATGGAAGGAC
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
39 1 0.01
42 1 0.01
43 28 0.35
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (38 bp):
TCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGG
Left flanking sequence: Indices 205706 -- 206205
CAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGAT
TGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
Right flanking sequence: Indices 206337 -- 206836
ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATT
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
TACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCT
Found at i:206287 original size:19 final size:19
Alignment explanation
Indices: 206263--206333 Score: 74
Period size: 19 Copynumber: 3.7 Consensus size: 19
206253 ACCTTACCAA
206263 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
206282 AAAGGTCAGGACTGATTCTT-
1 AAAGGTCAAGACTG--TCTTG
**
206302 -CTGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
206320 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
206334 ATTATGGAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
19 33 0.80
21 4 0.10
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 205763 -- 206262
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 206334 -- 206833
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAA
Found at i:206474 original size:43 final size:43
Alignment explanation
Indices: 206411--206566 Score: 118
Period size: 43 Copynumber: 3.9 Consensus size: 43
206401 TTGTATGTCA
* * * *
206411 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
* *
206454 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC--T--GA-
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
** * * *
206492 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
*
206530 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTT
1 TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTT
206567 GAAAGGTCAG
Statistics
Matches: 82, Mismatches: 19, Indels: 24
0.66 0.15 0.19
Matches are distributed among these distances:
33 10 0.12
35 1 0.01
37 5 0.06
38 16 0.20
39 6 0.07
41 1 0.01
43 43 0.52
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TCAGGACTAACCTTACCAAAAAGATCAAGACTGTCTTTCACAG
Left flanking sequence: Indices 205911 -- 206410
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTT
TTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTA
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 206567 -- 207066
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGG
ACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGG
TCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCA
GGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGAC
TAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAA
Found at i:206795 original size:43 final size:43
Alignment explanation
Indices: 206747--207302 Score: 244
Period size: 43 Copynumber: 13.0 Consensus size: 43
206737 ATTAGTACTC
*
206747 ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * *
206790 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * *
206833 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
* * ** * *
206876 ATTCTTCT-TGAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
* * ** * *
206919 ATTCTTCT-TGAAAGGTCAAGACTCTGA----AAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGT-ATTTCAAAGTCAGGAC---TG
** * * *** * ** * * *
206962 AGAATGATTGAGGAATGACCATCAAGACT-CATTTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACTGTATTTCAAAG---TCAGGACTG
* *
207013 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * **
207056 ACCTTACCAAAAAGATCAAGAC--TA--TCTGA-TCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * *
207094 A--TTCTTC----TGGTCAAGACTGTATTTCACAGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * *
207132 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
* * ** * * *
207175 A-TTTTTCTTGAAAGGTCAAGACTGT-CTTGAAA-TCAGTACTG
1 ACCTTATC-AAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* *
207216 ACCTTATCAAAAAGGTCAATACTGTATTTCAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
* * *
207259 ACCTTACCAAAAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTATTTCAAA-GTCAGGACTG
207302 A
1 A
207303 TTCTTCTTGA
Statistics
Matches: 393, Mismatches: 81, Indels: 78
0.71 0.15 0.14
Matches are distributed among these distances:
33 8 0.02
35 2 0.01
36 2 0.01
37 4 0.01
38 19 0.05
39 4 0.01
40 10 0.03
41 26 0.07
42 23 0.06
43 250 0.64
44 4 0.01
45 9 0.02
46 5 0.01
47 4 0.01
49 11 0.03
50 2 0.01
51 4 0.01
54 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTATTTCAAAGTCAGGACTG
Left flanking sequence: Indices 206247 -- 206746
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 207303 -- 207802
TTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACT
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGC
Found at i:206831 original size:19 final size:19
Alignment explanation
Indices: 206761--206831 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
206751 TATCAAAAAG
*
206761 GTCAAGACTGTATTTCACA
1 GTCAAGACTGTCTTTCACA
* * *
206780 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--ACA
206803 GGTCAAGACTGTCTTTCACA
1 -GTCAAGACTGTCTTTCACA
*
206823 GTCAGGACT
1 GTCAAGACT
206832 AACCTTACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 2 0.05
22 2 0.05
23 5 0.13
24 9 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCACA
Left flanking sequence: Indices 206261 -- 206760
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 206832 -- 207331
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTA
TCAAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
Found at i:206867 original size:19 final size:19
Alignment explanation
Indices: 206843--206957 Score: 92
Period size: 24 Copynumber: 5.7 Consensus size: 19
206833 ACCTTACCAA
206843 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
206862 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
206886 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
206905 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
206929 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
206945 AAAGGTCAGGACT
1 AAAGGTCAAGACT
206958 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 13 0.16
17 2 0.03
19 31 0.39
24 34 0.43
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 206343 -- 206842
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 206958 -- 207457
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
Found at i:206886 original size:24 final size:24
Alignment explanation
Indices: 206857--206941 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
206847 GTCAAGACTG
*
206857 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
206881 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAAGACTGATTCT
*
206900 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAAGACTGATTCT
206924 TCTTGAAAGGTCAAGACT
1 TCTTGAAAGGTCAAGACT
206942 CTGAAAGGTC
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 18 0.34
24 35 0.66
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAAGACTGATTCT
Left flanking sequence: Indices 206357 -- 206856
GCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCAC
CTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTA
TCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAA
GATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGC
CATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCT
TCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 206942 -- 207441
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
Found at i:206948 original size:16 final size:16
Alignment explanation
Indices: 206927--206957 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
206917 TGATTCTTCT
206927 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
206943 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
206958 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 206427 -- 206926
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 206958 -- 207457
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGAC
CTTATCAAAAAGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATT
CTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTA
Found at i:207269 original size:127 final size:127
Alignment explanation
Indices: 207102--207333 Score: 430
Period size: 127 Copynumber: 1.8 Consensus size: 127
207092 TGATTCTTCT
207102 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
*
207167 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
*
207229 GGTCAATACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
207293 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
65 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
207334 GGTCAGGACT
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
126 1 0.01
127 101 0.99
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (127 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Left flanking sequence: Indices 206602 -- 207101
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 207334 -- 207833
GGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTC
ATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATC
AGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGT
CAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
Found at i:207312 original size:24 final size:24
Alignment explanation
Indices: 207283--207367 Score: 108
Period size: 24 Copynumber: 3.8 Consensus size: 24
207273 GTCAAGACTG
207283 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
207307 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
207326 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
207350 TCTGGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
207368 CTTTTGAAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
19 17 0.33
24 35 0.67
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 206783 -- 207282
AGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAT
GACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATAC
TGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 207368 -- 207867
CTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCT
TGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTC
ACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAA
ACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTAC
Found at i:207316 original size:43 final size:43
Alignment explanation
Indices: 206843--207386 Score: 297
Period size: 43 Copynumber: 12.7 Consensus size: 43
206833 ACCTTACCAA
206843 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
206886 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*** **
206929 AAAGGTCAAGAC--TC-TGAAAGGTCAGGACTAATGAGAATGATTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGAC---TGATTCTTCTTG
* * * * * * * * * **
206972 AGGAATGACCATCAAGACTCAT-TTGTATGTCATCAGTACTCA-CCTTATCAA
1 A--AA-G---GTCAAGACT-GTCTTGAAAG--GTCAGGACTGATTCTTCT-TG
* ** ***
207023 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
* *
207066 AAAGATCAAGACTATC-TG--A--TCAGGACTGATTCTTC-T-
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * * ***
207102 ---GGTCAAGACTGTATTTCACA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGT-CTTGAAAGGTCAGGACTGATTCTT-CTTG
*
207142 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * **
207185 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TG
* * ** * ***
207226 AAAGGTCAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
207269 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* *
207312 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * *
207355 AAAGGTCAGGACTCTTTTGAAAGGTCAAGACT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
207387 CATTTGTATG
Statistics
Matches: 390, Mismatches: 72, Indels: 78
0.72 0.13 0.14
Matches are distributed among these distances:
33 10 0.03
35 1 0.00
37 4 0.01
38 20 0.05
39 5 0.01
40 17 0.04
41 30 0.08
42 5 0.01
43 251 0.64
44 6 0.02
45 10 0.03
46 4 0.01
48 1 0.00
49 9 0.02
50 3 0.01
51 3 0.01
52 5 0.01
54 6 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 206343 -- 206842
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 207387 -- 207886
CATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGAC
TGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTC
TTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTC
ACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGC
Found at i:207368 original size:24 final size:22
Alignment explanation
Indices: 207285--207390 Score: 98
Period size: 24 Copynumber: 4.9 Consensus size: 22
207275 CAAGACTGTC
*
207285 TTGAAAGGTCAGGACTGATTCTT
1 TTGAAAGGTCAGGACTCATTC-T
* *
207308 CTTGAAAGGTCAAGACT--GTC-
1 -TTGAAAGGTCAGGACTCATTCT
207328 TTGAAAGGTCAGGACTCATTCT
1 TTGAAAGGTCAGGACTCATTCT
207350 TCTGGAAAGGTCAGGACTC--T-T
1 T-T-GAAAGGTCAGGACTCATTCT
*
207371 TTGAAAGGTCAAGACTCATT
1 TTGAAAGGTCAGGACTCATT
207391 TGTATGTCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
19 29 0.41
20 1 0.01
21 5 0.07
22 4 0.06
23 1 0.01
24 30 0.43
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (22 bp):
TTGAAAGGTCAGGACTCATTCT
Left flanking sequence: Indices 206785 -- 207284
GACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGA
CCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGA
CTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
ATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTG
TATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
Right flanking sequence: Indices 207391 -- 207890
TGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCT
TACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTC
TTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
TGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTG
TACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATT
Found at i:207435 original size:150 final size:150
Alignment explanation
Indices: 207250--207526 Score: 396
Period size: 150 Copynumber: 1.8 Consensus size: 150
207240 TATTTCAAGG
* * * ***
207250 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTGA
1 TCAGGACTCACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTACCAAA
* *
207313 AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTGAAAG
64 AAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAAGACTCTCTTGAAAG
207378 GTCAAGACTCATTTGTATGTCA
129 GTCAAGACTCATTTGTATGTCA
* *
207400 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
1 TCAGGACTCACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
* * * *
207465 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA
66 GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAAGACTCTCTTGAAA
207527 TCAGTACTGA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
149 3 0.03
150 103 0.93
151 5 0.05
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (150 bp):
TCAGGACTCACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAA
GGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAAGACTCTCTTGAAAGGT
CAAGACTCATTTGTATGTCA
Left flanking sequence: Indices 206750 -- 207249
TTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGT
CTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTG
AAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTA
CTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAA
GACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGA
AATCAGTACTGACCTTATCAAAAAGGTCAATACTGTATTTCAAGG
Right flanking sequence: Indices 207527 -- 208026
TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACC
ATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCCAT
TCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAAT
Found at i:207471 original size:320 final size:320
Alignment explanation
Indices: 207102--207710 Score: 918
Period size: 320 Copynumber: 1.9 Consensus size: 320
207092 TGATTCTTCT
*
207102 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
*
207167 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGT
66 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGAT
* * ** * *
207232 CAATACTGTATTTCAAGGTCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTC
131 CAAGACTATATTGAAAGATCAGGACTGATCCTT-CCAAAAAGGTCAAGACTGTCTTTCAAA-GTC
** ***
207295 AGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAG
194 AGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAG
* *
207359 GTCAGGACTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
258 GTCAAGACTCTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
*
207422 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* ***
207487 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGAT
66 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGAT
* * ***
207552 CAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAG
131 CAAGACTATATTGAAAGATCAGGACTGATCCTTCCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
*
207617 GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTC
196 GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTC
* *
207682 AAGACTGTCTTGAAAGGTCAGGACTCATT
261 AAGACTCTCTTGAAAGGTCAAGACTCATT
207711 CTTCTTGAAA
Statistics
Matches: 258, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
319 4 0.02
320 246 0.95
321 8 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (320 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGAT
CAAGACTATATTGAAAGATCAGGACTGATCCTTCCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTC
AAGACTCTCTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Left flanking sequence: Indices 206602 -- 207101
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTCATTCTTCTGGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGT
ATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTAT
CAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 207711 -- 208210
CTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCC
ATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACT
CACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACC
AACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAATTGCAA
TGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCA
TTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCT
CGTGACGTGACGTTCCCTCACGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGATGAAAA
AGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGATTGA
Found at i:207508 original size:24 final size:23
Alignment explanation
Indices: 207476--207730 Score: 126
Period size: 24 Copynumber: 11.8 Consensus size: 23
207466 GTCAAGACTG
207476 TCTTGAAAGGTCAGGACTGATTTT
1 TCTTGAAAGGTCAGGACTGA-TTT
*
207500 TCTTGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
207519 TCTTGAAA--TCAGTACTGACCTTT
1 TCTTGAAAGGTCAGGACTGA--TTT
* *
207542 T-TTGAAAGATCAAGACT-A---
1 TCTTGAAAGGTCAGGACTGATTT
*
207560 TCTTGAAAGATCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
*
207584 TCTTGAAAGGTCAAGACTG-TCTT
1 TCTTGAAAGGTCAGGACTGAT-TT
* *
207607 TC---AAA-GTCAGGACTAACCTT
1 TCTTGAAAGGTCAGGACTGA-TTT
* *** *
207627 ACCAAAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
207646 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
* *
207670 TCTGGAAAGGTCAAGACTG----
1 TCTTGAAAGGTCAGGACTGATTT
*
207689 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATT-T
207713 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
207731 CATTGCAATT
Statistics
Matches: 176, Mismatches: 24, Indels: 62
0.67 0.09 0.24
Matches are distributed among these distances:
17 7 0.04
18 1 0.01
19 61 0.35
20 7 0.04
22 6 0.03
23 9 0.05
24 85 0.48
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (23 bp):
TCTTGAAAGGTCAGGACTGATTT
Left flanking sequence: Indices 206976 -- 207475
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAT
ACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGA
CTCTTTTGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 207731 -- 208230
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAA
CAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTCATGCTGA
CCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACCATACCAAA
AAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTTCCCTCA
CGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGATGAAAAAGAAGGCTTTGTTCTGACGT
GACATGACCTTCAAGATCAGATTGAAAGGAGTGCTTTGAAAGCCA
Found at i:207517 original size:86 final size:85
Alignment explanation
Indices: 207419--207706 Score: 416
Period size: 86 Copynumber: 3.4 Consensus size: 85
207409 ACCTTATCAA
207419 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTC-TTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
*
207484 GGTCAGGACTGATTTTTCTTG
65 GGTCAGGACTGATTCTTCTTG
* * ***** * *
207505 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAG
1 AAAGGTCAAGACTGTCTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
*
207569 ATCAGGACTGATTCTTCTTG
66 GTCAGGACTGATTCTTCTTG
*
207589 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
1 AAAGGTCAAGACTGTC-TTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
*
207654 GGTCAGGACTGATTCTTCTGG
65 GGTCAGGACTGATTCTTCTTG
*
207675 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
1 AAAGGTCAAGACTGTCTTCAAA-GTCAGGACT
207707 CATTCTTCTT
Statistics
Matches: 175, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
84 68 0.39
85 15 0.09
86 92 0.53
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (85 bp):
AAAGGTCAAGACTGTCTTCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 206919 -- 207418
ATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
TTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTATT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 207707 -- 208206
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAG
TACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCA
TACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAATT
GCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTAT
GCCATTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTT
TGCTCGTGACGTGACGTTCCCTCACGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGATG
AAAAAGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGA
Found at i:207712 original size:43 final size:43
Alignment explanation
Indices: 207419--207730 Score: 343
Period size: 43 Copynumber: 7.3 Consensus size: 43
207409 ACCTTATCAA
* * ***
207419 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTGA-CCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
*
207462 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
207505 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGACCTT-TT-TTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA--TTCTTCTTG
* * *
207546 AAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* ** ***
207589 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
*
207632 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
207675 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
207718 AAAGGTCAGGACT
1 AAAGGTCAAGACT
207731 CATTGCAATT
Statistics
Matches: 229, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
41 34 0.15
42 18 0.08
43 166 0.72
44 11 0.05
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 206919 -- 207418
ATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCAT
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTT
TTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAATACTGTATT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTTTG
AAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
Right flanking sequence: Indices 207731 -- 208230
CATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAA
CAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCA
TTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGTCACCATACCAAAA
CAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAATTGCAATGAGATGCCATTCATGCTGA
CCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACCATACCAAA
AAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTTCCCTCA
CGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGATGAAAAAGAAGGCTTTGTTCTGACGT
GACATGACCTTCAAGATCAGATTGAAAGGAGTGCTTTGAAAGCCA
Found at i:207774 original size:28 final size:28
Alignment explanation
Indices: 207742--207899 Score: 275
Period size: 28 Copynumber: 5.6 Consensus size: 28
207732 ATTGCAATTC
207742 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
207770 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
207798 AATGCCATTAGTACTCACT-TGACAAACA
1 AATGCCATTAGTACTCACTGT-ACAAACA
207826 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
207854 AATGCCATTAGTACTCACTGTACAAACA
1 AATGCCATTAGTACTCACTGTACAAACA
*
207882 AATGCCATTAGTGCTCAC
1 AATGCCATTAGTACTCAC
207900 CATACCAACA
Statistics
Matches: 126, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
27 1 0.01
28 123 0.98
29 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.25
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTGTACAAACA
Left flanking sequence: Indices 207242 -- 207741
TTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCT
TCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTGGAAAGGTCAGGACTCTTT
TGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTC
TTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAA
AGATCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 207900 -- 208399
CATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGCAATTGTATGCCTTCCATAA
TTGCAATGAGATGCCATTCATGCTGACCATACAACAAATTGTATGCCTTCAAGAATTGCAATTGT
ATGCCATTAGTGCTGACCATACCAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGC
TTTGCTCGTGACGTGACGTTCCCTCACGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGA
TGAAAAAGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGATTGAAAGGAGTGCTTTGA
AAGCCAAAGCGAAGCATTCAAAGCTGATGGTAGGCACTAATGCCATTCAATTCAAAGTTGCGAGT
GCTTTGCTCGTTTGATCGCGGAGTCAACTGAAACAACGAGCGTATAGTGTAGACGACACTTTTCG
TAAAGAGCTTGACGAAGCGAGCGAGTTTGCGGGTGGAGCGGAAAG
Found at i:208012 original size:55 final size:55
Alignment explanation
Indices: 207946--208051 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
207936 TCCCAATGGC
* *
207946 AATTGTATGCCTTCCATAATTGCAA-TGAGATGCCATTCA-TGCTGACCATACAACA
1 AATTGTATGCCTTCAAGAATTGCAATTG-GATGCCATT-AGTGCTGACCATACAACA
*
208001 AATTGTATGCCTTCAAGAATTGCAATTGTATGCCATTAGTGCTGACCATAC
1 AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATAC
208052 CAAAAAGCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
54 1 0.02
55 43 0.93
56 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (55 bp):
AATTGTATGCCTTCAAGAATTGCAATTGGATGCCATTAGTGCTGACCATACAACA
Left flanking sequence: Indices 207446 -- 207945
GGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGT
CAAGACTGTCTTGAAATCAGTACTGACCTTTTTTGAAAGATCAAGACTATCTTGAAAGATCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAA
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAA
ATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTA
GTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACC
ATACCAACATGTCACCATACCAAAACAATGCCATTTCCCAATGGC
Right flanking sequence: Indices 208052 -- 208551
CAAAAAGCTCATACTTTGAAGAAGCACTCGCAAAGCGTAGGGCTTTGCTCGTGACGTGACGTTCC
CTCACGCAATTCAAAGCGAGGGCTTTTTCACTCATTTTTGAGATGAAAAAGAAGGCTTTGTTCTG
ACGTGACATGACCTTCAAGATCAGATTGAAAGGAGTGCTTTGAAAGCCAAAGCGAAGCATTCAAA
GCTGATGGTAGGCACTAATGCCATTCAATTCAAAGTTGCGAGTGCTTTGCTCGTTTGATCGCGGA
GTCAACTGAAACAACGAGCGTATAGTGTAGACGACACTTTTCGTAAAGAGCTTGACGAAGCGAGC
GAGTTTGCGGGTGGAGCGGAAAGCGACTAAACTAAGAAAGAAGCCACTCGCAGTGTCTTCGCTCT
TACTGCTCGGCTCACTCAGTGCTTTGCTTACTCACTTCGCTTCACTTCCTCCTTATGGCTTCTGG
CGACTAGCTTCTACCAAGGAGGCATGATGGGTTAGGTATGCGTCA
Found at i:209958 original size:55 final size:55
Alignment explanation
Indices: 209892--209997 Score: 153
Period size: 55 Copynumber: 1.9 Consensus size: 55
209882 GAGCTTTTTG
* *
209892 GTATGGTCAGCACT-AATGGCATAC-AATTGCAATTCTTGAAGGCATACAATTTGTT
1 GTATGGTCAGCA-TGAATGGCAT-CTAATTGCAATTATGGAAGGCATACAATTTGTT
*
209947 GTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATT
1 GTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGAAGGCATACAATT
209998 GCCATTGGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
54 2 0.04
55 44 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (55 bp):
GTATGGTCAGCATGAATGGCATCTAATTGCAATTATGGAAGGCATACAATTTGTT
Left flanking sequence: Indices 209392 -- 209891
CGTTTTCAAAAGCTTCCTGTCGAACCGGCTCCTATTTCAATCCGTGCTGGACCGATCGATATACC
AATAATTAAGTCTTCCGTCCACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTG
GTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCCAACTTTGCTAACTCCCCCTTTTCA
ACCCGTATCTTGTTCGTTCTGGAAACACGTCTTCTTATTCCATCTTTTCCCGAATCTCCCTTAAC
GGAAGAAATAGAAGCTCGAGAAGGAAGACCTGCTACCTAGTTCACTCGCTATTCGTTCCAAAACT
TCGGACATGGGAGGATCGGACGGCTGGAAAAATCTATCCCAATCCTTTCTTTCGTCGCTACTTTG
ATTCAAAAGGTAACCTGAGTGACGGAAATGAGCAAAGCCCCCAGCGTCACGTCACGTCACGAGCA
AAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTG
Right flanking sequence: Indices 209998 -- 210497
GCCATTGGGAAATGGCATTGTTTTGGTATGGTGAGTACTCATTATGGACAGGACTACTTTCCGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCA
AAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTT
GAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATA
Found at i:210195 original size:43 final size:42
Alignment explanation
Indices: 210132--210306 Score: 164
Period size: 43 Copynumber: 4.2 Consensus size: 42
210122 TTGTATGTCA
* * * *
210132 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
210175 TCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * *
210217 ATCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 -TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
*
210256 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
210299 TCAGGACT
1 TCAGGACT
210307 TTTGATGGAA
Statistics
Matches: 105, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
37 3 0.03
38 21 0.20
39 6 0.06
42 11 0.10
43 61 0.58
44 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 209632 -- 210131
TTTCCCGAATCTCCCTTAACGGAAGAAATAGAAGCTCGAGAAGGAAGACCTGCTACCTAGTTCAC
TCGCTATTCGTTCCAAAACTTCGGACATGGGAGGATCGGACGGCTGGAAAAATCTATCCCAATCC
TTTCTTTCGTCGCTACTTTGATTCAAAAGGTAACCTGAGTGACGGAAATGAGCAAAGCCCCCAGC
GTCACGTCACGTCACGAGCAAAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTG
GTATGGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGTCAG
CATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATTGCCATTGGGAAATGGCATTGTTTT
GGTATGGTGAGTACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 210307 -- 210806
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGT
ATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCA
ATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCT
GATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGG
Found at i:210293 original size:81 final size:81
Alignment explanation
Indices: 210154--210572 Score: 324
Period size: 81 Copynumber: 5.0 Consensus size: 81
210144 TTATCAAAAA
*
210154 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
210219 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* *
210235 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
**
210300 CAGGACT--TT-TGAT
66 CAGGACTGATTCTTCT
* * * * * * *
210313 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTGACCTTACCAAAAA--G--A--T
* * *
210376 CAAGACTGTCTTG-AA-ATCAGTACTGACCTT-ATCAAAAA
47 CAAGACTGTCTTGAAAGATCAGGACTGA--TTCTTC----T
* *
210414 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T----GAT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
210474 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * * * *
210490 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
210555 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
210571 GG
1 GG
210573 AAAGGTCAAG
Statistics
Matches: 265, Mismatches: 37, Indels: 72
0.71 0.10 0.19
Matches are distributed among these distances:
76 52 0.20
77 4 0.02
78 5 0.02
79 5 0.02
80 2 0.01
81 103 0.39
83 1 0.00
84 10 0.04
85 1 0.00
86 2 0.01
88 1 0.00
89 18 0.07
90 18 0.07
91 1 0.00
93 9 0.03
94 3 0.01
95 14 0.05
97 2 0.01
98 5 0.02
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (81 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 209654 -- 210153
AAGAAATAGAAGCTCGAGAAGGAAGACCTGCTACCTAGTTCACTCGCTATTCGTTCCAAAACTTC
GGACATGGGAGGATCGGACGGCTGGAAAAATCTATCCCAATCCTTTCTTTCGTCGCTACTTTGAT
TCAAAAGGTAACCTGAGTGACGGAAATGAGCAAAGCCCCCAGCGTCACGTCACGTCACGAGCAAA
GCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTGGTATGGTCAGCACTAATGGCAT
ACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAA
TTATGGAAGGCATACAATTGCCATTGGGAAATGGCATTGTTTTGGTATGGTGAGTACTCATTATG
GACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 210573 -- 211072
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
Found at i:210538 original size:43 final size:43
Alignment explanation
Indices: 210370--210606 Score: 142
Period size: 43 Copynumber: 5.8 Consensus size: 43
210360 CCAAAAATGG
* * * * *
210370 AAAGGTCAAGACTGT-CTTGAA-ATCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * *
210411 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* * * *
210454 AAAGATCAAGAC--TA--TC-TGATCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* *
210489 --TGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
* ** * ***
210530 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA-CCTTACCAA
* **
210573 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGA
210607 TTATGGAAGG
Statistics
Matches: 153, Mismatches: 28, Indels: 28
0.73 0.13 0.13
Matches are distributed among these distances:
33 7 0.05
35 2 0.01
37 6 0.04
38 20 0.13
39 6 0.04
41 16 0.10
42 4 0.03
43 89 0.58
44 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (43 bp):
AAAGGTCAAGACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 209870 -- 210369
TCTTCAAAGTATGAGCTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCAATTCTTGAAGGC
ATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGAAGGCATACAATTGC
CATTGGGAAATGGCATTGTTTTGGTATGGTGAGTACTCATTATGGACAGGACTACTTTCCGGTCA
AGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGT
CATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAA
AAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 210607 -- 211106
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCA
TTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGAC
CTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAG
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGAC
AGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTG
CAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAAC
Found at i:210540 original size:76 final size:79
Alignment explanation
Indices: 210414--210572 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 79
210404 TTATCAAAAA
*
210414 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
210476 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * * *
210490 GGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
210555 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
210571 GG
1 GG
210573 AAAGGTCAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
76 50 0.69
77 2 0.03
79 1 0.01
81 19 0.26
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 209914 -- 210413
ACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAA
TTATGGAAGGCATACAATTGCCATTGGGAAATGGCATTGTTTTGGTATGGTGAGTACTCATTATG
GACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTC
AAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Right flanking sequence: Indices 210573 -- 211072
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAG
GACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAG
GTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCA
AAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAA
Found at i:210554 original size:19 final size:19
Alignment explanation
Indices: 210530--210605 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
210520 ACCTTACCAA
210530 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
210549 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
210573 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
210592 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
210606 ATTATGGAAG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 210030 -- 210529
GAGTACTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 210606 -- 211105
ATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA
GTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATT
GCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACT
GACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
Found at i:210746 original size:43 final size:42
Alignment explanation
Indices: 210683--210852 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
210673 TTGTATGTCA
* * * *
210683 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTC-TTCAAAG
* *
210726 TCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
* * * * *
210764 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGATCAAGACTGT-CTTCAAAG
*
210802 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAA-G
210845 TCAGGACT
1 TCAGGACT
210853 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 20 0.21
39 5 0.05
41 1 0.01
42 4 0.04
43 50 0.52
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 210183 -- 210682
GACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGAT
GGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCA
AGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACT
AACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA
AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 210853 -- 211352
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAG
GACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTT
CACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACT
GTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTAT
Found at i:210794 original size:291 final size:292
Alignment explanation
Indices: 210275--211549 Score: 1009
Period size: 291 Copynumber: 4.3 Consensus size: 292
210265 ACCTTACCAA
* *
210275 AAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTA
** * ** * *
210340 TGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
66 TGCCATTAGTACTCACCTGACCATCAA--G--A-CTC-A-TTTGTCATGAAATCAGTACTCACCT
*
210405 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
124 TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC
*
210470 -T-GATCAGGACTGATTCTTCTGGTCAATACTGTATTTCA-AGGTCAGGACTGACCTTACCAAAA
189 TTAGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAA
210532 AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
253 AGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTCTTCTGG
210573 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGT
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTGATGGAAGGACAGGACCAATTGCAATTGT
**
210637 ATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGT-ATGTCATCAGTACTCACCTTATCA
65 ATGCCATTAGTACTCACCTGACCAT-CAAGACTCATTTGTCATGAAATCAGTACTCACCTTATCA
210701 AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-T-GA
129 AAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTAGA
*
210764 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
194 TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
**
210829 AGACTGTCTTGAAAGGTCAGGACT-TT-TGATGG
259 AGACTGTCTTGAAAGGTCAGGACTATTCTTCTGG
* * *** ** * * * *** ** * *
210861 -AAGGACAGGAC-CAATTGCAATTGT-ATG-CCATT-A-GTACTCACCTGACCAA---AAATGGA
1 AAAGGTCAAGACTGTCTTG-AAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTG-
* * * ** * * * * * *
210917 AAGGTCA--AG-ACTGTCTTGA-AAGGTCAGGACTCATTCT-TCTTGAAAGGTCAGGACTGA--T
64 TATGCCATTAGTACTCACCTGACCA--TCAAGACTCATT-TGTCATGAAA--TCAGTACTCACCT
* * * * * * * * * * * *
210975 TATGGAAGGACAGGACCAATTGCAATTGT-ATGC-CA-TTAGTACTCACCTTATCAAAAAGGTCA
124 TAT-CAA--AAAGG-TCAA--G--ACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCA
* * * * * *
211037 AGACTGTCTTTCACAGTCAGGACTGACCTT-ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
181 AGACTATC-TT-AGA-TCAGGACTGA--TTCTTC----TGGTCAAGACTGTATTTCACAGTCAGG
*
211101 ACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGG
237 ACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-ATTCTTCTGG
** * * *
211158 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA-C--TCTG-AA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACT-A---TTGATGGAAGGACAGGACCAAT-TGCAA
** * * * * * ** **
211219 AGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT-ATGTCATCAGTAC
61 TTGT-ATG-C-CATTAG--T-ACTCA--CCTGACCATCAAGACTCATTTGTCATGAAATCAGTAC
*
211283 TCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAG
118 TCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAG
*
211348 ACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCT
183 ACTATCTT---AGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCT
* * ** * ***
211413 TATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTAACCTGACCAA
245 TACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTATTCT-TCTGG
*
211462 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTA
211527 TGCCATTAGTACTCACCTGACCA
66 TGCCATTAGTACTCACCTGACCA
211550 AAAATGGAAA
Statistics
Matches: 762, Mismatches: 141, Indels: 151
0.72 0.13 0.14
Matches are distributed among these distances:
277 1 0.00
278 18 0.02
279 11 0.01
280 6 0.01
281 12 0.02
282 4 0.01
283 13 0.02
284 33 0.04
285 3 0.00
286 8 0.01
287 17 0.02
288 5 0.01
289 12 0.02
290 2 0.00
291 169 0.22
292 4 0.01
293 1 0.00
294 70 0.09
295 7 0.01
296 2 0.00
297 8 0.01
298 97 0.13
299 9 0.01
300 17 0.02
301 3 0.00
302 4 0.01
303 8 0.01
304 97 0.13
305 6 0.01
306 16 0.02
307 4 0.01
308 8 0.01
309 39 0.05
310 7 0.01
311 4 0.01
312 8 0.01
313 2 0.00
314 11 0.01
315 12 0.02
316 3 0.00
317 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (292 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTATTGATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTGACCATCAAGACTCATTTGTCATGAAATCAGTACTCACCTTATCAAA
AAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTAGATC
AGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAG
ACTGTCTTGAAAGGTCAGGACTATTCTTCTGG
Left flanking sequence: Indices 209775 -- 210274
TACTTTGATTCAAAAGGTAACCTGAGTGACGGAAATGAGCAAAGCCCCCAGCGTCACGTCACGTC
ACGAGCAAAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTGGTATGGTCAGCAC
TAATGGCATACAATTGCAATTCTTGAAGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATC
TCATTGCAATTATGGAAGGCATACAATTGCCATTGGGAAATGGCATTGTTTTGGTATGGTGAGTA
CTCATTATGGACAGGACTACTTTCCGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTG
AGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTG
TCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 211550 -- 212049
AAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCA
TTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACA
AATGTCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTC
ACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATT
GCAAATTGATGTTCATGAAAAGTGAAAAAGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGAT
CAGATTGAAAGGATCTGAAAATCTGATGAGCTAATGCCAACTATCAGATTGAAAGGAGTGCTGAT
TGAGGCAAAATGAGATTCACTATGTACCTTGATGTCCTTGAAAGGGTTGACTTTGCCCGAGATTT
TGTGAGAGTTGACAGGGGAGGGGAGAACAGCCCTGTCTGCAACTG
Found at i:211060 original size:19 final size:19
Alignment explanation
Indices: 211033--211103 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
211023 TATCAAAAAG
*
211033 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
211052 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
211075 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
211095 GTCAGGACT
1 GTCAAGACT
211104 AACCTTACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 210533 -- 211032
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
ATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGA
TGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTC
AAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAG
Right flanking sequence: Indices 211104 -- 211603
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATC
AGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAG
ACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
Found at i:211080 original size:43 final size:43
Alignment explanation
Indices: 211019--211493 Score: 293
Period size: 43 Copynumber: 11.0 Consensus size: 43
211009 ATTAGTACTC
*
211019 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
*
211062 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* *
211105 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
* * ** *
211148 ATTCTTCT-GGAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACTG
* * ** *
211191 ATTCTTCT-TGAAAGGTCAAGAC--TC--TGAAAGGTCAGGACTAATG
1 A-CCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGAC---TG
** * * *** ** * * *
211234 AGAATGATTGAGGAATGACCATCAAGAC--TCATTTGTATGTCATCAGTACTC
1 A-CCTTA-TCA--AA--AAGGTCAAGACTGTC-TTTCAAAG---TCAGGACTG
*
211285 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * * *
211328 ACCTTACCAAAAAGATCAAGACTATC-TTGAAAGATCAGGACTG
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG-TCAGGACTG
* * *
211371 A--TTCTTC----TGGTCAAGACTGTCTTTCACAGTCAGGACTG
1 ACCTT-ATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
*
211409 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTA
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
* * *
211452 ACCTGACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACT
1 ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT
211494 TTTGATGGAA
Statistics
Matches: 346, Mismatches: 57, Indels: 58
0.75 0.12 0.13
Matches are distributed among these distances:
38 21 0.06
39 7 0.02
40 16 0.05
41 4 0.01
42 16 0.05
43 235 0.68
44 4 0.01
45 8 0.02
46 4 0.01
47 5 0.01
49 12 0.03
50 2 0.01
51 3 0.01
52 3 0.01
54 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTG
Left flanking sequence: Indices 210519 -- 211018
GACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAG
GTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCA
AAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGA
TTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 211494 -- 211993
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTG
TATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATT
AGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCA
AAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGA
TGTTCATGAAAAGTGAAAAAGAAGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGATTGAA
AGGATCTGAAAATCTGATGAGCTAATGCCAACTATCAGATTGAAAGGAGTGCTGATTGAGGCAAA
ATGAGATTCACTATGTACCTTGATGTCCTTGAAAGGGTTGACTTT
Found at i:211085 original size:113 final size:116
Alignment explanation
Indices: 210840--211085 Score: 297
Period size: 119 Copynumber: 2.1 Consensus size: 116
210830 GACTGTCTTG
*
210840 AAAGGTCAGGACT-TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * **
210904 GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
66 GACC--AAA--GAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
210959 AAAGGTCAGGACTGATT-ATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
1 AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
* * * *
211023 TATC-AA-AAAGGTCAAGACTGTCTTTCACA-GTCAGGACTGA-CCTTATCAA
66 GACCAAAGAAAGGTCAAGACTGTC-TTCAAAGGTCAGGACTCATCCTTAT-AA
*
211072 AAAGGTCAAGACTG
1 AAAGGTCAGGACTG
211086 TCTTTCAAAG
Statistics
Matches: 113, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
112 4 0.04
113 39 0.35
114 4 0.04
116 2 0.02
119 62 0.55
120 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (116 bp):
AAAGGTCAGGACTGATTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAGAAAGGTCAAGACTGTCTTCAAAGGTCAGGACTCATCCTTATAA
Left flanking sequence: Indices 210340 -- 210839
TGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAATACTGTATTTCAAGGTCAGGACTGACCTTACCAAAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACA
AGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAG
GACTGACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTAT
TTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTG
Right flanking sequence: Indices 211086 -- 211585
TCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCT
GAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGAC
CTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTG
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGG
Found at i:211139 original size:19 final size:19
Alignment explanation
Indices: 211115--211229 Score: 92
Period size: 24 Copynumber: 5.7 Consensus size: 19
211105 ACCTTACCAA
211115 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
211134 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
211158 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
211177 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
211201 AAAGGTCAAGAC--TC-TG
1 AAAGGTCAAGACTGTCTTG
*
211217 AAAGGTCAGGACT
1 AAAGGTCAAGACT
211230 AATGAGAATG
Statistics
Matches: 80, Mismatches: 5, Indels: 24
0.73 0.05 0.22
Matches are distributed among these distances:
16 13 0.16
17 2 0.03
19 27 0.34
20 1 0.01
21 3 0.04
22 3 0.04
23 1 0.01
24 30 0.38
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 210615 -- 211114
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 211230 -- 211729
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCA
ATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGT
CATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATA
Found at i:211160 original size:24 final size:23
Alignment explanation
Indices: 211115--211213 Score: 106
Period size: 24 Copynumber: 4.6 Consensus size: 23
211105 ACCTTACCAA
211115 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
211134 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTGATTCTTCT-G
211158 AAAGGTCAAGACTG--TC-T-TG
1 AAAGGTCAAGACTGATTCTTCTG
*
211177 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGATTCTTC-TG
211201 AAAGGTCAAGACT
1 AAAGGTCAAGACT
211214 CTGAAAGGTC
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
19 27 0.41
20 1 0.02
21 5 0.08
22 4 0.06
23 1 0.02
24 28 0.42
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (23 bp):
AAAGGTCAAGACTGATTCTTCTG
Left flanking sequence: Indices 210615 -- 211114
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCATACAAGACTCATTTGTATG
TCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAA
AAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACT
GACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTA
TGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATC
AAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
Right flanking sequence: Indices 211214 -- 211713
CTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGAT
CAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTG
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTAC
TCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
ATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGCC
Found at i:211220 original size:16 final size:16
Alignment explanation
Indices: 211199--211229 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
211189 TGATTCTTCT
211199 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
211215 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
211230 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 210699 -- 211198
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGATCA
AGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTA
GTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
AAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTT
ATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 211230 -- 211729
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAA
GATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGT
CAAGACTGTCTTTCAAAGTCAGGACTAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCA
ATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGT
CATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATA
Found at i:211402 original size:19 final size:19
Alignment explanation
Indices: 211380--211450 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
211370 GATTCTTCTG
*
211380 GTCAAGACTGTCTTTCACA
1 GTCAAGACTGTCTTTCAAA
* *
211399 GTCAGGACTGACCTTATCAAAAA
1 GTCAAGACTG-TCTT-TC--AAA
211422 GGTCAAGACTGTCTTTCAAA
1 -GTCAAGACTGTCTTTCAAA
*
211442 GTCAGGACT
1 GTCAAGACT
211451 AACCTGACCA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
19 17 0.41
20 6 0.15
21 2 0.05
22 2 0.05
23 5 0.12
24 9 0.22
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (19 bp):
GTCAAGACTGTCTTTCAAA
Left flanking sequence: Indices 210880 -- 211379
ATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCA
TTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAA
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAG
GTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGT
ATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTAC
CAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTG
Right flanking sequence: Indices 211451 -- 211950
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAAT
GCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACA
ACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCATGAAAAGTGAAAAAGA
AGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGATTGAAAGGATCTGAAAATCTGATGAGC
TAATGCCAACTATCAGATTGAAAGGAGTGCTGATTGAGGCAAAAT
Found at i:211431 original size:24 final size:24
Alignment explanation
Indices: 211399--211475 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 24
211389 GTCTTTCACA
*
211399 GTCAGGACTGACCTTATCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
*
211423 GTCAAGACTG-TCTT-TC--AAA-
1 GTCAAGACTGACCTTATCAAAAAG
* * * *
211442 GTCAGGACTAACCTGACCAAAAAG
1 GTCAAGACTGACCTTATCAAAAAG
211466 GTCAAGACTG
1 GTCAAGACTG
211476 TCTTGAAAGG
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
19 8 0.21
20 5 0.13
21 1 0.03
22 2 0.05
23 6 0.15
24 17 0.44
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (24 bp):
GTCAAGACTGACCTTATCAAAAAG
Left flanking sequence: Indices 210899 -- 211398
CACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGG
TCAGGACTGATTATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
AGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTC
AGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC
TTGAAAGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
Right flanking sequence: Indices 211476 -- 211975
TCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
ACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGAT
GAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACT
GTACAAACAAATGTCATTAGTACTCACTGTACAAACAAATGCCATTAGTGCTCACCATACCAACA
TGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCTTCCAAAATCC
ATGACAATTGCAAATTGATGTTCATGAAAAGTGAAAAAGAAGGCTTTGTTCTGACGTGACATGAC
CTTCAAGATCAGATTGAAAGGATCTGAAAATCTGATGAGCTAATGCCAACTATCAGATTGAAAGG
AGTGCTGATTGAGGCAAAATGAGATTCACTATGTACCTTGATGTC
Found at i:211447 original size:81 final size:81
Alignment explanation
Indices: 211298--211450 Score: 254
Period size: 81 Copynumber: 1.9 Consensus size: 81
211288 TTATCAAAAA
*
211298 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGAT
1 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTCAAAGAT
211363 CAGGACTGATTCTTCT
66 CAGGACTGATTCTTCT
* * *
211379 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG-
1 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATC-TTCAAAGA
211443 TCAGGACT
65 TCAGGACT
211451 AACCTGACCA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
81 61 0.91
82 6 0.09
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (81 bp):
GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTCAAAGAT
CAGGACTGATTCTTCT
Left flanking sequence: Indices 210798 -- 211297
ACAGTCAGGACTGACCTTACCAAAAAGATCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAA
GGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAGAC
TGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTGATTATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGG
ACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGA
CTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 211451 -- 211950
AACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAA
TTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGTATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTGTACAAACAAATGTCATTAGTACTCACTGTACAAACAAAT
GCCATTAGTGCTCACCATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACA
ACAAATTGTATGCCTTCCAAAATCCATGACAATTGCAAATTGATGTTCATGAAAAGTGAAAAAGA
AGGCTTTGTTCTGACGTGACATGACCTTCAAGATCAGATTGAAAGGATCTGAAAATCTGATGAGC
TAATGCCAACTATCAGATTGAAAGGAGTGCTGATTGAGGCAAAAT
Found at i:211735 original size:28 final size:28
Alignment explanation
Indices: 211625--211725 Score: 184
Period size: 28 Copynumber: 3.6 Consensus size: 28
211615 TTGCAATTGT
211625 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
211653 ATGCCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
211681 ATGTCATTAGTACTCACTGTACAAACAA
1 ATGCCATTAGTACTCACTGTACAAACAA
*
211709 ATGCCATTAGTGCTCAC
1 ATGCCATTAGTACTCAC
211726 CATACCAACA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.27
Consensus pattern (28 bp):
ATGCCATTAGTACTCACTGTACAAACAA
Left flanking sequence: Indices 211125 -- 211624
ACTGTCTTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
GATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCA
TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGT
CAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAAGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGAC
TAACCTGACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTTAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGATGAAGACTCATTGCAATTGT
Right flanking sequence: Indices 211726 -- 212225
CATACCAACATGAGTACTCACTATACCAAAAAGATGCCATTTTCCATACAACAAATTGTATGCCT
TCCAAAATCCATGACAATTGCAAATTGATGTTCATGAAAAGTGAAAAAGAAGGCTTTGTTCTGAC
GTGACATGACCTTCAAGATCAGATTGAAAGGATCTGAAAATCTGATGAGCTAATGCCAACTATCA
GATTGAAAGGAGTGCTGATTGAGGCAAAATGAGATTCACTATGTACCTTGATGTCCTTGAAAGGG
TTGACTTTGCCCGAGATTTTGTGAGAGTTGACAGGGGAGGGGAGAACAGCCCTGTCTGCAACTGA
GATTCCAAAGGCGAACTTCCATAGGTGCTATCTATGACTCAGGAACCAAAAAGACCAACCAAGGC
AAAGACCTCATTCATCACTTGCCGCTAGTCCAAGGCAAAGATTAGATACCTTCTTTCGGAGGCTC
ATGCTACCTTTACAAAAAGAAGGACGCAACACATCCACCTCTTCT
Found at i:218312 original size:16 final size:16
Alignment explanation
Indices: 218291--218321 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
218281 AGGACTTGAT
218291 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
218307 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
218322 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 217791 -- 218290
TATCCTTATCAGACAAGGTGACTCCGGCACCTCACATCTCAAAGAGGTCATTTCTGATATTGACA
GCAAGCTTTGTCTCATCTTCATGAGCAGCCACCTGCTTTGCCCCAAAGCAGTCACTGCCCCCAAA
TCACCATCATCAACGGGAAGTTCAAGGTCTCAAGCTCGGGCCCTGTGTTGGGTTGGGCCCATCAT
ACTCTTTGAACATATATATGTTTTCCACGCTTGTTGAGCGGTCAAACTACTTGTAACTGCGGATG
GGCACAGTATGAATTCAACTTGCTTTCTAAAGCCCCAACCAACCGAAGCCCCAATCGTAACCCGA
CTGGCCCTAGAAAGAAAGAGAGATCTTTCATGTAATGGAAATTATGGAAAGGTTATGGAATCTTG
AAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTCTTTTTGAAA
AGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGAT
Right flanking sequence: Indices 218322 -- 218821
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACT
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATC
Found at i:218442 original size:16 final size:16
Alignment explanation
Indices: 218421--218451 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
218411 AGGACTTGAT
218421 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
218437 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
218452 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 217921 -- 218420
TCACCATCATCAACGGGAAGTTCAAGGTCTCAAGCTCGGGCCCTGTGTTGGGTTGGGCCCATCAT
ACTCTTTGAACATATATATGTTTTCCACGCTTGTTGAGCGGTCAAACTACTTGTAACTGCGGATG
GGCACAGTATGAATTCAACTTGCTTTCTAAAGCCCCAACCAACCGAAGCCCCAATCGTAACCCGA
CTGGCCCTAGAAAGAAAGAGAGATCTTTCATGTAATGGAAATTATGGAAAGGTTATGGAATCTTG
AAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTCTTTTTGAAA
AGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAA
AGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTT
GTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGAT
Right flanking sequence: Indices 218452 -- 218951
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
Found at i:218561 original size:43 final size:42
Alignment explanation
Indices: 218498--218667 Score: 126
Period size: 43 Copynumber: 4.2 Consensus size: 42
218488 TTGTATGTCA
* * *
218498 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
218541 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * *
218579 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* *
218617 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
218660 TCAGGACT
1 TCAGGACT
218668 TTTGATGGAA
Statistics
Matches: 96, Mismatches: 18, Indels: 26
0.69 0.13 0.19
Matches are distributed among these distances:
33 11 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 52 0.54
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 217998 -- 218497
TATATATGTTTTCCACGCTTGTTGAGCGGTCAAACTACTTGTAACTGCGGATGGGCACAGTATGA
ATTCAACTTGCTTTCTAAAGCCCCAACCAACCGAAGCCCCAATCGTAACCCGACTGGCCCTAGAA
AGAAAGAGAGATCTTTCATGTAATGGAAATTATGGAAAGGTTATGGAATCTTGAAAGGTCAGGAC
TCTCTGGAAAGGTCAGGACTAATGAGAATTGTATGTCATTAGTCTTTTTGAAAAGACAAAACAAA
ATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAG
TACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 218668 -- 219167
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTAAT
TATAATTATAGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAA
TGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAG
TACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACA
Found at i:218646 original size:76 final size:78
Alignment explanation
Indices: 218520--218933 Score: 290
Period size: 76 Copynumber: 5.0 Consensus size: 78
218510 TTATCAAAAA
* *
218520 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
218583 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
218596 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
**
218661 CAGGACT--TT-TGAT
63 CAGGACTGATTCTTCT
* * * * * * *
218674 GG--AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGT
1 GGTCAA-GAC-TG-TC--TTTCAA----A-G---TCAGGACTAACCTTACC---AA---AAAGGT
* * *
218737 CAAGACTGTCTTGAAATCAGTACTGACCTT-ATCAAAAA
47 CAAGACTGTCTTG-AATCAGGACTGA--TTCTTC----T
* *
218775 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-ATCAG
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
218838 GACTGATTCTTCT
66 GACTGATTCTTCT
* *
218851 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTG-AA--T
218916 CAGGACTGATTCTTCT
63 CAGGACTGATTCTTCT
218932 GG
1 GG
218934 AAAGGTCAAG
Statistics
Matches: 263, Mismatches: 35, Indels: 75
0.71 0.09 0.20
Matches are distributed among these distances:
76 106 0.40
77 7 0.03
78 5 0.02
79 7 0.03
80 2 0.01
81 41 0.16
83 2 0.01
84 14 0.05
85 1 0.00
86 1 0.00
87 2 0.01
89 13 0.05
90 13 0.05
92 2 0.01
93 8 0.03
94 1 0.00
95 22 0.08
97 2 0.01
98 5 0.02
100 1 0.00
101 3 0.01
102 3 0.01
103 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (78 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAATCAG
GACTGATTCTTCT
Left flanking sequence: Indices 218020 -- 218519
TGAGCGGTCAAACTACTTGTAACTGCGGATGGGCACAGTATGAATTCAACTTGCTTTCTAAAGCC
CCAACCAACCGAAGCCCCAATCGTAACCCGACTGGCCCTAGAAAGAAAGAGAGATCTTTCATGTA
ATGGAAATTATGGAAAGGTTATGGAATCTTGAAAGGTCAGGACTCTCTGGAAAGGTCAGGACTAA
TGAGAATTGTATGTCATTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGT
TAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGT
CAGAACTCACCTGACCATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGT
CAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGAC
CATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 218934 -- 219433
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTAATTATAAT
TATAGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTATACCAA
CATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGT
GCTGACCATACAAAAAATGGCAATTGTATGCCATTAGTGTTGACCCTGACTTCAAGAAATCGTCA
CAAATCTGGTTGGAGGTAATGAAGGAAGGGAAGGTGGGGAAGGAAGCGAATGGAGTCTTCCTTCT
ATATCTAGACTCAGTCATTTTCACAACGGAGTCTGACTGAACCGC
Found at i:218915 original size:19 final size:19
Alignment explanation
Indices: 218891--218966 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
218881 ACCTTACCAA
218891 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
218910 AAAGGTCAGGACTGATTCTTCTGG
1 AAAGGTCAAGACTG--TC-T-T-G
218934 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
218953 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
218967 ATTCTTCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 27 0.55
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 14 0.29
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 218391 -- 218890
TCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 218967 -- 219466
ATTCTTCTTGAAAGGTCAGGACTAATTATAATTATAGAAAGGTCAGGACTCATTGCAATTCAATG
CCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTA
CTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTA
CAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATT
AGTGCTCCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAAATGGCAATTGTATGCCA
TTAGTGTTGACCCTGACTTCAAGAAATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAGGGAAG
GTGGGGAAGGAAGCGAATGGAGTCTTCCTTCTATATCTAGACTCAGTCATTTTCACAACGGAGTC
TGACTGAACCGCCGGGATTGATATGAGACTACGGTTCAAAGCTTC
Found at i:218923 original size:43 final size:42
Alignment explanation
Indices: 218731--218967 Score: 210
Period size: 43 Copynumber: 5.8 Consensus size: 42
218721 CCAAAAATGG
* *
218731 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* *
218772 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
218815 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * *
218850 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* ***
218891 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTGG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
218934 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA
218968 TTCTTCTTGA
Statistics
Matches: 158, Mismatches: 22, Indels: 30
0.75 0.10 0.14
Matches are distributed among these distances:
33 11 0.07
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 9 0.06
43 89 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 218231 -- 218730
TTAGTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACC
ATACAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 218968 -- 219467
TTCTTCTTGAAAGGTCAGGACTAATTATAATTATAGAAAGGTCAGGACTCATTGCAATTCAATGC
CATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTAC
TCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTAC
AAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTA
GTGCTCCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAAATGGCAATTGTATGCCAT
TAGTGTTGACCCTGACTTCAAGAAATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAGGGAAGG
TGGGGAAGGAAGCGAATGGAGTCTTCCTTCTATATCTAGACTCAGTCATTTTCACAACGGAGTCT
GACTGAACCGCCGGGATTGATATGAGACTACGGTTCAAAGCTTCC
Found at i:218936 original size:24 final size:23
Alignment explanation
Indices: 218908--218989 Score: 109
Period size: 24 Copynumber: 3.7 Consensus size: 23
218898 AAGACTGTCT
218908 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
*
218931 TGGAAAGGTCAAGACTG--TC-T-
1 T-GAAAGGTCAGGACTGATTCTTC
218951 TGAAAGGTCAGGACTGATTCTTC
1 TGAAAGGTCAGGACTGATTCTTC
218974 TTGAAAGGTCAGGACT
1 -TGAAAGGTCAGGACT
218990 AATTATAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
19 14 0.27
20 1 0.02
21 3 0.06
22 3 0.06
23 1 0.02
24 29 0.57
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (23 bp):
TGAAAGGTCAGGACTGATTCTTC
Left flanking sequence: Indices 218408 -- 218907
GTCAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATG
ACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
AAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAG
ACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCT
Right flanking sequence: Indices 218990 -- 219489
AATTATAATTATAGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGTACTCACTTGACAAAC
AAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCAT
TAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAATGCCATTAGTACTCA
CTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTAT
GCCATTAGTGCTGACCATACAAAAAATGGCAATTGTATGCCATTAGTGTTGACCCTGACTTCAAG
AAATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAGGGAAGGTGGGGAAGGAAGCGAATGGAGT
CTTCCTTCTATATCTAGACTCAGTCATTTTCACAACGGAGTCTGACTGAACCGCCGGGATTGATA
TGAGACTACGGTTCAAAGCTTCCGAACGAACTAGCTAGATCTGGA
Found at i:218943 original size:119 final size:120
Alignment explanation
Indices: 218734--218974 Score: 285
Period size: 119 Copynumber: 2.0 Consensus size: 120
218724 AAAATGGAAA
* * *
218734 GGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
1 GGTCAAGACTGTCTTCAAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
218799 GGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCAGGACTGATTCTTCT
66 GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCAGGACTGATTCTTCT
* *
218851 GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGG
1 GGTCAAGACTGTC-TTCAA-ATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAA-G
** *** * *
218915 TCAGGACTGATTCTT-CTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
63 TCAGGACT-AACCTTACCAAAAAGATCAAGACTATCTTG-AA-GTCAGGACTGATTCTTCT
218975 TGAAAGGTCA
Statistics
Matches: 103, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
117 13 0.13
118 9 0.09
119 57 0.55
120 6 0.06
122 1 0.01
124 17 0.17
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (120 bp):
GGTCAAGACTGTCTTCAAATCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCAGGACTGATTCTTCT
Left flanking sequence: Indices 218234 -- 218733
GTCTTTTTGAAAAGACAAAACAAAATAGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTGACCATA
CAAGACTCATTTGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGATTGAAAGGT
CAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTAT
GTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCA
AAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGAC
TGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCA
ATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAA
Right flanking sequence: Indices 218975 -- 219474
TGAAAGGTCAGGACTAATTATAATTATAGAAAGGTCAGGACTCATTGCAATTCAATGCCATTAGT
ACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGT
ACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTGTACAAACAAA
TGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCC
CAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAAATGGCAATTGTATGCCATTAGTGTT
GACCCTGACTTCAAGAAATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAGGGAAGGTGGGGAA
GGAAGCGAATGGAGTCTTCCTTCTATATCTAGACTCAGTCATTTTCACAACGGAGTCTGACTGAA
CCGCCGGGATTGATATGAGACTACGGTTCAAAGCTTCCGAACGAA
Found at i:219026 original size:27 final size:26
Alignment explanation
Indices: 218952--219026 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 26
218942 AGACTGTCTT
* * *
218952 GAAAGGTCAGGACTGATTC--TTCTT
1 GAAAGGTCAGGACTAATTCAATTATA
*
218976 GAAAGGTCAGGACTAATTATAATTATA
1 GAAAGGTCAGGACTAATT-CAATTATA
*
219003 GAAAGGTCAGGACTCATTGCAATT
1 GAAAGGTCAGGACTAATT-CAATT
219027 CAATGCCATT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 17 0.41
27 24 0.59
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (26 bp):
GAAAGGTCAGGACTAATTCAATTATA
Left flanking sequence: Indices 218452 -- 218951
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTGGAAAGGTCAAGACTGTCTT
Right flanking sequence: Indices 219027 -- 219526
CAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCAT
TAGTACTCACTGTACAAACAAATGCCATTAGTACTCACTTGACAAACAAATGCCATTAGTACTCA
CTGTACAAACAAATGCCATTAGTACTCACTATACCAACATGAGTACTCACCATACCAAAACAATG
CCATTAGTGCTCCCAATGGCAATTGTATGCCATTAGTGCTGACCATACAAAAAATGGCAATTGTA
TGCCATTAGTGTTGACCCTGACTTCAAGAAATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAG
GGAAGGTGGGGAAGGAAGCGAATGGAGTCTTCCTTCTATATCTAGACTCAGTCATTTTCACAACG
GAGTCTGACTGAACCGCCGGGATTGATATGAGACTACGGTTCAAAGCTTCCGAACGAACTAGCTA
GATCTGGATCTGCTGAACCTGGAGGCGCTTGCGGTACTATTGGCC
Found at i:219195 original size:28 final size:28
Alignment explanation
Indices: 219028--219186 Score: 286
Period size: 28 Copynumber: 5.7 Consensus size: 28
219018 ATTGCAATTC
219028 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
219056 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
219084 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
219112 AATGCCATTAGTACTCACTTGACAAACA
1 AATGCCATTAGTACTCACTTGACAAACA
219140 AATGCCATTAGTACTCAC-TGTACAAACA
1 AATGCCATTAGTACTCACTTG-ACAAACA
219168 AATGCCATTAGTACTCACT
1 AATGCCATTAGTACTCACT
219187 ATACCAACAT
Statistics
Matches: 127, Mismatches: 0, Indels: 7
0.95 0.00 0.05
Matches are distributed among these distances:
27 4 0.03
28 121 0.95
29 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (28 bp):
AATGCCATTAGTACTCACTTGACAAACA
Left flanking sequence: Indices 218528 -- 219027
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
TCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAA
GGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACC
AAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTGGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGT
CAGGACTAATTATAATTATAGAAAGGTCAGGACTCATTGCAATTC
Right flanking sequence: Indices 219187 -- 219686
ATACCAACATGAGTACTCACCATACCAAAACAATGCCATTAGTGCTCCCAATGGCAATTGTATGC
CATTAGTGCTGACCATACAAAAAATGGCAATTGTATGCCATTAGTGTTGACCCTGACTTCAAGAA
ATCGTCACAAATCTGGTTGGAGGTAATGAAGGAAGGGAAGGTGGGGAAGGAAGCGAATGGAGTCT
TCCTTCTATATCTAGACTCAGTCATTTTCACAACGGAGTCTGACTGAACCGCCGGGATTGATATG
AGACTACGGTTCAAAGCTTCCGAACGAACTAGCTAGATCTGGATCTGCTGAACCTGGAGGCGCTT
GCGGTACTATTGGCCAACTCTTTATAGGAGAGTTTGGACTGCGAGGGAGTCTGGTGGTATCGTAT
ATAAATAGGAGGCTGCTTTGACCTCAAAATGGAAGAAGACTACTCAAGATAGACAAAAGGAAAGG
TTGAGATTGAGAGTAGTACGTCTGCAGGGCCCAATCAAGGTCAAA
Found at i:226443 original size:21 final size:21
Alignment explanation
Indices: 226417--226458 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
226407 AGTGACGACT
226417 CTTCTCCACTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
**
226438 CTTCTCTTCTTCGGAGCGAGC
1 CTTCTCCACTTCGGAGCGAGC
226459 AAGTGCTACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (21 bp):
CTTCTCCACTTCGGAGCGAGC
Left flanking sequence: Indices 225917 -- 226416
ATTTACGGATCCATATGCTCCGATTGGAACTGGAAGTTCCGGAACAGGCGGCTGGTATACCACCA
TAATGAAACTGCCTTTTATTTTTTGCATTCGGATAGGATTTATGTTGGCTTCGTCGGGAGGCTCG
CGTAGTTTGTTACGTCAGCTCCAAAAGGAGAAGTTGCATTGGAATCGAGAAAGTTCCATTGAGTT
CATAATTGCATCAAAGGAGTCAAAGTAGTGGCTGCGGCGCGTCGAGGCACTTCTTCGACGGTCCC
CGTCCGCCCAAAAAAGGCGAGACAGAATGGGCGGGCACTACTAACCAAGCCAAGCCTAGTTCTCA
CCGATAGGCGCTGGTAGCTTGCTTCCATTTTTGCCTTTGTCCCGATCCTCCATCCCTCCCCATTT
TCGCTGTGTCGCGAAAGAGAGGGACCAAGCTGCGAGTGTTGCCTACGAGCGAAGTTGTAGGAGCG
AGCTGCGAAGCGAGACTCAAGGAAGGCGAGCTGCGAGTGACGACT
Right flanking sequence: Indices 226459 -- 226958
AAGTGCTACGCAAGCCTACATAGGCTTATGAAAAGGAGATCAAGACGCTCAACTTGCTCCTCCCG
AATGAGTGACGTTCTCTTTTTCCTCTCTACACTCCCCTTCAAGCAGCTAACGCGCACTCTTCCTC
TGGTGCAAACGGCCTGATGGCATATCCATTGCAGCAGCAAGGGCAGTTTCCTTTAGCTAGTGGAG
CCTTGAATGAGCTGTGGATAGCCGGGCATCTCAAAAGACAGACAGAAAGCGGATCAGCCGGGCAC
AACCTGTAGTCAAGCATAGTAGATGGAACTTGACGGCGCATCAAAGTCGAATCCGGTCTCGCCTT
CCTTGAGTTGACTCTGAAGCTTGCCCGTCATTTCTTTCTCACTCAGCAGGGGCGAGTAGCTTTGC
TTGCTAGCCTGAAGACTTGCTGCTTTAACTAGCCGCTTTCCTAGCCGCGGAGGTGAAAAGCTTTC
AGCGGAGAAGGCAGCGCCTATTCTCTCGATTAGTGGTCAGTTGTT
Found at i:228108 original size:55 final size:55
Alignment explanation
Indices: 228022--228144 Score: 187
Period size: 55 Copynumber: 2.2 Consensus size: 55
228012 ATGAGCTTTT
228022 TGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTG
1 TGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTG
* * *
228077 TTGTATGGTCAGCA-TGAATGGCAT-CTCATTGCAATTATGGTTGGTATACAATTTG
1 TGGTATGGTCAGCACT-AATGGCATAC-AATTGCAATTATGGTTGGCATACAATTTG
228132 TGGTATGGTCAGC
1 TGGTATGGTCAGC
228145 GGCATCTCAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
54 2 0.03
55 60 0.97
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (55 bp):
TGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTG
Left flanking sequence: Indices 227522 -- 228021
AAGTCAGAAAAGAAGAGATCAGAAGCGTTGAGAAAAAGACAGACTTGAAAGCTGACCAACAAAAG
GGACAAGACTGACTCACTGTTAGCTGGGAGGAAGATCAAATGCACTTTCAACTGCACCTTGATCC
TCGAAAAAAAGTAAACAAAAAAGCAAAGAAAAGCCCTGGAATATCGAAGCGAAATCGAACTCCAC
CGTCGGGACTGACTCGAATACACTGACGGCAGTTCGGAAGAACGGTATCGTCAAGACCTCTCGAG
AATAGACGAAGGGTCGGTCAAGTTTCCGGGGCTAGGCCCGGAAGGACTCTGACTAAAAGTCAGGC
AAGCCAAAAGAGCAATCATAGATTCCGCACGATAGGCCCGCCCATTCCCAGAATGAAAAGGTAGA
AGAAGAAAGATCAAAGCACTCGTGGGAAGAAGCCCTCGCAAAGCGAAGCAAAGCAAGTTCATGAG
CAAAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTT
Right flanking sequence: Indices 228145 -- 228644
GGCATCTCATTGCCATGAATCCTGACCTTTCCATAATTGCCTTTCCTTTCCATAACCTTTCCATG
AAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGA
CAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCA
CAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCAT
TTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACC
TTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGT
CAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
Found at i:228389 original size:43 final size:43
Alignment explanation
Indices: 228309--228433 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
228299 ATTAGTACTC
* * *
228309 ACCTTATCAAAAAGGTCAAGACTGTCTTTCACA-GTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTG
228352 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
1 ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
* ***
228395 ATTCTT-CTTGAAAGGTCAAGAC--TC-TGAAAGGTCAGGACT
1 A-CCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACT
228434 AATGAGAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
40 15 0.21
41 2 0.03
42 4 0.05
43 49 0.67
44 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
ACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTG
Left flanking sequence: Indices 227809 -- 228308
GGGGCTAGGCCCGGAAGGACTCTGACTAAAAGTCAGGCAAGCCAAAAGAGCAATCATAGATTCCG
CACGATAGGCCCGCCCATTCCCAGAATGAAAAGGTAGAAGAAGAAAGATCAAAGCACTCGTGGGA
AGAAGCCCTCGCAAAGCGAAGCAAAGCAAGTTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTC
TTCAAAGTATGAGCTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCAT
ACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCAATTATGGTTGGTATACAATTTGTG
GTATGGTCAGCGGCATCTCATTGCCATGAATCCTGACCTTTCCATAATTGCCTTTCCTTTCCATA
ACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTT
TGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTC
Right flanking sequence: Indices 228434 -- 228933
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTT
Found at i:228424 original size:16 final size:16
Alignment explanation
Indices: 228403--228433 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
228393 TGATTCTTCT
228403 TGAAAGGTCAAGACTC
1 TGAAAGGTCAAGACTC
*
228419 TGAAAGGTCAGGACT
1 TGAAAGGTCAAGACT
228434 AATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (16 bp):
TGAAAGGTCAAGACTC
Left flanking sequence: Indices 227903 -- 228402
AAAGGTAGAAGAAGAAAGATCAAAGCACTCGTGGGAAGAAGCCCTCGCAAAGCGAAGCAAAGCAA
GTTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTGGTATGGTCA
GCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTTGTATGGTCAGCATGAATGG
CATCTCATTGCAATTATGGTTGGTATACAATTTGTGGTATGGTCAGCGGCATCTCATTGCCATGA
ATCCTGACCTTTCCATAATTGCCTTTCCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTG
ACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTG
TATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTA
CCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
Right flanking sequence: Indices 228434 -- 228933
AATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAA
AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCA
GGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTA
CTCACCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTT
Found at i:228543 original size:43 final size:42
Alignment explanation
Indices: 228480--228649 Score: 117
Period size: 43 Copynumber: 4.2 Consensus size: 42
228470 TTGTATGTCA
* * *
228480 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * *
228523 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
** * * *
228561 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
* *
228599 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
228642 TCAGGACT
1 TCAGGACT
228650 TTTGATGGAA
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
33 10 0.11
35 1 0.01
37 5 0.05
38 16 0.17
39 6 0.06
41 1 0.01
42 4 0.04
43 51 0.54
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 227980 -- 228479
AGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAGCTTTTTGGTATGGTCAGCACTAATGGCA
TACAATTGCAATTATGGTTGGCATACAATTTGTTGTATGGTCAGCATGAATGGCATCTCATTGCA
ATTATGGTTGGTATACAATTTGTGGTATGGTCAGCGGCATCTCATTGCCATGAATCCTGACCTTT
CCATAATTGCCTTTCCTTTCCATAACCTTTCCATGAAGTTGGAAGCACTTTTGACGATTTCCTGA
ATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGT
ACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTA
ATGAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 228650 -- 229149
TTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGT
CTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTC
TTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCAT
TATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGT
CTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTG
GTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGT
Found at i:228805 original size:255 final size:263
Alignment explanation
Indices: 228322--229175 Score: 1033
Period size: 255 Copynumber: 3.3 Consensus size: 263
228312 TTATCAAAAA
*
228322 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* * * *
228387 CAGGACTGATTCTTCTTGAAAGGTCAAGACTC---TGAAAGGTCAGGACT-A----A--T-GAGA
66 CAGGAC---TTCTTCATGAAAGGACAAGACTCAATTGAAAGGTCAGGACTCATTCTACTTAAAGC
* * * * * *
228441 ATGATTGAGGAAT-GACCA--TCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
128 AGGACTCA-AAATGGA-AAGGTCAAGACTCATTTGTA--TAATCAGTACTCACCTTATCAAAAAG
228503 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
189 GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
228568 TGATTCTTCT
254 TGATTCTTCT
228578 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
* * * ** * * * *
228643 CAGGACTT-TTGATGGAAGGACAGGAC-CAATTGCAATTGT-ATG-C-CATTAGTAC-T-CA-CC
66 CAGGACTTCTTCATGAAAGGACAAGACTCAATTG-AAAGGTCAGGACTCATT-CTACTTAAAGCA
* * *
228700 TGAC-CAAAAATGGAAAGGTCAAGACT-GTCTTG-A-AATCAGTACTGACCTTATCAAAAAGGTC
129 GGACTC-AAAATGGAAAGGTCAAGACTCAT-TTGTATAATCAGTACTCACCTTATCAAAAAGGTC
228761 AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
192 AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
228826 TTCTTCT
257 TTCTTCT
*
228833 GGTCAAGACTGTCTTTCA-AGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 GGTCAAGACTGTATTTCACA-GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
* * *** * *
228897 TCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
65 TCAGGAC---TTCTTCATGAAAGGACAAGACTCAATTGAAAGGTCAGGACTCATTCTACTT-AAA
** *
228962 GGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
126 -G-CAGGACTCAAAATGGAAAGGTCAAGACTCATTTGTA--TAATCAGTACTCACCTTATCAAAA
229027 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
187 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGG
229092 ACTGATTCTTCT
252 ACTGATTCTTCT
229104 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
229169 CAGGACT
66 CAGGACT
229176 GATTCTTCTT
Statistics
Matches: 517, Mismatches: 43, Indels: 64
0.83 0.07 0.10
Matches are distributed among these distances:
251 1 0.00
252 13 0.03
253 4 0.01
254 5 0.01
255 170 0.33
256 70 0.14
257 4 0.01
258 11 0.02
259 30 0.06
260 5 0.01
261 3 0.01
262 4 0.01
264 1 0.00
267 25 0.05
268 4 0.01
271 166 0.32
272 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (263 bp):
GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTTCTTCATGAAAGGACAAGACTCAATTGAAAGGTCAGGACTCATTCTACTTAAAGCAGG
ACTCAAAATGGAAAGGTCAAGACTCATTTGTATAATCAGTACTCACCTTATCAAAAAGGTCAAGA
CTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCT
TCT
Left flanking sequence: Indices 227822 -- 228321
GAAGGACTCTGACTAAAAGTCAGGCAAGCCAAAAGAGCAATCATAGATTCCGCACGATAGGCCCG
CCCATTCCCAGAATGAAAAGGTAGAAGAAGAAAGATCAAAGCACTCGTGGGAAGAAGCCCTCGCA
AAGCGAAGCAAAGCAAGTTCATGAGCAAAGCCCTACGCTTTGCGAGTGCTTCTTCAAAGTATGAG
CTTTTTGGTATGGTCAGCACTAATGGCATACAATTGCAATTATGGTTGGCATACAATTTGTTGTA
TGGTCAGCATGAATGGCATCTCATTGCAATTATGGTTGGTATACAATTTGTGGTATGGTCAGCGG
CATCTCATTGCCATGAATCCTGACCTTTCCATAATTGCCTTTCCTTTCCATAACCTTTCCATGAA
GTTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACA
GGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 229176 -- 229675
GATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGG
TCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCAT
ACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGT
CAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTG
TCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
TTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT
CTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCT
Found at i:228867 original size:76 final size:81
Alignment explanation
Indices: 228756--228949 Score: 254
Period size: 76 Copynumber: 2.4 Consensus size: 81
228746 CTTATCAAAA
* *
228756 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTC
228818 AGGACTGATTCTTC-T
66 AGGACTGATTCTTCTT
* *
228833 -GGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTG-AA-G
228897 TCAGGACTGATTCTTCTT
64 TCAGGACTGATTCTTCTT
**
228915 GAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 ---AGGTCAAGACTGTCTTTCAAGGTCAGGACTGA
228950 TTCTTCTTGA
Statistics
Matches: 101, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
76 52 0.51
77 2 0.02
79 1 0.01
81 16 0.16
82 1 0.01
86 29 0.29
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (81 bp):
AGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGATCAAGACTATCTTGAAGTC
AGGACTGATTCTTCTT
Left flanking sequence: Indices 228256 -- 228755
AGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAA
AGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
TCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCT
TTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGT
CAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAG
GACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAAT
GGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAA
Right flanking sequence: Indices 228950 -- 229449
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
AAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
Found at i:228897 original size:19 final size:19
Alignment explanation
Indices: 228873--228948 Score: 89
Period size: 19 Copynumber: 3.7 Consensus size: 19
228863 ACCTTACCAA
228873 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
228892 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
228916 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
228935 AAAGGTCAGGACTG
1 AAAGGTCAAGACTG
228949 ATTCTTCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 31 0.63
24 18 0.37
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 228373 -- 228872
CTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATG
AGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAG
GTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGAC
TGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGT
CTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCA
CCTGACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 228949 -- 229448
ATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACT
CACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGA
CTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAA
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGA
AAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAAT
GATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACC
TTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTAT
CTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCA
Found at i:228905 original size:43 final size:42
Alignment explanation
Indices: 228713--228949 Score: 210
Period size: 43 Copynumber: 5.8 Consensus size: 42
228703 CCAAAAATGG
* *
228713 AAAGGTCAAGACTGTCTTGAAA-TCAGTACTGACCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
* *
228754 AAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* * *
228797 AAAGATCAAGACTATC-TG--A-TCAGGACTGATTCTT--C--
1 AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGA-CCTTACCAA
* * *
228832 --TGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGTCAGGACTGACCTTACCAA
* ***
228873 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTG
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA-CCTTACCAA
228916 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGA
1 AAAGGTCAAGACTGTCTTGAAA-GTCAGGACTGA
228950 TTCTTCTTGA
Statistics
Matches: 158, Mismatches: 22, Indels: 30
0.75 0.10 0.14
Matches are distributed among these distances:
33 11 0.07
35 1 0.01
37 4 0.03
38 19 0.12
39 5 0.03
41 17 0.11
42 9 0.06
43 89 0.56
44 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAGGTCAAGACTGTCTTGAAAGTCAGGACTGACCTTACCAA
Left flanking sequence: Indices 228213 -- 228712
TTGGAAGCACTTTTGACGATTTCCTGAATGTTATGGAAAGGTCAGGACTTTTGATGGAAGGACAG
GACCAATTGCAATTGTATGCCATTAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCACAG
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
GGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATTTG
TATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTA
CCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAG
GACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGGAAGGACAGGA
CCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGG
Right flanking sequence: Indices 228950 -- 229449
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTC
ACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGAC
TATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAA
AAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAA
AAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATG
ATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCT
TATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC
TGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAG
Found at i:228916 original size:24 final size:24
Alignment explanation
Indices: 228887--228971 Score: 126
Period size: 24 Copynumber: 3.8 Consensus size: 24
228877 GTCAAGACTG
228887 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
228911 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
228930 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
228954 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
228972 CATTATGGAA
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.33
24 36 0.67
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 228387 -- 228886
CAGGACTGATTCTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGA
ATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATG
GAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAA
GTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGAC
TGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 228972 -- 229471
CATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTC
Found at i:228950 original size:43 final size:43
Alignment explanation
Indices: 228833--228971 Score: 199
Period size: 43 Copynumber: 3.2 Consensus size: 43
228823 TGATTCTTCT
** * ***
228833 GGTCAAGACTGTCTTTCAAGGTCAGGACTGA-CCTTACCAAAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTT-CTTGAAA
228876 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
228919 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
1 GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
*
228962 GGTCAGGACT
1 GGTCAAGACT
228972 CATTATGGAA
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 85 0.97
44 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
GGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAA
Left flanking sequence: Indices 228333 -- 228832
TCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATT
CTTCTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAA
GACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 228972 -- 229471
CATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCT
TTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCA
CCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTC
TTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGG
TCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTC
Found at i:229154 original size:76 final size:79
Alignment explanation
Indices: 229028--229184 Score: 230
Period size: 76 Copynumber: 2.0 Consensus size: 79
229018 TTATCAAAAA
*
229028 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TCA
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
229090 GGACTGATTCTTCT
66 GGACTGATTCTTCT
* * * *
229104 GGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTG-AA-GT
229169 CAGGACTGATTCTTCT
64 CAGGACTGATTCTTCT
229185 TGAAAGGTCA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
76 51 0.72
77 2 0.03
79 1 0.01
81 17 0.24
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (79 bp):
GGTCAAGACTGTATTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTTGAAGTCA
GGACTGATTCTTCT
Left flanking sequence: Indices 228528 -- 229027
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATT
TCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTTTTGATGG
AAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCTGACCAAAAATGGAAAGGTCAAG
ACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCAAG
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAA
GGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAA
Right flanking sequence: Indices 229185 -- 229684
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACA
GTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAA
AGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTC
AGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGG
TCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTC
Found at i:229176 original size:43 final size:42
Alignment explanation
Indices: 229006--229177 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
228996 TTGTATGTCA
* * *
229006 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC-TTCAAAG
* * * *
229049 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-T--GA-
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
* * * *
229087 TCAGGACTGATTCTT--C----TGGTCAAGACTGTATTTCACAG
1 TCAGGACTGA-CCTTACCAAAAAGGTCAAGACTGT-CTTCAAAG
*
229125 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAA-G
229168 TCAGGACTGA
1 TCAGGACTGA
229178 TTCTTCTTGA
Statistics
Matches: 98, Mismatches: 18, Indels: 26
0.69 0.13 0.18
Matches are distributed among these distances:
33 10 0.10
35 1 0.01
37 5 0.05
38 19 0.19
39 5 0.05
41 1 0.01
42 4 0.04
43 53 0.54
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (42 bp):
TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTCAAAG
Left flanking sequence: Indices 228506 -- 229005
AAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGA
TTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTT
GAAAGGTCAGGACTTTTGATGGAAGGACAGGACCAATTGCAATTGTATGCCATTAGTACTCACCT
GACCAAAAATGGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTT
CTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
GTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAA
AGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 229178 -- 229677
TTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTC
AAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATAC
AAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCA
GGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTC
TTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTT
TCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTT
CAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
Found at i:229242 original size:19 final size:16
Alignment explanation
Indices: 229218--229264 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
229208 AAAAGTCAGG
229218 AAGGTCAGGACTCTTTTGA
1 AAGGTCAGGACTC---TGA
*
229237 AAGGTCAAGACTCTGA
1 AAGGTCAGGACTCTGA
229253 AAGGTCAGGACT
1 AAGGTCAGGACT
229265 AATGAGAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 14 0.54
19 12 0.46
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (16 bp):
AAGGTCAGGACTCTGA
Left flanking sequence: Indices 228718 -- 229217
TCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGG
ACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTT
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTAT
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGG
Right flanking sequence: Indices 229265 -- 229764
AATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCATCA
GTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGAT
CAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTT
ACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCT
TGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACC
AAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGA
AAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCAC
TTGACCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTA
Found at i:229390 original size:43 final size:42
Alignment explanation
Indices: 229327--229666 Score: 272
Period size: 43 Copynumber: 8.2 Consensus size: 42
229317 TTGTATGTCA
* * * *
229327 TCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
* *
229370 TCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG--A-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
** * * *
229408 TCAGGACTGATTCTT--C----TGGTCAAGACTGTCTTTCACAG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
*
229446 TCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
* ** * ***
229489 TCAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAA-
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
* * * *
229530 TCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTC-TTGAAAG
229573 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
** ***
229616 TCAGGACTGATTCTT-CTTGAAAGGTCAAGACTGTCTTGAAAGG
1 TCAGGACT-AACCTTACCAAAAAGGTCAAGACTGTCTTGAAA-G
229659 TCAGGACT
1 TCAGGACT
229667 CATTCTTCTT
Statistics
Matches: 238, Mismatches: 42, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
33 11 0.05
35 1 0.00
37 5 0.02
38 16 0.07
39 6 0.03
41 28 0.12
42 14 0.06
43 153 0.64
44 4 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (42 bp):
TCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAG
Left flanking sequence: Indices 228827 -- 229326
TCTTCTGGTCAAGACTGTCTTTCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTG
AAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTAT
CAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGA
TCAGGACTGATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCA
AGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAG
GAAGGTCAGGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGG
AAAAGTCAGAACTCACCTTACCATACAAGACTCATTTGTATGTCA
Right flanking sequence: Indices 229667 -- 230166
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGC
CATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTA
CAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTCTTGAAAGGT
CAGGACTTTCTTGAAAAGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAAA
TGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTACTTTTGAAGGTTGGCAATTCTT
TAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
Found at i:229475 original size:76 final size:80
Alignment explanation
Indices: 229348--229580 Score: 253
Period size: 76 Copynumber: 2.9 Consensus size: 80
229338 CTTATCAAAA
* *
229348 AGGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATC-TG-A-TC
1 AGGTCAAGACTGTCTTTC-AAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTC
229410 AGGACTGATTCTTC-T
65 AGGACTGATTCTTCTT
*
229425 -GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGG
1 AGGTCAAGACTGTCTTTCA-AGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTG-AA-G
*
229489 TCAGGACTGATTTTTCTT
63 TCAGGACTGATTCTTCTT
* * * * * *
229507 GAAAGGTCAAGACTGTC-TTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGACTGTCTTTCAA
1 ---AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATC-TT-GA
229571 AGTCAGGACT
61 AGTCAGGACT
229581 AACCTTACCA
Statistics
Matches: 134, Mismatches: 9, Indels: 19
0.83 0.06 0.12
Matches are distributed among these distances:
75 1 0.01
76 51 0.38
77 2 0.01
79 1 0.01
81 15 0.11
82 1 0.01
84 43 0.32
85 7 0.05
86 13 0.10
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (80 bp):
AGGTCAAGACTGTCTTTCAAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTATCTTGAAGTCA
GGACTGATTCTTCTT
Left flanking sequence: Indices 228848 -- 229347
TCAAGGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTC
TTGAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTAT
GGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTT
TCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTC
AAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGG
ACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAA
AGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTAC
CATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAA
Right flanking sequence: Indices 229581 -- 230080
AACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAAGA
CTGTCTTGAAAGGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATT
AGTACTCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCAT
ATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAG
GTCAGGACTCTCTTGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTCTTTTGAAAGGTCAAGAC
TTGATTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATT
AGTACTCACTGTGCAAACAAATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTAC
TTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGA
Found at i:229489 original size:19 final size:19
Alignment explanation
Indices: 229465--229666 Score: 88
Period size: 19 Copynumber: 9.7 Consensus size: 19
229455 ACCTTACCAA
229465 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
229484 AAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
229508 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
* *
229527 AAA--TC-AGTACTGACCTTATCAA
1 AAAGGTCAAG-ACTG-TC-T-T--G
*
229549 AAAGGTCAAGACTGTCTTTC
1 AAAGGTCAAGACTGTC-TTG
* ** *
229569 AAA-GTCAGGACTAACCTTACCAA
1 AAAGGTCAAGACT-GTCTT----G
229592 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
229611 AAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTG-----TCTTG
229635 AAAGGTCAAGACTGTCTTG
1 AAAGGTCAAGACTGTCTTG
*
229654 AAAGGTCAGGACT
1 AAAGGTCAAGACT
229667 CATTCTTCTT
Statistics
Matches: 141, Mismatches: 17, Indels: 50
0.68 0.08 0.24
Matches are distributed among these distances:
16 2 0.01
17 6 0.04
18 1 0.01
19 62 0.44
20 5 0.04
22 4 0.03
23 9 0.06
24 50 0.35
25 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (19 bp):
AAAGGTCAAGACTGTCTTG
Left flanking sequence: Indices 228965 -- 229464
CAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
GAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 229667 -- 230166
CATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGC
CATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTA
CAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCTCTTGAAAGGT
CAGGACTTTCTTGAAAAGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTC
ATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAAA
TGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTACTTTTGAAGGTTGGCAATTCTT
TAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATT
GAGGAATGACCATCAAGACTCATTTGTATGTCATCAGTACTCACC
Found at i:229591 original size:127 final size:127
Alignment explanation
Indices: 229425--229656 Score: 437
Period size: 127 Copynumber: 1.8 Consensus size: 127
229415 TGATTCTTCT
* *
229425 GGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
*
229490 CAGGACTGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
229552 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
1 GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
229617 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
66 CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAA
229657 GGTCAGGACT
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 102 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (127 bp):
GGTCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGT
CAGGACTGATTCTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAA
Left flanking sequence: Indices 228925 -- 229424
GACTGTCTTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAGGTCAAG
ACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGA
CTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAAGACTGTATTT
CACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT
TGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTGAAAGGTCAAGACTC
TGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTTACCATACAAGACTC
ATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTCAAAGTCAGGACTAA
CCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCT
Right flanking sequence: Indices 229657 -- 230156
GGTCAGGACTCATTCTTCTTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTT
GACCATATGCCATTAGTACTCACTGTGCAAACAAATGCCATTAGTACTTTCCATATGCCATTAGT
ACTCACTGTACAAACCAATGTCATTAGTACTCACCATACCAAAAAGATGGAAAGGTCAGGACTCT
CTTGAAAGGTCAGGACTTTCTTGAAAAGTCAGGACTCTTTTGAAAGGTCAAGACTTGATTGAAAG
GTCAGGACTCATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATTAGTACTCACTG
TGCAAACAAATGCTATTAGTACTCACTTGACCAAAAATTGTATGTCATTAGTACTTTTGAAGGTT
GGCAATTCTTTAGGAAAAGTTAGGACTTGATTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAAT
GAGAATGATTGAGGAATGACCATCAAGACTCATTTGTATGTCATC
Found at i:229635 original size:24 final size:24
Alignment explanation
Indices: 229606--229690 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
229596 GTCAAGACTG
229606 TCTTGAAAGGTCAGGACTGATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
*
229630 TCTTGAAAGGTCAAGACTG-----
1 TCTTGAAAGGTCAGGACTGATTCT
*
229649 TCTTGAAAGGTCAGGACTCATTCT
1 TCTTGAAAGGTCAGGACTGATTCT
229673 TCTTGAAAGGTCAGGACT
1 TCTTGAAAGGTCAGGACT
229691 CATTGCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
19 17 0.32
24 36 0.68
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTTGAAAGGTCAGGACTGATTCT
Left flanking sequence: Indices 229106 -- 229605
TCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCA
GGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCAGGACTCTTTTG
AAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCAGAACTCACCTT
ACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAAGACTGTCTTTC
AAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATTCTTCTGGTCAA
GACTGTCTTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTCTTGAAAGGTCAGGAC
TGATTTTTCTTGAAAGGTCAAGACTGTCTTGAAATCAGTACTGACCTTATCAAAAAGGTCAAGAC
TGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGGTCAAGACTG
Right flanking sequence: Indices 229691 -- 230190
CATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCAC
CATACCAAAAAGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGACTTTCTTGAAAAGTCAGGA
CTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTAC
TCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAAATGCTATTAGTACTCACTTGACCAA
AAATTGTATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGA
AAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATT
TGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGA
Found at i:229672 original size:43 final size:43
Alignment explanation
Indices: 229465--229690 Score: 264
Period size: 43 Copynumber: 5.3 Consensus size: 43
229455 ACCTTACCAA
*
229465 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTTTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
* * * **
229508 AAAGGTCAAGACTGTCTTGAAA--TCAGTACTGA-CCTTATCAA
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCT-TG
* ** ***
229549 AAAGGTCAAGACTGTCTTTCAAA-GTCAGGACT-AACCTTACCAA
1 AAAGGTCAAGACTGTC-TTGAAAGGTCAGGACTGATTCTT-CTTG
229592 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
229635 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTCATTCTTCTTG
1 AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
*
229678 AAAGGTCAGGACT
1 AAAGGTCAAGACT
229691 CATTGCAATT
Statistics
Matches: 158, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
40 3 0.02
41 25 0.16
42 11 0.07
43 115 0.73
44 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (43 bp):
AAAGGTCAAGACTGTCTTGAAAGGTCAGGACTGATTCTTCTTG
Left flanking sequence: Indices 228965 -- 229464
CAGGACTCATTATGGAAAGGTCAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGG
TCAAGACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACT
GATTCTTCTGGTCAAGACTGTATTTCACAGTCAGGACTGACCTTACCAAAAAGGTCAAGACTGTC
TTGAAAGGTCAGGACTGATTCTTCTTGAAAGGTCAGGACTCATTATGGAAAAGTCAGGAAGGTCA
GGACTCTTTTGAAAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAAAAGTCA
GAACTCACCTTACCATACAAGACTCATTTGTATGTCATCAGTACTCACCTTATCAAAAAGGTCAA
GACTGTCTTTCAAAGTCAGGACTAACCTTACCAAAAAGATCAAGACTATCTGATCAGGACTGATT
CTTCTGGTCAAGACTGTCTTTCACAGTCAGGACTGACCTTACCAA
Right flanking sequence: Indices 229691 -- 230190
CATTGCAATTGTATGCCATTAGTACTCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAA
ATGCCATTAGTACTTTCCATATGCCATTAGTACTCACTGTACAAACCAATGTCATTAGTACTCAC
CATACCAAAAAGATGGAAAGGTCAGGACTCTCTTGAAAGGTCAGGACTTTCTTGAAAAGTCAGGA
CTCTTTTGAAAGGTCAAGACTTGATTGAAAGGTCAGGACTCATTGCAATTGTATGCCATTAGTAC
TCACTTGACCATATGCCATTAGTACTCACTGTGCAAACAAATGCTATTAGTACTCACTTGACCAA
AAATTGTATGTCATTAGTACTTTTGAAGGTTGGCAATTCTTTAGGAAAAGTTAGGACTTGATTGA
AAGGTCAAGACTCTGAAAGGTCAGGACTAATGAGAATGATTGAGGAATGACCATCAAGACTCATT
TGTATGTCATCAGTACTCACCATACCAAAAAAAGTCAGGACTTGA
Done.