Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_063925
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 148199
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Found at i:15565 original size:2 final size:2
Alignment explanation
Indices: 15553--15600 Score: 51
Period size: 2 Copynumber: 24.0 Consensus size: 2
15543 TGGGGCATAA
* * * *
15553 AT AT CT AT AT AT AT AT AC CT AT AT AT AT AT AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
15595 TT AT AT
1 AT AT AT
15601 CTTTCTCATA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 15053 -- 15552
TCGATAAGACATCTTAAAATCTGTTCGTAAGGGATGGGCCGATTTTCTCTCCGGATTGCTGCCAA
ATTCTGTTCAGATCTGCTTGCGTCGAAAGGATAAAAATTTTTTTCATTTCGTTTTCCATCCCCTC
TCAACGAAAATAGCAATAAAATTTCACCGAGAGCCTAGTCTTTGATTGATTGCTAATTGAAAATC
GCTTGATGGTTGATTACTAGCGTGTTATACTGACTGTGCGAGGCCGGACTGCGGGACTGCGATCG
AGATGTTGACTGACACAGTACTTGGCGAGAAACTGTAATGCAAAAAAAATATATAGATTTCTCTG
CCCGTAGGGCCACTCCGGGGTAGGTTTTATTTGGGTCGGTTCTAGGGACGTTGGGGAGGAGGTCT
GAAAAGGGCAGGCAGCTTTCTGGCACGAACGCCTAATAACGCAATACGCTAGTCATGCGCCTATT
TACCATGCTCTATACCGCAGCTTAAGCTAATAGGATGGGGCATAA
Right flanking sequence: Indices 15601 -- 16100
CTTTCTCATATTTCTCTTGCAGCAATCAAGCGTATACGACACGTAGTGCTTAAGAATAGCAAACT
AGTGCTTGTAGCTCAATTGGATAGAGCACCAAACTACGGATTTGGGGGTTGAGAGTTCGAATCTT
TCCAAGCATGGGCCTATCCATCGGATTGGACTAAGGGAATACGTCATATAAGTAGGGAATATGTC
AGATAAGTAGAGAATAACTAGTTCCAAGCAGACGTTCTCCAGCTCCGCCCCTGCGGAAGAGGCTA
CAAGGAAAAAAAAAATATATATATACCTACGTCCCCCGACTAATGGCTTAAGCACACTGTGCTCT
TGTATTGTCCGACTATTATGGACCCGTGGCGTCGGGAGAAAGATGGGGTTCCAAATCGTAAATGG
TCCCTGGGAGTGGTGCGAACTATCGCCAGTTTGGTAATTTTCCCACACATGTGGTGGACTGCTCG
CCGCAGGTACCACCAGAGCCTGGTGGCTTTACCCTGAAATTCGGT
Found at i:15789 original size:20 final size:20
Alignment explanation
Indices: 15764--15811 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
15754 GATTGGACTA
*
15764 AGGGAATACGTCATATAAGT
1 AGGGAATACGTCAGATAAGT
*
15784 AGGGAATATGTCAGATAAGT
1 AGGGAATACGTCAGATAAGT
*
15804 AGAGAATA
1 AGGGAATA
15812 ACTAGTTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.27, T:0.23
Consensus pattern (20 bp):
AGGGAATACGTCAGATAAGT
Left flanking sequence: Indices 15264 -- 15763
CTAGCGTGTTATACTGACTGTGCGAGGCCGGACTGCGGGACTGCGATCGAGATGTTGACTGACAC
AGTACTTGGCGAGAAACTGTAATGCAAAAAAAATATATAGATTTCTCTGCCCGTAGGGCCACTCC
GGGGTAGGTTTTATTTGGGTCGGTTCTAGGGACGTTGGGGAGGAGGTCTGAAAAGGGCAGGCAGC
TTTCTGGCACGAACGCCTAATAACGCAATACGCTAGTCATGCGCCTATTTACCATGCTCTATACC
GCAGCTTAAGCTAATAGGATGGGGCATAAATATCTATATATATATACCTATATATATATATATAT
AGATATTTATATCTTTCTCATATTTCTCTTGCAGCAATCAAGCGTATACGACACGTAGTGCTTAA
GAATAGCAAACTAGTGCTTGTAGCTCAATTGGATAGAGCACCAAACTACGGATTTGGGGGTTGAG
AGTTCGAATCTTTCCAAGCATGGGCCTATCCATCGGATTGGACTA
Right flanking sequence: Indices 15812 -- 16311
ACTAGTTCCAAGCAGACGTTCTCCAGCTCCGCCCCTGCGGAAGAGGCTACAAGGAAAAAAAAAAT
ATATATATACCTACGTCCCCCGACTAATGGCTTAAGCACACTGTGCTCTTGTATTGTCCGACTAT
TATGGACCCGTGGCGTCGGGAGAAAGATGGGGTTCCAAATCGTAAATGGTCCCTGGGAGTGGTGC
GAACTATCGCCAGTTTGGTAATTTTCCCACACATGTGGTGGACTGCTCGCCGCAGGTACCACCAG
AGCCTGGTGGCTTTACCCTGAAATTCGGTATGGGACTAGATATGAGTATTAAATTACTCGGCCTC
CCCCAGTATCTGGCTCTAGGAGAGGGGGGGACAAAGATCCAAGGCCTGACTGGTCCGCCGTGAGG
CGGACGGAGGAGCCATCGGACCCTGTGCCAAGTCATGTATATATATCTTAATTTATGGCGGAAAT
AGCTTAATGGTAGAGTATAGCCTTGCCAAGGCTAAGGTTGAGGGT
Found at i:24341 original size:13 final size:13
Alignment explanation
Indices: 24323--24348 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24313 CTAACACTTC
24323 ATATGTACGTAGT
1 ATATGTACGTAGT
24336 ATATGTACGTAGT
1 ATATGTACGTAGT
24349 TCGATCTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
ATATGTACGTAGT
Left flanking sequence: Indices 23823 -- 24322
GTTGCTTTTATCCCTAGGAAGAGGGGGCCTGCCCCCTTAAGCGAAAAGGTACCTAGTAATAAAAA
ATCGCTTGATAACAAAGAGTAGGGAAGGAGCCTATGTACTTACTAACTAAATGCCGTTTGTCAAG
TTTTCGACTTCGACGAGTTTCTCAGGCGATCTTCGAAGGACCGTGCGTGGGGTGTGCCGTCCCGG
ATTTTAACAAGCTCCGAGGGAGGGATAAAGTAATGTTAGAGAGCCGTGCGATAGGCGACCATCTT
GTACGGTTCGGAGAGCACTGAGGTAGCCCGGATCGGTAAACAGGGTAAACTTGGGGCCGTATAGG
GTGGACCTCTCGACTCTATCCCGCAAATCCGATGTCAACCCCGGTTCATATAGTGCTGGAACGGT
ATTTCTTACTACCAGTCTATGCTATTTTTCGAAGTATACTTAACGAATTAGGGAGTGTAGCCGCC
ATAGGACTAGTTTTTGTGTCAGGCTCTATCTTTCACTAACACTTC
Right flanking sequence: Indices 24349 -- 24848
TCGATCTTTTCGACCAATTCACCAAAAATTGTTTCGGTTGCCTGTAGCAGATCGCTCGCCTTTAG
GTTGGATTGGATGTCAACCCGTGCAAGCACCATATGTTACTTACTATTGCACAAATTGCTCCAGT
TTTCTACTACTTCGCTGTAACGATCACTCTTTGCGAATGTAAAGCCGAATTATTTGTAGAAAGGT
ATAATGCTTGGAAGGGCGCAGATTACGACTTTTTCCAATACATCGGCCTTCCTCTTTTGGTCCCA
CCCACGATCGCCTCAGCTTTGGAGTTACCGGCCTCCGCAACACCACTCTCCGTTGAATCCGTACC
TAGCTCGCTGTGGCGAGCTAGGTACGGAGTCTGTTTTTGATTTTCGCGGTTTAATCGGATCTTCG
GGCTTCCGACCGCGATTCTTTTGCTGGCCGATTGAGGCGCTCGTATCAAGGCTCTACTTCCTCCC
CGACGGTAGAGGACTTGGAAAGGGGGCTATATCAGAATTACCGAA
Found at i:31979 original size:24 final size:25
Alignment explanation
Indices: 31935--31981 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
31925 TCCGATGAAT
* *
31935 GATACTCTAATAATGCGATTACAAC
1 GATACTCGAATAATGCAATTACAAC
31960 GATACTCGAA-AATGCAATTACA
1 GATACTCGAATAATGCAATTACA
31982 TAATAAATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.26
Consensus pattern (25 bp):
GATACTCGAATAATGCAATTACAAC
Left flanking sequence: Indices 31435 -- 31934
CCAAAGCCGACGGGGGACCGTCAGTCAGACGTAAGAGGGGGGGGGGGGACGAGAAAAGAACGCGG
GCTGAAATGGCTGAGAAAGAGGGCACATAGTACGTCAATCTGCAAGCCCGAACACGCTCCCCGCG
CAACTCCGCGCCTATGGGCCTCCGCCGGCCGGAGAAGGTGCGTAAGTACTTTCAGACAGGATACT
TCTTTACGGGAGAAAGGCCTGATGAAGGGCACGAGACGACTATAAGGGGAGGTGCTAGGCACGGC
CCGAAGGGTGGAAGGTTTCGGATTTGACTTCTTCATCGAAGGGTCCCTCACCGCCTCTTATTACC
ATATTTCTCTGTGAGGATTCATCGGATTCAGCCTTTATCCATGAGGGTTCCTCTCTATTCACCTA
TAATGATTCCTCATTCCCCAATGCTTATTCGAGGCTGGGAACGTAAACGAGCTATTGGAATTACA
TAGTTAATAGCATAACTGGAAAATTCATCGTATATTCCGATGAAT
Right flanking sequence: Indices 31982 -- 32481
TAATAAATCGCATTTTTAAGCAAATCGGTAAGGCGGCGGACAATGATCGATTCGGACTCTTACGG
ACTTGAGCGAACGTATAACGTATAAAGGCTGAAGAACTAATACACGTCCGTGAGGCTAAAAATCT
CTTTATTTTTTCTTAGCCTTTCCCACTACTAATGCTGATCAATCAAATTCTAAGCATTAATATAA
TATTCTTTGCGGGAGCCGAGCAAGGTGTAGCGCAATCTGGTAGCGCGTCTGCCTTGGGCGCAGAA
AGTTACAGGTTCAAATCCTGTCACCTTGAATCAAAATCGGAGTCAACTAAGAAGATGAAAATAAA
TCGACCGTTATCACCTCACCTTACCATCTATAAGCCACAGCTTACTTCGACGTTTTCTATTTTCC
ATAGAATATCCGGGGCGTTCTTGGCCACTATGGTTTTGTTCAGTATTTTTTCTTTCAAAATAGGT
GATCTCAGCCTCACGTTTTATCATTTTTATCAGTATTTCTTCCTT
Found at i:41968 original size:38 final size:38
Alignment explanation
Indices: 41917--41991 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
41907 GTGGCATCCA
*
41917 AGGGTGCGAGGGGTGGCTATGAGAGGGAGGAAGACCCG
1 AGGGTGCGAGGGGTGGCTATGAAAGGGAGGAAGACCCG
*
41955 AGGGTGCGAGGGGTGGCTGTGAAAGGGAGGAAGACCC
1 AGGGTGCGAGGGGTGGCTATGAAAGGGAGGAAGACCC
41992 AAGGAATTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.24, C:0.13, G:0.52, T:0.11
Consensus pattern (38 bp):
AGGGTGCGAGGGGTGGCTATGAAAGGGAGGAAGACCCG
Left flanking sequence: Indices 41417 -- 41916
TAAAGTTGCACGTTGCCCTTGGGTTTAAGTGAAGAGCTTTCCCTATTTATGCAACAATTCGCTTA
TCGTATTGACGAATTAGAAGACGTGTTAACCAACAACCGTGTCTGGAAACAACGATTAGTGGATA
TTAGTATTGTCACTGCACAGCGAGCTGCGGCGGATTGGGGATTCAGCGGTGTAATGTTAAGAGGC
TCCGGAGTAGAAGAGCCTAAAGGAGATTATTCTGGTGTGTAGCTAGTCGATGAGATGGAAGAACC
AATCGTCCTTATCGCTGTAAAATAAGAGCACCCGGTTTTGTTCATTTACAAGAACTTGATTTTAT
GTTCAAACATGACACGCAACCTGTTCACGGGATAAGACGATGAGTTGTACTTGTGCGCTCTACTC
GGCGTACATCCACACCAGGATGACAGAGTGATCGAACTGAGTTTTTTATGGAGGTAAAAGTCCGG
AGAACGGGGTAACAGCGTACCCCCACGCGTCTGGAGTGGCATCCA
Right flanking sequence: Indices 41992 -- 42491
AAGGAATTGAGCAACGGCGTGACCATAACAACCTCCTTGGTTATCCTCCACCCGTGCGGGTATTT
AACCCCCTTCGAAGGCTAATTAATGAACCGCAGCATCTGAAGCGTCGTCATAGACAAGCGGGGCG
GCGGCGGTATTGCTTCTGACCCCATCGAATATAGGCCTGAGGTAAAGTAATAATGTGGTGTCCTT
TCTCATTCCTTCAACGCGCCTCCGACGTCTAGCAGGAGCTTTACGACCCAATCCGGAGGGATAAA
TGGAAAATCGGAACTGGGTAACCCACCCCGGACACCTCTGAGGTTAGAGAGGGCTATCGATGTCA
TCATTATATATATATAAAGCCTAAGTGATGACAGTATGATTTATTGCTTTATCCGTTTATTTCTC
TACCATCACCCCCTATATATATAGCCTAAGTGATGACAAACAAGGTTTGTCATCACTCCTTAATA
TATAACACATAAGTGATGACGAACGGCAACCCCACCCTGCTATAT
Found at i:43083 original size:31 final size:31
Alignment explanation
Indices: 43036--43101 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
43026 TCCGTCGTCT
43036 GATTCGCCTTTCCCTTTGTCAGAGAGAGTCA
1 GATTCGCCTTTCCCTTTGTCAGAGAGAGTCA
* *
43067 GATTTGCCTTTTCCTTTGTCAGAGAGAGTCA
1 GATTCGCCTTTCCCTTTGTCAGAGAGAGTCA
43098 GATT
1 GATT
43102 GAGGTTTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (31 bp):
GATTCGCCTTTCCCTTTGTCAGAGAGAGTCA
Left flanking sequence: Indices 42536 -- 43035
TGATTACGCATCTCACTCCTATTTACCTCTTTCAATAAGAGGGTCGAAAATTTCGGTTACGATAT
AGTTTGCTACATCCACAAACTTCAATACCGCCTGATCGAAACATATACCTGAAACATCGAGAACT
TGTTACCCGGGCATTGTTCGTAGACTTTACAAAACACGCTGTAATCCGATTCGTGTTAGATTTTC
CCGTCTTCGTACAGTCTATGAACTATTGTTGTTATATCTGCCACAAAATTGAGAAACGATGCGGC
TAGTATGATTATAACGCTCCAATGTATGGGCCGAACCAGCCATGGGAATATAGTGTGAAAAAATA
TTATAGCAAAACTCCCAAATATGCAGAAGATTCAATATACATAGATACGAATTCGTTTATAGATT
TTGTTACTGAACAAAGAATTTATAGTTGAGAGACTAGACAACATATGAATTTAGCTCCTATTTCT
TACTCCTTTTCATCCCTCCCGTGGGAGGTGCTCGCTCCGTCGTCT
Right flanking sequence: Indices 43102 -- 43601
GAGGTTTATTCCTCATCAGTAGCTCATATCTAGTAAATATTCGCTGATATCGCGACTGGTTATGA
TCGGACAATGAATGGGTCCCCATAGATTAGGGACTTAACCCCAATTTGATTTCTCACATCGCTCA
GTTTTTCAATATTTTGATCAAAAGGAGGGCTTTGTTCAATATTCCACCGTTCCTCTGCCTCTCCC
GATATCTTTCGCAAATAGTAATAAATATCGCTCTTCATTGTAGCAGAGTTTTCAACTATTAAATC
TAGGTTTCTTCCGAATCTCCTTGTAGAAAATGTCATTTCGGGAAATCCCTCCTTTATATTCTCCA
GACCACTTGTAACTTCAGATAAGAAAACTATAGTTTCCTCTGATGATTCATCATTTCGTTTAATG
ACCTGGAGGCTGTTTTCCACAGCTTGGACCATATCTGTCAAACCTTTCACCTTCTCGTGCAGTGC
ATCTCCGCGTTTTGTCCATTCTTCCTTAATCCCGTTCAAGTCTCT
Found at i:51851 original size:18 final size:18
Alignment explanation
Indices: 51774--51851 Score: 129
Period size: 18 Copynumber: 4.3 Consensus size: 18
51764 GTATAATTTA
51774 TGTGATTAATATCAAAAC
1 TGTGATTAATATCAAAAC
*
51792 TGTGAGTAATATCAAAAC
1 TGTGATTAATATCAAAAC
*
51810 TGTGAGTAATATCAAAAC
1 TGTGATTAATATCAAAAC
*
51828 TGTGATTAATATCAAAAA
1 TGTGATTAATATCAAAAC
51846 TGTGAT
1 TGTGAT
51852 CAATTTGCAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (18 bp):
TGTGATTAATATCAAAAC
Left flanking sequence: Indices 51274 -- 51773
TTTTCTAGCTCCTTCCCGCTCCATGTGTTAATATGTATATATCAAATATGGATTCGGGCTAGGCT
GACAAACACTATACGGTGGAATAAACTGACGACCTATATTTATAAAGGGGGGGCATCATTCCATA
TATGTCATCACAGGCTCTATATATATATGGAGTGATGACATTTTTTTATGTGTGCCTTTGATCGG
CGCACAATCAGGCATTATAGATGCGGGAGGCCCAGGGGACCCCTCCATTGATTTATGTCATCACT
AGGTATAGATATGGAGTGTGTGATGACACAATAATAGAACCTCCCCCGGAGGGAGGGGGGGGGGG
AGGGGTACATATCGGTAGGCTTCTATTTATGCTGTCATCACTCCATATATATATATAGCCCCAGT
GATGACAGGATTCTATATATCCCCCCAGTAGGGATGTAAGCACAGGGTGTGATAGCTCAGTGGTG
GGGAGGGGCCGTCCCCTTGAGAGGTGGACGGCCCCGTATAATTTA
Right flanking sequence: Indices 51852 -- 52351
CAATTTGCATTTTTGATATTACCTATCCCGAAGTTAAAGTAGGTCGTTCTTATGGTTCCATCAGA
CTCGTTGCTGAAAGTTTAACTAGGAAGTGTTATATGGTACCAGGAGCAAGAGGATAGCGATGCGC
AGCCGATGCAAAGAACGTACCGATCGGTTTTCCTGCCATCATTGGCTATCGAGAATCCATCTTTA
CTGCTTTTTGACGAAAGCCCCCCGGGCTTCCAGTAGCTCGAATACTGTTTTAATACGCTTTATAG
CCCTATCAACTTCGTGTTCCCCAACTTCTCTTCTACGACACCGTTCCAGAGAAAGTCTTTGAATT
GGAATCGGAAACAAATATATTTAGGGGTAGTAAGAACTAACCACGTGACATAATTTTCGCCATTT
TCGGATAAGTTTGATCTCAACTTCTGCAAAAAGGTATCGGAGTTAACATAATATTGATTTGTTTT
CATAATACTTTTTTCACTTTCCGAGAGGTCACTCCGTAAATGGAG
Found at i:63119 original size:42 final size:42
Alignment explanation
Indices: 63060--63156 Score: 185
Period size: 42 Copynumber: 2.3 Consensus size: 42
63050 ATAGGTGGGA
63060 AGAGTGTCCGAAGTCTTCTAAAAATGGCTTGGAAAGAAGGCG
1 AGAGTGTCCGAAGTCTTCTAAAAATGGCTTGGAAAGAAGGCG
63102 AGAGTGTCCGAAGTCTTCTAAAAATGGCTTGGAAAGAAGGCG
1 AGAGTGTCCGAAGTCTTCTAAAAATGGCTTGGAAAGAAGGCG
*
63144 AGAGTGCCCGAAG
1 AGAGTGTCCGAAG
63157 GGCCTGCGAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (42 bp):
AGAGTGTCCGAAGTCTTCTAAAAATGGCTTGGAAAGAAGGCG
Left flanking sequence: Indices 62560 -- 63059
GTCGGAGGAAATTCCACGTCTACTGTAACCGTTATGAACATTTTCTTAAGTTGTCTAAGTTGCCA
AGAAATAGTTCCAAAACACGAGTAAGAAACCGGTGTATTTTCACGGGGCGCCCTCGTTCCGTATA
TAAGTTATTCCGCATTTCTCGTATAGTTTTTCGCGAATTAGCTTCTAAAGGTTCTTTAATAGGCA
TAAACAAATCGTGTTGGTAGCCAATAAAAGGTTAGCTCTTCGAGTATCTATAGGTCTTCTTTCAC
TGCCTCCCAACCAAGTATACGAGGTGCTCGGAGGATGAAATATGTTTTTTCCCTCGGTTATGATT
CGAACATTTACTACACGCTAAACGTTCTCCACGGAGAATCTAATAGCTGAATCAGGAATAGAACG
AAAAACAACAAATATTTTTCCGAACCCTGCGGCCGCCAGAGGCACGAGACTAGAAAAGGAGGTGC
TACGCACGGCCCAGTGGCGGCGGGGACAAGACCTAATAGGTGGGA
Right flanking sequence: Indices 63157 -- 63656
GGCCTGCGACTGTCCGACGAAAAAATCTTTTTTGGGCACGAGACTATAGGGAGGGGTGAAACCAC
CAATTTAGAAATATCTCCCTTAATAAAGAATAAATCAAACGCCCCGGCCGGAAGTGCTGTCCGAA
AAAATCGAGAAAAAAATCTTTTTTTTATGCATACATTAAGTAATCTTTTGTCCAGTATAAAAAAT
GCGCAAAAAGCTCAAAAGCGTGTTCTTTATTTTTCCTCCTTCAAAAAAATAAGCGAGAGAAAAAA
ACGCTTTGTCTGCTCTGCTTGTAAAATCACGCCTCGTGTTTTCGTTTCGCGTCTCTGTTGGGATT
TCTGCAGAATTCTGTGCGATGAGGGTTATATCCACGGATTCTCTCGGGAAGCAGACGGAAGCTTG
AGAATAGTGTTGAAGTATCATTTTTCTGGAATGGGTGTAATGAGAAAGATGGAAACGATATCTAA
ACCAGGTTTTCGGATTTATTCATCAAAAAATCGTTTATCAAAAAA
Found at i:64577 original size:27 final size:27
Alignment explanation
Indices: 64547--64602 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
64537 ATAAACACTC
* *
64547 ATGCAAGAAAAGCACGGTATTACTAAT
1 ATGCAAAAAAAACACGGTATTACTAAT
* *
64574 ATGCAAAAAAAACACTGTATTACTTAT
1 ATGCAAAAAAAACACGGTATTACTAAT
64601 AT
1 AT
64603 TCAATCAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.27
Consensus pattern (27 bp):
ATGCAAAAAAAACACGGTATTACTAAT
Left flanking sequence: Indices 64047 -- 64546
ACAATATCGGAACGAAATTATACATAGGAAACAAGGGAAAAAAAAATAAATCATGTCATATATTT
TAGGAACCAATCTAAATTCCAATAAACAGGTGAAAATTGCCTTAACTCGAATCGTCGGAATTGGG
CCTAAAAAGGCAATTCAAGTTTGTGATCGATTAGGCCTCAGCGATAACATTAAGGTTAATAAGTT
AACTAAGTATCAATTTGACCAAATTCTAGAAATAATAAGTCAAAATTATTTAGTCGATTCGGAAT
TGGAGAGAGTCATTCAGAGGGACATCAAACGATTAATTAGTATTGGTTGTTACCGCGGGTTTCGC
CATAATGCAGGATTGCCCTTACGCGGCCAACGGACTCATACTAATGCTAAGACTTCTCGCAAATT
TAGAGACATTTCGATCAGAAGTTGAGAAAAGTTTTTTTCCTTCTTTTATGGATGGGAAAAAAACG
GAATCGATGATATCGAGCAACACCAAAAAGATTCAATAAACACTC
Right flanking sequence: Indices 64603 -- 65102
TCAATCAACTTTCGGTAATACAATTATTACTTTAACGGATTATGACGGAAATACGAAAACCTGGG
CCTCCTCGGGTTCAGTGGGGTTTAAGGGATCTCGTCGCTCAACCAATTATGCTGCTCAAGCAACT
GCAGAAAATGCCGCGCGAGCTGCCATTCAACTTGGATTTAAGTTTGTTGAAGTGAGAATAAAAGG
ATTGGGTTATGGAAAGGAATCTTCGCTACGTGGTTTAAAACTAGGAGGTCTTATTATTACCAGAA
TTCGCGATGTAACCCCAACGCCACATAATGGATGCCGACCCCCTAAAAAACGTCGTGTTTAAATA
TCATCATAAAGTGCTATGTCATCATAAAATGGTAGATAGAGCTTCGAGAGTAGAAAAAACTTTTT
TAGGGTCCGAGGGGGACTTATTTGGCTTCACGGGGCTTAACCCGTAAAGGCGAAGGAGGAAATTC
ACAAGCCATGTATGCCCTTTGGCGGCCCTTCGGACCCGCAAAGTG
Found at i:85317 original size:12 final size:12
Alignment explanation
Indices: 85300--85349 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
85290 TGCGGTGGAT
85300 ATATATCTATAG
1 ATATATCTATAG
* * *
85312 ATATATATAGAT
1 ATATATCTATAG
85324 ATATATCTATAG
1 ATATATCTATAG
85336 ATATATCTATAG
1 ATATATCTATAG
85348 AT
1 AT
85350 CAGGGTAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (12 bp):
ATATATCTATAG
Left flanking sequence: Indices 84800 -- 85299
AGATTCGAAAAGAGCCAAGCTATCCCAGCCCGCCATAAAATTGCTTACGATAGATATAGTACCCG
AAATCTACCCGCTAACATAAAGGAAGCATTGCTAAATGACTAAATTTCGCTAATATGACTAAATC
CCGAGGATTTGTAGATAAATATATCTAATTAATACTCCGCCTCATTGCTAATGACACCTTCGCTA
AATGACGCATATTTAGCTAATATGACCAGACGGGGATCTGTAGTATAATACGGAGAGGAATACCC
CCTAATATGGAATTGGAGGGTCCGTAAAGGAATATATAATAGGAATCTATATGGGATATGGATTT
AAATATATATATACATATATATTTGTGTATAACGGAGAAAATGCGTAAATCAAAAAGATTCTATT
ATTTATGGGAGAAACTATTAAATTCATGTTTATTCCTTCTTCGCCCATCTTCCAAAAGAAAATGA
GCTACTATTTTCCTTATTCGAGAGGGACGATGAGCTGCGGTGGAT
Right flanking sequence: Indices 85350 -- 85849
CAGGGTAGGAGATAACCTTGACCTATAACCTTCGAAGATACTAAGAGCCTGGATCCCGGGTCGGG
TTACCACGTTCTTAAGGTCTGTTATATAGGCCTCTAGTTTTCCCTTGGGAACGTCCAGAGACTTC
CATCGTGGAAGTGACGTAAGAACTCCGGGCGGGGATCATGGCACTTCTCCCGGAACCTTAGGGAC
GGTTTCGCTGGGAGCCCGAACTGGACTGAAGATGGGAAGCATAGATCGGGGGGGGGTACGAACAT
ATTTTTTTGGTCACGCAGTACGTACGGCCTGTAGGTCCCGTAAGCATCTCCTCCCTATGGAGTTC
GTAAACGGTGTCCGCTATATTCCGAAGATCCAGAATAATATCTGGTTGTTGGTTGCAGGGCGGGA
TATTTGGTTTTATGCGAGGGACGGCCACCACAAAACCGAAAAACTGTCCGACAGAACAAAGGGCA
CTTACTACCAACTCTGCCTCGGAATACCCTTCGGGAACCTCTGGC
Found at i:93255 original size:24 final size:24
Alignment explanation
Indices: 93226--93273 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
93216 TAATTATTGT
93226 TAGGCGCTGTGTTATTCATTACCA
1 TAGGCGCTGTGTTATTCATTACCA
93250 TAGGCGCTGTGTTATTCATTACCA
1 TAGGCGCTGTGTTATTCATTACCA
93274 CGGGAGGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
TAGGCGCTGTGTTATTCATTACCA
Left flanking sequence: Indices 92726 -- 93225
ATATGTACGTAGTTCAAGTTTTCGACCAATTCACCAAAAATTGTTTCGGTTGCCTGTAGCAGATC
GCTTGCTTTTAGGTTGGATTGGATGTCAACCTGTGGAAGCACCATATGTTACTATCGGACAAATT
GCTTCAGTGGGGTTTTTCTCCTATTTCGCTATAATGCCCATTCTTGGCAAATGTGAAGCCAGATT
AATCAAAAATTTTAATGCTTGCGAGGCCCATAGGGCTAGCAAGCTTTCTTTCGGTTATTGTATTA
TTGCTGCGCTACGCGCCTCCGGGCCTATGCAAGGCCTCGTAGGAGGAAGAAAAGCGCGCGGCCAA
AGGCCCGTGTCTAATCCAATGATAAAAGGCGCCTTTTATCGTATCGGCATCCTAGGGGCCGAAGA
GCGGCCCGAAGGCCCCGAAGGCGCTTGAGTAGCGGAACCCCTCCGGGCCTATTACATTGAAAAAT
AGCAATGATGTAGTTTACTTTAGGCTTTCTACAATTAATTATTGT
Right flanking sequence: Indices 93274 -- 93773
CGGGAGGCGCGTAGCGGGCGCCGCCCTCGGCGCGCGCCTTTCTCTCGCGCCGCGCCTTCGGCGCC
TCGTCCAGTGAAAGGAGGAGCCGGCGCCGCTCGAAGGCGGTTAAAAATTGATATATATCAATTTT
TGAAAAATATATATATATGAATGAAAAACAAATATATAAATATCTACCAGTTTTACGAAAGAAGA
AAGATACGATTTATGGATAACCAATTGTTTTTCAAATCTCTAATAGCTACTTCACCGAAAGGGAT
ACATAAATGTCGAACAACAGTATCTAGAGCACCTAAAAACTGCGCGAAGATGCCCGAGAGCATCC
AATTCCGAGCATTTGGCGGAACCGGTGAACCAGTTGTACGTTTGGATTTCCGAATGGCGCAGAGG
GCCTTTAGCTCTGAAAGGCCAAGGCCCCTTCTAAGCTTCAGATCTCCCGGCCCCGGTTCGGCCTG
GACCGAGCGTCTTCGCGCCCTTTGGAAACACTGTCAAAAAGAGCA
Found at i:98814 original size:12 final size:12
Alignment explanation
Indices: 98797--98824 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
98787 TAGGCCGTGT
98797 AGGCCGCGCCGA
1 AGGCCGCGCCGA
98809 AGGCCGCGCCGA
1 AGGCCGCGCCGA
98821 AGGC
1 AGGC
98825 GGTAGCGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.39, G:0.43, T:0.00
Consensus pattern (12 bp):
AGGCCGCGCCGA
Left flanking sequence: Indices 98297 -- 98796
TTTGGTTCGGATCTCGATGCTGCCACTCAGTATTTATTAAATCGTGGGGCTAGGTTAACTGAGAT
ACTTAAACAACCACAATATAGCCCAATTCCTATTGAAAAACAAATCGTGGTTATTTATGCAGCTG
TCAAAGGTTACTTAGACCAAATACCCGTCGTTCTCATAACGCAATATGAGCAAGAGCTATTGAAA
TCTATCGACCCAGGTATACTTTCTGCTATTGTACAACAAAAAAACATCACTGAGCAAATTAGTAG
TCAACTGGCTACCTTTTGCCAGAAATTTACGCAGAGCTTCTTAGCAACTCATCAATCGTAGAAAG
AGAAGAGAGCCCCGCGAATGGATAGGCCGGAGAGGCCAAATCGTAGCGGTAGGCCTCGATCGAAG
AGGGGCGAAGCAGCGTCTATTTGCTTCACCCCTCCCCCCTCCCTCTTTCAGGGTACCGGGTAGCC
ATGTGAATGAAGCGGCTTGTGAGAGAGGTAGAGCCTAGGCCGTGT
Right flanking sequence: Indices 98825 -- 99324
GGTAGCGCAGTTGCCGGGATTGATTAGAAGCTTGGCGCCTACTCAAGCGCGGCTTTCATCTTGGG
TTCTGTACTTGATGTTGAATTTCATTTATTAATTATTTATCGGCGCGCCCACGGCCCTTTGGGTT
GGTTTAGCCTCTCCGTAAGGTCGAGAGCGCCCTCGCCGCCTAAGGTCGAGACTCGCTATCGCTAC
GCACCAGCCCGCTCCCACCGAACTTGCAATAGTGAAATCCTTTAGGTTAGGGCGGGCGTTAGGGC
GGGCCCCGAGTTTTCGAGGATAAAAATATAATAGATACATAAAATATGACATTGTCATCAAATAT
ACAAATGGAACTCGAGGAAATGCCAGATAAAGGCGCTTGGTACAAGCATGGGGGCCGGTAATACC
CGGGATTAAATCCGCATCCGCCTCGGCCAAGCTCCCAACTTTCGGGGTGGGCCCCGCCCTATAAG
GACTAGGTCTGTATAGGGCGGAGCGGATCGGTGCTTAAGCTGCAC
Found at i:110312 original size:18 final size:18
Alignment explanation
Indices: 110289--110329 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
110279 GCGCCTCCAC
110289 GGAGCACCGCAATCGGGA
1 GGAGCACCGCAATCGGGA
110307 GGAGCACCGCAATCGGGA
1 GGAGCACCGCAATCGGGA
110325 GGAGC
1 GGAGC
110330 GCCCGAACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.41, T:0.05
Consensus pattern (18 bp):
GGAGCACCGCAATCGGGA
Left flanking sequence: Indices 109789 -- 110288
GATAGCTCTTCTTGTCGGACGATGTATATCCGGGCGCACCATTATAAAGTTGATGATTTCCACCG
AGAATTTGATTGCCGGGTTGTGCTAATTCCATACGAATTAGTACTGAAAAGCATGTACCCATTAC
TCCAGCAATGGCACCGAAAATTAAATATAGAGTACCTATATCTGTCGAGTAAAGGCGCTCCCGCC
CTTCTCGTGGAACCGTGCTTGATAGTCTCCCATCACACGGCTCTCCAAGAGCCTACTCTCGATTG
GACGTATGCACCTGGAATTTTATGGGGCCTACTCCCGATCCAATTCCCCAAACTGCAATTACCTA
TTGTGCAATTCATCGTGATATGATCCATACACGAAGGTATTTGCTCTATATTGATTTGATGGCAA
CCTCGACGCTTACATTACCGTAACCTTGGTCACTACCCCCGAAAGAAAGCATCCAGGTGTCTCTT
GCGCACATGGTGCATTTACACCCTGTCCTTAGAGCGCGCCTCCAC
Right flanking sequence: Indices 110330 -- 110829
GCCCGAACGTGGCGTAAATACGGTCCAGAGTCCGCATATCGGAGCCACATCGGATGCCCCTCAAG
AACATTCTTCCCATCCGTCGAATTTCGTTGGAGTTTAGAAAGCTTATTGTTTTTTTCCCCGCGTC
ATCCCTCACGACCACATCTCTCGATAATGCCCCGATGAGCTCCGTCGCCGATGCCTTATGCTTCC
CGGCCATTGTGTGTATCGGGGACCAGCGTAAAAAATAATCCACGTAGTCTCGTACCTTGTAAAAG
TTGGCACAGCGGCGATAATAACTCAATAGGTCTCGGGCTACGGCGTTAAACCAAAGCACAATGTC
TTTGTCGTTGAGTTGAATCAATCTAACCACACAACGAGGTTTATTATTCTCCGTAATCAGGCCCC
GCGATTTGAGCTTTTTCCTTATCTTTTTCAATGGAGCCAAAATTTGCAGGGATAGCGCCTCGTAT
CCTCCCACGCGTCGAGCCTTTCCCCTCTCCTTTTCGAAAGGGGTT
Found at i:115069 original size:24 final size:24
Alignment explanation
Indices: 115042--115135 Score: 179
Period size: 24 Copynumber: 3.9 Consensus size: 24
115032 TTATGTCTCT
*
115042 ATGATGATTCATCATTATTTATTA
1 ATGATGAATCATCATTATTTATTA
115066 ATGATGAATCATCATTATTTATTA
1 ATGATGAATCATCATTATTTATTA
115090 ATGATGAATCATCATTATTTATTA
1 ATGATGAATCATCATTATTTATTA
115114 ATGATGAATCATCATTATTTAT
1 ATGATGAATCATCATTATTTAT
115136 GATAATTTCT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (24 bp):
ATGATGAATCATCATTATTTATTA
Left flanking sequence: Indices 114542 -- 115041
ATCACACACTTTATTTTCGGTGAGCATTTATTATATAATGAGACGTAAAAGGTAGTATGAGAAAT
ACCATAATACATAATACAAAAAATGGCGTAAAGCACGCATAACCGAACGAATTGTGTCAAATAGG
TCAGGTGACCGAATTGAGGCCGAAGATGTAGGACGTTAGTTCTACATAACATTGATTTTCTACCT
GCAAGAAAAATGGAAAGAATTGGAATATAAGCGACTTCTATAGAATTTTTGAAAATATGGGCTAA
AGCCCCGCCGAGCTGTAGAAAAAATCGGAAAAGTGATATCTAGAACCGGACCTCGTGTTTTGTGG
GTTGCTCCCTTCCCATCTTTTTGTTTGTCTTCTCACCCGTCTTTGGCGGGAGTCGGATTCGAACC
CACAACATTCGGATTATGAGCCTGACGAGTTACCAATTACTCTATCCCGCGAACAGCCACCGAAA
AAAGAGATATATTCTCGTTCTTTGTTCATCGCCCTTTATGTCTCT
Right flanking sequence: Indices 115136 -- 115635
GATAATTTCTTCCCAATGAGGATTCATCATTATTTATCTACGATAATTCATCCCGATTTTCTATT
AGGAATTACACCAGATTCAACCCAGATTCGTCCAGGTTCAAAAGGAGGGAAAAAGGGGCGCGCCG
CAGCCCGCGCTAGCCCACTGGGTTAAAGTGACGGATACAATTTTGGCGTTTACCCAACTAAAGCG
ATTGGCTGGAGACGGTGGCTTCTGCACAGGCCATGAATTGGGGGTCTTATGGAGGAGGCACGTAG
ATTACCTTAGGCAACAACGGTCCCGCCGCAATCGGTAACGTAATGAAAAAGTACACAGGCACTAC
GTGCTTCCGAAGACACTTCTTTTAGTTTTTGGCCGGAGCGATCATTTCATGGAATGCAAGAAACG
CGAAAGTTTATAGAAGGGCTTAAGCTACGGCACCCAACCGGAGCTCCTCCCATATGACCTCGTTC
GGAGGAGTCTGTGACCCCCAAACCAGCTTGCCGAGAAACCCTTAG
Found at i:119835 original size:28 final size:28
Alignment explanation
Indices: 119802--119864 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
119792 TATTATCATA
119802 TTATTTCGCAAATAATAAGAAATTATTT
1 TTATTTCGCAAATAATAAGAAATTATTT
***
119830 TTATTTCTTTAATAATAAGAAATTATTT
1 TTATTTCGCAAATAATAAGAAATTATTT
119858 TTATTTC
1 TTATTTC
119865 TTTTGCCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (28 bp):
TTATTTCGCAAATAATAAGAAATTATTT
Left flanking sequence: Indices 119302 -- 119801
CTATCGCGAAGCTATCCCCCAACCATCGGGATTGTTTACCACCGCGCCCGTTGTGTGAATTCATA
CAACGAGTTCGTAAAGCCGCCCGCCCCGTAAACCTAAAGGAGTCTCGGTACCCTTCTCTCTTAGC
TATTTCGTCGTGGAAAGACGAACGAAGTGAGCTTTAACCCACTGGCATGGCTATCTCATACTCGA
CTGGACTAGATTTGCGAGGATATGGTCGGATTTTTTTCGTAAGCCATCTGCGTTTGTCTAATAGC
ATTTTTTTATTCTACTAATGCTATTCTGCTCGTATATATATTTCCCTCCGATAAAGTGCGTTGCC
CGGGCGTGGACCATGTCTCCCGAAATTGATGAATCAGTACATATGGTCTAAGACGATTTCACATA
TCGAGGTCGAAATGGGATCGGGTGTTTTCGCATCTTACCATAGTGCCCGGCTTCAAATTTTTTTC
CTTTGATCTTTTCAAAAAAATAATCTAATTTATTTTATTATCATA
Right flanking sequence: Indices 119865 -- 120364
TTTTGCCTATCGGAAGAGGGATTCGAACCCCCGTGTGCGAATTATGATCCCGCTGTTCTACCCTA
CTAAACTATTCCGACATGCTGATTATGATCCCGCTGGTGTAATAATCTACCGCTTCCTAGTTGTT
GGGTTAGAATTCGCTTTACGCCCTGTGCCCTCCCCCATCTAGGCGGCTATGATCGCATAGCCCGA
AATAGAGTAGGCGGCCATCACCACGAAGGCTGCAATACAGGTCTTTATAAGCTTGATTGCCCGTC
CCCCCGGCCTACGGCAAATTGAGCCAGCGGGCTCTGGTCGGACACTCCTCCCTCTTGGGTAAGGT
TAGGGGGTGCGTAAGCGCTGTCAGACGGGAGACGGCTGAAAGAAGGGTTTGGGGCCAAGGACTAG
GCGCTCCGTCTGGGGCACGGCCGGCGGCGGTTCATCAATACTTAAATTGTACAAATGGGTCTTCG
AAGGATAGCTGGAAGTTCCTCAAAAGTATTAAATGATGGAGGGCC
Found at i:119865 original size:28 final size:28
Alignment explanation
Indices: 119812--119867 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
119802 TTATTTCGCA
119812 AATAATAAGAAATTATTTTTATTTCTTT
1 AATAATAAGAAATTATTTTTATTTCTTT
119840 AATAATAAGAAATTATTTTTATTTCTTT
1 AATAATAAGAAATTATTTTTATTTCTTT
119868 TGCCTATCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (28 bp):
AATAATAAGAAATTATTTTTATTTCTTT
Left flanking sequence: Indices 119312 -- 119811
GCTATCCCCCAACCATCGGGATTGTTTACCACCGCGCCCGTTGTGTGAATTCATACAACGAGTTC
GTAAAGCCGCCCGCCCCGTAAACCTAAAGGAGTCTCGGTACCCTTCTCTCTTAGCTATTTCGTCG
TGGAAAGACGAACGAAGTGAGCTTTAACCCACTGGCATGGCTATCTCATACTCGACTGGACTAGA
TTTGCGAGGATATGGTCGGATTTTTTTCGTAAGCCATCTGCGTTTGTCTAATAGCATTTTTTTAT
TCTACTAATGCTATTCTGCTCGTATATATATTTCCCTCCGATAAAGTGCGTTGCCCGGGCGTGGA
CCATGTCTCCCGAAATTGATGAATCAGTACATATGGTCTAAGACGATTTCACATATCGAGGTCGA
AATGGGATCGGGTGTTTTCGCATCTTACCATAGTGCCCGGCTTCAAATTTTTTTCCTTTGATCTT
TTCAAAAAAATAATCTAATTTATTTTATTATCATATTATTTCGCA
Right flanking sequence: Indices 119868 -- 120367
TGCCTATCGGAAGAGGGATTCGAACCCCCGTGTGCGAATTATGATCCCGCTGTTCTACCCTACTA
AACTATTCCGACATGCTGATTATGATCCCGCTGGTGTAATAATCTACCGCTTCCTAGTTGTTGGG
TTAGAATTCGCTTTACGCCCTGTGCCCTCCCCCATCTAGGCGGCTATGATCGCATAGCCCGAAAT
AGAGTAGGCGGCCATCACCACGAAGGCTGCAATACAGGTCTTTATAAGCTTGATTGCCCGTCCCC
CCGGCCTACGGCAAATTGAGCCAGCGGGCTCTGGTCGGACACTCCTCCCTCTTGGGTAAGGTTAG
GGGGTGCGTAAGCGCTGTCAGACGGGAGACGGCTGAAAGAAGGGTTTGGGGCCAAGGACTAGGCG
CTCCGTCTGGGGCACGGCCGGCGGCGGTTCATCAATACTTAAATTGTACAAATGGGTCTTCGAAG
GATAGCTGGAAGTTCCTCAAAAGTATTAAATGATGGAGGGCCTCG
Found at i:131876 original size:21 final size:21
Alignment explanation
Indices: 131852--131901 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
131842 CAAAAAAACC
131852 TTTTTTTTTTACGAAAATATA
1 TTTTTTTTTTACGAAAATATA
* *
131873 TTTTTTTTTTACGAAAATCTC
1 TTTTTTTTTTACGAAAATATA
131894 TTTTTTTT
1 TTTTTTTT
131902 CCTGCTCCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTTTTTTTACGAAAATATA
Left flanking sequence: Indices 131352 -- 131851
GTCACAATGTGTTTGTCCTCCGAAGAAGCCAATCGTGGATTGGAGGTTGCCCGAGCTAAGCCCTT
GGCGTTTTTTCTCGCGTATCCAAGTTCCAAGGCTTTAGTTATTAAGTCCTTTATGGGAGCTATTA
GTTGTGGACGAGATCGGAGTCTTACTCGGTTGACATCGGATATTTCGTCAGTGCTTGAGATTTCC
ACACTTCGGGTGCCGTAATATATTACTAATGCACCCAAGTATTTGGCCATCCCGGACTTTGCGTG
TAAGATTTTATGTTCGTTTATGTCCAACTCCAGTTCTTCCCGCAAGAAGTTTTGCACGGCTTTTA
TAATATCTAGGGCATCTCGTTTGGTGCCCATAACACCTAAAATTATGTTATCCGCGTACCGTAGG
TACTTAAGTCTTTCCAATCCCTCTTTCTCAACCATTTCTGGAAGCGTCTCTCGGCCCAAAGGGCA
GGAAACTTTAGGGTTTCGGAAAAAGAAGAAATTTCCAAAAAAACC
Right flanking sequence: Indices 131902 -- 132401
CCTGCTCCCGGTTCATCCACTCTAGGTGTTTGATGTTTTTGATGGCCTGCCCCAATTCTGTATAG
TACTTGAAGAAGGCCTTGTCTTTCGAATGGATATCAGGCCTTTTCCTACTATATTCTGCCGACGC
GAGGCGCATATTCGCTACATTGTATTTGGGTACGAGTATGTCTTCGACGTAGCAATCCAACTTAT
GTAAGGAGATATTGGCACAAAGCGGGGATATTATAGAACCCTGCGGAACGCCCTCTGTGTTGTAT
CGCGTTCGATCCGTAAGGTTATATACATCTATGTATCCTGCGTTGAGTAGCTTTCGCATAAGATC
TTCTAGTGCTTTAGATCGCAGTACTGATTCCATCTCCCCAATAAGCAGGTCGTGATGAATCTTGT
CAAAGTCTTTCTTAATATCAATTTGTACAAGCCAAGTGGGTGCCGTCCACGAGTAACGGAGGTCT
CGCAGGGCTTCATGACAGCTTCTGCCGGGGCGGAACCCGTGGCTT
Done.