Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MT784750
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 159012
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Found at i:4697 original size:15 final size:16
Alignment explanation
Indices: 4672--4706 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
4662 AAAAAGAGTG
4672 AATTGTTTATTTATTA
1 AATTGTTTATTTATTA
4688 AATT-TTTATTTATTA
1 AATTGTTTATTTATTA
4703 AATT
1 AATT
4707 AAAGATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (16 bp):
AATTGTTTATTTATTA
Left flanking sequence: Indices 4172 -- 4671
CGCCAAGAATTCAAACTTGGTTTTGTATCGATTGAACAAGAATAACATATTATCAATATTATCAA
TTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAGGATCAGTCGTGGTCTTACAAACTCTC
CCGAAGATTTGGACGAATCCTTTGCTTCATAGAAATGTGTAAAAGAAGCTAGCCGTACTTAAAAG
CCGAGTACTCTACCGTTGAGTTAGCAACCCAAAGAATTCAAGTGGGTAAATAGAATCGGAATAAA
AAGAAATAAACGAAATGAAATTTCACAATCGAATCAAAATATTAAACTAGCAACAACTCAAAAAA
AATTCTAATTGATTCTGAACATAAAAAGAAAAAAAAAAACCATAGGAACGAGATAAATGGGTTCA
TTTCTCCACGACCGAATTATATTTGGTCAATACATTATTGTCAATATGACATTAAATATCAAGAT
TGAAAAAATACTAAAAAAAATACACTGACGAAAACAAAAAGAGTG
Right flanking sequence: Indices 4707 -- 5206
AAAGATATAATAAATATAAAAATAGATAAAGAATATCTAAAGGATTAGATAAATAAAAAGAGGAT
TAGATAAATAAAAAACTTTCGGAATACTTTTTTAGATAAATATTAAAAAAAAAAAACGAAAAGAA
ATAGGTATGAATAGAACAAAAAAAGGAGGGGGGTAGGAAGATAGTCACGAAAAAAGTCTACAAAA
CTATATAAGACTCCCCCACACCCTCTTTTTTTGTTCTATTCCTTAATCGAATTTCGTTTGATTAA
GACTAAGTTTTGTAAAAACCCCCGCTTTCTTTGAAATATCATGAACGGTTCTTGTAAGTTGGGCG
CCCTTGTCAAGGAAATATAGAATAGCAGGAACATTTAAATGGGTTTGATTATTTATCGGATCATA
AAAACCCATTTTCCGAAGATCCCTTCCTTCTCTTCGGGATCGACCATCAATTGCAACGATTCGAT
AAACGGCTCATTGGGATAGATATAGATGAAGAATACCCCCCCTAG
Found at i:4770 original size:20 final size:20
Alignment explanation
Indices: 4747--4785 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
4737 GAATATCTAA
4747 AGGATTAGATAAATAAAAAG
1 AGGATTAGATAAATAAAAAG
4767 AGGATTAGATAAATAAAAA
1 AGGATTAGATAAATAAAAA
4786 ACTTTCGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.18, T:0.21
Consensus pattern (20 bp):
AGGATTAGATAAATAAAAAG
Left flanking sequence: Indices 4247 -- 4746
ATGCTGTTTTTTCCATTCATTCCTTTCAGGATCAGTCGTGGTCTTACAAACTCTCCCGAAGATTT
GGACGAATCCTTTGCTTCATAGAAATGTGTAAAAGAAGCTAGCCGTACTTAAAAGCCGAGTACTC
TACCGTTGAGTTAGCAACCCAAAGAATTCAAGTGGGTAAATAGAATCGGAATAAAAAGAAATAAA
CGAAATGAAATTTCACAATCGAATCAAAATATTAAACTAGCAACAACTCAAAAAAAATTCTAATT
GATTCTGAACATAAAAAGAAAAAAAAAAACCATAGGAACGAGATAAATGGGTTCATTTCTCCACG
ACCGAATTATATTTGGTCAATACATTATTGTCAATATGACATTAAATATCAAGATTGAAAAAATA
CTAAAAAAAATACACTGACGAAAACAAAAAGAGTGAATTGTTTATTTATTAAATTTTTATTTATT
AAATTAAAGATATAATAAATATAAAAATAGATAAAGAATATCTAA
Right flanking sequence: Indices 4786 -- 5285
ACTTTCGGAATACTTTTTTAGATAAATATTAAAAAAAAAAAACGAAAAGAAATAGGTATGAATAG
AACAAAAAAAGGAGGGGGGTAGGAAGATAGTCACGAAAAAAGTCTACAAAACTATATAAGACTCC
CCCACACCCTCTTTTTTTGTTCTATTCCTTAATCGAATTTCGTTTGATTAAGACTAAGTTTTGTA
AAAACCCCCGCTTTCTTTGAAATATCATGAACGGTTCTTGTAAGTTGGGCGCCCTTGTCAAGGAA
ATATAGAATAGCAGGAACATTTAAATGGGTTTGATTATTTATCGGATCATAAAAACCCATTTTCC
GAAGATCCCTTCCTTCTCTTCGGGATCGACCATCAATTGCAACGATTCGATAAACGGCTCATTGG
GATAGATATAGATGAAGAATACCCCCCCTAGAAACGTATAAGAAGTTTTATCCTCCTACGGCTCG
AGAAAAAAATGGTTAGAAATGATAGTTATGTCTATGTATAAAATT
Found at i:8371 original size:16 final size:16
Alignment explanation
Indices: 8350--8380 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8340 TAAATTGATT
8350 ATATAGCTCATAGAAA
1 ATATAGCTCATAGAAA
*
8366 ATATAGCTTATAGAA
1 ATATAGCTCATAGAA
8381 TATCTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (16 bp):
ATATAGCTCATAGAAA
Left flanking sequence: Indices 7850 -- 8349
TTTTTCCTTTTACCCCAAAAAATTATTTGGAGATTGTGTAATGCTTACTCTCAAACTCTTTGTTT
ACACCGTAGTGATATTCTTTGTTTCTCTCTTCATCTTCGGATTTCTGTCTAATGATACAGGGCGT
AATCCCGGACGCGAAGAATAAAAAAAAGAAGGAGTTGCTTGCTTTAGTCGTATAAATGTTCTTAG
GGTTTTCTCAATTCCACATCTGTTACTATTCAAAAAAAAAAGGAAAAGTATTCGCTAAAAAAGAT
ACGAAACAATCGACTGAAACGGAAAGAGAGGGATTCGAACCCTCGGTACAAATAACTCGTACACC
GGATTAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAAATTACTA
TGTTACATTACACAAAAAATAATGCTTGAAAAAAGACCGCCTTTACTTTATTTTAGATCTTTCCT
TTCTATATTCTCGATATTATCGAGAATATAGAAAGTAAATTGATT
Right flanking sequence: Indices 8381 -- 8880
TATCTTTTTTTTATTGTCTTGTGTATTCTATTATATAAATAGAAATAGATTAAATAGAAATAGAT
CTAACTTTTATCAACAATTCCATTTCTATCATTTATAGAAAATTCAAAGACAGAGAGCATTTGAA
AGAGATAAAATAGAAAAAAATAAAGAAAAGAATATCCCTTTAATTTCGTTCAACGAGGCCCTTTT
TATTTCCACTTCGACGGCCTGGCCTGGTCAGTACCCAGCCGGGCCCTTTTTTCTGTTCTAATGAA
CCATACCGCCCAACCATCGAAAAAATGCGAACCATACCATAAACAAAAATTATTTATTTTGATTT
GATTTGAAAACCCAAAAATGAAACTTGTTATTGTGTTCAAAGAACAAGAAAAAGAAGTACTATTT
CCATTCCTATGATGATAGAGAATTAGAATCAAAGTGTCATTTCTTATTATTCTTTCGTTTCTTTT
TTTTCATCTCCATTTTGTTGACTTTTACTGGAAAAAATACTGAAA
Found at i:8436 original size:15 final size:15
Alignment explanation
Indices: 8416--8445 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8406 TTCTATTATA
8416 TAAATAGAAATAGAT
1 TAAATAGAAATAGAT
8431 TAAATAGAAATAGAT
1 TAAATAGAAATAGAT
8446 CTAACTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (15 bp):
TAAATAGAAATAGAT
Left flanking sequence: Indices 7916 -- 8415
CACCGTAGTGATATTCTTTGTTTCTCTCTTCATCTTCGGATTTCTGTCTAATGATACAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAAAGAAGGAGTTGCTTGCTTTAGTCGTATAAATGTTCTTAGG
GTTTTCTCAATTCCACATCTGTTACTATTCAAAAAAAAAAGGAAAAGTATTCGCTAAAAAAGATA
CGAAACAATCGACTGAAACGGAAAGAGAGGGATTCGAACCCTCGGTACAAATAACTCGTACACCG
GATTAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAAATTACTAT
GTTACATTACACAAAAAATAATGCTTGAAAAAAGACCGCCTTTACTTTATTTTAGATCTTTCCTT
TCTATATTCTCGATATTATCGAGAATATAGAAAGTAAATTGATTATATAGCTCATAGAAAATATA
GCTTATAGAATATCTTTTTTTTATTGTCTTGTGTATTCTATTATA
Right flanking sequence: Indices 8446 -- 8945
CTAACTTTTATCAACAATTCCATTTCTATCATTTATAGAAAATTCAAAGACAGAGAGCATTTGAA
AGAGATAAAATAGAAAAAAATAAAGAAAAGAATATCCCTTTAATTTCGTTCAACGAGGCCCTTTT
TATTTCCACTTCGACGGCCTGGCCTGGTCAGTACCCAGCCGGGCCCTTTTTTCTGTTCTAATGAA
CCATACCGCCCAACCATCGAAAAAATGCGAACCATACCATAAACAAAAATTATTTATTTTGATTT
GATTTGAAAACCCAAAAATGAAACTTGTTATTGTGTTCAAAGAACAAGAAAAAGAAGTACTATTT
CCATTCCTATGATGATAGAGAATTAGAATCAAAGTGTCATTTCTTATTATTCTTTCGTTTCTTTT
TTTTCATCTCCATTTTGTTGACTTTTACTGGAAAAAATACTGAAAAAAAAGGAAAAATGGAACTA
GGGATTTTTTCACAATCCACTTCCTTTAGTATTAGGACTTAAGTT
Found at i:28817 original size:20 final size:20
Alignment explanation
Indices: 28792--28833 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
28782 CGACGCGACT
28792 CTTTACACTATTCTAAATAG
1 CTTTACACTATTCTAAATAG
28812 CTTTACACTATTCTAAATAG
1 CTTTACACTATTCTAAATAG
28832 CT
1 CT
28834 GGGGTTTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (20 bp):
CTTTACACTATTCTAAATAG
Left flanking sequence: Indices 28292 -- 28791
TTCCAATTGAAACCCAAGAGTAGGTGATGAATTTATAGTCACTAGTTAATGGTTCAAATTTGGCC
TGAATTTTGGCTTTGGTGACTGAAAATACACATTTCTTTTTTCAATAGAAAAAAAAAAAAAAGAA
AGAGAGGTATTAAGATATTGTGTGTTTTGAGAAACTCTAAAATAAATTGCAGAAATGGAGACCCT
CCAAAAAAAAGAACGATTTTTTTTTATTTTAGGCAAGGAATTAAGAAAAACGAGATTTCAGAGGG
AAGTAAAAAAAAAGACATTGAGTACCCCCCAAAACAAAACAAGCAAAGGGGGAATTTTTTCATAT
ATTTTGGATCATTTTGGCGACATGGCCGAGCGGTAAGGCGGGGGACTGCAAATCCTTTTTCCCCG
GTTCAAATCTGGGTGTCGCCTGATCAACAAACGATAAGACTCGAAATCCCCTATTCCGCTCGGCT
GGTCTAACTCGCAGAATATTTTGCAGCAAAGTATGCGACGCGACT
Right flanking sequence: Indices 28834 -- 29333
GGGGTTTCTGCTCTTTAAAGTGCTGTCAATCTTTGCATTTTGAATTCACGGAAAGATTATAGTAG
TGGAAGTGCTATCATATCAAATCAAGAGTTACCGATTTATTTCCACTGCTAATGTAGGGTCTACT
GACCGGGTCTTGAATTAGATTGAATAGCCCGAGGGAGAATCGAATTAATAGTTATGGAAGGGCCA
GGAGCTACTTTGTAGACATTATACATAGTATACAGACTCATGAGAGTCTCTGAGCGTACGGGCAT
TCAATCAATATTTGATTGGGTGGATAATTGGCTAATGATAATCATACTTAATTATAATCAAGGGC
AACAAAAAAAACGAAGAGGTCTTATTATTACTACATATTAGGTCCCATTCTCTTTGATACTTCCA
AAGAAAAGTGCGGCTGTGTATTTTGTTTCGTTTTACCGATTTGACTAGAAATCATATACGAACTT
GTTCTAAGTGGATTTATTGGAGCGCTTCATATTTATTGGAGTCTT
Found at i:29676 original size:16 final size:16
Alignment explanation
Indices: 29635--29677 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
29625 TTAATTTCAT
*
29635 TATATTAATTATTAAA
1 TATATAAATTATTAAA
*
29651 TATATTAATTATTAAA
1 TATATAAATTATTAAA
29667 TA-ATGAAATTA
1 TATAT-AAATTA
29678 ATATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 2 0.08
16 23 0.92
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TATATAAATTATTAAA
Left flanking sequence: Indices 29135 -- 29634
TCATACTTAATTATAATCAAGGGCAACAAAAAAAACGAAGAGGTCTTATTATTACTACATATTAG
GTCCCATTCTCTTTGATACTTCCAAAGAAAAGTGCGGCTGTGTATTTTGTTTCGTTTTACCGATT
TGACTAGAAATCATATACGAACTTGTTCTAAGTGGATTTATTGGAGCGCTTCATATTTATTGGAG
TCTTTCATCAAGGGTGTTGTGTTGGGTCAGAATCCCTTTTTGACTCTGCGCCAGTGATTCCACTA
TTATTAGGAAACAATAATGGAATAATTTCTTCATATTTATAAAGATAGGGGACATAATTGACATG
GATATAGTAAGTCTCGCTTGGGCTGCTTTAATGTTAGTCTTTACATTTTCCCTTTCGCTCGTAGT
ATGGGGAAGAAGTGGACTCTAGAGATACTACTAATTGAGTTGGGAAATCAAACAGTATCACTTTT
TTTCTAGATCGTTCTGCAAAGCCTTTTTAATTATATTAATTTCAT
Right flanking sequence: Indices 29678 -- 30177
ATATAATATTTAATATATTTAATTCAGTAATTTAATTCCATTTAGAATTTCAAAATGAAATTAAT
CAAAATATCTTCATTTCAGAATTCTATTGTCTTGGAGTCTAGCGAGGTAATTGTATTTGATTCTA
TTGTGAATCGAATACAATTCATAATCTATATGAATAATACTCTTTCAGAATCCAAATCAAACAGA
TATTTCACAAATTCCCCTATTCCCATTTTGAAAGGAAAGGGGATATGAATAATAGGAATTTTATT
CCTACCGAAGTCTTCCTAAATTTTCTATTTCGTTTTTATGAACCGGCCCTTCCCGGAGTTATATA
TGGACAATGAGGAAGAACGCGGAAACCCGGACTCCTTTTGACTTTTTTCTTTATTGGCCTTTTTA
CTGTTCAAAGAGAAAAGAAAGGAGTTCGCGATTTAATATTTAATAATAATCAGATTGTGCCTAGA
TCAAGTCACAGATTTCGCACTTACCACTTGTTTGATTATTTTCGA
Found at i:29679 original size:20 final size:16
Alignment explanation
Indices: 29635--29668 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
29625 TTAATTTCAT
29635 TATATTAATTATTAAA
1 TATATTAATTATTAAA
29651 TATATTAATTATTAAA
1 TATATTAATTATTAAA
29667 TA
1 TA
29669 ATGAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TATATTAATTATTAAA
Left flanking sequence: Indices 29135 -- 29634
TCATACTTAATTATAATCAAGGGCAACAAAAAAAACGAAGAGGTCTTATTATTACTACATATTAG
GTCCCATTCTCTTTGATACTTCCAAAGAAAAGTGCGGCTGTGTATTTTGTTTCGTTTTACCGATT
TGACTAGAAATCATATACGAACTTGTTCTAAGTGGATTTATTGGAGCGCTTCATATTTATTGGAG
TCTTTCATCAAGGGTGTTGTGTTGGGTCAGAATCCCTTTTTGACTCTGCGCCAGTGATTCCACTA
TTATTAGGAAACAATAATGGAATAATTTCTTCATATTTATAAAGATAGGGGACATAATTGACATG
GATATAGTAAGTCTCGCTTGGGCTGCTTTAATGTTAGTCTTTACATTTTCCCTTTCGCTCGTAGT
ATGGGGAAGAAGTGGACTCTAGAGATACTACTAATTGAGTTGGGAAATCAAACAGTATCACTTTT
TTTCTAGATCGTTCTGCAAAGCCTTTTTAATTATATTAATTTCAT
Right flanking sequence: Indices 29669 -- 30168
ATGAAATTAATATAATATTTAATATATTTAATTCAGTAATTTAATTCCATTTAGAATTTCAAAAT
GAAATTAATCAAAATATCTTCATTTCAGAATTCTATTGTCTTGGAGTCTAGCGAGGTAATTGTAT
TTGATTCTATTGTGAATCGAATACAATTCATAATCTATATGAATAATACTCTTTCAGAATCCAAA
TCAAACAGATATTTCACAAATTCCCCTATTCCCATTTTGAAAGGAAAGGGGATATGAATAATAGG
AATTTTATTCCTACCGAAGTCTTCCTAAATTTTCTATTTCGTTTTTATGAACCGGCCCTTCCCGG
AGTTATATATGGACAATGAGGAAGAACGCGGAAACCCGGACTCCTTTTGACTTTTTTCTTTATTG
GCCTTTTTACTGTTCAAAGAGAAAAGAAAGGAGTTCGCGATTTAATATTTAATAATAATCAGATT
GTGCCTAGATCAAGTCACAGATTTCGCACTTACCACTTGTTTGAT
Found at i:33872 original size:17 final size:17
Alignment explanation
Indices: 33851--33905 Score: 92
Period size: 17 Copynumber: 3.2 Consensus size: 17
33841 TCTCTATATA
33851 AGATTTATATATAAATC
1 AGATTTATATATAAATC
* *
33868 TGATTTTTATATAAATC
1 AGATTTATATATAAATC
33885 AGATTTATATATAAATC
1 AGATTTATATATAAATC
33902 AGAT
1 AGAT
33906 CGTGGCTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (17 bp):
AGATTTATATATAAATC
Left flanking sequence: Indices 33351 -- 33850
GAATTTAATGATAATAGGTTATCGTTATAATGACTTATAATATAGCACTTAGAATCGTAATTCTA
CGCTTAAAAGAAAGTTGAAGATTTGTTTATTAGAATGAGTAATTCTAAATCGTCTCTTCTATCAC
CAAATATTTTTTTTTTCATTATTCCAATCTAATCCATTGTAAAGATTCAAAATCAACAAAAAAAA
GTAAGTGGACCTAACCCGTTGAATCATGACTATATCCACTATTCTGATATTCAGATTTTAAATTC
GATAGATATGAAATTAGAACAGTCGATCTTTTTTTATTTGATATTTCTTGGGACTCCGCAAGAAT
CCGTCGCTATTTCCGATTCAATCCTCTTTTTTCTAGGCGTTCCATACTAAGAAAGGGTTATTACA
AGTTCCAAGACAAGAGCTATTTCCAAGATCTTGCTTTTTCTTTGATTCCCGAACCGAACACAAGA
AGATCAATTTTGATCTCTATCTAATATCTAATTTATCTCTATATA
Right flanking sequence: Indices 33906 -- 34405
CGTGGCTTCATGTATCAAATATTTTCATATCAAGGGATACGATCTTTTTGTTTTGTTCCGACAAT
GTTAGGAGAGTGGACGTGAGAAAGAAACTTTCATTTACAGTCTCCTATTATTTAATTTAATATTG
TATTGAATTTTAAAAAGAAAAATGAGACAAATATTTTGATTTTTCTCAATCGAACGAACAAGATC
CAAGAATAAGACTAGTTGATAGAGCGAGAGGAGTAGGAGTAGGTCTGGGTATCAACCAGTAAGGA
GAGAGGGGGTCGCTTCTTCTGAAGAGTTCTTTCAAAAAATTAATCAATCTCATTAATGAGTCATA
ATAAGGCAACTCGTGGTTCAGTTTCAAACGATTATTAGCAATAAACAATAGGGCGGAATAAACGA
ATAGAGTTCATGGATTTATCTAAGTCAGGCTATGGACTAATAAAGGATTTTTTTATCTTCGAAAC
CAATTAGAAGGGGCAGTGTACGGTACGAGAAATCAAATCATACCT
Found at i:38044 original size:16 final size:16
Alignment explanation
Indices: 38013--38055 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
38003 CAAATTCGAT
38013 TATTCGAAAGAATAATAA
1 TATTC-AAA-AATAATAA
38031 TATTCAAAAATAATAA
1 TATTCAAAAATAATAA
*
38047 TAATCAAAA
1 TATTCAAAA
38056 TTAGAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 16 0.67
17 3 0.12
18 5 0.21
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (16 bp):
TATTCAAAAATAATAA
Left flanking sequence: Indices 37513 -- 38012
ATTCATGGTAAAATCCCCCTATGATGCATTCTATTCAACTTTTTTGGCTGATAGAGGGATCAAAT
GGTATAGTTCTTTTTTTTGTTGGTAGCTTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGG
CTGTTTTTGCATTAATTGCTACTTCATCAATCTTACTGATTAGTGTACCCGTTGTATTTGCTTCT
CCGGATGGTTGGTCGAGTAACAAAAATGTCGTATTGTCTGGTACATCGTTGTGGATTGGATTAGT
CTTTCTGGTGGGTATCCTTAATTCTCTCATCTCTTAAATCTATTCGTTCCAAATCAAACAATGAA
ATGACCCCTCCCCCTCCTGCGAATACGAATTTTTCGGGTTGTGAGACACATTAAAATTCACTATA
AGTCTCCAAAAGGCAAATAAAGAAAACACAAAAAAAATTCGTGGGAGGGGTCAAACTTCTGGAAC
TTGAATGAAAAATAAACAATTAAATTAGATTATTTCAAATTCGAT
Right flanking sequence: Indices 38056 -- 38555
TTAGAGAATTCAAATCTATTTACTAGACTTCTAATAACGATAATCGAATTATCTAATTATTAATA
GAATAATTAATAGATAATAGAAATAAAATATTGAAAACTATTCAATAATGAATTTATATTAATAT
TGACAATTTCAATATTTACTTGGCTTTCATTTAAATTGTTTTTAATTGGTATTGTTTTTAATTGG
TTTGGTAGTGGAATTGAAATTGATGGGAATTACCCTGAAGAGAGTATCTGGACTAACTCGAGATA
AAGATTTTCCAGACATTTCAAGGAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCA
AGGAGAAGACGCGGGTTCGATTCCCGCTATCCGCCATGGGAAAGGAATATAGGTAATAGGATAAA
AGATTCTTTATAGTTGACTGTGATAGTATAATGGTTCTATCTTTCCACACCAACAGAAAAAGAAA
AGGGTTAATTACTAGTTAACAGAATCAAACCTTTTCTTTTTGTCA
Found at i:38241 original size:16 final size:16
Alignment explanation
Indices: 38220--38251 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
38210 TTTCATTTAA
38220 ATTGTTTTTAATTGGT
1 ATTGTTTTTAATTGGT
38236 ATTGTTTTTAATTGGT
1 ATTGTTTTTAATTGGT
38252 TTGGTAGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (16 bp):
ATTGTTTTTAATTGGT
Left flanking sequence: Indices 37720 -- 38219
TCGAGTAACAAAAATGTCGTATTGTCTGGTACATCGTTGTGGATTGGATTAGTCTTTCTGGTGGG
TATCCTTAATTCTCTCATCTCTTAAATCTATTCGTTCCAAATCAAACAATGAAATGACCCCTCCC
CCTCCTGCGAATACGAATTTTTCGGGTTGTGAGACACATTAAAATTCACTATAAGTCTCCAAAAG
GCAAATAAAGAAAACACAAAAAAAATTCGTGGGAGGGGTCAAACTTCTGGAACTTGAATGAAAAA
TAAACAATTAAATTAGATTATTTCAAATTCGATTATTCGAAAGAATAATAATATTCAAAAATAAT
AATAATCAAAATTAGAGAATTCAAATCTATTTACTAGACTTCTAATAACGATAATCGAATTATCT
AATTATTAATAGAATAATTAATAGATAATAGAAATAAAATATTGAAAACTATTCAATAATGAATT
TATATTAATATTGACAATTTCAATATTTACTTGGCTTTCATTTAA
Right flanking sequence: Indices 38252 -- 38751
TTGGTAGTGGAATTGAAATTGATGGGAATTACCCTGAAGAGAGTATCTGGACTAACTCGAGATAA
AGATTTTCCAGACATTTCAAGGAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAA
GGAGAAGACGCGGGTTCGATTCCCGCTATCCGCCATGGGAAAGGAATATAGGTAATAGGATAAAA
GATTCTTTATAGTTGACTGTGATAGTATAATGGTTCTATCTTTCCACACCAACAGAAAAAGAAAA
GGGTTAATTACTAGTTAACAGAATCAAACCTTTTCTTTTTGTCAAAAAAGAACAAAATGTTGCGG
AGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGCTGCTCTACCCC
GCGATCAAGAGAAGAACTGGGAACTAATGAACAAGCCTAATGAACAAGCAAGGATTGAATGCGCC
CCTTTTCCATACCTGTACAAATAGAATAGCCAATTTGTCCAGAAT
Found at i:38683 original size:13 final size:13
Alignment explanation
Indices: 38665--38690 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38655 GAACTGGGAA
38665 CTAATGAACAAGC
1 CTAATGAACAAGC
38678 CTAATGAACAAGC
1 CTAATGAACAAGC
38691 AAGGATTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
CTAATGAACAAGC
Left flanking sequence: Indices 38165 -- 38664
ATAATGAATTTATATTAATATTGACAATTTCAATATTTACTTGGCTTTCATTTAAATTGTTTTTA
ATTGGTATTGTTTTTAATTGGTTTGGTAGTGGAATTGAAATTGATGGGAATTACCCTGAAGAGAG
TATCTGGACTAACTCGAGATAAAGATTTTCCAGACATTTCAAGGAAAAATGCGGATATAGTCGAA
TGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTCCCGCTATCCGCCATGGGAAAG
GAATATAGGTAATAGGATAAAAGATTCTTTATAGTTGACTGTGATAGTATAATGGTTCTATCTTT
CCACACCAACAGAAAAAGAAAAGGGTTAATTACTAGTTAACAGAATCAAACCTTTTCTTTTTGTC
AAAAAAGAACAAAATGTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCG
AGCTACCAAGCTGCTCTACCCCGCGATCAAGAGAAGAACTGGGAA
Right flanking sequence: Indices 38691 -- 39190
AAGGATTGAATGCGCCCCTTTTCCATACCTGTACAAATAGAATAGCCAATTTGTCCAGAATGGTA
AAGGGGCCCCTCTATGATCACAGATCATAGAAATCAATCAAAAAAAAAGAAGGGATATTTTAATC
CTTACCAACTTGATCTTGTTGCCCCCGGCAACAAACATGCATGAACCATTTCACGAAGTTTGTGC
CCGGATAGTCCAAAGTCTCGATAGTTAGCTCTCGGCCTTCCGGTCGAAAAACAACGTCGATGAAG
ACGTGTAGGTGCACTATTACGCGGTGAGGACTGTAGCTTTCCATGAATTTTCCATTTATCGCTCA
ACGACGGAACTTTGTTTATTTCTTTTTTTGAGGATCGACGAATCAAATGATATTTTTGTTCCAAC
TTTTGCCTTTTCTTCTTCCTCTGAATCAAACTTTTCCTTGCCATAGCGGTTCAGTTCCTATTATT
ATCAATGATACAAGTCGGATCCTAGATGTAGCAATATAGCGGTAG
Found at i:44368 original size:17 final size:17
Alignment explanation
Indices: 44346--44379 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
44336 GATAAACGAT
44346 ACTTTTTATTTCACTAA
1 ACTTTTTATTTCACTAA
44363 ACTTTTTATTTCACTAA
1 ACTTTTTATTTCACTAA
44380 TAGGGCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (17 bp):
ACTTTTTATTTCACTAA
Left flanking sequence: Indices 43846 -- 44345
CTTCTACTTCTATACTTCTATCTCCCATCTACTTATTTATTTTATTTAGTTATTCACTAGAGCAA
TTATGTCTGGAAGTCGATCCAGGGCAAGTGTTCGGATCTATTATGACATATCCACGAGGCGCTCA
ACGGACCTTTTGAATCTTTTTTAATCTTATAAAGCCCTTTACAGGCTTAAAATTTGTCAAAAACC
ATTTTTTTTGGACAACCGAAGTCCCTAAATGAAGCTGCTACTTTAATAGCGTATATAAAAAATAT
TACTTTATTCCAAATCACGGGAGCGGTCATTAGTCATTACTAGGATAAGAGACATTCCTGCGAGG
GTCTTTTTATTAATTATTAATTTGAATAGAATAGTCGAAATAGTCGAATAGGATAAAAAATCAAT
TTTCTACCGTATCCCTGTATTGTTTATCCCTACGAAATACCAGACGAAATAGAACGATCTTAGAA
AGGATATAATGAAATTCTTTGGTTCTTTCTTACCAGATAAACGAT
Right flanking sequence: Indices 44380 -- 44879
TAGGGCTAACAATAACAAACAATTCATTTTTAATTATACCAAACAAAAATAGATACGGAAATTTC
CAAGAAATAAAATTCTAAATAAACAGCGAGTTTCTTATTCGAAACGCCCCGTGATCTTCAACCAA
TTCTGCGCTTGAATATAATTACCAGGAGTAAGCGCAATAGCTTGTTTCCAATACTCGGCGGCTTG
GTTGAACCAAGCCTCCGCAATTTCAGAATCTCCCTGACGAACGGCCTGTTCTCCCCGGTCGGAAT
AGGTGGGTCAATTCCTTTCCTTAGAACCGTACTTGAGAGTTTCCCGCCTCATACGGCTCGGCAAT
CAATTCTTTTGGTGTCCCGGGTTTTATAATTTAGTCTATCGAATTGAATTCGCTTTCTCATAGAT
TGATCTTTATTCTTTTTTTGCGGGTTAACCAAAAGAGGTTAATTCCATGAGCATGAGTTTAAAAC
TTGACTTTTGATTAAATTAATAATCCGCTTTGCTTTCATTTTATC
Found at i:45406 original size:12 final size:13
Alignment explanation
Indices: 45381--45405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45371 GTTCCCTCCC
45381 CCTTTTTTCTTTT
1 CCTTTTTTCTTTT
45394 CCTTTTTTCTTT
1 CCTTTTTTCTTT
45406 CTATAGTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
CCTTTTTTCTTTT
Left flanking sequence: Indices 44881 -- 45380
TTTCTCCTACCGTCAGAAGAATAACATAGAAGCATTTCCACTATAGTTAGAATTTTCTGAAAGGT
ATCTATCTCGGTTTCATATAAAAATTGATATAGAATCTTTGACAAAGACCTTTCTTCCTAAGAAA
GAAAAGACTTACTGTCTTTGGGATCTGATGCTACACCGCTGCTGAATACCTTAGGGGATCGACTT
TATTACATAAGTGGATTCCTTACTTTTATCTCATATCATGACATAAATAATAAATAAGCAGTTTT
TATTGGATCGGCATCGGCCCAAAACCTCACGAATTGGTCTTTACGGTGCTTCCTCTATCAATTAG
ATCCTTTATCCATAGAATAAACTATCTAGGTATATTGATTTCTTCATATTTCGACTTTTATGAAG
TTTCTTTCTTTGCTACAGCTGATAAAAATCGTTTTTTGCACGATGCATATGTAGAAAGCCTATTT
TTTTTTTCTAGTATTTATTAGTGTATTTGCTCTTTGTTCCCTCCC
Right flanking sequence: Indices 45406 -- 45905
CTATAGTCGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGA
ATGGATTTCGTTCGAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTACTTGTG
TGGATAAGGCCTATGTTATAAAGTATATAGCTTCGATCGTAGGGATCCATTTCGAGTCGCATAGC
TTCATAATAATTCTGTAAAGCTTCAGCATAATTGCCTTCAGATTGAGCTGACATTCGTTACGGTC
GTCATTCGATTCAAAGAATTCTCCGTTTCAGAACCGGACGTGAGATGAAAATCTCATACGGCTCC
TCCCTTATGTGCATAATGAGAATAATAATCCACAGAATCAAAAAAGATTGAAATATTCTCATCTC
ATTATGAACTGAGTGGGGCTAATGTTTTTACAAGAAATCTTTAGCCAACCTTCCTGCAAAAGCTT
TTTTTTATTCTTAATATCACGCGTGTTGGTACTGGTACTAGATAA
Found at i:48771 original size:14 final size:14
Alignment explanation
Indices: 48752--48780 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48742 TAAAATATAT
48752 TAAAATATATTTAG
1 TAAAATATATTTAG
48766 TAAAATATATTTAG
1 TAAAATATATTTAG
48780 T
1 T
48781 TATTGGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
TAAAATATATTTAG
Left flanking sequence: Indices 48252 -- 48751
AAAAATCAAACAACTAGAGAAAAGCCGGCTATCGGAATCGAACCGATGACCATCGCATTACAAAT
GCGATGCTCTAACCTCTGAGCTAAGCGGGCTTAAATAAGATAAATTTTACATGCGTAGGGATCCT
ACGATCTTATCTATTAACTTTCATTCTTAGCTATTCATAAAGAATAGACTAGAGAATAGAATTTC
AAATAAATGTTGAATACTATAGAACATAACCGTTAATAGAACAATTACTAGAACCCAGCGAGGAT
ATATATTATAGAATTTGGATTCATTTATCAATTCTATATTGATCGATAATAAATATCTGACTCTT
AATTAGATAATAAGATTTTGTTTTTCTTTTTTGAATTCAAATTCAAATGACATTCCATTTGAACT
TTTTTTCTAACCTAATTTTCTTAATCTATTCTATTTGATTATTCTATATTATAGAATATACATAA
TATTCTATTATTATTCTATATATATTTCGTTATTCTAAAATATAT
Right flanking sequence: Indices 48781 -- 49280
TATTGGAAATCGAATCGAATATTCGATTTTTATTATATCCATTTTCTAAATTCTACATTTGTTCT
ATTCTAATTTCAAATAATTGGGCTTTCGACTAAATAATTTGAATTATATTCGAATTCTAAATTAA
TAAAAAAAAAATAAGTAGTTATAGCTATTCTATTCTAAATGATTAATAGAAATGATTAATTAATA
TTTACTAAATTTCAATTTGAGTTTTTTTTGCTTATGTTCTTTCTTTTTGCTTATGTTCTATAGGA
TCCTCCTTAAGGAAAGGACAAGCAGAAAATGAAATTAACGGGAAAGATACAATCCATCTAAATGG
AATCCATATTCGAATAAGACATTTCTCCATTTTTCTTTCGTTGGAAAAGGGTCGGAAGAAAAGAC
GAAAAAAAAGAATCGACCGTTCGAGTATTCCACCCGATTGCATGAGAAAAATGAGAGTAAGAGAG
GCATATATATATTTTTTATGGTAGTATATATCCATCTAGATTGAA
Found at i:50618 original size:17 final size:17
Alignment explanation
Indices: 50596--50629 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50586 AAGAGTATAG
50596 ATCATGATACATACATA
1 ATCATGATACATACATA
50613 ATCATGATACATACATA
1 ATCATGATACATACATA
50630 CTTATTCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (17 bp):
ATCATGATACATACATA
Left flanking sequence: Indices 50096 -- 50595
CTCCTACCCTCTCCTTTTTTTGTTAGTGGTTGAAAATTCGGTAGGTTTTTCATCTAGCCTACCCT
ACTCTTTTCCATTTCAAAGGGGATCTGGGCATTCTTTTTTTCTCTTATTACATATCACAAGTCGT
GTGGTATATACGATAGGCGTAGAAATGAACACCTTTGAGCAAGGAATCCCCAGTTGAATAATTCC
CAAACCTTATTATTGCTCATACTGAAACTTACAAAGTATTTTTTTTGAAGATTCAAGAAAAGAAA
TTCTCCTCCCAAGACTTTTAATACTTTTTTCTTTTTTAATTGACATAGACCCAAGTCATCTAGTA
AGATGAGGATGGTGTGTCGGAAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGGACTGAAAATC
CTCGTGTCACCAGTTCAAATCTGGTTCCTGGCATATGATTAATATCTATGAGTATCTCTCACTAC
AAATTAAGTGATATGGCTCGACATACATATTCATTAAGAGTATAG
Right flanking sequence: Indices 50630 -- 51129
CTTATTCCTCTAGCTAGATGTCTGGGAATAGGCCTTTTTGTCTTTCTTTTTGTTTCTATTTCTTC
CTTACCCCCTATGTGACCCGCTAGAGCCCGTCGAAGTGGTGTACGCAATACAAAGTTCATGATGC
AGAACTCTTTTTTTAGTTCATCTTATTGGCTTGGCTCATCCGAAATAAGCATCTTTCAATTTTGA
GAATCTCCAAGAATTCCTAATTGTATTGTCTTTTTTTTCTGTTTAATTTATTTCTACCATTCACA
ATAATAAAACGAATCAGACTTCAATTCCTCTGTTTGATCTAGAAAAGAACGCACAAATATTTCTT
GAATATCGGATCAAAATGAAGAGTAATTTCTGAGAATTCAATACGCATCTTGTATTTCATAAAAA
TTGGGGGCAATATAATCCTTACGCAAGGGCCACCCTAGCCAACTTTCCGGCATTAAGATACGTTT
CAGCCGTGGATGATTATCATAAAAGAGTCCCAACATATCATAGGA
Found at i:58435 original size:18 final size:18
Alignment explanation
Indices: 58408--58442 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
58398 ACGTTTGGTT
* *
58408 TATTAGTTGAATTTCAAC
1 TATTAATTGAAATTCAAC
58426 TATTAATTGAAATTCAA
1 TATTAATTGAAATTCAA
58443 TTAAACTCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (18 bp):
TATTAATTGAAATTCAAC
Left flanking sequence: Indices 57908 -- 58407
CTTTACGTATGTCTGGTGGAGATCATATTCATGCTGGTACAGTAGTAGGTAAACTGGAAGGGGAA
AGGGACATAACTTTGGGATTTGTTGATTTACTACGCGATGATTTTGTTGAAAAAGATCGAAGCCG
CGGTATTTATTTCACTCAAGATTGGGTCTCTCTACCAGGTGTTCTGCCCGTGGCTTCCGGAGGTA
TTCACGTTTGGCATATGCCTGCTTTGACCGAGATCTTTGGAGATGATTCCGTACTCCAATTTGGT
GGCGGAACTTTAGGACACCCTTGGGGAAATGCACCCGGCGCCGTAGCTAATCGAGTAGCTCTAGA
AGCATGTGTACAAGCTCGTAATGAAGGACGCGATCTTGCTCGTGAAGGTAATGAAATTATCCGGG
AGGCTAGCAAATGGAGTCCTGAACTGGCTGCTGCTTGCGAAGTATGGAAGGAGATCAAATTTGAA
TTCCCAGCAATGGATACTTTGTAATCCAGTAATTTACGTTTGGTT
Right flanking sequence: Indices 58443 -- 58942
TTAAACTCGGCCCAATCTTTTACTAAAAGGATTGAGCCGAACCCAACGATTCTATTGTATATGTT
TTGGATAGCTACATATTTCTCTAGATATCCAAGATCTTAAATACAAAATCGAAGACCAAACACAA
CTCGTTCGATTATTGCGTTGGGTCCACAATTAATCCTAGAGGCTCTTAGGATCGGTGTATTCTTT
TCTATCCCGCAGTTTCGTCCCAAGTATCACAACTTCTTCGACCCATCCTGTATATTGTCCGTTTC
GTTCCGTGTTGGAATATAAAAAGATTCTATTAGTAGACGAGATTTTACGAAAAAGGTTCATTTAT
AGGAGAGAACAACTATTTCTTTTTTTCGATACGAATTTTACACAAGAGTCGAGCCGACGCTATTT
CGAATTGAAAAAGGTCGTAGATAGCGAAGTGATACCCTGGGGTCTCACAAAAAATAATGATTTTT
TCTTTGCAATTGACTATTCATCTATTGTATTTTCATGGAAATAGG
Found at i:61065 original size:25 final size:24
Alignment explanation
Indices: 61028--61076 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
61018 TAGTATACTT
61028 AGTATAATTATATACAATTATATA
1 AGTATAATTATATACAATTATATA
* *
61052 AGTATACTTAATATACATTTATATA
1 AGTATAATT-ATATACAATTATATA
61077 CGAATTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (24 bp):
AGTATAATTATATACAATTATATA
Left flanking sequence: Indices 60528 -- 61027
AAGAATAGATTTTTCTTTGGTGACATAAGATTTCTTTGTACAAGGAAGCGTGCAGATAATTCTTT
TTTTTTTACCGATATGACAGATTAGTAATCAGTAAACCTCTCTTAACAAAACAACATAAAAAAGC
ATTCTTCCTTAGAATTAATTAGTGGGCAGGGCAAATAAAACGAATTTCTTGTTCCCCTCTCGCGG
ATGTATATATCATTCAAATAGAGAAAATCGAAAATCTTGCATCTTTCTCTATCTCCTAACAAGGA
CCATTTTCCTAGGAATCCCTGCTGTTGGATCGGATTCGTTAGAATTCTTCGGAAATTTGTAAGAA
TTTCTTTTTGTATTACAAATTACAAAAAGAAATCCGAAGCTAAGAACAACAGAAGAAAAAAAATA
AGTAATAATAATAACGAAAATGGGTTATCATACATCTAGTTCATGTAGAAAGATGAATAGGTCCG
TTCGACATTCCTTGCGCTAAGTATATATACTTATTTAGTATACTT
Right flanking sequence: Indices 61077 -- 61576
CGAATTAGAATATGATAATAATTAGAATTAATATTCTAATTATTATAGGATATCTATATACCAGT
AACAGGTACAAATATTAAATCGAGGTACCCTTTCTATGACAATTCTAAACAGCTTTCCCTCTATT
TTAGTCCCTTTAGTGGGCCTAGTATTTCCGGCAATGGCAATGGCTTCGTTATTTCTTTATCTTGA
AAAAAATCAGATTTTTTAAATCCGATCGGATCAAGGTCAACTCTCATCTAGTTTTTTTTTTTCAA
GACTTAGCGATGACGGCTATCCATTTAGTAAAATAGTGTATAAGACGAAGAAGCGGCTTTCTCCG
AGCATAAACGAAAGTGCTCTTATGCATGTCTAATGTCTAAACATGATATTATAGGTAAATTAATT
CTATCTATTGTCAACAATAGGCTGTGATCTGAAATAGGCTGTGATCTGAACTCATGTCTGCAATG
AAAATCAATGTATCTATATGGATGGACCGGCCTATAGGGAATCAT
Found at i:61504 original size:17 final size:17
Alignment explanation
Indices: 61482--61516 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
61472 TATTGTCAAC
61482 AATAGGCTGTGATCTGA
1 AATAGGCTGTGATCTGA
61499 AATAGGCTGTGATCTGA
1 AATAGGCTGTGATCTGA
61516 A
1 A
61517 CTCATGTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (17 bp):
AATAGGCTGTGATCTGA
Left flanking sequence: Indices 60982 -- 61481
GTTCGACATTCCTTGCGCTAAGTATATATACTTATTTAGTATACTTAGTATAATTATATACAATT
ATATAAGTATACTTAATATACATTTATATACGAATTAGAATATGATAATAATTAGAATTAATATT
CTAATTATTATAGGATATCTATATACCAGTAACAGGTACAAATATTAAATCGAGGTACCCTTTCT
ATGACAATTCTAAACAGCTTTCCCTCTATTTTAGTCCCTTTAGTGGGCCTAGTATTTCCGGCAAT
GGCAATGGCTTCGTTATTTCTTTATCTTGAAAAAAATCAGATTTTTTAAATCCGATCGGATCAAG
GTCAACTCTCATCTAGTTTTTTTTTTTCAAGACTTAGCGATGACGGCTATCCATTTAGTAAAATA
GTGTATAAGACGAAGAAGCGGCTTTCTCCGAGCATAAACGAAAGTGCTCTTATGCATGTCTAATG
TCTAAACATGATATTATAGGTAAATTAATTCTATCTATTGTCAAC
Right flanking sequence: Indices 61517 -- 62016
CTCATGTCTGCAATGAAAATCAATGTATCTATATGGATGGACCGGCCTATAGGGAATCATATGAA
GGGGATGCTCGTATTTTATTAGATCTAACCAATTCAATGACTTACTGCTAAGAGTTCACATCAAA
ATAGTACTAGTTGATGAGAGTTACTTCAGAAACAAAAAAAGTAAACTAAAATTGATTTTCTTTTG
GTTATTTCCCCAATTCCAATAAAATGCAACTGGAGCTAGTATGTATGAGTTGGCGATCAGAATAT
ATATGGATAGAATTTATAGCGGGCTCTCGCAAAACAAGCAATGTCTGCTGGGCCCTTATCCTTTT
TTTAGGTTCATTAGGATTCTTAGTGGTTGGAATTTCTAGTTATCTTGATAGGAATTTGCTATCTT
TATTTCCGTCTCAGCAAATAAATTTTTTTCCACAAGGGATCGTGATGTCTTTCTACGGGATCGCG
GGTCTCTTTATTAGTTCCTATTTGTGGTGCACAATTACATGGAAT
Found at i:67029 original size:18 final size:18
Alignment explanation
Indices: 67002--67037 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
66992 ATTTCAATTA
67002 GATATAAAATCCACAAAT
1 GATATAAAATCCACAAAT
* *
67020 GATATGAAATCTACAAAT
1 GATATAAAATCCACAAAT
67038 ACCTTTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.25
Consensus pattern (18 bp):
GATATAAAATCCACAAAT
Left flanking sequence: Indices 66502 -- 67001
GTATCGAATACTGGTAATAATATCAGCAAAAGAACGTTCTCCTGTGCTTCCAGACATACCGAGCT
CCGCATATTCTTGTACAGTCAAAGGGCGATCAATTCTGTAAAAGATAAGATCAGTAAATAAAATT
CACTGAATTTTCAGAATTTTCATCTTTATATTTGTGGGATCGTCAATATAGTACCGAGGGTATTT
TTAGAATATACCGAATCAGTATAGCTATCCTTCTTCTGACACAGCAACGCAATTTCAACCGGTAT
CGAAATGCAGTGCTAGAAAATTGATTTCTTCTTTTCTTCTTGCTGGTCCGATGTATAACTATGTA
CTATTCGTACTATTCAATATAAAATTACGCAAATTTCTGTAGTATGGGGTTTCTTTTGTCTCCAT
TTCCATTATTGTCTTCGGACTCGAAATTCAAAATGAAGTAAAATGGGAATCCTACAGATTGTTTT
ATAATAATTCATGATAAAGATTATCATATTTACCCATTTCAATTA
Right flanking sequence: Indices 67038 -- 67537
ACCTTTTTTGTAGATGTAGAATTTTTTGTTGTAATTCTCCTCTTTTTTTTCAAGGAATTGGTTAG
TTGTCCAGAAACAAGTAACGGTGGGAGATAGGATTCGATAAAACTAAAAAATAAACGAACGAGAA
AACTGCCTAAAATTAGTCTAATAATAATAATCTATATTTGGGATGCCCACGTTGTTGTATTAGAT
CCAAAGGTTCTTTCTTGACCTAACTACAACGTGCGGGCTTTATCCTTTATATATAATATGGAAAG
GCAAAATGCAAAATCTATAAAGGAAAGGTGAAGAGGGATTTTTAGTTTTAGAATCGAATTGAACC
AAAATAAAAATGGGATTCTTGAGTGATCGGATTGTGCGATACCTTTTGTCTTCTCATTTGAGATA
TTATGTCAATGAACCCACCGCTGGAACTACTGAGAGAAAAAGAAAAGTAAATAAAACAAATTAAA
AGTATTAAAATAAAGAAAAAGTATTCTAAAAAGTATTATAAGGTC
Found at i:70201 original size:21 final size:21
Alignment explanation
Indices: 70161--70199 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70151 AAATTATGGA
70161 TAAAACCAAGCGACTCTTTCT
1 TAAAACCAAGCGACTCTTTCT
*
70182 TAAATCCAAGCGA-TCTTT
1 TAAAACCAAGCGACTCTTT
70200 TCGTAGGCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (21 bp):
TAAAACCAAGCGACTCTTTCT
Left flanking sequence: Indices 69661 -- 70160
CTTTTATTTTTTTGTCCCTTGTTTCTTATTCGGTTCAGGTCGGAAAATAGAAAAGTTGGGTGAAT
CCAAAACCCAAAGCAAAGGAGGGCCATGGCCAAGGGTAAAGATGTCCGAGCAAGGGTTATTTTGG
AATGTACTCGTTGTGTTCGAAAGGGTGTTAATAAGGAATCAAGGGCAAGGGGTATTTCCAGATAT
ATTACTCAAAAGAATCGACACAATACACCTAGTCGATTGGAATTGAGAAAATTCTGTCTCTATTG
TTACAAACATACACTTCATGGGGAGATAAAAAAATAGCTAGAGTCGAACTGCGTGGTTGTGTGTC
ACTCTTGCAAATAAGATGAAAAAATAATCTAGATATATATCTATATTATTTCATATATTGAAATA
AAAACAAATAAATAAATATATACAAACCAAATCCTCTAATTGATTCTATAACGCAATTTTTTATT
TCATCAAAATAGGATTTTAGAGATAAGGAATAAACAAATTATGGA
Right flanking sequence: Indices 70200 -- 70699
TCGTAGGCGTTTGCCCCCGATTGTATCGGGGGATCGAATTGATTATAGAAACATGACTTTAATTA
GTCGATTTCTTAGTGAACAAGGAAAAATATTATCTAGGCGGGTGAATAGATTGACCTTAAAAGAA
CAACGATTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTCGTTACCTTTTCTTAATAA
TGACAAACAATTTGAAAGAAGTGGGTCGACCACTAGAACTCCAGGTCTTCGAAACAGAAAAAAAT
AGGGTTACTCTTCACTTAAATCCAAATTCCAATCGGAACTCAAACCCAGATGGACGTTTTGTTGA
AAAAATCCGAGAAGTAGTCGTGTCGTAAGAAAAAAAATTGGGGAAGAAGAATAAAAACAATCTTT
TTATATTTAGCGTGTTCGCTCATTTTGACGATTTTATCATATTATTTCTACTCTATCTTCCTGGA
GTTCATTCTCCAGAGAACTTCGTTTAAAAATTATAATGGACTCCT
Found at i:72749 original size:18 final size:18
Alignment explanation
Indices: 72728--72766 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
72718 AATACCCCTC
72728 CTTTCTCTCATACTACTG
1 CTTTCTCTCATACTACTG
72746 CTTTCTCTCATACTACTG
1 CTTTCTCTCATACTACTG
72764 CTT
1 CTT
72767 CGCTACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.05, T:0.46
Consensus pattern (18 bp):
CTTTCTCTCATACTACTG
Left flanking sequence: Indices 72228 -- 72727
GTAGTTCTTCCGTATCCAGGACAAATTCTCCCGTTTGTGCCCCATAAAAAGCGCCAAAGGGTTGA
TGGATCATGACCCTGATGATATATTATAACCTAAAAAAAGGTTCCTCTATCTCGCACGATTAGCC
GAGTGGAGGAGATAAAGAAAAAGATAGAATTGAACAACCGTACGGGCATTTTTTTCGCATTGCAT
ACGGCTCGCCAATGGAATTTGCTTTTTACCTTTCATCAAACAAGGAGAATTTTCGGGATTCTATT
ATACCCAGATCGGTAAATGATCCAATTACCACCCTTCTTTTTTTTTTTTTGGAGTTCAAAATACT
ATGATGGCTCCGTTGCTTTATATATTTATTTTGTTTGTGATTCAGCAATCCCAAAGTGTCTTTTT
TTTTCGTACTCTTTCATGCCATAAATATTATTAATAGCCTTCCGTCGTGAAAAAAGTTTGTGACG
CTACAATAGGCCTACAATAGATAAGATAAACTCGGAATACCCCTC
Right flanking sequence: Indices 72767 -- 73266
CGCTACATAATCGAATATTTTGAAAAAAAAAACACTAACAAGTTTCATATCGAATTCGAAGTGCC
GTGCTATTATTACTTAATCTGAAAAATTCATATGGCGAAGGCATAATCTTCTTTTTTCTTTCAAA
TAAAAAACTCATTGGCGCCAAGCGTGAGGGAATGCTAGACGTTTGGTACTTGCTCCTGCGGCCAG
GAGAAAAGACCCCATGGAGGCGGCCAATCCCATGCATATTGTCTGTACATCTGGTCGCACAAATT
GCATAGTATCATAAATTGCTATTCCGGGTATTACCCATCCGCCAGGAGAGTTGATAAATAAATAC
AAATCCTTGGTCTCGTTCTCTATACTGAGATATACCATAATACCAATAAGTTGATTCGAGATATC
ACTCTCAACCATTTGACCTAAAAAAAGCAATCTTTCTCGATAAAGTCGGTTGATTAGGATAAAAC
TGTATCCCTTAGGAGCCGTACAGGCATCTTTTGATGCGCACGGTT
Found at i:72775 original size:18 final size:18
Alignment explanation
Indices: 72728--72775 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
72718 AATACCCCTC
*
72728 CTTTCTCTCATACTACTG
1 CTTTCGCTCATACTACTG
*
72746 CTTTCTCTCATACTACTG
1 CTTTCGCTCATACTACTG
72764 C-TTCGCTACATA
1 CTTTCGCT-CATA
72776 ATCGAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 5 0.18
18 23 0.82
ACGTcount: A:0.19, C:0.33, G:0.06, T:0.42
Consensus pattern (18 bp):
CTTTCGCTCATACTACTG
Left flanking sequence: Indices 72228 -- 72727
GTAGTTCTTCCGTATCCAGGACAAATTCTCCCGTTTGTGCCCCATAAAAAGCGCCAAAGGGTTGA
TGGATCATGACCCTGATGATATATTATAACCTAAAAAAAGGTTCCTCTATCTCGCACGATTAGCC
GAGTGGAGGAGATAAAGAAAAAGATAGAATTGAACAACCGTACGGGCATTTTTTTCGCATTGCAT
ACGGCTCGCCAATGGAATTTGCTTTTTACCTTTCATCAAACAAGGAGAATTTTCGGGATTCTATT
ATACCCAGATCGGTAAATGATCCAATTACCACCCTTCTTTTTTTTTTTTTGGAGTTCAAAATACT
ATGATGGCTCCGTTGCTTTATATATTTATTTTGTTTGTGATTCAGCAATCCCAAAGTGTCTTTTT
TTTTCGTACTCTTTCATGCCATAAATATTATTAATAGCCTTCCGTCGTGAAAAAAGTTTGTGACG
CTACAATAGGCCTACAATAGATAAGATAAACTCGGAATACCCCTC
Right flanking sequence: Indices 72776 -- 73275
ATCGAATATTTTGAAAAAAAAAACACTAACAAGTTTCATATCGAATTCGAAGTGCCGTGCTATTA
TTACTTAATCTGAAAAATTCATATGGCGAAGGCATAATCTTCTTTTTTCTTTCAAATAAAAAACT
CATTGGCGCCAAGCGTGAGGGAATGCTAGACGTTTGGTACTTGCTCCTGCGGCCAGGAGAAAAGA
CCCCATGGAGGCGGCCAATCCCATGCATATTGTCTGTACATCTGGTCGCACAAATTGCATAGTAT
CATAAATTGCTATTCCGGGTATTACCCATCCGCCAGGAGAGTTGATAAATAAATACAAATCCTTG
GTCTCGTTCTCTATACTGAGATATACCATAATACCAATAAGTTGATTCGAGATATCACTCTCAAC
CATTTGACCTAAAAAAAGCAATCTTTCTCGATAAAGTCGGTTGATTAGGATAAAACTGTATCCCT
TAGGAGCCGTACAGGCATCTTTTGATGCGCACGGTTCGACAAAAC
Found at i:74445 original size:10 final size:10
Alignment explanation
Indices: 74430--74472 Score: 77
Period size: 10 Copynumber: 4.2 Consensus size: 10
74420 GAACTCTTCC
74430 ATTATTACTA
1 ATTATTACTA
74440 ATTATTACTA
1 ATTATTACTA
74450 CATTATTACTA
1 -ATTATTACTA
74461 ATTATTACTA
1 ATTATTACTA
74471 AT
1 AT
74473 AGAATAGAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 22 0.69
11 10 0.31
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTATTACTA
Left flanking sequence: Indices 73930 -- 74429
CCTCCTCACGAAATAGATCTAATTTACTTCATTGCATTTCACGCTACAAATTTTTGCAAATTCAA
TCAAATTTTTTTGGCAAAACAGAGGATATCTCGATCGGGGGAGAGAATGGGGAAATCCCATATGA
CCCAATAGATCTGACAAGTCGCACTATATGTCAACCCAAGATGGATGCTTGTCCCCGGGACTTCG
ATAAGGTACTTTTGGAACACCAATAGGCATAAAAGAAAAAAAGAATTAAGTACTCTAGTTCACTT
TGATGTGGAAGCGTAATAATGAGCTTCTTGTCTTAATAATATTGGCCGTTATCTTAGTTTATACA
GCGATTGACTAAGTTCATAAAATAAAGGACAATTCTTATGAATAGGTCTTGTGAATGATGGCCGA
ATATGGACGCATGTGCTCATAGAAAAGAGAATCGGCCCCCATTGCGTATTGGTGCTTATCGAGTA
TAGAATAGATCTGCTTCTCTTTTTTCCTACGAACCGAACTCTTCC
Right flanking sequence: Indices 74473 -- 74972
AGAATAGAACAAATATTAATATTAATACTTTTTTCGAGATAATCCCCTGAAAAAAGAAGGGATAG
CATAGTTTTTTTTTTCAATGCAATAAAGTTACATAGTGTCTATTTTTTATTAATAAAGGGGTAGT
CCCATGGGTTTGCCTTGGTATCGTGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTTC
TGTCCATATAATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATGAATTAG
CTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGACAAGGCATGTTCGTTATACCC
TTCATGACTCGTTTAGGAATAACCGATTCATGGGGCGGTTGGAGTATTACAGGGGGGACGGTAAC
GAATCCGGGTATTTGGAGCTACGAAGGTGTAGCCGGGGCACATATTGTATTTTCGGGCTTGTGCT
TCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAATAT
Found at i:74455 original size:21 final size:21
Alignment explanation
Indices: 74429--74470 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
74419 CGAACTCTTC
74429 CATTATTACTAATTATTACTA
1 CATTATTACTAATTATTACTA
74450 CATTATTACTAATTATTACTA
1 CATTATTACTAATTATTACTA
74471 ATAGAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (21 bp):
CATTATTACTAATTATTACTA
Left flanking sequence: Indices 73929 -- 74428
ACCTCCTCACGAAATAGATCTAATTTACTTCATTGCATTTCACGCTACAAATTTTTGCAAATTCA
ATCAAATTTTTTTGGCAAAACAGAGGATATCTCGATCGGGGGAGAGAATGGGGAAATCCCATATG
ACCCAATAGATCTGACAAGTCGCACTATATGTCAACCCAAGATGGATGCTTGTCCCCGGGACTTC
GATAAGGTACTTTTGGAACACCAATAGGCATAAAAGAAAAAAAGAATTAAGTACTCTAGTTCACT
TTGATGTGGAAGCGTAATAATGAGCTTCTTGTCTTAATAATATTGGCCGTTATCTTAGTTTATAC
AGCGATTGACTAAGTTCATAAAATAAAGGACAATTCTTATGAATAGGTCTTGTGAATGATGGCCG
AATATGGACGCATGTGCTCATAGAAAAGAGAATCGGCCCCCATTGCGTATTGGTGCTTATCGAGT
ATAGAATAGATCTGCTTCTCTTTTTTCCTACGAACCGAACTCTTC
Right flanking sequence: Indices 74471 -- 74970
ATAGAATAGAACAAATATTAATATTAATACTTTTTTCGAGATAATCCCCTGAAAAAAGAAGGGAT
AGCATAGTTTTTTTTTTCAATGCAATAAAGTTACATAGTGTCTATTTTTTATTAATAAAGGGGTA
GTCCCATGGGTTTGCCTTGGTATCGTGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATT
TCTGTCCATATAATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATGAATT
AGCTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGACAAGGCATGTTCGTTATAC
CCTTCATGACTCGTTTAGGAATAACCGATTCATGGGGCGGTTGGAGTATTACAGGGGGGACGGTA
ACGAATCCGGGTATTTGGAGCTACGAAGGTGTAGCCGGGGCACATATTGTATTTTCGGGCTTGTG
CTTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAAT
Found at i:83225 original size:18 final size:18
Alignment explanation
Indices: 83202--83237 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
83192 TTTGAATCGG
83202 TTTTTTAATGTTTAATTT
1 TTTTTTAATGTTTAATTT
83220 TTTTTTAATGTTTAATTT
1 TTTTTTAATGTTTAATTT
83238 AAAGTAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (18 bp):
TTTTTTAATGTTTAATTT
Left flanking sequence: Indices 82702 -- 83201
ACGTGTTCTTTTTTTTTTTATGAAAATTATTAAAAGTATATGCGTGAGACATACTCTACTAAATT
TGTATTTATCTATTGTATTTTAATACTATGGATATAGTGCGGTCTCATCTTATAATACTTCAGGC
GCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCTCGGGCGATCGCACCAAAAACTCG
AGTTCCCCTTGGATTTCCTTCATGATCAATGACAACTGCAGCATTGTCATCATAACGTATTATCA
TACCGTTATCGCGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCGGCTCTT
TCTAGAGGCATATTTGGTACTGCTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATA
TCTACGATTACTGGCTCCTATGATTCGAATACACATCAATTCTTGGGCACCGCTATTGTCCGCTA
CATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAATCGG
Right flanking sequence: Indices 83238 -- 83737
AAAGTAAAGCACTGAAAGGTCGAAGTAAAAAAAAAAGGTCGAAGTAAAAAAAAAAAAAAATAAAC
CCGCATTTTTTTATACCCAAGATTTTTTTTCTTTGGTTCTACATTTCCTATACAGAAATAATGAA
TTGAGTTCTTATAGGCATTTTGGACGTCGCTATTGAAATAGCCTTTCGTGCGATATTTTCAGCGA
CCCCGCTCATTTCATAAAGTATTCTACCCGGTTTAACAACGGCTACCCAATATTCGGGGGATCCT
TTCCCGGACCCCATACGTGTTTCTGTGGGTCTTACTGTAACAGATTTGTCTGGAAATACACGTAC
CCATATTTTTCCATCACGCCGTACATTTCGTGTCATTGCTCGTCGCCCTGCTTCGATTTGTCTAG
ATGTGATCCAAGCGGGTTCAAGTGCTTGAAGAGCATATCTGCCGAAACAAATATGATTACCTCGA
TAAGATATTCCTTTCATTCTTCCTCTATGTTGTTTACGGAATCTT
Found at i:83293 original size:20 final size:19
Alignment explanation
Indices: 83252--83292 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
83242 TAAAGCACTG
83252 AAAGGTCGAAGTAAAAAAA
1 AAAGGTCGAAGTAAAAAAA
83271 AAAGGTCGAAGTAAAAAAA
1 AAAGGTCGAAGTAAAAAAA
83290 AAA
1 AAA
83293 AAAAATAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.66, C:0.05, G:0.20, T:0.10
Consensus pattern (19 bp):
AAAGGTCGAAGTAAAAAAA
Left flanking sequence: Indices 82752 -- 83251
ATACTCTACTAAATTTGTATTTATCTATTGTATTTTAATACTATGGATATAGTGCGGTCTCATCT
TATAATACTTCAGGCGCTAATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCTCGGGCGAT
CGCACCAAAAACTCGAGTTCCCCTTGGATTTCCTTCATGATCAATGACAACTGCAGCATTGTCAT
CATAACGTATTATCATACCGTTATCGCGTCTGAGTTCTTTACAAGTACGTACAATTACAGCTCTG
ATCACTTCGGCTCTTTCTAGAGGCATATTTGGTACTGCTTCCTTGATCACAGCAACAATAACGTC
ACCAATATGAGCATATCTACGATTACTGGCTCCTATGATTCGAATACACATCAATTCTTGGGCAC
CGCTATTGTCCGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAATCGGTTTTT
TAATGTTTAATTTTTTTTTAATGTTTAATTTAAAGTAAAGCACTG
Right flanking sequence: Indices 83293 -- 83792
AAAAATAAACCCGCATTTTTTTATACCCAAGATTTTTTTTCTTTGGTTCTACATTTCCTATACAG
AAATAATGAATTGAGTTCTTATAGGCATTTTGGACGTCGCTATTGAAATAGCCTTTCGTGCGATA
TTTTCAGCGACCCCGCTCATTTCATAAAGTATTCTACCCGGTTTAACAACGGCTACCCAATATTC
GGGGGATCCTTTCCCGGACCCCATACGTGTTTCTGTGGGTCTTACTGTAACAGATTTGTCTGGAA
ATACACGTACCCATATTTTTCCATCACGCCGTACATTTCGTGTCATTGCTCGTCGCCCTGCTTCG
ATTTGTCTAGATGTGATCCAAGCGGGTTCAAGTGCTTGAAGAGCATATCTGCCGAAACAAATATG
ATTACCTCGATAAGATATTCCTTTCATTCTTCCTCTATGTTGTTTACGGAATCTTGTTCTTTTGG
GGTTATAATTGATGGTTCTTTCTCAATTCCATCTCTACTACAGAA
Found at i:91171 original size:24 final size:24
Alignment explanation
Indices: 91143--91217 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 24
91133 ACAAAAAAGA
91143 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCTAAGTCACTTCCTTTCTT
* * *
91167 TTTGTCCAAGT---TGCTTTTCTT
1 TTTGTCTAAGTCACTTCCTTTCTT
* *
91188 TTTGTCTAACTCACTTCCTTTTTT
1 TTTGTCTAAGTCACTTCCTTTCTT
91212 CTTTGT
1 -TTTGT
91218 GAGTTTCGGG
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
21 17 0.44
24 17 0.44
25 5 0.13
ACGTcount: A:0.11, C:0.23, G:0.09, T:0.57
Consensus pattern (24 bp):
TTTGTCTAAGTCACTTCCTTTCTT
Left flanking sequence: Indices 90643 -- 91142
GATTTGGAAGATCCAAAACCAAAAATAGTGGCATTTGCTAACAACAACATAATGGAGGCAGTCAA
TCAATCTAGATTGATCCAAAATCGGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATG
TATTGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCGCAGGGAT
CAAATAGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATC
GAATTTGAAAAAGAGTCAGAAGAAATGGTTCGCTCCTCTTATTTTTATTTCTCGAACCGAGAGAT
TCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGGATTTCCAGGAG
CATTTGAAACATTTCGTTTCTGAGCAGAAGAGCCGTTTTCAAGTAGTGTTCGATCGATTACGTAT
TAATCAATATTTGATTGATTGGTCTGAAGTTATCGACAAAAAAGA
Right flanking sequence: Indices 91218 -- 91717
GAGTTTCGGGAATATCCCCATTCATAGGTCTGAGATCCACATCTATGAATTGAAAGGTCCGAATG
ATCAACTCTGCAATCGGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATGGAAA
CCCTTCTTATTGGATGATCATAATACTTCTCAAACCCAAAAATCAAAATTCTTGATCAATGGAGG
AAGAATATCACCATTTTTGTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGAA
ATAATCGCAGGAAATCTTTTGATAACAATAACACGAATTCCTATTTCTCAACGATATCCCACGAT
CAAGACAATTGGCTGAATCCTGCGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAA
AGCAAATCGACTTCGATTCTTGAATAATCCACATCGCTTCCGCTTCTATTGTAACAAAAGATTCA
CTTTTTATGTGGAAAAGGTCCGTATCAATAATTATGATTTTACGT
Found at i:93624 original size:18 final size:18
Alignment explanation
Indices: 93598--93690 Score: 177
Period size: 18 Copynumber: 5.2 Consensus size: 18
93588 TGATATCGAC
*
93598 GATGATAGTGACGATATT
1 GATGCTAGTGACGATATT
93616 GATGCTAGTGACGATATT
1 GATGCTAGTGACGATATT
93634 GATGCTAGTGACGATATT
1 GATGCTAGTGACGATATT
93652 GATGCTAGTGACGATATT
1 GATGCTAGTGACGATATT
93670 GATGCTAGTGACGATATT
1 GATGCTAGTGACGATATT
93688 GAT
1 GAT
93691 CGTGACCTTG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
18 74 1.00
ACGTcount: A:0.29, C:0.10, G:0.28, T:0.33
Consensus pattern (18 bp):
GATGCTAGTGACGATATT
Left flanking sequence: Indices 93098 -- 93597
CGATTGATGATAAAGAAAGAGAATTCTTGGTTCATTTCTCCACCTTAACGACAGAAAAAAGGATT
GATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAAT
GATTGAACAACCGGGAACAATTTACTTACGATACTTAGTTGACATTCATAAAAAGCATTTCATGA
ATTATGAGTTCAATACATACTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGACAATC
ACTTATTCACAAACTTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTTTTC
GCTCCGCCTAGCCCTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACCGGACGCT
CCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACAGTATTTCTGAACAAG
TTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCGAC
Right flanking sequence: Indices 93691 -- 94190
CGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCTAACTATCGATATGATGTC
GGAAATAGGCCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAA
TATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTA
GTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGAC
TCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCCCCGAATAAATTAAATACATGCATTAAGA
TACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTT
CACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGCACG
AGATCTTGTAGCACTTACCAATGAGGCCCTATTGATTAGTATTAC
Found at i:101643 original size:12 final size:12
Alignment explanation
Indices: 101626--101650 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
101616 TTTTCTTCTG
101626 TATCTATATGAA
1 TATCTATATGAA
101638 TATCTATATGAA
1 TATCTATATGAA
101650 T
1 T
101651 CGATATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TATCTATATGAA
Left flanking sequence: Indices 101126 -- 101625
GAATCTCCTCCCTTCTTCCACTCCGTCCCCAAGAGTAACTAGGACCAATTCAGTCACGTTTTCAT
GTTCCAATTGAACACTTTCCATTTTTGATTATTCTCAAAGGAGAAGATTATTCTTTTTACCAAAC
ATCTGCGGACCCAATCACACGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCCCTTTG
CCCCTCATTCTTCGAGAATCAGAAAGATCCTTTTCAAGTTTGAAGTTGTTCATTTGGAATCTGGG
TTCTTCTACTTCATTTTTATTTACTTATTTCTTTTTTTTTTTATTTTATTCCCTTCCATCATTCC
TTAAGTCCCATAGGTTTGATCCTATAGAATCTGATCCATTTTCTCATTGAGCGAAGGGTACAAAA
TGGATCGGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTCTTTCTCTA
TCCCATAGGTACAGCATTTGAATCAATAGAGAACTTTTTCTTCTG
Right flanking sequence: Indices 101651 -- 102150
CGATATTATTCCATTCCAATTCCTTCCCGATACCTCCCAAGGAAAATCCCGAATTGGATCCCAAA
TTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATGGGAATCCTTTTTCTGA
AAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGACGACCTGTGTTGTGTTAAT
GTTAAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGTGGA
AAGTATACATAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTATTTTCTATTCTATTA
GTATTAGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAACTGTTG
GCACCAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTGT
ACCATGAGAGAAGCAAGGAGGTTAACCTCTTTCAAATATACAACA
Found at i:101966 original size:18 final size:18
Alignment explanation
Indices: 101943--101980 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
101933 AAGACAGTTC
101943 TTTTCTATTCTATTAGTA
1 TTTTCTATTCTATTAGTA
101961 TTTTCTATTCTATTAGTA
1 TTTTCTATTCTATTAGTA
101979 TT
1 TT
101981 AGATTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTTCTATTCTATTAGTA
Left flanking sequence: Indices 101443 -- 101942
ATCATTCCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGATCCATTTTCTCATTGAGCGAAGG
GTACAAAATGGATCGGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTC
TTTCTCTATCCCATAGGTACAGCATTTGAATCAATAGAGAACTTTTTCTTCTGTATCTATATGAA
TATCTATATGAATCGATATTATTCCATTCCAATTCCTTCCCGATACCTCCCAAGGAAAATCCCGA
ATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATGGGA
ATCCTTTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGACGACCT
GTGTTGTGTTAATGTTAAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCCCGCGGTAGCA
ACGGAACCGTGGAAAGTATACATAAGTATACAGAAAAGACAGTTC
Right flanking sequence: Indices 101981 -- 102480
AGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATTAACTGTTGGCACC
AGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTGTACCAT
GAGAGAAGCAAGGAGGTTAACCTCTTTCAAATATACAACATGTATTCTGGCAATGCAATGTAGTA
GGGCTTTCATCTTGATCCGAATGAATCATCTTTTCCACGGAGGCAAATCTTTGCCTGCTAGGCAA
GAGGATAGCAAGTTCAAAATTCTGTTTCGGTAGGACATGTATTTCTATTACTATGAAATTCATAA
ATGAAGTAGTTAATCGTTTTGTCAATTTTTCGGGGGCTTAAAGGAGCGCGGAAAGATATAAGAAC
TCTTGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGC
AAGAAGGAGGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTT
Found at i:112784 original size:16 final size:16
Alignment explanation
Indices: 112765--112797 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
112755 ATTTTCTATA
112765 AAGATTAAGAAAAAAG
1 AAGATTAAGAAAAAAG
112781 AAGATTAAGAAAAAAG
1 AAGATTAAGAAAAAAG
112797 A
1 A
112798 TAAAGATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (16 bp):
AAGATTAAGAAAAAAG
Left flanking sequence: Indices 112265 -- 112764
TGGATACAGCAAAAGAATTCTAGTAGATCTAATGTACTTATTCGATTTAATAAGTACCTTGTGTC
AGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTATCTACTATT
TAGGAAGAATACCCTCACCCATTTTTACTAAGAAACTGAAAGTGAAAGAAACCTCAGAAACGGAA
GAAAGAGATGTAGAAATAGAAACAACTTTCGAAAGGAGGGGTCCTAAACAGGAACAAGAGGTATC
CGCCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATACGGACAAAATCGAGG
AAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAAAAAAAACAAAGCATGAATTCCACTTTCGC
TTTAAAGAGACATGCGATAAAAATAGCCCAGTTTCTGAAAGTTCTTATCTGGATGGGAATCAAGA
AAATTCAAAATTAAAAATCTTTCAGAAAGAAGAGAATTTTCTATA
Right flanking sequence: Indices 112798 -- 113297
TAAAGATTAAGACTGAAAATAAATATAATAGGAGATAAAAAGAGATACGACCTACCCCTAAATAT
TTTATACCTTCCCCTACAAAAAAACTTGTAATACCGACCCCATTCGTAATTCCATCAATTACTCG
TCTGTCGAACAAATGCGTTAGTTTTGCTAATCCTCTTATCCCTTCCGTTAAGGATCTTGTGTAAA
AGGCATCGATATAAGCACGATTATATGACCAATCATATAGGAAATTGAGTATTTTGTCCCAAAGA
ATTCTCTTAGGTCCTCTTTTAGAAAATAAGTTTAATAGGTTCCAATTGTATAAGGATGAATAAAA
AGGCTTATATAAAAAATAGGCTATAAGGATTCCGAAATACGTTATACTGATGGAAAGGGTTGGAT
TTTTCAAAACTTCATACCAATCAACAAAATGAGTTGAGTTTTGATGTAAAAGATTTATAGACGGA
GTTAACAATTTTGATAAAATATCCGAATCGATTCCTTCTTGAGTC
Found at i:115904 original size:13 final size:13
Alignment explanation
Indices: 115886--115913 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
115876 CCCCAAAATG
115886 ATTTATTTTAACA
1 ATTTATTTTAACA
115899 ATTTATTTTAACA
1 ATTTATTTTAACA
115912 AT
1 AT
115914 AGATGTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTATTTTAACA
Left flanking sequence: Indices 115386 -- 115885
GGTATTTTTAATTTGTTTATTTTTTTGTTTATTCAGAATCATTAACTAGTTCATCTCGGAACGTA
TTGATTGTCTTGCATTACAATAAATGGCATTAAATAACCAATTACTAAAAAAAAGATTAGGACGA
TAAAACCTGTTCAATGTATTTTTCATGTATAAATATAGCATGCCAAAAATAAACAAAGATAAACG
CGGAAGGGCTTTTTTCTTTTTTTTATCAACTTCAACCAATTCGATTTCGATTATATGGCACAATC
CGCCCTATAGATATCGATTTGAATAGGTATATAAGGATACCGACAATAACTACGAAATACAAATT
TGTTTTTCCCCGATATTTCTGGAATAAAAATTGAAAAAATCCCTTATTCTGTTGTTTTTTTTGAG
TAAGATTTTATGCCATTTTTGCGTATTTCTATTTATTTATTTTTTCTCTAAACTAACTACCTTTA
TAAAAAATACACGGATAATGAAATAAATAGTAAAACCCCAAAATG
Right flanking sequence: Indices 115914 -- 116413
AGATGTCTTTCACATCCAATTTCAGCAATGAATAATCTTTTCTTTTTTGAATGGCAGTTCCAAAA
AAACGTACTTCTATATTAAAAAACCATATTCGTAAGAATATTTGGAAAAAGGGAGGGTATTGGTC
AACATCGAAGGCTTTTTCCTTAGCGAAATCCCTTTCTATTGGGAATTCGCAAAGTTTTTTTGTAA
AACAAATAAATAAGAAAACGTTGGAATAATCTGAATACGCCTGACTCAAAAATAAAAAATGAGTT
AATTGTGTTTAGACTTTATACTATAGAAAAGTCGAAAAAAGTAAGAAACCAGTCCCCTTTCGTAA
TGTTTTGAACCAATTGATTTGTCTACTGAATTTGAAAACTAAAATAAAAAAAAAAAGTACGTTTT
TTTTATTTCAAAACGGAATTAAGACAAACTCGAAAGTTTCACCTTTCTTTTTATTTGAATATTTT
TTGTCTTCCCAGGATGGGGATTCTTATTTTCCCCATCACCCCACC
Found at i:124366 original size:13 final size:13
Alignment explanation
Indices: 124348--124373 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124338 TCAAATTTCT
124348 TTTATTAACCTAA
1 TTTATTAACCTAA
124361 TTTATTAACCTAA
1 TTTATTAACCTAA
124374 AGAATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTATTAACCTAA
Left flanking sequence: Indices 123848 -- 124347
GGAGCTTAAAAAAAGGGTAAAGGATTATTTCGTTCCTGATAGTTATTTTTTTAACTAGCGGATAG
GAGCATACTCTGGATCGGAATTGTGGGGAGTACTACCTGATCATTTCTACCAATTTAAAGCCCCA
ATTAGTGTTCTTTTTATGTTATGCGGAAGTATACTTTTTGATAATTGACATAATCATAATCTACA
TTACTAACCCGTTGTGTGTTTTTTGGTGTTCCTTCCTATCCACCCATTTTTTTTTCAACACCCGT
AATATATATGCATTATAATATATACAAACGCTAATGAAAATTCCATAGGGTTGGTCTTTTGAACC
CGCTTCAAGCTAGGATGATCAATCAACTAATCTTGGGGTAAGGGTAAGGGCTTCCTACACTTTTA
CTTTTGGTTACTTACCCTTAACGCTTGTACATAGGAAATGAGACTTAAGCCACTTGTACTGCGAA
TTGCAAAGTTGTTTTCTTTCACTCATATATAACTATCAAATTTCT
Right flanking sequence: Indices 124374 -- 124873
AGAATAAATAAATGAATAAAAAACCGAAGATTTAGATTTTTCTATTGAAGTTCTTTTTTTTTTCT
AGAAACAAAAGAAAAACAATAGGAAAATGAAAAGTTTAGATTTTAGCGAATCGCACGTAGAGATA
TTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGATTGAGCAGCAGCTCGCAGACCG
CCTAAAAAGGAATATTTATTATTTGATCCATATCCTGACATAATAAGTCCAATAGGGGCAATACT
TGAAATGGCAATCCATAAAAAAATACCGATATTAAGGTCAGCTAAAACAAGGTTATAACTAAAAG
GAATTACTGAAGAACTTAGTAGAATTACTATGACTGCTATAGATGGTCCAATACTGAATAAACTA
CTATTTCCTCTAGATGGAAGAAGGTTTTCTTTGAAAAGCAGTTTTGTCCCATCTGCTAAAGCTTG
AAGAATTCCCAAGGGACTGGCGTATTCAGGCCCAATACGTTGTTG
Found at i:126664 original size:12 final size:12
Alignment explanation
Indices: 126647--126671 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
126637 TTTACTGATC
126647 AGTAATAATAAG
1 AGTAATAATAAG
126659 AGTAATAATAAG
1 AGTAATAATAAG
126671 A
1 A
126672 CTAGTTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (12 bp):
AGTAATAATAAG
Left flanking sequence: Indices 126147 -- 126646
GAGACGAAGAACGCCGTGCATTGATGGGTGGTGAGGTCCCATATTGACTATCATAAATTCTTTTT
CTGTAGCTAGTATACTCATAGATTTTTACTCGATTCATTCCTACATGAATTGTTGAAAACAACAA
GAAGTTCATCAAGATTCAAAATCAAATAATTAGAAATTGTTTTTCAAATTAACGATTTTTTGACT
ACCGAATATTCAACTTACTAATTAATTCTTTATAACGTACTCTATTTTTCTTTAACAAATACGCT
AGTAGACGTTGGCGTTTTTCCAAAATTTTCCGTAGACCCCTTTGAGATAAATAGTCTTTTCTGTG
CAATTCTAAATGTGAAGTAAGTCTCCGTATCTTATTAGTGAAACGGAATACTTGAAATTCAACCG
ATCCACAGTTTTCTTCTTTTTTTTCTTGAACCATAACTAAGACGAATGAATTTTTTACCATAAAA
CGAAACCCCCTCTCTCTCCTTTTTTGAAGATGAATTTTACTGATC
Right flanking sequence: Indices 126672 -- 127171
CTAGTTACTTGAATTTGATATATACAATAATCTTAAGTTCGTTCTGAACTTGGTAAAAAATCACT
ATCAATAATCAATCTAATTTTCAATTAGATTAGGCATGAAAAAGGATGGTAGAGTTCTGAAAAAG
AGAAAAGTTGGACCTAAAAAAAAAATAGCTTCTTGATTCATTTATGGATCTAATTAATATGTACG
CCCTTAAATTGGTATCTTGTATCAGACTCGAATGGAAGACAGGACATGTATCCATTTCTTTGTTT
TTATGTCCCATGTTTGTGACATGATCGATAAGAAAAGCACACTATTAACAAATTTTCAATCGTGG
ATACATATGTACCCTTACCATACTGAAACGACTCCCATTATTGGTATTAAACCAATATCGATTCA
TACAAATTAAATCTTCTAATCGATATTTGGACCAAATAAAGAACTTTAATTGAATTAGTTGATTT
TTCTCTTTAGAAAAATCTTTGTTTTTATCCAAAAAGTGACCCCCG
Found at i:128508 original size:12 final size:12
Alignment explanation
Indices: 128491--128516 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
128481 AATACTCTTG
128491 TTTATTATTTAC
1 TTTATTATTTAC
128503 TTTATTATTTAC
1 TTTATTATTTAC
128515 TT
1 TT
128517 GGCCTAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATTATTTAC
Left flanking sequence: Indices 127991 -- 128490
TTTCCATTCAAATTCAAAAGAATTAATTTGATTGGTATGATCCATGGTTTTGTTCTATATGCATT
AAAAAGTAGCGCAAATTCTGGAAACAACCAAGGCTCCAGGTTTGATATAGGACAACTTAGTATTT
CTTCATTCATTCCCATCCAATCAAAAAGTGTTGTTTTTTTGTTGGATGGGTTAATTTCTTCATCT
TGATGAATTGTAAGATAAAAGGGGTCTCTTTTATTAATTGCATCAATTTTTTTATAATTATCGGA
CCCGATCTTAGTATTTTGTTTACTGCAGGTACCCGTATCCATATCAACCCAGGCTTCAATATTCA
CCTTATTTCTAAGATAAAAATTAAGAATTCTCCAATCAAAAAATTTTCTATACAAGAATTTGTCC
ATATCTATAATATTATCTTCTCCTCGATAATTATTGATAGGGATAGCTCCCAGCATAGCAAAAAA
ATTTCCTTTTTCTTTATTTATATTGTAATTATAATAATACTCTTG
Right flanking sequence: Indices 128517 -- 129016
GGCCTAGTGATCTATCAATATATGAGTCTTTCATATCTTCATAATTAATCGATTTATATGATAAA
CGATAATATCGATAGTGTTTTTTAAAATTCGATTTTTGATTACGTAATAAGCCTGCTTCAAAAAA
AAGTTGTTTTTCGTAATGAGTTAATCCATTTTTTTCATATGAATCTCTTTTAGTTAAATCTTTAT
TTTGCGACATAGAGTCTTGATGGGCTCTATTTCGCGATTCTTGTGGTACGAATCTAGCCCATTTA
ATCCGATATCGATAGAAATTATATTGATAATGATCGCTTAAGCAGTTTTTCCATAAATTCTTTCC
AAAATGCCAAAAGGGTTTATGTCTTAATTGGTAATTAAATATTCCGTGTTTGTCAAAAAAATCTT
TTATTTCATTCTTAAGAAATAGAGATGTTTTGTGATATTGAAGAATAGGTCTTAATTTATAAAAG
CAAAAAATTGGGGCTTGTAACAATTTGTAAAATACATATGTTTGC
Found at i:142179 original size:18 final size:18
Alignment explanation
Indices: 142156--142193 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
142146 ATACTAATCT
142156 AATACTAATAGAATAGAA
1 AATACTAATAGAATAGAA
142174 AATACTAATAGAATAGAA
1 AATACTAATAGAATAGAA
142192 AA
1 AA
142194 GAACTGTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (18 bp):
AATACTAATAGAATAGAA
Left flanking sequence: Indices 141656 -- 142155
AAATCAGAACCAAGTCAAGATGATACGGATCAACCCCTCCTTCTTGCGCCAAAGATCTTACCATT
TCCGAAGGAACTGGAGTTACATCTCTTTTCCATTTCCATTCAAGAGTTCTTATATCTTTCCGCGC
TCCTTTAAGCCCCCGAAAAATTGACAAAACGATTAACTACTTCATTTATGAATTTCATAGTAATA
GAAATACATGTCCTACCGAAACAGAATTTTGAACTTGCTATCCTCTTGCCTAGCAGGCAAAGATT
TGCCTCCGTGGAAAAGATGATTCATTCGGATCAAGATGAAAGCCCTACTACATTGCATTGCCAGA
ATACATGTTGTATATTTGAAAGAGGTTAACCTCCTTGCTTCTCTCATGGTACAATCCTCTTCCCG
CCGAGCCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTAATCACG
GAAGAAAGGACTCACTGAGCCGGGATCACTAACTAATACTAATCT
Right flanking sequence: Indices 142194 -- 142693
GAACTGTCTTTTCTGTATACTTATGTATACTTTCCACGGTTCCGTTGCTACCGCGGGCTTTACGC
AATCGATCGGATCATATAGATATCCCTTTAACATTAACACAACACAGGTCGTCGAAAGGATCTCG
GAGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAAAGGATTCCCATTCGAAGAGTGCATA
ACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGGGAGG
TATCGGGAAGGAATTGGAATGGAATAATATCGATTCATATAGATATTCATATAGATACAGAAGAA
AAAGTTCTCTATTGATTCAAATGCTGTACCTATGGGATAGAGAAAGAGGAAAAAACCGAAGATTT
CACATAGTACTTTTGATCGAAAAATCAATCCGATCCATTTTGTACCCTTCGCTCAATGAGAAAAT
GGATCAGATTCTATAGGATCAAACCTATGGGACTTAAGGAATGAT
Found at i:142503 original size:12 final size:12
Alignment explanation
Indices: 142486--142510 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
142476 AATAATATCG
142486 ATTCATATAGAT
1 ATTCATATAGAT
142498 ATTCATATAGAT
1 ATTCATATAGAT
142510 A
1 A
142511 CAGAAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (12 bp):
ATTCATATAGAT
Left flanking sequence: Indices 141986 -- 142485
TGTTGTATATTTGAAAGAGGTTAACCTCCTTGCTTCTCTCATGGTACAATCCTCTTCCCGCCGAG
CCCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTAATCACGGAAGA
AAGGACTCACTGAGCCGGGATCACTAACTAATACTAATCTAATACTAATAGAATAGAAAATACTA
ATAGAATAGAAAAGAACTGTCTTTTCTGTATACTTATGTATACTTTCCACGGTTCCGTTGCTACC
GCGGGCTTTACGCAATCGATCGGATCATATAGATATCCCTTTAACATTAACACAACACAGGTCGT
CGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGGATCTTTCAGAAAAAGGATTCCCATT
CGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTGGGATCCAATTCGGGAT
TTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGGAATAATATCG
Right flanking sequence: Indices 142511 -- 143010
CAGAAGAAAAAGTTCTCTATTGATTCAAATGCTGTACCTATGGGATAGAGAAAGAGGAAAAAACC
GAAGATTTCACATAGTACTTTTGATCGAAAAATCAATCCGATCCATTTTGTACCCTTCGCTCAAT
GAGAAAATGGATCAGATTCTATAGGATCAAACCTATGGGACTTAAGGAATGATGGAAGGGAATAA
AATAAAAAAAAAAAGAAATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTCCAAATGAACAA
CTTCAAACTTGAAAAGGATCTTTCTGATTCTCGAAGAATGAGGGGCAAAGGGATTGATCGAGAAA
GATCTCTTGTTCTTATTATAAGATCGTGTGATTGGGTCCGCAGATGTTTGGTAAAAAGAATAATC
TTCTCCTTTGAGAATAATCAAAAATGGAAAGTGTTCAATTGGAACATGAAAACGTGACTGAATTG
GTCCTAGTTACTCTTGGGGACGGAGTGGAAGAAGGGAGGAGATTC
Found at i:150467 original size:18 final size:18
Alignment explanation
Indices: 150446--150538 Score: 177
Period size: 18 Copynumber: 5.2 Consensus size: 18
150436 CAAGGTCACG
150446 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
150464 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
150482 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
150500 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTAGC
*
150518 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTAGC
150536 ATC
1 ATC
150539 GTCGATATCA
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
18 74 1.00
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Left flanking sequence: Indices 149946 -- 150445
GTAATACTAATCAATAGGGCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCATGGT
TATGGACCCGAATCCATTAGTATGGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAA
GAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAAT
TTATTCGGGGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGAAT
ATTTCTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAGACCGAGGGATAAGT
AATTCGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCT
TTTGCTAATTCGAATTGAAGGGTGATATAAAATCGGCCTATTTCCGACATCATATCGATAGTTAG
CGCATTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACG
Right flanking sequence: Indices 150539 -- 151038
GTCGATATCATCAATAAGAAAACCTTTAGGCTTGTTATCCAGGAACTTGTTCAGAAATACTGTAA
TGAAAGGAACATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGAGCGTCCGGTTCCTATAGAA
CCTATCACTAAAATACCCCTAGAGGGGGATAGGGCTAGGCGGAGCGAAAAGGGTTTTCCATGAGA
TGGGAAATGAAAACTATTAGCCCCACACGAAGTTTGTGAATAAGTGATTGTCTGATAATGAGCAA
GGAATATCCGTCTTTCTGCTAAACAGTATGTATTGAACTCATAATTCATGAAATGCTTTTTATGA
ATGTCAACTAAGTATCGTAAGTAAATTGTTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATT
CTTTGATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTA
AGGTGGAGAAATGAACCAAGAATTCTCTTTCTTTATCATCAATCG
Found at i:152991 original size:24 final size:24
Alignment explanation
Indices: 152919--152993 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 24
152909 CCCGAAACTC
* *
152919 ACAAAGAAAAAAGGAAGTGAGTTAG
1 ACAAA-AAGAAAGGAAGTGACTTAG
** *
152944 ACAAAAAG-AA--AAGCAACTTGG
1 ACAAAAAGAAAGGAAGTGACTTAG
152965 ACAAAAAGAAAGGAAGTGACTTAG
1 ACAAAAAGAAAGGAAGTGACTTAG
152989 ACAAA
1 ACAAA
152994 TCTTTTTTGT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
21 15 0.38
22 2 0.05
23 2 0.05
24 15 0.38
25 5 0.13
ACGTcount: A:0.57, C:0.09, G:0.23, T:0.11
Consensus pattern (24 bp):
ACAAAAAGAAAGGAAGTGACTTAG
Left flanking sequence: Indices 152419 -- 152918
ACGTAAAATCATAATTATTGATACGGACCTTTTCCACATAAAAAGTGAATCTTTTGTTACAATAG
AAGCGGAAGCGATGTGGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATATCAA
TGAACTTCTATGAAATGGTTTCGCAGGATTCAGCCAATTGTCTTGATCGTGGGATATCGTTGAGA
AATAGGAATTCGTGTTATTGTTATCAAAAGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCA
ATCATCCACTTTGGTATCTTATTGAACAAAAATGGTGATATTCTTCCTCCATTGATCAAGAATTT
TGATTTTTGGGTTTGAGAAGTATTATGATCATCCAATAAGAAGGGTTTCCATTTTTTCAAATGAA
CGATTTGAAGACCTATTGATTCTAACAACCGATTGCAGAGTTGATCATTCGGACCTTTCAATTCA
TAGATGTGGATCTCAGACCTATGAATGGGGATATTCCCGAAACTC
Right flanking sequence: Indices 152994 -- 153493
TCTTTTTTGTCGATAACTTCAGACCAATCAATCAAATATTGATTAATACGTAATCGATCGAACAC
TACTTGAAAACGGCTCTTCTGCTCAGAAACGAAATGTTTCAAATGCTCCTGGAAATCCTTGCTCC
CATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGAATCTCTCGGTTCGAGAAATA
AAAATAAGAGGAGCGAACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTTGATCGT
ATATTTCATTATAGTTCTATGATTCAGAGTATCATTTCCTATTTGATCCCTGCGAATTCCATATT
CGAAGTTGCGATCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAG
GTGCTATATTGGATTTGAATCCGATTTTGGATCAATCTAGATTGATTGACTGCCTCCATTATGTT
GTTGTTAGCAAATGCCACTATTTTTGGTTTTGGATCTTCCAAATC
Done.