Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_036467
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 394341
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:26371 original size:24 final size:24
Alignment explanation
Indices: 26339--26385 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
26329 AAGCAGCGCG
* *
26339 TCGTGCTATAATCGGACACTTCCA
1 TCGTGCTATAAGCGGACAATTCCA
*
26363 TCGTGCTATGAGCGGACAATTCC
1 TCGTGCTATAAGCGGACAATTCC
26386 GAAGAAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
TCGTGCTATAAGCGGACAATTCCA
Left flanking sequence: Indices 25839 -- 26338
TAATTGAATCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCT
TTTCAACCGAGGAACAAAACAAGATCATTTCGTTCCATTTTTAGTAAAATAGTGAAGGATATTCC
ATTAGTAATGAAAAAAGGGGTGGAGGGGATCCGTATATGTTGTTCAGGTCGATTAGAAGGTGCAG
AAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATA
GATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATA
TAGTAAAAAAAAAAAGGGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATCGTAAAGGC
AGATGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAG
TTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCG
Right flanking sequence: Indices 26386 -- 26885
GAAGAAATGGTAAGATATGGGTAAGAGTTCTCGCAGATATCCCTATTACCGGGAAACCTACAGAA
GTAAGAATGGGAAGAGGAAAGGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCAGGGGACAAAT
CCTATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATA
AACTATGTTCGTCAACCAAGTTTGTTCAGTGGTCGTAAGCTTATAAATCTGACCCAAATTCTCCA
TTTTGGTACACGCCAAAGCGTTCCATTTCGGCGGATTGAAAGAGCCATCAATCACTATGATCTCT
TTCTTAGAAAAGAAATTGCGTAAATTCTTCCTTTTTTTCTCCCATGCTTTCCGTTGGTCAACAAC
CAACTAAAGTGCTCTATACTTCTTCACTACTCGTACAGGGAAGGTGGAAGAAATGAAGTCTCTCT
TTTTTTTGGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACCAAA
Found at i:87196 original size:66 final size:66
Alignment explanation
Indices: 87090--87286 Score: 306
Period size: 66 Copynumber: 2.9 Consensus size: 66
87080 GCTGGTTTAG
87090 GCCAGCTTCGGAAGCGCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAGCTAG
1 GCCAGCTTCGGAAGCGCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAGCTAG
87155 A
66 A
87156 GCCAGCTTCGGAAGCGCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAGCTAG
1 GCCAGCTTCGGAAGCGCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAGCTAG
87221 A
66 A
*** * *
87222 GCCAGAGCCGG-AGCCGGAGCCTAGCGAGTTTGCCCCGCTTTCTAGGAAGGATGTCCAGCCAGAG
1 GCCAGCTTCGGAAG-C---GCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAG
87286 C
62 C
87287 CAGGGCTGGA
Statistics
Matches: 122, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
65 2 0.02
66 75 0.61
69 45 0.37
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.17
Consensus pattern (66 bp):
GCCAGCTTCGGAAGCGCCTAGCGAGTTTGCCCCGCTCTCTAGGAGGGATGTCCAGCCAGAGCTAG
A
Left flanking sequence: Indices 86590 -- 87089
CCCGAAGATAGAAAGCGCCCGGTCCTCTTCTCTTGTGTCGAAGTGTAGTGTAGTGTAGTGTGGTG
AGGTTTTGCCTCACAGAAAGAGTGGGAGAAAAAAAGGAAGAATTTTCTTTCTTAGAAAAGCAGGA
GATCATAGTCCTTGATGGCTCTTTCAAGGCGGCGAAATGGAACGCTTTGCCTTGTACCCAACTGG
AGAATCTCCTTCAGATACAAAGCGTAAGTCCTTTGACTAAGCGACTTTCCCCTTGGAGAGAAGAG
GAGCCCTCTGATCAGATTTCTCTTCGCAAGAAGAGAACCAGGGGAATAGCCGTCGTTCACAAGTG
TGCTTTCTACATTCTTTTCTATTTGGATTTGAATGCGAACAACGGAGTTCAGCATTTCTTCTTCG
TAATCTTCCCCCCATAAAATACTTCTCATCCGGTTAGTGAGCTCCGCTCTCCGGATGTTGTCATC
TAGAAAGGGAGGGTGGAGTTCCGGAATAAGAGGGGGCTGGTTTAG
Right flanking sequence: Indices 87287 -- 87786
CAGGGCTGGAAGGCCCGTTGGAGGGTACATATTCTACCCATTCCGGATCCTTATCCATATAGTGG
GATAGTAGCTGCAGTTCAGAAGGGAGAATAGCAAATAGGGAATGAAGTAAAATAGCATCAAACAA
GTTAGCATAGATCCTATATCCAAAAGTTACCAAGCAATAAAGACATATGAACCATTTCAGAATAG
AAAGAGCCCGCTGTAACTTGGGCCTTGTTATATAGTAGAAAAATAGTTTCACTTCTAAATCCAAA
GGGAGATAGAACCTAATAAGAATGAGGAAAAGGCATGACCAGAAGAATTGTGTGAAATAAGTGAA
TTTATCCAGTTGAGGCATTCTTGATTGATTGAGACAAAACGATTCCCTCAATACAGCTTAACTCC
GTCAAGCCTGTACGAGTAGTGAAGAAGTATAGAGCACTTTGGTTGGTTGTTGACCAACGGAAAGC
ATGGGAGAAAAAAAGAGAGAACTCTTTCTTTTTTATTATGATTGG
Found at i:90068 original size:16 final size:17
Alignment explanation
Indices: 90036--90081 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
90026 CATCCCTTGG
90036 GGTTAGTTCATTCTCTT
1 GGTTAGTTCATTCTCTT
*
90053 GGTTAGTTGA-TCTCTT
1 GGTTAGTTCATTCTCTT
* *
90069 GCTTAGTTTATTC
1 GGTTAGTTCATTC
90082 CATTTACTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.13, C:0.15, G:0.20, T:0.52
Consensus pattern (17 bp):
GGTTAGTTCATTCTCTT
Left flanking sequence: Indices 89536 -- 90035
CCGAATTCTCTGTCATTTTCTGTAATATTTAGTGTTGTAAGATGTTGTAATAAATGTTATAGTTG
AAAGAAATTCCACCTCTGACTTTTCTCATCCCTTAGCTCTTTGATGAGCTCTTCGAGAGTAATGA
AATAGGCGTAGGCTCAATGACTCTTGAAAGTGAATATCGCTCGCAATGGCCACCCTGATAGTTGA
ACCCTTCAACGGAAAATTTCGTATGCTAGCTCCAATGAGTAGTAGAGGAAAGCTCGGCCTCAGTG
CGTCCTACTTGTGTCGTGTTTTAAGCCTGCTATGCATCCTTGCTCCATCTACCATTCCTTACAAT
CCATTTCTGGTATGCCCGCTGCTTCGTCCAAAATTACTGACAATCCATCCTATCTTTATTGGGAT
CATACCCCCTTGGACTTTATTTAAATCCTATTTTTTTTATGTTTTAGGAATTATTCCCTGGGCTT
TCAATGGGACCATGCCTTGGATTTCAATCTGAGATCATCCCTTGG
Right flanking sequence: Indices 90082 -- 90581
CATTTACTGCCCCTCTTTTGCTTGATGAAAGACATCCCGGCAAAGGCCTTGTATATTAGTCAAAA
AAGGGGACTCTCATGGGTCCGATGGCTCTTTGACTGGTGTGCCTGAAAATGTGATTGATAAATGG
GCTTTTGAAACTCGATTTGTCGCAACAATCTGTCTCCGCCTTTTCAAGTAGGGATCATCTCGGCA
GTACAGGCAGTTATGATCCTACATTGCTGCTCGGTAGTGGCCTAAGGTTCAATGATTTATCTTCT
GCGCTAAGGCTAGCATCTCATCCCATCTTTCATCTTATTGCTTTGAGCTCTCTTCGGGAAAGTGT
CAAAGTCTAACCTGCTGCTCCTTGATTTCACATAAAAAACGGAGTGCCTTCTGCTCCTTTTGCTC
TTCTCTTTCTGTGTCTATTGATTTCCCGCCCACTCACATTTTCTTTATCGAATCTTTCTAGGCAG
ATAGGACAACTCCTGCTTGCTCTTGGCCTTGGCTGCTTAGAGACA
Found at i:112507 original size:17 final size:18
Alignment explanation
Indices: 112481--112515 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
112471 GTAGTAAGGC
112481 ACATGTTCGAAAAAGGTG
1 ACATGTTCGAAAAAGGTG
*
112499 ACATG-TCGAGAAAGGTG
1 ACATGTTCGAAAAAGGTG
112516 GAATCGTCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.37, C:0.11, G:0.31, T:0.20
Consensus pattern (18 bp):
ACATGTTCGAAAAAGGTG
Left flanking sequence: Indices 111981 -- 112480
CGATCTCTTTCTGCATAGAGCTGCCAGCAGGGTTGAGATATGGCCTCTGCAAAGGTATCAGGTTA
AAAAAGATGGATGAAATTGCAAAAAAGACTCGTGGGAAGTAGACAGAGACTTAGTTGATACAAAC
CTATGAATAGGAAAACGAAGACGGGTGGATCTACGTACCCCGAGAATAGAAGCTAGAGAACCTAA
GTCTGAAGAAGAGTCTTGGTTCGAAGTATAGGGAGAGAGGGAGACCACTGAATCAGTTGGCTCAG
CTCTGAAAACTGAGTGACGAGAATCTGTCTTCACAAACCTGCGAAACTTCCCCTTAAGCTGATCA
AGCTGCTGATCACTCTGGTCACCCGGATCTTGCTGACTCTATTAAATCGGAGAATTCTGGTGCTG
TCTCACATAAACTCCTCAATAGTTCCACCCCTCCCCTCTAAGGGGAGACAAGGGAACATAATGGC
CCACCATCACAGGGAATCTCAAAGCCCCGAGCTCCGTAGTAAGGC
Right flanking sequence: Indices 112516 -- 113015
GAATCGTCGTGTAGAAGGATCATTAACACTTGTAGCCCTTTTGAGAGGGGGGTACCCCAACCTCA
CTCAAGAAAACACATAGAGTGAGATGTAGGGCTCAGTTTGTCTTGTGCAGGAGATGGAATTTTAA
CAAAGCACGTGCATCCGAATACTCTGAGGTTTGAATAGTCATCTCTTTGAAAGAGAGTAAAACGC
CCAAAGATAACGTGTAGAGGAGATCGCTCACCAATAATAGGAGCCATCGTCTTCTTACTCAGATA
AGCGGCCATCATTAAATTGGCTTTACTAGGGATCCTATAATAGGGAACTTTCATTCCCAGTAGAA
GTCCTCGAGCAACTTGCCTAATACTAATAAATAAGGGGAAGGCCCAACATTTTATATTAGTATAA
GGAAGGCGCTAGCTAGCGCCCAACCTATACAAGGGCTTTCCACCTCCATTTGGTCGTGCTGCTAT
GATGTAACGTGCAGTCGTCCCAAGGCAGCAGGATGTATGGTATAG
Found at i:136333 original size:15 final size:15
Alignment explanation
Indices: 136313--136342 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
136303 ACATGAGGCC
*
136313 GTGTATTTAAATACT
1 GTGTATTCAAATACT
136328 GTGTATTCAAATACT
1 GTGTATTCAAATACT
136343 ACTGACTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (15 bp):
GTGTATTCAAATACT
Left flanking sequence: Indices 135813 -- 136312
GTTACGGTAGTTTTTTCTCCGTTGGAATGGAATCAAAGGGATACGGATATGATTACTGCTCAACT
TACTCCTCAATACTAGCTTCTTCCTTAACATACCGAGGATCTGTTACCGGTGAAAATCTTGGTTT
AGGAATGGCTTACCCAGGTTTAGTAATGCAATTTAACTCAGGACGTATAAGAAGATGCACCCAAT
CAAAGTCTTTCTTCTATATCATCTAGATCATCTAGGGCACGAACGGTATATTCTTAGTTGTTTTC
CCCAGTCTTAGCCTAAGTATTGTTAGTGGAGTTACCTGGCCATTCTTCCGGCCTGTATGGTATCA
ACTAAATAGAATGAGTTTCCTCCGAAAACTGAGGAATTGATTAGACAAATTGAAGTCTAAATCTT
AGTAGCACAAATTACACTCTCAAGATTAGTAACCCAGTTCAGGATTTTAATCTCTACATACGTAA
TTTAAACAACTGTGAATAAGTCCTATCCTATCTTAACATGAGGCC
Right flanking sequence: Indices 136343 -- 136842
ACTGACTTTGATTCCCCAGTAACTAATTAGAAGCCGACTCTTTCTCCTGCTAACTACTTTAACCT
ACTTCCGATTGATCTATTCCCCGATGCAGCTACTAAAACTTTTTTTAATGACTTAAGGACTTACG
ATTGCTCTATGCACCGGACGGGATCAGAGATAGGAGCTAGATGGAGGAATATCAAGGATGGACGT
GTAACCCAATCCAATAGAAGTGTATAAGTAGGCCTTTCTATCAATCTATGCTTGTAAGTCAGTCT
ATGCTATGTAGGTGTATTAGTTGTCTGAACAAAGACTCATAAGCACGATTTGACTCCCTCTTAAA
GGCTTGCCTTGGAAGAGAAATCTTCATACTTGCTTCCTTCTCAATCTATAGGGCTTAGGCCCAGG
GTTCCTAGTTGTGTTGAGAGTCCCGGTTTGGATCTGTCTTAGTTACCTTCGAGCTCAATAGCCGA
AATAGACAGAACTCAACCCACTATTGAGGACTAGGCAGATCATAG
Found at i:167296 original size:16 final size:17
Alignment explanation
Indices: 167277--167313 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
167267 CAAGAAGAGG
167277 ACCAAAAAG-AAAGACC
1 ACCAAAAAGTAAAGACC
*
167293 ACC-AAAAGTAACGACC
1 ACCAAAAAGTAAAGACC
167309 ACCAA
1 ACCAA
167314 GATAGGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 12 0.67
17 1 0.06
ACGTcount: A:0.57, C:0.30, G:0.11, T:0.03
Consensus pattern (17 bp):
ACCAAAAAGTAAAGACC
Left flanking sequence: Indices 166777 -- 167276
CCTGATATCCAAAGGAGGATAGAGCTTCAACAGCGATTGTCGCTCTATTTCATTGGTAGGAACGA
GGCCAGGCACCTCCCGCCCTTTTTGGGTATTTTGGAGAAACAAATGCTGCTGGAAAAAAAGATAG
AAGCAGCATTGGTGCGGGATGGGTTTCCCCCCCATATGGTTCTGGCTTGGAGGTCAGAAATCCGC
GGCCTCATCTTTAACCACCCTACTAGGGAGGCTGCGCTTTCTGAGAATACCTTAAATAGGTATTT
GAGCCAGATCGAAAGAGATGGCACTCGTCAGAGCCAGCCCTATCTTAGGCTGGTTCGGGCGATCC
GCAATGCGGAGATTCTCTATGGGACGAGAAATAGGAGACCCCCTTTTTGGCCTTTCTGAAGTGTG
GCCCACACACGGCCAGGAGGAAAAGAAAAGGGGGGGCCTTAGCCCTTAGAATCGAATTCTAAACC
GGCGTGGTGCTGCTGGATGCTTCTGATCAATAGAACAAGAAGAGG
Right flanking sequence: Indices 167314 -- 167813
GATAGGCATAGTAATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTTATATGAAAATAAAGAAAGAATTTCTGGTCATAAAAAC
AGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAGATTGCCGACTGGATGCTCCTACCCCACCATGCCTGGCCCTTTA
TCTTACCTTAAGAAGAAAGAGGAGGTATGAAGCGTGGGACAGAATGCAAGAAGTGATACAACAGA
TAACCTTATTAAGGAGTGGCGGCAACCCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGACG
CTTCGTAAAACCGCACCGATCTACGAGAGGAGCTGATAGATGAGT
Found at i:324409 original size:15 final size:15
Alignment explanation
Indices: 324377--324420 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
324367 TGCTTAATCT
324377 TAATAT-TAT-TATAA
1 TAATATATATATA-AA
324391 TAATATATATATAAA
1 TAATATATATATAAA
324406 TAATATATATATAAA
1 TAATATATATATAAA
324421 CAAAGAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.21
15 20 0.71
16 2 0.07
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TAATATATATATAAA
Left flanking sequence: Indices 323877 -- 324376
CATTTGAAAGGAAAGGCCCTTTGTATAGAGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCA
CTCTAACCGACTGAGCTATTTCCCCCTTTCGTCGCTACTTTGATTCAAAAGTAACCTACCGGCCT
ATTAGTTTACAAAGTCAACATCAGAGAGTATTCTTAACAGCTGTACTAATGCCGTTCGCCTTTGG
TACTTCAGTAGGGCTTGCATACGAAGGGCTTGCGGGGTGAACGGCATTCTGTTGTACTACTAACA
CTAGCTGTACTAGAGTAGTTTAGTAGCGCCTTTTGAATCAAAGAGGCTCACCCTTTCCGAAAGGC
GAACAGCCTGCTTTGCAAGCAAATATATAGCCCCCGCCCCTTTGAGTCGTTGCGAGCCGGAAAGC
GTACCGGCTGTTTGAGTCACGAAAGGAACAAGCAACGGATTGATTAAGCGCTAACGCGCTCAAGC
CTATAGCGTTAGCCTCGCGCATCCGTTTTCTTGCTTGCTTAATCT
Right flanking sequence: Indices 324421 -- 324920
CAAAGAAGAAAATCCTTTTTTTATCCAATTGTTCATTCCTGGGAAGAGAAAGAAGCAGATAGAGC
AAGGGCCGCTACAATTGCTTTAGCGCTAGGTCTCTCGAGCCTTGCCTTTTTCCATGTCTCCCGAA
GAAGATTAAGAGCTGAAAGCGAATTCCCAATTATCTGACACTGGATCAGTAGAAAAACCTTTGTC
ATTACAATAGGAAATAGATGCGAAGCTGTTCATTTATCCAGTTGAGACTGCAACAATTTCTTTTG
CGGGAACCGAAACAAGAGCTTGAACAGGAGCTGCTGTCGATATTGGCAACGTTTTTAGGGAGCTC
TTTGGGAGCGAAATGACTGACGCGCTAGGAGTGGTCTTTAAGAGCCTGCTTTCGAGTCACCCGGT
GAATTTACCAACCCTGTTCGACTTCATCGCTACGCCCCTTACCTCTTCATTGGGAGCAGGTTGAC
TACAGAGGGTTCCCCCCTAATTGAACTCAAGCTTCTTTTTATGCT
Found at i:366302 original size:17 final size:17
Alignment explanation
Indices: 366259--366304 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
366249 GCAGTAAATG
*
366259 GAATAAACTAAGCAAGA
1 GAATAAACTAACCAAGA
*
366276 G-ATCAACTAACCAAGA
1 GAATAAACTAACCAAGA
*
366292 GAATGAACTAACC
1 GAATAAACTAACC
366305 CCAAGGGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.52, C:0.20, G:0.15, T:0.13
Consensus pattern (17 bp):
GAATAAACTAACCAAGA
Left flanking sequence: Indices 365759 -- 366258
TGTCTCTAAGCAGCCAAGGCCAAGAGCAAGCAGGAGTTGTCCTATCTGCCTAGAAAGATTCGATA
AAGAAAATGTGAGTGGGCGGGAAATCAATAGACACAGAAAGAGAAGAGCAAAAGGAGCAGAAGGC
ACTCCGTTTTTTATGTGAAATCAAGGAGCAGCAGGTTAGACTTTGACACTTTCCCGAAGAGAGCT
CAAAGCAATAAGATGAAAGATGGGATGAGATGCTAGCCTTAGCGCAGAAGATAAATCATTGAACC
TTAGGCCACTACCGAGCAGCAATGTAGGATCATAACTGCCTGTACTGCCGAGATGATCCCTACTT
GAAAAGGCGGAGACAGATTGTTGCGACAAATCGAGTTTCAAAAGCCCATTTATCAATCACATTTT
CAGGCACACCAGTCAAAGAGCCATCGGACCCATGAGAGTCCCCTTTTTTGACTAATATACAAGGC
CTTTGCCGGGATGTCTTTCATCAAGCAAAAGAGGGGCAGTAAATG
Right flanking sequence: Indices 366305 -- 366804
CCAAGGGATGATCTCAGATTGAAATCCAAGGCATGGTCCCATTGAAAGCCCAGGGAATAATTCCT
AAAACATAAAAAAAATAGGATTTAAATAAAGTCCAAGGGGGTATGATCCCAATAAAGATAGGATG
GATTGTCAGTAATTTTGGACGAAGCAGCGGGCATACCAGAAATGGATTGTAAGGAATGGTAGATG
GAGCAAGGATGCATAGCAGGCTTAAAACACGACACAAGTAGGACGCACTGAGGCCGAGCTTTCCT
CTACTACTCATTGGAGCTAGCATACGAAATTTTCCGTTGAAGGGTTCAACTATCAGGGTGGCCAT
TGCGAGCGATATTCACTTTCAAGAGTCATTGAGCCTACGCCTATTTCATTACTCTCGAAGAGCTC
ATCAAAGAGCTAAGGGATGAGAAAAGTCAGAGGTGGAATTTCTTTCAACTATAACATTTATTACA
ACATCTTACAACACTAAATATTACAGAAAATGACAGAGAATTCGG
Found at i:369208 original size:66 final size:66
Alignment explanation
Indices: 369054--369250 Score: 306
Period size: 66 Copynumber: 2.9 Consensus size: 66
369044 TCCAGCCCTG
* * ***
369054 GCTCTGGCTGGACATCCTTCCTAGAAAGCGGGGCAAACTCGCTAGGCTCCGGC-TCCGGCTCTGG
1 GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGG---C-GCTTCCGAAGCTGG
369118 CTCTA
62 CTCTA
369123 GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGGCGCTTCCGAAGCTGGCTCT
1 GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGGCGCTTCCGAAGCTGGCTCT
369188 A
66 A
369189 GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGGCGCTTCCGAAGCTGGC
1 GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGGCGCTTCCGAAGCTGGC
369251 CTAAACCAGC
Statistics
Matches: 122, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
65 2 0.02
66 76 0.62
69 44 0.36
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.20
Consensus pattern (66 bp):
GCTCTGGCTGGACATCCCTCCTAGAGAGCGGGGCAAACTCGCTAGGCGCTTCCGAAGCTGGCTCT
A
Left flanking sequence: Indices 368554 -- 369053
CCAATCATAATAAAAAAGAAAGAGTTCTCTCTTTTTTTCTCCCATGCTTTCCGTTGGTCAACAAC
CAACCAAAGTGCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTAAGCTGTATTGAGG
GAATCGTTTTGTCTCAATCAATCAAGAATGCCTCAACTGGATAAATTCACTTATTTCACACAATT
CTTCTGGTCATGCCTTTTCCTCATTCTTATTAGGTTCTATCTCCCTTTGGATTTAGAAGTGAAAC
TATTTTTCTACTATATAACAAGGCCCAAGTTACAGCGGGCTCTTTCTATTCTGAAATGGTTCATA
TGTCTTTATTGCTTGGTAACTTTTGGATATAGGATCTATGCTAACTTGTTTGATGCTATTTTACT
TCATTCCCTATTTGCTATTCTCCCTTCTGAACTGCAGCTACTATCCCACTATATGGATAAGGATC
CGGAATGGGTAGAATATGTACCCTCCAACGGGCCTTCCAGCCCTG
Right flanking sequence: Indices 369251 -- 369750
CTAAACCAGCCCCCTCTTATTCCGGAACTCCACCCTCCCTTTCTAGATGACAACATCCGGAGAGC
GGAGCTCACTAACCGGATGAGAAGTATTTTATGGGGGGAAGATTACGAAGAAGAAATGCTGAACT
CCGTTGTTCGCATTCAAATCCAAATAGAAAAGAATGTAGAAAGCACACTTGTGAACGACGGCTAT
TCCCCTGGTTCTCTTCTTGCGAAGAGAAATCTGATCAGAGGGCTCCTCTTCTCTCCAAGGGGAAA
GTCGCTTAGTCAAAGGACTTACGCTTTGTATCTGAAGGAGATTCTCCAGTTGGGTACAAGGCAAA
GCGTTCCATTTCGCCGCCTTGAAAGAGCCATCAAGGACTATGATCTCCTGCTTTTCTAAGAAAGA
AAATTCTTCCTTTTTTTCTCCCACTCTTTCTGTGAGGCAAAACCTCACCACACTACACTACACTA
CACTTCGACACAAGAGAAGAGGACCGGGCGCTTTCTATCTTCGGG
Found at i:381971 original size:44 final size:44
Alignment explanation
Indices: 381923--382008 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
381913 TGACTCCTAC
381923 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
*
381967 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCCCCTTTG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTG
382009 GTGAGCTGAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (44 bp):
CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
Left flanking sequence: Indices 381423 -- 381922
CCGAATTGCTTACCCGCGGAACTCATTTAACCCGACCCTGCATAAGTACCAATGCCCCTTCCCCT
TTCACCTCTAGGAAAAACTTCTGGGATGAGCCCTTCTACTCGTAATTTTTATATTAGAGGGAAAA
TTCTCGATCCCAGACCAGGCTCCGATCAAGGCTTATAAAAGCATCAACCTCATCCTAAAAGGACT
CCTTTAGCTTTGGGGTTGATTTACGTGGCTCAAGACTTTGAGTCAAGAGGTCAGGTGTTCAGAAA
GGTGGTGATGCGGCATTGGCATTTTCAGCAAATTCATCAGATAGCTTGCCTTCTTTTCGTTTACG
TGGCTACATACTTGTAGCGATCAAAGGGCATATTTATTATTATTTATTATTTATATAAGGAAAAG
GTAATTGTATGGGCCTTTGCTTCGAGAACAATCGTATTAGCGCCTTCGCAGCCTGCCTTTCCATT
CTTCGAGTGCAGTTCCTTCTTGAGCCTTTTCTTTTTGACTCCTAC
Right flanking sequence: Indices 382009 -- 382508
GTGAGCTGACCTTCTTGTGTCACGAGTGATGTCAAACCTCCTTCTTGTCTTCTATTCCGGGAAGT
GGTATAATAGGTCCCCTAAGGGAAGCCCTTTGGCAGCTGTCCGAGCCTTCCCTTGATTGTGCCTT
TAGGCTTTTCTTCTTGCTGCTTTGTTTGCGCTTTCGAATCCGCTTCTGTAAAGAAAGGAGAAGAG
AGAGGCGTCGGCTAACTAAGGACGATGATGGAAACTATCCCAGGAAGGTGAGCAAGAAGAGTCTT
CACTACTAGCTAGTATTGAAAGAAAAGAAGGCCTACCTTCGCTTTGTGCGCTAAGAGCTTTCTTT
CCTGTAGGATAGGAAGAATGGAATAGGAAGATAAAAGGACATTCTTCAGAGTGAAACTGAACCAG
ACAAAGGCCCTTCTCTCCGTGATCAACTTCCTTTCGTAGTACCCATACCCCCAGGGGAATTCGAA
TCCCCGCCGCCTCCTTGAAAGAGAGGTGTCCTAACCACTAGACTA
Done.