123.fas.2.7.7.80.10.50.500.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_037468
Parameters: 2 7 7 80 10 50 500
Length:  617195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  12  of  20  ( 2376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357950--357980	16	1.9	16	100	0	62	32	16	32	19	1.94
358001--358082	43	1.9	43	89	0	128	36	24	14	24	1.93
358152--358271	28	4.3	28	95	4	208	38	25	10	25	1.88
358293--358420	43	3.0	43	88	2	168	35	21	18	24	1.95
358326--358402	24	3.4	24	67	17	65	36	22	20	20	1.95
358389--358464	19	3.7	19	79	16	89	30	15	27	26	1.96
358542--358711	43	4.2	42	68	18	126	33	22	18	25	1.96
358699--358944	119	2.1	116	83	8	297	33	19	22	24	1.97
358878--359002	43	3.0	43	83	8	134	32	20	21	24	1.98
358972--359002	16	1.9	16	93	0	53	35	16	29	19	1.93
359045--359179	64	2.1	64	88	2	200	34	20	16	28	1.94
359129--359298	43	4.2	42	67	18	117	33	22	18	25	1.96
359312--359445	64	2.2	60	87	10	207	29	24	18	26	1.98
359327--359446	64	1.9	64	100	0	240	30	25	17	26	1.97
359457--359586	28	4.6	28	93	5	219	37	25	11	25	1.89
359457--359586	56	2.3	56	98	0	251	37	25	11	25	1.89
359764--359939	28	6.4	28	89	9	265	26	11	24	36	1.90
360114--360285	43	4.2	43	69	18	143	25	18	21	34	1.96
360107--360263	76	2.0	78	88	6	237	27	19	21	31	1.97
360342--360511	43	4.2	42	66	18	117	25	18	22	33	1.97
360092--360534	226	2.0	226	98	0	859	27	19	20	32	1.97
367579--367633	28	2.0	28	92	0	92	25	9	27	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367617--367796	95	1.9	98	84	6	251	27	22	17	32	1.96
367779--367977	43	4.9	43	73	14	195	26	17	23	33	1.96
367808--367878	19	3.5	19	68	17	52	26	19	22	30	1.98
367991--368140	24	7.2	19	67	25	81	28	23	18	30	1.98
367987--368149	43	3.8	43	81	6	197	27	22	18	31	1.97
367991--368268	84	3.4	85	82	10	335	26	20	20	32	1.97
367991--368149	19	7.7	19	68	26	83	27	22	18	32	1.97
368034--368287	43	6.2	42	71	14	199	25	19	21	33	1.97
368354--368473	28	4.3	29	94	5	212	25	10	25	38	1.88
368543--368624	43	1.9	43	87	0	119	23	15	24	36	1.94
368645--368675	16	1.9	16	100	0	62	19	32	16	32	1.94
368946--368999	19	2.8	19	97	0	99	27	16	33	22	1.95
369084--369240	76	2.0	79	88	6	239	30	22	19	27	1.98
369062--369233	43	4.2	43	70	18	143	33	22	18	25	1.97
369214--369332	24	4.9	24	72	17	102	28	15	26	29	1.96
369244--369302	28	2.0	28	83	6	73	33	11	32	22	1.90
369341--369467	56	2.3	56	86	10	174	36	23	11	29	1.89
369341--369467	28	4.6	28	83	12	156	36	23	11	29	1.89
369553--369583	16	1.9	16	100	0	62	32	16	32	19	1.94
369604--369685	43	1.9	43	87	0	119	36	24	15	23	1.94
369755--369874	28	4.3	28	95	4	208	38	25	10	25	1.88
369937--369967	16	1.9	16	100	0	62	32	16	32	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369986--370083	43	2.3	42	83	3	124	40	21	16	21	1.91
369552--370256	384	1.8	382	97	1	1340	36	21	17	25	1.95
370139--370336	28	7.4	28	75	15	161	35	24	11	28	1.90
370139--370336	54	3.7	56	72	22	192	35	24	11	28	1.90
370269--370336	29	2.4	28	95	2	118	36	23	11	27	1.90
372439--372621	28	6.5	28	96	3	334	25	11	24	38	1.89
372633--372717	24	3.8	24	80	15	117	30	24	17	27	1.97
372657--372731	19	3.7	19	78	16	87	26	26	16	30	1.96
372657--373006	86	4.1	85	83	3	368	27	18	19	34	1.95
372880--372944	19	3.2	19	74	19	67	30	23	13	32	1.93
372657--373006	43	8.2	43	77	5	327	27	18	19	34	1.95
373020--373137	19	5.7	19	74	18	83	27	25	16	29	1.97
373016--373120	24	4.8	23	77	18	100	29	24	17	28	1.97
373016--373345	43	7.8	43	75	9	234	28	20	18	33	1.96
373095--373258	81	2.0	81	95	0	292	27	19	19	33	1.96
373281--373345	19	3.2	19	76	19	76	29	24	13	32	1.94
372667--373484	213	4.0	203	71	20	745	28	18	19	33	1.96
373063--373483	43	10.2	42	71	12	293	27	19	19	33	1.96
373530--373560	16	1.9	16	93	0	53	19	29	16	35	1.93
374068--374138	19	3.7	19	73	14	74	26	28	16	28	1.97
374065--374195	38	3.3	38	78	14	147	29	23	19	27	1.98
374105--374298	43	4.8	42	70	15	149	25	19	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374067--374254	76	2.4	78	84	6	256	27	21	20	30	1.98
374379--374531	43	3.8	42	68	19	119	26	16	22	33	1.96
374577--374607	16	1.9	16	93	0	53	16	29	12	41	1.85
374594--374649	19	2.6	23	81	13	66	25	26	16	32	1.96
374432--374764	180	1.9	168	82	11	395	25	21	19	33	1.96
374675--374880	113	1.8	113	94	2	369	27	22	18	31	1.97
374880--375032	43	3.8	43	65	19	112	26	15	23	33	1.95
374807--375310	248	2.0	251	84	6	662	27	18	21	33	1.96
375110--375185	19	3.7	19	79	16	89	26	27	15	30	1.96
375107--375171	24	2.9	24	80	15	86	30	26	15	27	1.96
375109--375290	43	4.2	43	87	2	190	26	19	19	34	1.95
375172--375248	24	3.4	24	63	23	58	23	18	20	37	1.94
375202--375267	19	3.2	19	66	25	53	30	15	18	36	1.91
375422--375452	16	1.9	16	93	0	53	19	29	16	35	1.93
375460--375589	43	3.0	42	89	4	197	23	19	21	35	1.96
375505--375575	19	3.5	19	71	17	61	26	19	22	30	1.98
375773--375925	43	3.8	42	66	19	110	26	16	22	33	1.95
376003--376073	19	3.7	19	73	14	74	26	28	16	28	1.97
376056--376254	43	4.9	43	72	14	177	26	16	23	33	1.96
376021--376254	119	1.9	121	89	4	364	26	18	22	32	1.97
376530--376560	16	1.9	16	100	0	62	32	16	32	19	1.94
376689--376808	28	4.3	28	95	4	208	38	25	10	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376886--377098	43	5.2	43	72	14	180	33	22	17	26	1.96
377004--377080	24	3.4	24	65	17	65	35	23	19	22	1.96
377067--377340	19	13.7	19	66	20	105	29	17	23	29	1.97
377070--377343	38	6.9	38	76	16	277	28	17	23	30	1.97
376901--377301	122	3.3	121	82	6	447	31	19	20	28	1.97
376908--377341	81	5.4	81	73	13	342	30	19	21	28	1.97
377418--377587	43	4.2	42	67	18	117	33	22	17	26	1.96
377768--377838	19	3.5	19	70	17	61	29	23	19	26	1.98
377754--377867	43	2.7	43	97	0	210	34	23	16	25	1.95
377575--377820	119	2.1	116	83	8	297	33	19	22	25	1.97
377850--377959	19	5.7	19	69	21	77	29	17	26	27	1.97
377754--378218	43	11.0	42	70	18	184	33	20	20	26	1.97
377853--377928	38	2.0	38	100	0	152	23	18	26	31	1.97
377929--377959	16	1.9	16	93	0	53	35	16	29	19	1.93
378105--378175	19	3.5	19	71	17	61	32	21	18	28	1.96
378124--378200	24	3.4	24	67	17	65	36	22	20	20	1.95
378350--378404	28	2.0	28	92	0	92	38	27	9	25	1.86
383206--383260	26	2.2	24	84	12	76	25	7	27	40	1.82
383350--383434	24	3.8	24	80	15	117	30	24	17	27	1.97
383374--383448	19	3.7	19	78	16	87	26	26	16	30	1.96
383350--383488	43	3.2	43	88	2	181	27	24	18	29	1.98
383374--383564	76	2.4	78	84	8	233	26	21	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383512--383608	43	2.3	41	87	3	131	23	16	20	39	1.92
383689--383841	43	3.8	42	68	19	119	26	16	22	33	1.96
383888--383918	16	1.9	16	93	0	53	19	29	16	35	1.93
384130--384236	28	3.8	28	95	4	198	26	11	25	37	1.89
384244--384289	24	1.9	24	100	0	92	32	21	19	26	1.97
384205--384398	99	2.0	99	85	7	263	25	21	19	33	1.97
384384--384536	43	3.8	42	68	19	119	26	16	22	33	1.96
384614--384689	19	3.7	19	79	16	89	25	28	15	30	1.96
384611--384852	43	5.9	44	73	14	171	26	21	19	32	1.97
384614--384729	19	5.6	19	67	18	52	25	26	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20