123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_048974
Parameters: 2 7 7 80 10 50 500
Length:  346363

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31191--31258	28	2.4	28	82	0	82	25	29	17	27	1.97
46598--46695	28	3.5	28	67	10	83	22	32	19	25	1.97
46579--46708	56	2.3	56	98	1	251	20	33	18	27	1.96
53868--53978	29	3.8	29	100	0	222	17	31	13	37	1.88
81431--81528	28	3.5	28	67	10	83	25	19	32	22	1.97
81418--81547	56	2.3	56	98	1	251	27	18	33	20	1.96
81459--81547	28	3.2	28	66	12	83	30	17	33	17	1.94
85712--85757	23	2.0	23	100	0	92	17	26	17	39	1.91
119749--119807	24	2.3	26	86	13	79	18	37	10	33	1.85
120688--120746	24	2.3	26	86	13	79	33	10	37	18	1.85
120742--120886	28	5.2	28	61	12	82	25	20	33	20	1.97
120729--120914	56	3.3	56	99	0	363	27	20	32	19	1.97
120770--120914	28	5.2	28	61	12	82	28	20	33	17	1.95
129498--129540	18	2.4	18	81	18	54	34	25	20	18	1.96
131007--131113	28	4.0	28	66	16	82	30	19	27	22	1.98
131034--131140	51	2.1	51	89	0	160	31	20	28	19	1.97
131143--131201	24	2.3	26	86	13	79	33	10	37	18	1.85
131160--131339	81	2.2	81	98	0	351	28	16	33	21	1.95
131225--131338	28	4.2	28	62	22	71	29	16	33	20	1.95
131160--131292	25	5.1	25	67	17	76	27	15	34	21	1.94
145606--145703	28	3.5	28	67	10	83	25	19	32	22	1.97
145593--145722	56	2.3	56	98	1	251	27	18	33	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145634--145722	28	3.2	28	66	12	83	30	17	33	17	1.94
153364--153422	24	2.3	26	86	13	79	33	10	37	18	1.85
153418--153515	28	3.5	28	67	10	83	25	19	32	22	1.97
153405--153534	56	2.3	56	98	1	251	27	18	33	20	1.96
153446--153534	28	3.2	28	66	12	83	30	17	33	17	1.94
154813--154881	28	2.5	28	82	0	84	27	18	28	24	1.98
154916--154945	15	1.9	16	93	6	53	46	10	13	30	1.75
172214--172322	33	3.3	33	100	0	218	8	44	13	33	1.74
200431--200500	28	2.5	28	83	0	86	24	28	18	28	1.98
212214--212325	24	4.4	24	85	12	127	32	12	37	17	1.88
212357--212470	28	4.2	28	62	22	71	29	16	33	20	1.95
212373--212424	25	2.1	24	86	10	70	28	13	36	21	1.91
236338--236407	28	2.5	28	83	0	86	24	28	18	28	1.98
263671--263759	28	3.2	28	66	12	83	17	33	17	30	1.94
263671--263800	56	2.3	56	98	1	251	20	33	18	27	1.96
263690--263787	28	3.5	28	67	10	83	22	32	19	25	1.97
266703--266761	24	2.3	26	86	13	79	18	37	10	33	1.85
275512--275623	24	4.4	24	85	12	127	32	12	37	17	1.88
275553--275725	53	3.0	53	66	18	148	28	16	35	19	1.93
275708--275805	28	3.5	28	67	10	83	25	19	32	22	1.97
275695--275824	56	2.3	56	98	1	251	27	18	33	20	1.96
275736--275824	28	3.2	28	66	12	83	30	17	33	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280541--280609	28	2.5	28	82	0	84	27	18	28	24	1.98
292166--292234	30	2.3	30	94	0	120	39	24	15	20	1.92
296345--296369	12	2.1	12	100	0	50	48	8	0	44	1.32
312744--312812	28	2.5	28	82	0	84	24	28	17	28	1.97
318808--318845	20	1.9	20	88	0	58	73	2	13	10	1.19
326360--326471	24	4.4	24	85	12	127	32	12	37	17	1.88
326401--326573	53	3.0	53	66	18	148	28	16	35	19	1.93
326556--326653	28	3.5	28	67	10	83	25	19	32	22	1.97
326543--326672	56	2.3	56	98	1	251	27	18	33	20	1.96
326584--326672	28	3.2	28	66	12	83	30	17	33	17	1.94
327951--328018	28	2.4	28	82	0	82	27	17	29	25	1.97
330068--330143	39	1.9	39	94	0	134	22	25	19	32	1.97
330461--330529	28	2.5	28	82	0	84	24	28	17	28	1.97
330517--330566	23	2.2	23	82	7	57	22	26	16	36	1.94
334389--334457	28	2.5	28	82	0	84	24	28	18	27	1.98
335924--335966	18	2.4	18	81	18	54	18	20	25	34	1.96

Tables:   1

The End!