123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_030753
Parameters: 2 7 7 80 10 50 500
Length:  524797

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26355--26397	18	2.4	18	81	18	54	18	20	25	34	1.96
32481--32509	14	2.0	15	93	6	51	13	27	31	27	1.94
40296--40333	20	1.9	20	84	10	51	15	39	21	23	1.92
53178--53277	30	3.3	30	94	0	164	7	33	35	25	1.83
53181--53289	30	3.6	30	90	2	94	7	35	32	24	1.83
67902--67964	33	1.9	33	87	12	94	52	1	0	46	1.10
67949--68010	33	2.0	32	87	9	92	45	1	0	53	1.10
68042--68089	21	2.3	22	78	7	55	52	4	0	43	1.20
95974--96019	22	2.1	22	100	0	92	13	36	19	30	1.90
127204--127240	6	6.2	6	100	0	74	16	16	0	67	1.23
146339--146393	27	2.0	27	100	0	110	43	21	10	23	1.84
173211--173257	12	3.9	12	85	0	58	36	6	36	21	1.79
180015--180114	30	3.3	30	94	0	164	25	35	33	7	1.83
200658--200690	15	2.1	16	88	5	50	3	9	30	57	1.45
202443--202491	8	5.9	8	81	9	62	59	0	4	36	1.17
202444--202491	18	2.8	17	81	6	53	60	0	4	35	1.16
202448--202491	12	3.7	12	81	0	52	59	0	4	36	1.18
203748--203783	18	2.0	18	88	0	54	8	25	25	41	1.83
203779--203831	27	2.0	26	88	3	79	9	20	22	47	1.79
261068--261146	31	2.5	31	78	8	106	7	26	26	39	1.83
262624--262679	28	2.0	28	82	6	69	30	30	32	7	1.84
268439--268481	22	2.0	22	85	0	59	30	18	27	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316090--316132	18	2.4	18	81	18	54	18	20	25	34	1.96
345690--345782	31	3.0	31	83	1	114	32	17	26	23	1.96
354763--354795	4	8.2	4	87	12	50	75	0	24	0	0.80
370450--370493	24	1.9	23	90	9	72	29	9	20	40	1.83
371046--371151	32	3.4	32	71	15	112	1	43	19	34	1.62
371020--371164	62	2.3	62	100	0	290	1	41	21	35	1.62
371142--371381	39	6.2	39	99	0	471	5	40	17	36	1.72
371168--371386	48	4.5	48	72	11	97	5	41	17	36	1.73
376107--376281	90	1.9	89	95	4	316	18	31	33	16	1.93
411064--411105	16	2.6	16	80	0	57	11	28	14	45	1.80
416444--416481	12	3.1	12	92	3	58	42	23	18	15	1.89
447281--447453	90	1.9	90	100	0	346	19	30	34	16	1.94
456289--456327	20	2.0	19	85	5	51	17	30	35	15	1.91
464710--464874	31	5.2	32	69	21	91	9	33	17	39	1.83
464737--464872	31	4.4	31	71	21	115	9	35	16	38	1.82
464758--464872	32	3.7	31	69	17	96	8	37	16	37	1.80
465266--465344	27	2.9	27	70	20	65	13	22	29	34	1.93
490627--490681	21	2.6	22	74	8	60	34	27	16	21	1.95
491626--491655	14	2.1	14	93	0	51	46	13	26	13	1.80
497856--497942	41	2.2	39	87	8	122	11	28	29	29	1.92
504751--504805	27	2.0	27	85	0	74	10	23	38	27	1.88
513874--513916	20	2.2	20	100	0	86	30	13	4	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513882--513920	10	3.9	10	80	12	53	30	12	7	48	1.69

Tables:   1

The End!